Pregenerated sensors for MDH1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020321Ensembl transcript IDs: ENSMUST00000102874.11, ENSMUST00000238916.2, ENSMUST00000239073.2
Found 74 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTCAAAAACAGTTTCCTTCGGCTGTCTGCTaGTGTCAAAACGAGTGTCTA | + |
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Preference number: 2 (lower is better) Translates to: HKDDACLLMENRLTQKQFPSAVC*CQNECL Trigger: TAGACACTCGTTTTGACATCAGCAGACAGCCGAAGG...AAACTGTTTTTGAGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000102874.11 ENSMUST00000239073.2 |
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| 3UTR-3UTR TCA 90 bp | AAAACACACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTCAAAAACCTTCGGCTGTCTGCTaGTGTCAAAACGAGTGTCTA | + |
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Preference number: 2 (lower is better) Translates to: KTHKDDACLLMENRLTQKPSAVC*CQNECL Trigger: TAGACACTCGTTTTGACATCAGCAGACAGCCGAAGG...TTTTTGAGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTGTGTTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000102874.11 ENSMUST00000239073.2 |
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| 3UTR-3UTR CCA 90 bp | ACACACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTCAAAAACAGCCCTCTGAAATTGATTaGGCTTCCTTGTTTATGTTA | + |
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Preference number: 2 (lower is better) Translates to: THKDDACLLMENRLTQKQPSEID*ASLFML Trigger: TAACATAAACAAGGAAGCCCAATCAATTTCAGAGGG...CTGTTTTTGAGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTGTGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| 3UTR-3UTR CCA 90 bp | CACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTCAAAAACAGTTTCCCTCTGAAATTGATTaGGCTTCCTTGTTTATGTTA | + |
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Preference number: 2 (lower is better) Translates to: HKDDACLLMENRLTQKQFPSEID*ASLFML Trigger: TAACATAAACAAGGAAGCCCAATCAATTTCAGAGGG...AAACTGTTTTTGAGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| 3UTR TCA 72 bp | TTTATTGCACTGAGTAATGCACAAAACACACAAAGATaGTGCATGTCTTCTCATGGAAAACAGACTGACTCA | + |
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Preference number: 3 (lower is better) Translates to: FIALSNAQNTQR*CMSSHGKQTDS Trigger: TGAGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTGTGTTTTGTGCATTACTCAGTGCAATAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| 3UTR CCA 72 bp | TATCCACAAAGCAAATTACAGCCAGCTTTGAGATTATaGTTATTTATTGCACTGAGTAATGCACAAAACACA | + |
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Preference number: 3 (lower is better) Translates to: YPQSKLQPALRL*LFIALSNAQNT Trigger: TGTGTTTTGTGCATTACTCAGTGCAATAAATAACCATAATCTCAAAGCTGGCTGTAATTTGCTTTGTGGATA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000239073.2 |
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| CDS-3UTR CCA 90 bp | ACACACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTCAAAAACAGTCGATGGCGCTGACTTaGAGGCTGTCAGGCAGTTCG | + |
|
Preference number: 4 (lower is better) Translates to: THKDDACLLMENRLTQKQSMALT*RLSGSS Trigger: CGAACTGCCTGACAGCCTCCAAGTCAGCGCCATCGA...CTGTTTTTGAGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTGTGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR CCA 90 bp | CACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTCAAAAACAGTTTTCGATGGCGCTGACTTaGAGGCTGTCAGGCAGTTCG | + |
|
Preference number: 4 (lower is better) Translates to: HKDDACLLMENRLTQKQFSMALT*RLSGSS Trigger: CGAACTGCCTGACAGCCTCCAAGTCAGCGCCATCGA...AAACTGTTTTTGAGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR TCA 90 bp | ACACACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTCAAAAACAGCACCCATCATGGGGGTaGTGTCCAACAGCACAAGAA | + |
|
Preference number: 4 (lower is better) Translates to: THKDDACLLMENRLTQKQHPSWG*CPTAQE Trigger: TTCTTGTGCTGTTGGACATCACCCCCATGATGGGTG...CTGTTTTTGAGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTGTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR TCA 90 bp | ACACACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTCAAAAACAGAGCGAGTCAGGCAACTaGAATTCTCCTTGGGGATCG | + |
