Pregenerated sensors for MDFIC2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000090667Ensembl transcript IDs: ENSMUST00000164491.3
Found 84 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TCAAGAGATGGGTGCTTAGAGAGGATCCAGGGTGGTGGGGTGAGTTaGAAGCATAGGAGGTTCAAGGCTGCCACTGTGTGTTATCAGGGT | + |
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Preference number: 1 (lower is better) Translates to: SRDGCLERIQGGGVS*KHRRFKAATVCYQG Trigger: ACCCTGATAACACACAGTGGCAGCCTTGAACCTCCTATGCTTCCAACTCACCCCACCACCCTGGATCCTCTCTAAGCACCCATCTCTTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| 3UTR TCA 90 bp | TGGGATTTCAGAAACCTCTATGAACTTTCTTCAGTGGCTAGAGTGTaGGTCAAGAGATGGGTGCTTAGAGAGGATCCAGGGTGGTGGGGT | + |
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Preference number: 1 (lower is better) Translates to: WDFRNLYELSSVARV*VKRWVLREDPGWWG Trigger: ACCCCACCACCCTGGATCCTCTCTAAGCACCCATCTCTTGACTCACACTCTAGCCACTGAAGAAAGTTCATAGAGGTTTCTGAAATCCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| 3UTR TCA 90 bp | CCACATGTCTCTCAACCCTACTTTCGACTGTCCACTCTGTTTGGTTaGGATTTGTGCTTTGTACTTCCTGTGGAACAGTGTGTTCCACGC | + |
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Preference number: 1 (lower is better) Translates to: PHVSQPYFRLSTLFG*DLCFVLPVEQCVPR Trigger: GCGTGGAACACACTGTTCCACAGGAAGTACAAAGCACAAATCTCAACCAAACAGAGTGGACAGTCGAAAGTAGGGTTGAGAGACATGTGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| 3UTR CCA 90 bp | GACTGTCCACTCTGTTTGGTTGAGATTTGTGCTTTGTACTTCCTGTaGAACAGTGTGTTCCACGCACAGGAATCCGTACATGCATGTCTA | + |
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Preference number: 1 (lower is better) Translates to: DCPLCLVEICALYFL*NSVFHAQESVHACL Trigger: TAGACATGCATGTACGGATTCCTGTGCGTGGAACACACTGTTCCACAGGAAGTACAAAGCACAAATCTCAACCAAACAGAGTGGACAGTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| 3UTR CCA 90 bp | CAACCCACATGTCTCTCAACCCTACTTTCGACTGTCCACTCTGTTTaGTTGAGATTTGTGCTTTGTACTTCCTGTGGAACAGTGTGTTCC | + |
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Preference number: 1 (lower is better) Translates to: QPTCLSTLLSTVHSV*LRFVLCTSCGTVCS Trigger: GGAACACACTGTTCCACAGGAAGTACAAAGCACAAATCTCAACCAAACAGAGTGGACAGTCGAAAGTAGGGTTGAGAGACATGTGGGTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| 3UTR CCA 90 bp | GTACTTTGGGGTGGGATTTCAGAAACCTCTATGAACTTTCTTCAGTaGCTAGAGTGTGAGTCAAGAGATGGGTGCTTAGAGAGGATCCAG | + |
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Preference number: 1 (lower is better) Translates to: VLWGGISETSMNFLQ*LECESRDGCLERIQ Trigger: CTGGATCCTCTCTAAGCACCCATCTCTTGACTCACACTCTAGCCACTGAAGAAAGTTCATAGAGGTTTCTGAAATCCCACCCCAAAGTAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| 3UTR TCA 90 bp | AATGATAAATTATGGGTTCCAAGGCATACACGCCATATTGGGGAGTaGGCTGAGCAGGTCCCTGCATGCGTATTTATTTTAGGTGCCTGT | + |
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Preference number: 1 (lower is better) Translates to: NDKLWVPRHTRHIGE*AEQVPACVFILGAC Trigger: ACAGGCACCTAAAATAAATACGCATGCAGGGACCTGCTCAGCTCACTCCCCAATATGGCGTGTATGCCTTGGAACCCATAATTTATCATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| 3UTR CCA 90 bp | GACAGGTACAACATAAAATGGCCTAGAGCCTCCATGAAACATGTATaGTCCTTGCATTTGGGCACACAGAGAGAGCTCTTTATCTCAGAT | + |
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Preference number: 1 (lower is better) Translates to: DRYNIKWPRASMKHV*SLHLGTQRELFISD Trigger: ATCTGAGATAAAGAGCTCTCTCTGTGTGCCCAAATGCAAGGACCATACATGTTTCATGGAGGCTCTAGGCCATTTTATGTTGTACCTGTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| 3UTR GCA 90 bp | AGCCACAATGCAGCTACCAAGTCAAGAGCGCAGACTGCTTTAGCATaGTGTTTAACAGTCAAGAAACATCTTCTACCTATGGCATTTAAG | + |
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Preference number: 1 (lower is better) Translates to: SHNAATKSRAQTALA*CLTVKKHLLPMAFK Trigger: CTTAAATGCCATAGGTAGAAGATGTTTCTTGACTGTTAAACAGCATGCTAAAGCAGTCTGCGCTCTTGACTTGGTAGCTGCATTGTGGCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| 3UTR GCA 90 bp | ATGAAGTTGGAGCCACAATGCAGCTACCAAGTCAAGAGCGCAGACTaGTTTAGCATGCTGTTTAACAGTCAAGAAACATCTTCTACCTAT | + |
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Preference number: 1 (lower is better) Translates to: MKLEPQCSYQVKSAD*FSMLFNSQETSSTY Trigger: ATAGGTAGAAGATGTTTCTTGACTGTTAAACAGCATGCTAAAGCAGTCTGCGCTCTTGACTTGGTAGCTGCATTGTGGCTCCAACTTCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| 3UTR TCA 90 bp | AGCAACAGACAGATAATGATATGGTCTAGAATTATAGGGCTCTCCTaGAGTCTACCAGATTCAAGATTCATTGGAGAGGTTTCAAAGACA | + |
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Preference number: 1 (lower is better) Translates to: SNRQIMIWSRIIGLS*SLPDSRFIGEVSKT Trigger: TGTCTTTGAAACCTCTCCAATGAATCTTGAATCTGGTAGACTTCAGGAGAGCCCTATAATTCTAGACCATATCATTATCTGTCTGTTGCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| 3UTR GCA 90 bp | AGGTATTTGGGATTTGTTCATCTCACATGTGATCAAGAATTATTTTaGAGCGAGACATGCGATTGTGAAAGTTGGAACAAGTTGACAGTA | + |
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Preference number: 1 (lower is better) Translates to: RYLGFVHLTCDQELF*SETCDCESWNKLTV Trigger: TACTGTCAACTTGTTCCAACTTTCACAATCGCATGTCTCGCTGCAAAATAATTCTTGATCACATGTGAGATGAACAAATCCCAAATACCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| 3UTR CAA 90 bp | CCCACATGTCTCTCAACCCTACTTTCGACTGTCCACTCTGTTTGGTaGAGATTTGTGCTTTGTACTTCCTGTGGAACAGTGTGTTCCACG | + |
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Preference number: 2 (lower is better) Translates to: PTCLSTLLSTVHSVW*RFVLCTSCGTVCST Trigger: CGTGGAACACACTGTTCCACAGGAAGTACAAAGCACAAATCTCAACCAAACAGAGTGGACAGTCGAAAGTAGGGTTGAGAGACATGTGGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| 3UTR CAA 90 bp | TCAACCCACATGTCTCTCAACCCTACTTTCGACTGTCCACTCTGTTaGGTTGAGATTTGTGCTTTGTACTTCCTGTGGAACAGTGTGTTC | + |
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Preference number: 2 (lower is better) Translates to: STHMSLNPTFDCPLC*VEICALYFLWNSVF Trigger: GAACACACTGTTCCACAGGAAGTACAAAGCACAAATCTCAACCAAACAGAGTGGACAGTCGAAAGTAGGGTTGAGAGACATGTGGGTTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| 3UTR CAA 90 bp | TACAACATAAAATGGCCTAGAGCCTCCATGAAACATGTATGGTCCTaGCATTTGGGCACACAGAGAGAGCTCTTTATCTCAGATGCACTC | + |
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Preference number: 2 (lower is better) Translates to: YNIKWPRASMKHVWS*HLGTQRELFISDAL Trigger: GAGTGCATCTGAGATAAAGAGCTCTCTCTGTGTGCCCAAATGCAAGGACCATACATGTTTCATGGAGGCTCTAGGCCATTTTATGTTGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| 3UTR-3UTR TCA 90 bp | TCAGAAACCTCTATGAACTTTCTTCAGTGGCTAGAGTGTGAGTCAAGAGATGGGAAGTTGCAGCAAACTTaGTGTTCCTTTCCTGCTAGG | + |
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Preference number: 2 (lower is better) Translates to: SETSMNFLQWLECESRDGKLQQT*CSFPAR Trigger: CCTAGCAGGAAAGGAACATCAAGTTTGCTGCAACTT...CCCATCTCTTGACTCACACTCTAGCCACTGAAGAAAGTTCATAGAGGTTTCTGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| 3UTR-3UTR GCA 90 bp | TTGGTTGAGATTTGTGCTTTGTACTTCCTGTGGAACAGTGTGTTCCACGCACAGTTCCTGCTAGGTGTGTaGTTTGATTGGCTTGATATG | + |
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Preference number: 2 (lower is better) Translates to: LVEICALYFLWNSVFHAQFLLGV*FDWLDM Trigger: CATATCAAGCCAATCAAAGCACACACCTAGCAGGAA...CTGTGCGTGGAACACACTGTTCCACAGGAAGTACAAAGCACAAATCTCAACCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| 3UTR-3UTR TCA 90 bp | AGTGGTCATTCTTTCAACCCACATGTCTCTCAACCCTACTTTCGACTGTCCACTTTTGTCCTGAATTCATaGATGAAGTTGGAGCCACAA | + |
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Preference number: 2 (lower is better) Translates to: SGHSFNPHVSQPYFRLSTFVLNS*MKLEPQ Trigger: TTGTGGCTCCAACTTCATTCATGAATTCAGGACAAA...AGTGGACAGTCGAAAGTAGGGTTGAGAGACATGTGGGTTGAAAGAATGACCACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| 3UTR-3UTR GCA 90 bp | TTGGTTGAGATTTGTGCTTTGTACTTCCTGTGGAACAGTGTGTTCCACGCACAGGATCAAGAATTATTTTaGAGCGAGACATGCGATTGT | + |
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Preference number: 2 (lower is better) Translates to: LVEICALYFLWNSVFHAQDQELF*SETCDC Trigger: ACAATCGCATGTCTCGCTGCAAAATAATTCTTGATC...CTGTGCGTGGAACACACTGTTCCACAGGAAGTACAAAGCACAAATCTCAACCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| 3UTR-3UTR GCA 90 bp | TTGGTTGAGATTTGTGCTTTGTACTTCCTGTGGAACAGTGTGTTCCACGCACAGCAGACTGCTTTAGCATaGTGTTTAACAGTCAAGAAA | + |
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Preference number: 2 (lower is better) Translates to: LVEICALYFLWNSVFHAQQTALA*CLTVKK Trigger: TTTCTTGACTGTTAAACAGCATGCTAAAGCAGTCTG...CTGTGCGTGGAACACACTGTTCCACAGGAAGTACAAAGCACAAATCTCAACCAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| 3UTR-3UTR CCA 90 bp | TTGGTTGAGATTTGTGCTTTGTACTTCCTGTGGAACAGTGTGTTCCACGCACAGTGCGATTGTGAAAGTTaGAACAAGTTGACAGTAGTA | + |