|
Preference number: 4 (lower is better) Translates to: THKDDACLLMENRLTQKQSESGN*NSPWGS Trigger: CGATCCCCAAGGAGAATTTCAGTTGCCTGACTCGCT...CTGTTTTTGAGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTGTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR TCA 90 bp | ATGCACAAAACACACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTAGCGAGTCAGGCAACTaGAATTCTCCTTGGGGATCG | + |
|
Preference number: 4 (lower is better) Translates to: MHKTHKDDACLLMENRLTSESGN*NSPWGS Trigger: CGATCCCCAAGGAGAATTTCAGTTGCCTGACTCGCT...AGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTGTGTTTTGTGCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR TCA 90 bp | ACACACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTCAAAAACAGGATCACGACAGGGAATaGGTAGAGCAGGTCATCAGG | + |
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Preference number: 4 (lower is better) Translates to: THKDDACLLMENRLTQKQDHDRE*VEQVIR Trigger: CCTGATGACCTGCTCTACTCATTCCCTGTCGTGATC...CTGTTTTTGAGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTGTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR GCA 90 bp | ACACACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTCAAAAACAGGTCTCTGATGTGGTCTaGGATGGCTTTCGCAGCAGA | + |
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Preference number: 4 (lower is better) Translates to: THKDDACLLMENRLTQKQVSDVV*DGFRSR Trigger: TCTGCTGCGAAAGCCATCGCAGACCACATCAGAGAC...CTGTTTTTGAGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTGTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR CCA 90 bp | ATGCACAAAACACACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTCACGAACTCTCCCTCTaGGGTTCCAAACCAGATGTC | + |
|
Preference number: 4 (lower is better) Translates to: MHKTHKDDACLLMENRLTHELSL*GSKPDV Trigger: GACATCTGGTTTGGAACCCCAGAGGGAGAGTTCGTG...AGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTGTGTTTTGTGCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR TCA 90 bp | CACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTCAAAAACAGTTTCACCCATCATGGGGGTaGTGTCCAACAGCACAAGAA | + |
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Preference number: 4 (lower is better) Translates to: HKDDACLLMENRLTQKQFHPSWG*CPTAQE Trigger: TTCTTGTGCTGTTGGACATCACCCCCATGATGGGTG...AAACTGTTTTTGAGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR TCA 90 bp | CACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTCAAAAACAGTTTAGCGAGTCAGGCAACTaGAATTCTCCTTGGGGATCG | + |
|
Preference number: 4 (lower is better) Translates to: HKDDACLLMENRLTQKQFSESGN*NSPWGS Trigger: CGATCCCCAAGGAGAATTTCAGTTGCCTGACTCGCT...AAACTGTTTTTGAGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR TCA 90 bp | CACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTCAAAAACAGTTTGATCACGACAGGGAATaGGTAGAGCAGGTCATCAGG | + |
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Preference number: 4 (lower is better) Translates to: HKDDACLLMENRLTQKQFDHDRE*VEQVIR Trigger: CCTGATGACCTGCTCTACTCATTCCCTGTCGTGATC...AAACTGTTTTTGAGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR TCA 90 bp | ATGCACAAAACACACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTCCTTCGGCTGTCTGCTaGTGTCAAAACGAGTGTCTA | + |
|
Preference number: 4 (lower is better) Translates to: MHKTHKDDACLLMENRLTPSAVC*CQNECL Trigger: TAGACACTCGTTTTGACATCAGCAGACAGCCGAAGG...AGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTGTGTTTTGTGCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000238916.2 |
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| CDS-3UTR GCA 90 bp | CACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTCAAAAACAGTTTGTCTCTGATGTGGTCTaGGATGGCTTTCGCAGCAGA | + |
|
Preference number: 4 (lower is better) Translates to: HKDDACLLMENRLTQKQFVSDVV*DGFRSR Trigger: TCTGCTGCGAAAGCCATCGCAGACCACATCAGAGAC...AAACTGTTTTTGAGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR GCA 90 bp | ATGCACAAAACACACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTCTCGGTCAGCTCCTTTaGTGTCAGGTCCATCTTTTC | + |