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Preference number: 2 (lower is better) Translates to: LVEICALYFLWNSVFHAQCDCES*NKLTVV Trigger: TACTACTGTCAACTTGTTCCAACTTTCACAATCGCA...CTGTGCGTGGAACACACTGTTCCACAGGAAGTACAAAGCACAAATCTCAACCAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| 3UTR-3UTR CCA 90 bp | AACCAAATGATTATTTTGGGGACTGCCATAGTGGTCATTCTTTCAACCCACATGTCCATGAAACATGTATaGTCCTTGCATTTGGGCACA | + |
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Preference number: 2 (lower is better) Translates to: NQMIILGTAIVVILSTHMSMKHV*SLHLGT Trigger: TGTGCCCAAATGCAAGGACCATACATGTTTCATGGA...CATGTGGGTTGAAAGAATGACCACTATGGCAGTCCCCAAAATAATCATTTGGTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| 3UTR-3UTR GCA 90 bp | ATCTTCTACCTATGGCATTTAAGAGGTATTTGGGATTTGTTCATCTCACATGTGAACATGTATGGTCCTTaGATTTGGGCACACAGAGAG | + |
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Preference number: 2 (lower is better) Translates to: IFYLWHLRGIWDLFISHVNMYGP*IWAHRE Trigger: CTCTCTGTGTGCCCAAATGCAAGGACCATACATGTT...CACATGTGAGATGAACAAATCCCAAATACCTCTTAAATGCCATAGGTAGAAGAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| 3UTR-3UTR TCA 90 bp | AACCAAATGATTATTTTGGGGACTGCCATAGTGGTCATTCTTTCAACCCACATGCATAATGTTTATGCATaGGTCCATCAGAAAGAGAAC | + |
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Preference number: 2 (lower is better) Translates to: NQMIILGTAIVVILSTHMHNVYA*VHQKEN Trigger: GTTCTCTTTCTGATGGACTCATGCATAAACATTATG...CATGTGGGTTGAAAGAATGACCACTATGGCAGTCCCCAAAATAATCATTTGGTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| 3UTR-3UTR CCA 90 bp | AACCAAATGATTATTTTGGGGACTGCCATAGTGGTCATTCTTTCAACCCACATGCAAAATGATAAATTATaGGTTCCAAGGCATACACGC | + |
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Preference number: 2 (lower is better) Translates to: NQMIILGTAIVVILSTHMQNDKL*VPRHTR Trigger: GCGTGTATGCCTTGGAACCCATAATTTATCATTTTG...CATGTGGGTTGAAAGAATGACCACTATGGCAGTCCCCAAAATAATCATTTGGTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| 3UTR TCA 72 bp | GGTTCCAAGGCATACACGCCATATTGGGGAGTGAGCTaGGCAGGTCCCTGCATGCGTATTTATTTTAGGTGC | + |
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Preference number: 3 (lower is better) Translates to: GSKAYTPYWGVS*AGPCMRIYFRC Trigger: GCACCTAAAATAAATACGCATGCAGGGACCTGCTCAGCTCACTCCCCAATATGGCGTGTATGCCTTGGAACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| 3UTR-3UTR CAA 90 bp | AGTGGTCATTCTTTCAACCCACATGTCTCTCAACCCTACTTTCGACTGTCCACTGTATGGTCCTTGCATTaGGGCACACAGAGAGAGCTC | + |
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Preference number: 3 (lower is better) Translates to: SGHSFNPHVSQPYFRLSTVWSLH*GTQREL Trigger: GAGCTCTCTCTGTGTGCCCAAATGCAAGGACCATAC...AGTGGACAGTCGAAAGTAGGGTTGAGAGACATGTGGGTTGAAAGAATGACCACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| 3UTR GCA 72 bp | GAGCCACAATGCAGCTACCAAGTCAAGAGCGCAGACTaGTTTAGCATGCTGTTTAACAGTCAAGAAACATCT | + |
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Preference number: 3 (lower is better) Translates to: EPQCSYQVKSAD*FSMLFNSQETS Trigger: AGATGTTTCTTGACTGTTAAACAGCATGCTAAAGCAGTCTGCGCTCTTGACTTGGTAGCTGCATTGTGGCTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| 3UTR CCA 72 bp | CTCTGTTTGGTTGAGATTTGTGCTTTGTACTTCCTGTaGAACAGTGTGTTCCACGCACAGGAATCCGTACAT | + |
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Preference number: 3 (lower is better) Translates to: LCLVEICALYFL*NSVFHAQESVH Trigger: ATGTACGGATTCCTGTGCGTGGAACACACTGTTCCACAGGAAGTACAAAGCACAAATCTCAACCAAACAGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| 3UTR CCA 72 bp | GGTGGGATTTCAGAAACCTCTATGAACTTTCTTCAGTaGCTAGAGTGTGAGTCAAGAGATGGGTGCTTAGAG | + |
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Preference number: 3 (lower is better) Translates to: GGISETSMNFLQ*LECESRDGCLE Trigger: CTCTAAGCACCCATCTCTTGACTCACACTCTAGCCACTGAAGAAAGTTCATAGAGGTTTCTGAAATCCCACC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| 3UTR TCA 72 bp | TCTCAACCCTACTTTCGACTGTCCACTCTGTTTGGTTaGGATTTGTGCTTTGTACTTCCTGTGGAACAGTGT | + |
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Preference number: 3 (lower is better) Translates to: SQPYFRLSTLFG*DLCFVLPVEQC Trigger: ACACTGTTCCACAGGAAGTACAAAGCACAAATCTCAACCAAACAGAGTGGACAGTCGAAAGTAGGGTTGAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| 3UTR GCA 72 bp | GCAGCTACCAAGTCAAGAGCGCAGACTGCTTTAGCATaGTGTTTAACAGTCAAGAAACATCTTCTACCTATG | + |
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Preference number: 3 (lower is better) Translates to: AATKSRAQTALA*CLTVKKHLLPM Trigger: CATAGGTAGAAGATGTTTCTTGACTGTTAAACAGCATGCTAAAGCAGTCTGCGCTCTTGACTTGGTAGCTGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| 3UTR CCA 72 bp | AACATAAAATGGCCTAGAGCCTCCATGAAACATGTATaGTCCTTGCATTTGGGCACACAGAGAGAGCTCTTT | + |
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Preference number: 3 (lower is better) Translates to: NIKWPRASMKHV*SLHLGTQRELF Trigger: AAAGAGCTCTCTCTGTGTGCCCAAATGCAAGGACCATACATGTTTCATGGAGGCTCTAGGCCATTTTATGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| 3UTR CCA 72 bp | TGTCTCTCAACCCTACTTTCGACTGTCCACTCTGTTTaGTTGAGATTTGTGCTTTGTACTTCCTGTGGAACA | + |
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Preference number: 3 (lower is better) Translates to: CLSTLLSTVHSV*LRFVLCTSCGT Trigger: TGTTCCACAGGAAGTACAAAGCACAAATCTCAACCAAACAGAGTGGACAGTCGAAAGTAGGGTTGAGAGACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| 3UTR-3UTR CAA 90 bp | TCAGAAACCTCTATGAACTTTCTTCAGTGGCTAGAGTGTGAGTCAAGAGATGGGTATAAAGCATTTCCCTaGCTGCTTCACACCTTCCAT | + |
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Preference number: 3 (lower is better) Translates to: SETSMNFLQWLECESRDGYKAFP*LLHTFH Trigger: ATGGAAGGTGTGAAGCAGCAAGGGAAATGCTTTATA...CCCATCTCTTGACTCACACTCTAGCCACTGAAGAAAGTTCATAGAGGTTTCTGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| 3UTR CCA 72 bp | ACAGTAGTAGTTTTCCCAGACAGGTACAACATAAAATaGCCTAGAGCCTCCATGAAACATGTATGGTCCTTG | + |
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Preference number: 3 (lower is better) Translates to: TVVVFPDRYNIK*PRASMKHVWSL Trigger: CAAGGACCATACATGTTTCATGGAGGCTCTAGGCCATTTTATGTTGTACCTGTCTGGGAAAACTACTACTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| 3UTR-3UTR CAA 90 bp | CAGGAATCCGTACATGCATGTCTATATAAAGCATTTCCCTTGCTGCTTCACACCGAAAGTTGGAACAAGTaGACAGTAGTAGTTTTCCCA | + |
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Preference number: 3 (lower is better) Translates to: QESVHACLYKAFPLLLHTESWNK*TVVVFP Trigger: TGGGAAAACTACTACTGTCAACTTGTTCCAACTTTC...GGTGTGAAGCAGCAAGGGAAATGCTTTATATAGACATGCATGTACGGATTCCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| 3UTR-3UTR CAA 90 bp | CAGGAATCCGTACATGCATGTCTATATAAAGCATTTCCCTTGCTGCTTCACACCAGAGGTATTTGGGATTaGTTCATCTCACATGTGATC | + |
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Preference number: 3 (lower is better) Translates to: QESVHACLYKAFPLLLHTRGIWD*FISHVI Trigger: GATCACATGTGAGATGAACAAATCCCAAATACCTCT...GGTGTGAAGCAGCAAGGGAAATGCTTTATATAGACATGCATGTACGGATTCCTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| 3UTR-3UTR CAA 90 bp | TTGGTTGAGATTTGTGCTTTGTACTTCCTGTGGAACAGTGTGTTCCACGCACAGGCATTTAAGAGGTATTaGGGATTTGTTCATCTCACA | + |
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Preference number: 3 (lower is better) Translates to: LVEICALYFLWNSVFHAQAFKRY*GFVHLT Trigger: TGTGAGATGAACAAATCCCAAATACCTCTTAAATGC...CTGTGCGTGGAACACACTGTTCCACAGGAAGTACAAAGCACAAATCTCAACCAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| 3UTR CCA 72 bp | GGATCTTGGAACTGTCATGAACTCAGCATGTCATCTTaGAGTCACACATTCTTAGGGTTTCCTTTGTGTTTT | + |
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Preference number: 3 (lower is better) Translates to: GSWNCHELSMSS*SHTFLGFPLCF Trigger: AAAACACAAAGGAAACCCTAAGAATGTGTGACTCCAAGATGACATGCTGAGTTCATGACAGTTCCAAGATCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| 3UTR CCA 72 bp | CAGAACGATGAGACCATGTATCTAAGTACTTTGGGGTaGGATTTCAGAAACCTCTATGAACTTTCTTCAGTG | + |
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Preference number: 3 (lower is better) Translates to: QNDETMYLSTLG*DFRNLYELSSV Trigger: CACTGAAGAAAGTTCATAGAGGTTTCTGAAATCCCACCCCAAAGTACTTAGATACATGGTCTCATCGTTCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| 3UTR TCA 72 bp | GGTGATAAAACATTGAACATGAATGTAACAGAACGATaGGACCATGTATCTAAGTACTTTGGGGTGGGATTT | + |
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Preference number: 3 (lower is better) Translates to: GDKTLNMNVTER*DHVSKYFGVGF Trigger: AAATCCCACCCCAAAGTACTTAGATACATGGTCTCATCGTTCTGTTACATTCATGTTCAATGTTTTATCACC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| 3UTR-3UTR CAA 90 bp | CTGACAAACAGAAGTAAGGAAGGCAAAGATGTGATTATCATAGATCAAATTCCTCAGATTCAAGATTCATaGGAGAGGTTTCAAAGACAT | + |