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Preference number: 4 (lower is better) Translates to: MHKTHKDDACLLMENRLTLGQLL*CQVHLF Trigger: GAAAAGATGGACCTGACAGCAAAGGAGCTGACCGAG...AGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTGTGTTTTGTGCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR CCA 90 bp | CACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTCAAAAACAGTTTCACGAACTCTCCCTCTaGGGTTCCAAACCAGATGTC | + |
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Preference number: 4 (lower is better) Translates to: HKDDACLLMENRLTQKQFHELSL*GSKPDV Trigger: GACATCTGGTTTGGAACCCCAGAGGGAGAGTTCGTG...AAACTGTTTTTGAGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR TCA 90 bp | AAAACACACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTCAAAAACACCCATCATGGGGGTaGTGTCCAACAGCACAAGAA | + |
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Preference number: 4 (lower is better) Translates to: KTHKDDACLLMENRLTQKHPSWG*CPTAQE Trigger: TTCTTGTGCTGTTGGACATCACCCCCATGATGGGTG...TTTTTGAGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTGTGTTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR GCA 90 bp | ACACACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTCAAAAACAGTGCAATTTGACCAGCTaGTCCAGTCACAAGGACTCT | + |
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Preference number: 4 (lower is better) Translates to: THKDDACLLMENRLTQKQCNLTS*SSHKDS Trigger: AGAGTCCTTGTGACTGGAGCAGCTGGTCAAATTGCA...CTGTTTTTGAGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTGTGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR GCA 90 bp | CACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTCAAAAACAGTTTCTCGGTCAGCTCCTTTaGTGTCAGGTCCATCTTTTC | + |
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Preference number: 4 (lower is better) Translates to: HKDDACLLMENRLTQKQFLGQLL*CQVHLF Trigger: GAAAAGATGGACCTGACAGCAAAGGAGCTGACCGAG...AAACTGTTTTTGAGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR CCA 90 bp | ACACACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTCAAAAACAGTCAGGCAGTTCGTATTaGCTGGGTTTCCCACAACAA | + |
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Preference number: 4 (lower is better) Translates to: THKDDACLLMENRLTQKQSGSSY*LGFPQQ Trigger: TTGTTGTGGGAAACCCAGCCAATACGAACTGCCTGA...CTGTTTTTGAGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTGTGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR TCA 90 bp | ATGCACAAAACACACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTAGTGAATATGCAATTTaGCCAGCTGCTCCAGTCACA | + |
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Preference number: 4 (lower is better) Translates to: MHKTHKDDACLLMENRLTSEYAI*PAAPVT Trigger: TGTGACTGGAGCAGCTGGTCAAATTGCATATTCACT...AGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTGTGTTTTGTGCAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR GCA 90 bp | CACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTCAAAAACAGTTTTGCAATTTGACCAGCTaGTCCAGTCACAAGGACTCT | + |
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Preference number: 4 (lower is better) Translates to: HKDDACLLMENRLTQKQFCNLTS*SSHKDS Trigger: AGAGTCCTTGTGACTGGAGCAGCTGGTCAAATTGCA...AAACTGTTTTTGAGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR GCA 90 bp | ACACACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTCAAAAACAGCTCTTCTTTGTCCGTTaGAATGACATCCTGCAGAAG | + |
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Preference number: 4 (lower is better) Translates to: THKDDACLLMENRLTQKQLFFVR*NDILQK Trigger: CTTCTGCAGGATGTCATTGCAACGGACAAAGAAGAG...CTGTTTTTGAGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTGTGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR GCA 90 bp | ACACACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTCAAAAACAGAGCAATTTGAGATTTTaGTCGGTTGTGGTCCAAGCG | + |
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Preference number: 4 (lower is better) Translates to: THKDDACLLMENRLTQKQSNLRF*SVVVQA Trigger: CGCTTGGACCACAACCGAGCAAAATCTCAAATTGCT...CTGTTTTTGAGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTGTGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR GCA 90 bp | ATGCACAAAACACACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTAGCAATTTGAGATTTTaGTCGGTTGTGGTCCAAGCG | + |
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Preference number: 4 (lower is better) Translates to: MHKTHKDDACLLMENRLTSNLRF*SVVVQA Trigger: CGCTTGGACCACAACCGAGCAAAATCTCAAATTGCT...AGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTGTGTTTTGTGCAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR GCA 90 bp | CAACAAGTATTTGAATATCCACAAAGCAAATTACAGCCAGCTTTGAGATTATGGCTCGGTCAGCTCCTTTaGTGTCAGGTCCATCTTTTC | + |
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Preference number: 4 (lower is better) Translates to: QQVFEYPQSKLQPALRLWLGQLL*CQVHLF Trigger: GAAAAGATGGACCTGACAGCAAAGGAGCTGACCGAG...CCATAATCTCAAAGCTGGCTGTAATTTGCTTTGTGGATATTCAAATACTTGTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000239073.2 |
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| CDS-3UTR CCA 90 bp | ACACACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTCAAAAACAGTCCAAGGCTGTGCCCTaGGATTTGAAGATTTTCACA | + |
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Preference number: 4 (lower is better) Translates to: THKDDACLLMENRLTQKQSKAVP*DLKIFT Trigger: TGTGAAAATCTTCAAATCCCAGGGCACAGCCTTGGA...CTGTTTTTGAGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTGTGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR TCA 90 bp | CACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTCAAAAACAGTTTCTGTGCCCTGGGATTTaGAGATTTTCACATTGGCTT | + |
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Preference number: 4 (lower is better) Translates to: HKDDACLLMENRLTQKQFLCPGI*RFSHWL Trigger: AAGCCAATGTGAAAATCTTCAAATCCCAGGGCACAG...AAACTGTTTTTGAGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR TCA 90 bp | ATGCACAAAACACACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTTGGATACTGGGTCGATaGATGATTTCCCCAGATAAT | + |
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Preference number: 4 (lower is better) Translates to: MHKTHKDDACLLMENRLTWILGR*MISPDN Trigger: ATTATCTGGGGAAATCATTCATCGACCCAGTATCCA...AGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTGTGTTTTGTGCAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR GCA 90 bp | CAACAAGTATTTGAATATCCACAAAGCAAATTACAGCCAGCTTTGAGATTATGGTGCAATTTGACCAGCTaGTCCAGTCACAAGGACTCT | + |
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Preference number: 4 (lower is better) Translates to: QQVFEYPQSKLQPALRLWCNLTS*SSHKDS Trigger: AGAGTCCTTGTGACTGGAGCAGCTGGTCAAATTGCA...CCATAATCTCAAAGCTGGCTGTAATTTGCTTTGTGGATATTCAAATACTTGTTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000239073.2 |
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| CDS-3UTR GCA 90 bp | CACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTCAAAAACAGTTTAGCAATTTGAGATTTTaGTCGGTTGTGGTCCAAGCG | + |
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Preference number: 4 (lower is better) Translates to: HKDDACLLMENRLTQKQFSNLRF*SVVVQA Trigger: CGCTTGGACCACAACCGAGCAAAATCTCAAATTGCT...AAACTGTTTTTGAGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR CCA 90 bp | ACACACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTCAAAAACAGACAAGAATGATGGGCTaGTCTTTCCCAAAGACAGAT | + |
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Preference number: 4 (lower is better) Translates to: THKDDACLLMENRLTQKQTRMMG*SFPKTD Trigger: ATCTGTCTTTGGGAAAGACCAGCCCATCATTCTTGT...CTGTTTTTGAGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTGTGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR CCA 90 bp | ATGCACAAAACACACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTACAAGAATGATGGGCTaGTCTTTCCCAAAGACAGAT | + |