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Preference number: 3 (lower is better) Translates to: LTNRSKEGKDVIIIDQIPQIQDS*ERFQRH Trigger: ATGTCTTTGAAACCTCTCCAATGAATCTTGAATCTG...AGGAATTTGATCTATGATAATCACATCTTTGCCTTCCTTACTTCTGTTTGTCAG 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| CDS-3UTR TCA 90 bp | AGTGGTCATTCTTTCAACCCACATGTCTCTCAACCCTACTTTCGACTGTCCACTAGGGGCAGCACAGGTTaGTGCACACTGTCTCACACG | + |
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Preference number: 4 (lower is better) Translates to: SGHSFNPHVSQPYFRLSTRGSTG*CTLSHT Trigger: CGTGTGAGACAGTGTGCATCAACCTGTGCTGCCCCT...AGTGGACAGTCGAAAGTAGGGTTGAGAGACATGTGGGTTGAAAGAATGACCACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| CDS-3UTR TCA 90 bp | CAGGAATCCGTACATGCATGTCTATATAAAGCATTTCCCTTGCTGCTTCACACCGGCAGAAGAGACAGGTaGGGACTAGGGAGGCACACT | + |
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Preference number: 4 (lower is better) Translates to: QESVHACLYKAFPLLLHTGRRDR*GLGRHT Trigger: AGTGTGCCTCCCTAGTCCTCACCTGTCTCTTCTGCC...GGTGTGAAGCAGCAAGGGAAATGCTTTATATAGACATGCATGTACGGATTCCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| CDS-3UTR CCA 90 bp | AGTGGTCATTCTTTCAACCCACATGTCTCTCAACCCTACTTTCGACTGTCCACTGGGGGTTTCCTGGGCTaGTCCATCTGTGATACTGAA | + |
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Preference number: 4 (lower is better) Translates to: SGHSFNPHVSQPYFRLSTGGFLG*SICDTE Trigger: TTCAGTATCACAGATGGACCAGCCCAGGAAACCCCC...AGTGGACAGTCGAAAGTAGGGTTGAGAGACATGTGGGTTGAAAGAATGACCACT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| 3UTR CAA 72 bp | ATGATAAATTATGGGTTCCAAGGCATACACGCCATATaGGGGAGTGAGCTGAGCAGGTCCCTGCATGCGTAT | + |
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Preference number: 4 (lower is better) Translates to: MINYGFQGIHAI*GSELSRSLHAY Trigger: ATACGCATGCAGGGACCTGCTCAGCTCACTCCCCAATATGGCGTGTATGCCTTGGAACCCATAATTTATCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| CDS-3UTR CCA 90 bp | TGTATGGTCCTTGCATTTGGGCACACAGAGAGAGCTCTTTATCTCAGATGCACTGTTGCAGTCATTGTGTaGATGGTTCTCATCGGAGGC | + |
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Preference number: 4 (lower is better) Translates to: CMVLAFGHTERALYLRCTVAVIV*MVLIGG Trigger: GCCTCCGATGAGAACCATCCACACAATGACTGCAAC...AGTGCATCTGAGATAAAGAGCTCTCTCTGTGTGCCCAAATGCAAGGACCATACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| CDS-3UTR CCA 90 bp | CAGGAATCCGTACATGCATGTCTATATAAAGCATTTCCCTTGCTGCTTCACACCGCTCCAGGCATTCACTaGTCTCATGGCAGGATTCAA | + |
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Preference number: 4 (lower is better) Translates to: QESVHACLYKAFPLLLHTAPGIH*SHGRIQ Trigger: TTGAATCCTGCCATGAGACCAGTGAATGCCTGGAGC...GGTGTGAAGCAGCAAGGGAAATGCTTTATATAGACATGCATGTACGGATTCCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| CDS-3UTR TCA 90 bp | TCAGAAACCTCTATGAACTTTCTTCAGTGGCTAGAGTGTGAGTCAAGAGATGGGTCGGTAACAGATTTCTaGTATCTCCATGGCCAGCTC | + |
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Preference number: 4 (lower is better) Translates to: SETSMNFLQWLECESRDGSVTDF*YLHGQL Trigger: GAGCTGGCCATGGAGATATCAGAAATCTGTTACCGA...CCCATCTCTTGACTCACACTCTAGCCACTGAAGAAAGTTCATAGAGGTTTCTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| CDS-3UTR GCA 90 bp | TCAGAAACCTCTATGAACTTTCTTCAGTGGCTAGAGTGTGAGTCAAGAGATGGGCATCGCAGGTCAAGTTaGAGTCATTGTGTGGATGGT | + |
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Preference number: 4 (lower is better) Translates to: SETSMNFLQWLECESRDGHRRSS*SHCVDG Trigger: ACCATCCACACAATGACTGCAACTTGACCTGCGATG...CCCATCTCTTGACTCACACTCTAGCCACTGAAGAAAGTTCATAGAGGTTTCTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| CDS-3UTR CCA 90 bp | AGCGCAGACTGCTTTAGCATGCTGTTTAACAGTCAAGAAACATCTTCTACCTATAGGCAGTCCAAGAACTaGCAGAAGAGACAGGTGAGG | + |
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Preference number: 4 (lower is better) Translates to: SADCFSMLFNSQETSSTYRQSKN*QKRQVR Trigger: CCTCACCTGTCTCTTCTGCCAGTTCTTGGACTGCCT...ATAGGTAGAAGATGTTTCTTGACTGTTAAACAGCATGCTAAAGCAGTCTGCGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| 3UTR CAA 72 bp | AAATGGCCTAGAGCCTCCATGAAACATGTATGGTCCTaGCATTTGGGCACACAGAGAGAGCTCTTTATCTCA | + |