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Preference number: 4 (lower is better) Translates to: MHKTHKDDACLLMENRLTTRMMG*SFPKTD Trigger: ATCTGTCTTTGGGAAAGACCAGCCCATCATTCTTGT...AGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTGTGTTTTGTGCAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR CCA 90 bp | CACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTCAAAAACAGTTTTCCAAGGCTGTGCCCTaGGATTTGAAGATTTTCACA | + |
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Preference number: 4 (lower is better) Translates to: HKDDACLLMENRLTQKQFSKAVP*DLKIFT Trigger: TGTGAAAATCTTCAAATCCCAGGGCACAGCCTTGGA...AAACTGTTTTTGAGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR CCA 90 bp | AAAACACACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTCAAAAATCAGGCAGTTCGTATTaGCTGGGTTTCCCACAACAA | + |
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Preference number: 4 (lower is better) Translates to: KTHKDDACLLMENRLTQKSGSSY*LGFPQQ Trigger: TTGTTGTGGGAAACCCAGCCAATACGAACTGCCTGA...TTTTTGAGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTGTGTTTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR TCA 90 bp | AAAACACACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTCAAAAAAGTGAATATGCAATTTaGCCAGCTGCTCCAGTCACA | + |
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Preference number: 4 (lower is better) Translates to: KTHKDDACLLMENRLTQKSEYAI*PAAPVT Trigger: TGTGACTGGAGCAGCTGGTCAAATTGCATATTCACT...TTTTTGAGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTGTGTTTT 39% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR TCA 90 bp | AAAACACACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTCAAAAACTGTGCCCTGGGATTTaGAGATTTTCACATTGGCTT | + |
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Preference number: 4 (lower is better) Translates to: KTHKDDACLLMENRLTQKLCPGI*RFSHWL Trigger: AAGCCAATGTGAAAATCTTCAAATCCCAGGGCACAG...TTTTTGAGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTGTGTTTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR TCA 90 bp | CACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTCAAAAACAGTTTTGGATACTGGGTCGATaGATGATTTCCCCAGATAAT | + |
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Preference number: 4 (lower is better) Translates to: HKDDACLLMENRLTQKQFWILGR*MISPDN Trigger: ATTATCTGGGGAAATCATTCATCGACCCAGTATCCA...AAACTGTTTTTGAGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR GCA 90 bp | AAAACACACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTCAAAAACTCTTCTTTGTCCGTTaGAATGACATCCTGCAGAAG | + |
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Preference number: 4 (lower is better) Translates to: KTHKDDACLLMENRLTQKLFFVR*NDILQK Trigger: CTTCTGCAGGATGTCATTGCAACGGACAAAGAAGAG...TTTTTGAGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTGTGTTTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR CCA 90 bp | CACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTCAAAAACAGTTTACAAGAATGATGGGCTaGTCTTTCCCAAAGACAGAT | + |
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Preference number: 4 (lower is better) Translates to: HKDDACLLMENRLTQKQFTRMMG*SFPKTD Trigger: ATCTGTCTTTGGGAAAGACCAGCCCATCATTCTTGT...AAACTGTTTTTGAGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR TCA 90 bp | ACACACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTCAAAAACAGAACAATGACCTTAACTaGTTTCTTGGCGTATTTCTC | + |
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Preference number: 4 (lower is better) Translates to: THKDDACLLMENRLTQKQNNDLN*FLGVFL Trigger: GAGAAATACGCCAAGAAATCAGTTAAGGTCATTGTT...CTGTTTTTGAGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTGTGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR TCA 90 bp | ATGCACAAAACACACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTAACAATGACCTTAACTaGTTTCTTGGCGTATTTCTC | + |
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Preference number: 4 (lower is better) Translates to: MHKTHKDDACLLMENRLTNNDLN*FLGVFL Trigger: GAGAAATACGCCAAGAAATCAGTTAAGGTCATTGTT...AGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTGTGTTTTGTGCAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR TCA 90 bp | AAAACACACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTCAAAAATGGATACTGGGTCGATaGATGATTTCCCCAGATAAT | + |
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Preference number: 4 (lower is better) Translates to: KTHKDDACLLMENRLTQKWILGR*MISPDN Trigger: ATTATCTGGGGAAATCATTCATCGACCCAGTATCCA...TTTTTGAGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTGTGTTTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR TCA 90 bp | AAAACACACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTCAAAAAAACAATGACCTTAACTaGTTTCTTGGCGTATTTCTC | + |
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Preference number: 4 (lower is better) Translates to: KTHKDDACLLMENRLTQKNNDLN*FLGVFL Trigger: GAGAAATACGCCAAGAAATCAGTTAAGGTCATTGTT...TTTTTGAGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTGTGTTTT 36% GC, longest homopolymer 7 nt, total homopolymer stretches 15 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS TCA 90 bp | CAATTTGAGATTTTGCTCGGTTGTGGTCCAAGCGAGTCAGGCAACTaGAATTCTCCTTGGGGATCGATGGCGCTGACTTGGAGGCTGTCA | + |
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Preference number: 5 (lower is better) Translates to: QFEILLGCGPSESGN*NSPWGSMALTWRLS Trigger: TGACAGCCTCCAAGTCAGCGCCATCGATCCCCAAGGAGAATTTCAGTTGCCTGACTCGCTTGGACCACAACCGAGCAAAATCTCAAATTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR CAA 90 bp | ACACACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTCAAAAACAGGACAGCTTCCGAGCCTaGATGACAGCAGCACCACGC | + |
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Preference number: 5 (lower is better) Translates to: THKDDACLLMENRLTQKQDSFRA*MTAAPR Trigger: GCGTGGTGCTGCTGTCATCAAGGCTCGGAAGCTGTC...CTGTTTTTGAGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTGTGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR CAA 90 bp | ATGCACAAAACACACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTATCGATGGCGCTGACTaGGAGGCTGTCAGGCAGTTC | + |
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Preference number: 5 (lower is better) Translates to: MHKTHKDDACLLMENRLTIDGAD*EAVRQF Trigger: GAACTGCCTGACAGCCTCCAAGTCAGCGCCATCGAT...AGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTGTGTTTTGTGCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR CAA 90 bp | CACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTCAAAAACAGTTTGACAGCTTCCGAGCCTaGATGACAGCAGCACCACGC | + |
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Preference number: 5 (lower is better) Translates to: HKDDACLLMENRLTQKQFDSFRA*MTAAPR Trigger: GCGTGGTGCTGCTGTCATCAAGGCTCGGAAGCTGTC...AAACTGTTTTTGAGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR CAA 90 bp | CACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTCAAAAACAGTTTATCGATGGCGCTGACTaGGAGGCTGTCAGGCAGTTC | + |
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Preference number: 5 (lower is better) Translates to: HKDDACLLMENRLTQKQFIDGAD*EAVRQF Trigger: GAACTGCCTGACAGCCTCCAAGTCAGCGCCATCGAT...AAACTGTTTTTGAGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR CAA 90 bp | ACACACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTCAAAAACAGACCGACTTCCTTTCCTaGCAGTTTCACCTTGGCATG | + |
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Preference number: 5 (lower is better) Translates to: THKDDACLLMENRLTQKQTDFLS*QFHLGM Trigger: CATGCCAAGGTGAAACTGCAAGGAAAGGAAGTCGGT...CTGTTTTTGAGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTGTGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR CAA 90 bp | AAAACACACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTCAAAAACTTTCGCAGCAGACATaGCACTGGACAGCTTCCGAG | + |
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Preference number: 5 (lower is better) Translates to: KTHKDDACLLMENRLTQKLSQQT*HWTASE Trigger: CTCGGAAGCTGTCCAGTGCAATGTCTGCTGCGAAAG...TTTTTGAGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTGTGTTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR CAA 90 bp | CAACAAGTATTTGAATATCCACAAAGCAAATTACAGCCAGCTTTGAGATTATGGCTTTCGCAGCAGACATaGCACTGGACAGCTTCCGAG | + |