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Preference number: 4 (lower is better) Translates to: KWPRASMKHVWS*HLGTQRELFIS Trigger: TGAGATAAAGAGCTCTCTCTGTGTGCCCAAATGCAAGGACCATACATGTTTCATGGAGGCTCTAGGCCATTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| 3UTR CAA 72 bp | CTCTCAACCCTACTTTCGACTGTCCACTCTGTTTGGTaGAGATTTGTGCTTTGTACTTCCTGTGGAACAGTG | + |
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Preference number: 4 (lower is better) Translates to: LSTLLSTVHSVW*RFVLCTSCGTV Trigger: CACTGTTCCACAGGAAGTACAAAGCACAAATCTCAACCAAACAGAGTGGACAGTCGAAAGTAGGGTTGAGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| 3UTR CAA 72 bp | ATGTCTCTCAACCCTACTTTCGACTGTCCACTCTGTTaGGTTGAGATTTGTGCTTTGTACTTCCTGTGGAAC | + |
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Preference number: 4 (lower is better) Translates to: MSLNPTFDCPLC*VEICALYFLWN Trigger: GTTCCACAGGAAGTACAAAGCACAAATCTCAACCAAACAGAGTGGACAGTCGAAAGTAGGGTTGAGAGACAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| CDS-3UTR TCA 90 bp | AGTGGTCATTCTTTCAACCCACATGTCTCTCAACCCTACTTTCGACTGTCCACTCATGCTTTTCATTCGTaGGTTGCGTATCTTCTTTTA | + |
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Preference number: 4 (lower is better) Translates to: SGHSFNPHVSQPYFRLSTHAFHS*VAYLLL Trigger: TAAAAGAAGATACGCAACTCACGAATGAAAAGCATG...AGTGGACAGTCGAAAGTAGGGTTGAGAGACATGTGGGTTGAAAGAATGACCACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| CDS-3UTR CCA 90 bp | CATCTTCTACCTATGGCATTTAAGAGGTATTTGGGATTTGTTCATCTCACATGTTCATTGGGGGTTTCCTaGGCTGGTCCATCTGTGATA | + |
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Preference number: 4 (lower is better) Translates to: HLLPMAFKRYLGFVHLTCSLGVS*AGPSVI Trigger: TATCACAGATGGACCAGCCCAGGAAACCCCCAATGA...ACATGTGAGATGAACAAATCCCAAATACCTCTTAAATGCCATAGGTAGAAGATG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| CDS-3UTR CCA 90 bp | ATCTTCTACCTATGGCATTTAAGAGGTATTTGGGATTTGTTCATCTCACATGTGACAGGTTTTTCTCATTaGGGGTTTCCTGGGCTGGTC | + |
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Preference number: 4 (lower is better) Translates to: IFYLWHLRGIWDLFISHVTGFSH*GFPGLV Trigger: GACCAGCCCAGGAAACCCCCAATGAGAAAAACCTGT...CACATGTGAGATGAACAAATCCCAAATACCTCTTAAATGCCATAGGTAGAAGAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| CDS-3UTR CCA 90 bp | AACCAAATGATTATTTTGGGGACTGCCATAGTGGTCATTCTTTCAACCCACATGCATTCACTGGTCTCATaGCAGGATTCAAAGAGACTA | + |
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Preference number: 4 (lower is better) Translates to: NQMIILGTAIVVILSTHMHSLVS*QDSKRL Trigger: TAGTCTCTTTGAATCCTGCCATGAGACCAGTGAATG...CATGTGGGTTGAAAGAATGACCACTATGGCAGTCCCCAAAATAATCATTTGGTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| CDS-3UTR CCA 90 bp | ATCTTCTACCTATGGCATTTAAGAGGTATTTGGGATTTGTTCATCTCACATGTGTTTCTGATATCTCCATaGCCAGCTCCAGGCATTCAC | + |
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Preference number: 4 (lower is better) Translates to: IFYLWHLRGIWDLFISHVFLISP*PAPGIH Trigger: GTGAATGCCTGGAGCTGGCCATGGAGATATCAGAAA...CACATGTGAGATGAACAAATCCCAAATACCTCTTAAATGCCATAGGTAGAAGAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| CDS-3UTR TCA 90 bp | AGCGCAGACTGCTTTAGCATGCTGTTTAACAGTCAAGAAACATCTTCTACCTATATCTCTCCGATGAACTaGAGTATTAGTTTGGAGGTA | + |
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Preference number: 4 (lower is better) Translates to: SADCFSMLFNSQETSSTYISPMN*SISLEV Trigger: TACCTCCAAACTAATACTTCAGTTCATCGGAGAGAT...ATAGGTAGAAGATGTTTCTTGACTGTTAAACAGCATGCTAAAGCAGTCTGCGCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| CDS-3UTR GCA 90 bp | CAGGAATCCGTACATGCATGTCTATATAAAGCATTTCCCTTGCTGCTTCACACCTTGCCATTTTCAAAATaGTCGGCTGTTCTTACTTTT | + |
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Preference number: 4 (lower is better) Translates to: QESVHACLYKAFPLLLHTLPFSK*SAVLTF Trigger: AAAAGTAAGAACAGCCGAGCATTTTGAAAATGGCAA...GGTGTGAAGCAGCAAGGGAAATGCTTTATATAGACATGCATGTACGGATTCCTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| CDS-3UTR GCA 90 bp | CTGACAAACAGAAGTAAGGAAGGCAAAGATGTGATTATCATAGATCAAATTCCTGGTTTCTCGTCTGCATaGTTTTCATTCGTGAGTTGC | + |