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Preference number: 5 (lower is better) Translates to: QQVFEYPQSKLQPALRLWLSQQT*HWTASE Trigger: CTCGGAAGCTGTCCAGTGCAATGTCTGCTGCGAAAG...CCATAATCTCAAAGCTGGCTGTAATTTGCTTTGTGGATATTCAAATACTTGTTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000239073.2 |
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| CDS-3UTR CAA 90 bp | ACACACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTCAAAAACAGGCTGTGCCCTGGGATTaGAAGATTTTCACATTGGCT | + |
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Preference number: 5 (lower is better) Translates to: THKDDACLLMENRLTQKQAVPWD*KIFTLA Trigger: AGCCAATGTGAAAATCTTCAAATCCCAGGGCACAGC...CTGTTTTTGAGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTGTGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR CAA 90 bp | ATGCACAAAACACACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTGAGCAATTTGAGATTTaGCTCGGTTGTGGTCCAAGC | + |
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Preference number: 5 (lower is better) Translates to: MHKTHKDDACLLMENRLTEQFEI*LGCGPS Trigger: GCTTGGACCACAACCGAGCAAAATCTCAAATTGCTC...AGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTGTGTTTTGTGCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR CAA 90 bp | CACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTCAAAAACAGTTTACCGACTTCCTTTCCTaGCAGTTTCACCTTGGCATG | + |
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Preference number: 5 (lower is better) Translates to: HKDDACLLMENRLTQKQFTDFLS*QFHLGM Trigger: CATGCCAAGGTGAAACTGCAAGGAAAGGAAGTCGGT...AAACTGTTTTTGAGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR CAA 90 bp | ATGCACAAAACACACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTAAGGCAATCTCTTCTTaGTCCGTTGCAATGACATCC | + |
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Preference number: 5 (lower is better) Translates to: MHKTHKDDACLLMENRLTKAISS*SVAMTS Trigger: GGATGTCATTGCAACGGACAAAGAAGAGATTGCCTT...AGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTGTGTTTTGTGCAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR CAA 90 bp | CACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTCAAAAACAGTTTGCTGTGCCCTGGGATTaGAAGATTTTCACATTGGCT | + |
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Preference number: 5 (lower is better) Translates to: HKDDACLLMENRLTQKQFAVPWD*KIFTLA Trigger: AGCCAATGTGAAAATCTTCAAATCCCAGGGCACAGC...AAACTGTTTTTGAGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR CAA 90 bp | AAAACACACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTCAAAAAACCGACTTCCTTTCCTaGCAGTTTCACCTTGGCATG | + |
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Preference number: 5 (lower is better) Translates to: KTHKDDACLLMENRLTQKTDFLS*QFHLGM Trigger: CATGCCAAGGTGAAACTGCAAGGAAAGGAAGTCGGT...TTTTTGAGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTGTGTTTT 41% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR CAA 90 bp | ATGCACAAAACACACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTTTCCAGGTCTTATTCTaGATCACGACAGGGAATGAG | + |
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Preference number: 5 (lower is better) Translates to: MHKTHKDDACLLMENRLTFQVLF*ITTGNE Trigger: CTCATTCCCTGTCGTGATCAAGAATAAGACCTGGAA...AGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTGTGTTTTGTGCAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR CAA 90 bp | CACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTCAAAAACAGTTTTTCCAGGTCTTATTCTaGATCACGACAGGGAATGAG | + |
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Preference number: 5 (lower is better) Translates to: HKDDACLLMENRLTQKQFFQVLF*ITTGNE Trigger: CTCATTCCCTGTCGTGATCAAGAATAAGACCTGGAA...AAACTGTTTTTGAGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR CAA 90 bp | AAAACACACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTCAAAAAAAGGCAATCTCTTCTTaGTCCGTTGCAATGACATCC | + |
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Preference number: 5 (lower is better) Translates to: KTHKDDACLLMENRLTQKKAISS*SVAMTS Trigger: GGATGTCATTGCAACGGACAAAGAAGAGATTGCCTT...TTTTTGAGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTGTGTTTT 39% GC, longest homopolymer 7 nt, total homopolymer stretches 15 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR CAA 90 bp | CAACAAGTATTTGAATATCCACAAAGCAAATTACAGCCAGCTTTGAGATTATGGAAGGCAATCTCTTCTTaGTCCGTTGCAATGACATCC | + |
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Preference number: 5 (lower is better) Translates to: QQVFEYPQSKLQPALRLWKAISS*SVAMTS Trigger: GGATGTCATTGCAACGGACAAAGAAGAGATTGCCTT...CCATAATCTCAAAGCTGGCTGTAATTTGCTTTGTGGATATTCAAATACTTGTTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000239073.2 |
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| CDS-3UTR CAA 90 bp | ATGCACAAAACACACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTGAGTTTAAGAGCAATTaGAGATTTTGCTCGGTTGTG | + |
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Preference number: 5 (lower is better) Translates to: MHKTHKDDACLLMENRLTEFKSN*RFCSVV Trigger: CACAACCGAGCAAAATCTCAAATTGCTCTTAAACTC...AGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTGTGTTTTGTGCAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR CAA 90 bp | ACACACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTCAAAAACAGGAGTTTAAGAGCAATTaGAGATTTTGCTCGGTTGTG | + |
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Preference number: 5 (lower is better) Translates to: THKDDACLLMENRLTQKQEFKSN*RFCSVV Trigger: CACAACCGAGCAAAATCTCAAATTGCTCTTAAACTC...CTGTTTTTGAGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTGTGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS-3UTR CAA 90 bp | CACAAAGATGATGCATGTCTTCTCATGGAAAACAGACTGACTCAAAAACAGTTTGAGTTTAAGAGCAATTaGAGATTTTGCTCGGTTGTG | + |
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Preference number: 5 (lower is better) Translates to: HKDDACLLMENRLTQKQFEFKSN*RFCSVV Trigger: CACAACCGAGCAAAATCTCAAATTGCTCTTAAACTC...AAACTGTTTTTGAGTCAGTCTGTTTTCCATGAGAAGACATGCATCATCTTTGTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS CAA 72 bp | TTGTGGTCCAAGCGAGTCAGGCAACTGAAATTCTCCTaGGGGATCGATGGCGCTGACTTGGAGGCTGTCAGG | + |
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Preference number: 6 (lower is better) Translates to: LWSKRVRQLKFS*GIDGADLEAVR Trigger: CCTGACAGCCTCCAAGTCAGCGCCATCGATCCCCAAGGAGAATTTCAGTTGCCTGACTCGCTTGGACCACAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS TCA 72 bp | ATTTTGCTCGGTTGTGGTCCAAGCGAGTCAGGCAACTaGAATTCTCCTTGGGGATCGATGGCGCTGACTTGG | + |
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Preference number: 6 (lower is better) Translates to: ILLGCGPSESGN*NSPWGSMALTW Trigger: CCAAGTCAGCGCCATCGATCCCCAAGGAGAATTTCAGTTGCCTGACTCGCTTGGACCACAACCGAGCAAAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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| CDS TCA 72 bp | GACGACATTTTGATTCCTCAGCCTTCGGCTGTCTGCTaGTGTCAAAACGAGTGTCTAGTCACGCAGAGGAGA | + |
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Preference number: 6 (lower is better) Translates to: DDILIPQPSAVC*CQNECLVTQRR Trigger: TCTCCTCTGCGTGACTAGACACTCGTTTTGACATCAGCAGACAGCCGAAGGCTGAGGAATCAAAATGTCGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000238916.2 |
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| CDS GCA 72 bp | AGCGGTTACACCGAGTTTAAGAGCAATTTGAGATTTTaGTCGGTTGTGGTCCAAGCGAGTCAGGCAACTGAA | + |
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Preference number: 6 (lower is better) Translates to: SGYTEFKSNLRF*SVVVQASQATE Trigger: TTCAGTTGCCTGACTCGCTTGGACCACAACCGAGCAAAATCTCAAATTGCTCTTAAACTCGGTGTAACCGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000102874.11 ENSMUST00000238916.2 ENSMUST00000239073.2 |
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