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Preference number: 4 (lower is better) Translates to: LTNRSKEGKDVIIIDQIPGFSSA*FSFVSC Trigger: GCAACTCACGAATGAAAAGCATGCAGACGAGAAACC...AGGAATTTGATCTATGATAATCACATCTTTGCCTTCCTTACTTCTGTTTGTCAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| 3UTR CAA 72 bp | AGTAGAATACAACACTGCAAAAACCAAATGATTATTTaGGGGACTGCCATAGTGGTCATTCTTTCAACCCAC | + |
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Preference number: 4 (lower is better) Translates to: SRIQHCKNQMII*GTAIVVILSTH Trigger: GTGGGTTGAAAGAATGACCACTATGGCAGTCCCCAAAATAATCATTTGGTTTTTGCAGTGTTGTATTCTACT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| CDS-3UTR TCA 90 bp | CTGACAAACAGAAGTAAGGAAGGCAAAGATGTGATTATCATAGATCAAATTCCTTCAGCATCTCTCCGATaGACTGAAGTATTAGTTTGG | + |
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Preference number: 4 (lower is better) Translates to: LTNRSKEGKDVIIIDQIPSASLR*TEVLVW Trigger: CCAAACTAATACTTCAGTTCATCGGAGAGATGCTGA...AGGAATTTGATCTATGATAATCACATCTTTGCCTTCCTTACTTCTGTTTGTCAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| CDS-3UTR GCA 90 bp | ATCTTCTACCTATGGCATTTAAGAGGTATTTGGGATTTGTTCATCTCACATGTGAATAGGTTTCTCGTCTaGATGCTTTTCATTCGTGAG | + |
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Preference number: 4 (lower is better) Translates to: IFYLWHLRGIWDLFISHVNRFLV*MLFIRE Trigger: CTCACGAATGAAAAGCATGCAGACGAGAAACCTATT...CACATGTGAGATGAACAAATCCCAAATACCTCTTAAATGCCATAGGTAGAAGAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| CDS CCA 90 bp | ACTGTCTCACACGTGTCAGGGAGCATGAAGAGGCAGTCCAAGAACTaGCAGAAGAGACAGGTGAGGACTAGGGAGGCACACTCCTCATCA | + |
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Preference number: 5 (lower is better) Translates to: TVSHVSGSMKRQSKN*QKRQVRTREAHSSS Trigger: TGATGAGGAGTGTGCCTCCCTAGTCCTCACCTGTCTCTTCTGCCAGTTCTTGGACTGCCTCTTCATGCTCCCTGACACGTGTGAGACAGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| CDS CCA 90 bp | AAAGAGACTACAGTCCACATCGCAGGTCAAGTTGCAGTCATTGTGTaGATGGTTCTCATCGGAGGCAGAGTAGTACCTGTGAGAGGGGCA | + |
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Preference number: 5 (lower is better) Translates to: KETTVHIAGQVAVIV*MVLIGGRVVPVRGA Trigger: TGCCCCTCTCACAGGTACTACTCTGCCTCCGATGAGAACCATCCACACAATGACTGCAACTTGACCTGCGATGTGGACTGTAGTCTCTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| CDS CCA 90 bp | GGTAACAGATTTCTGATATCTCCATGGCCAGCTCCAGGCATTCACTaGTCTCATGGCAGGATTCAAAGAGACTACAGTCCACATCGCAGG | + |
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Preference number: 5 (lower is better) Translates to: GNRFLISPWPAPGIH*SHGRIQRDYSPHRR Trigger: CCTGCGATGTGGACTGTAGTCTCTTTGAATCCTGCCATGAGACCAGTGAATGCCTGGAGCTGGCCATGGAGATATCAGAAATCTGTTACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| CDS GCA 90 bp | GGTAGGGAAATTTCGTTTGGCATTCTTCAAGGGAAGAGAGTGAAGTaGTCGATCCTGACAGGTTTTTCTCATTGGGGGTTTCCTGGGCTG | + |
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Preference number: 5 (lower is better) Translates to: GREISFGILQGKRVK*SILTGFSHWGFPGL Trigger: CAGCCCAGGAAACCCCCAATGAGAAAAACCTGTCAGGATCGAGCACTTCACTCTCTTCCCTTGAAGAATGCCAAACGAAATTTCCCTACC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| CDS CCA 90 bp | AGTGAAGTGCTCGATCCTGACAGGTTTTTCTCATTGGGGGTTTCCTaGGCTGGTCCATCTGTGATACTGAATTCGGATACTGAATTTATT | + |
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Preference number: 5 (lower is better) Translates to: SEVLDPDRFFSLGVS*AGPSVILNSDTEFI Trigger: AATAAATTCAGTATCCGAATTCAGTATCACAGATGGACCAGCCCAGGAAACCCCCAATGAGAAAAACCTGTCAGGATCGAGCACTTCACT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| CDS TCA 90 bp | GGGGGTTTCCTGGGCTGGTCCATCTGTGATACTGAATTCGGATACTaGATTTATTACGATAGCATTAATAGGTTTCTCGTCTGCATGCTT | + |
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Preference number: 5 (lower is better) Translates to: GGFLGWSICDTEFGY*IYYDSINRFLVCML Trigger: AAGCATGCAGACGAGAAACCTATTAATGCTATCGTAATAAATTCAGTATCCGAATTCAGTATCACAGATGGACCAGCCCAGGAAACCCCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| CDS-3UTR CAA 90 bp | ATCTTCTACCTATGGCATTTAAGAGGTATTTGGGATTTGTTCATCTCACATGTGGACAGGTTTTTCTCATaGGGGGTTTCCTGGGCTGGT | + |
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Preference number: 5 (lower is better) Translates to: IFYLWHLRGIWDLFISHVDRFFS*GVSWAG Trigger: ACCAGCCCAGGAAACCCCCAATGAGAAAAACCTGTC...CACATGTGAGATGAACAAATCCCAAATACCTCTTAAATGCCATAGGTAGAAGAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| CDS-3UTR CAA 90 bp | TCAGAAACCTCTATGAACTTTCTTCAGTGGCTAGAGTGTGAGTCAAGAGATGGGGTAGGGAAATTTCGTTaGGCATTCTTCAAGGGAAGA | + |
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Preference number: 5 (lower is better) Translates to: SETSMNFLQWLECESRDGVGKFR*AFFKGR Trigger: TCTTCCCTTGAAGAATGCCAAACGAAATTTCCCTAC...CCCATCTCTTGACTCACACTCTAGCCACTGAAGAAAGTTCATAGAGGTTTCTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| CDS GCA 90 bp | GATACTGAATTTATTACGATAGCATTAATAGGTTTCTCGTCTGCATaGTTTTCATTCGTGAGTTGCGTATCTTCTTTTAACCAAGGAAGG | + |
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Preference number: 5 (lower is better) Translates to: DTEFITIALIGFSSA*FSFVSCVSSFNQGR Trigger: CCTTCCTTGGTTAAAAGAAGATACGCAACTCACGAATGAAAAGCATGCAGACGAGAAACCTATTAATGCTATCGTAATAAATTCAGTATC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| CDS CCA 72 bp | ACAGTCCACATCGCAGGTCAAGTTGCAGTCATTGTGTaGATGGTTCTCATCGGAGGCAGAGTAGTACCTGTG | + |
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Preference number: 6 (lower is better) Translates to: TVHIAGQVAVIV*MVLIGGRVVPV Trigger: CACAGGTACTACTCTGCCTCCGATGAGAACCATCCACACAATGACTGCAACTTGACCTGCGATGTGGACTGT 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| CDS CAA 90 bp | TCAAGGGAAGAGAGTGAAGTGCTCGATCCTGACAGGTTTTTCTCATaGGGGGTTTCCTGGGCTGGTCCATCTGTGATACTGAATTCGGAT | + |
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Preference number: 6 (lower is better) Translates to: SREESEVLDPDRFFS*GVSWAGPSVILNSD Trigger: ATCCGAATTCAGTATCACAGATGGACCAGCCCAGGAAACCCCCAATGAGAAAAACCTGTCAGGATCGAGCACTTCACTCTCTTCCCTTGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| CDS GCA 72 bp | ATTCAAAGAGACTACAGTCCACATCGCAGGTCAAGTTaGAGTCATTGTGTGGATGGTTCTCATCGGAGGCAG | + |
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Preference number: 6 (lower is better) Translates to: IQRDYSPHRRSS*SHCVDGSHRRQ Trigger: CTGCCTCCGATGAGAACCATCCACACAATGACTGCAACTTGACCTGCGATGTGGACTGTAGTCTCTTTGAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| CDS CCA 72 bp | CTCGATCCTGACAGGTTTTTCTCATTGGGGGTTTCCTaGGCTGGTCCATCTGTGATACTGAATTCGGATACT | + |
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Preference number: 6 (lower is better) Translates to: LDPDRFFSLGVS*AGPSVILNSDT Trigger: AGTATCCGAATTCAGTATCACAGATGGACCAGCCCAGGAAACCCCCAATGAGAAAAACCTGTCAGGATCGAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| CDS CCA 72 bp | TTTCTGATATCTCCATGGCCAGCTCCAGGCATTCACTaGTCTCATGGCAGGATTCAAAGAGACTACAGTCCA | + |
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Preference number: 6 (lower is better) Translates to: FLISPWPAPGIH*SHGRIQRDYSP Trigger: TGGACTGTAGTCTCTTTGAATCCTGCCATGAGACCAGTGAATGCCTGGAGCTGGCCATGGAGATATCAGAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| CDS TCA 72 bp | GGAGGCACACTCCTCATCAGCATCTCTCCGATGAACTaGAGTATTAGTTTGGAGGTAGGGAAATTTCGTTTG | + |
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Preference number: 6 (lower is better) Translates to: GGTLLISISPMN*SISLEVGKFRL Trigger: CAAACGAAATTTCCCTACCTCCAAACTAATACTTCAGTTCATCGGAGAGATGCTGATGAGGAGTGTGCCTCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| CDS GCA 72 bp | ATTTCGTTTGGCATTCTTCAAGGGAAGAGAGTGAAGTaGTCGATCCTGACAGGTTTTTCTCATTGGGGGTTT | + |
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Preference number: 6 (lower is better) Translates to: ISFGILQGKRVK*SILTGFSHWGF Trigger: AAACCCCCAATGAGAAAAACCTGTCAGGATCGAGCACTTCACTCTCTTCCCTTGAAGAATGCCAAACGAAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| CDS TCA 72 bp | CTGGGCTGGTCCATCTGTGATACTGAATTCGGATACTaGATTTATTACGATAGCATTAATAGGTTTCTCGTC | + |
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Preference number: 6 (lower is better) Translates to: LGWSICDTEFGY*IYYDSINRFLV Trigger: GACGAGAAACCTATTAATGCTATCGTAATAAATTCAGTATCCGAATTCAGTATCACAGATGGACCAGCCCAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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| CDS GCA 72 bp | TTTATTACGATAGCATTAATAGGTTTCTCGTCTGCATaGTTTTCATTCGTGAGTTGCGTATCTTCTTTTAAC | + |
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Preference number: 6 (lower is better) Translates to: FITIALIGFSSA*FSFVSCVSSFN Trigger: GTTAAAAGAAGATACGCAACTCACGAATGAAAAGCATGCAGACGAGAAACCTATTAATGCTATCGTAATAAA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164491.3 |
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