Pregenerated sensors for MCUB (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027994Ensembl transcript IDs: ENSMUST00000029624.15, ENSMUST00000122961.2, ENSMUST00000146340.2, ENSMUST00000153506.8
Found 57 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TGCAGGAATGAGCCTACTGTCGACAACATCGGCTTGACTACAAACTaGCAGCGCTCTTTTCTGGATGGCAGAGTGAGGGTTACCAAGGGA | + |
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Preference number: 1 (lower is better) Translates to: CRNEPTVDNIGLTTN*QRSFLDGRVRVTKG Trigger: TCCCTTGGTAACCCTCACTCTGCCATCCAGAAAAGAGCGCTGCCAGTTTGTAGTCAAGCCGATGTTGTCGACAGTAGGCTCATTCCTGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000122961.2 |
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| 3UTR GCA 90 bp | ATGATGGCTGCAGTTTTGATGCCTTTATCCTCATTCTGTAAGTCCTaGAGGAATGAGCCTACTGTCGACAACATCGGCTTGACTACAAAC | + |
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Preference number: 1 (lower is better) Translates to: MMAAVLMPLSSFCKS*RNEPTVDNIGLTTN Trigger: GTTTGTAGTCAAGCCGATGTTGTCGACAGTAGGCTCATTCCTGCAGGACTTACAGAATGAGGATAAAGGCATCAAAACTGCAGCCATCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000122961.2 |
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| 3UTR CAA 90 bp | ATGAAAACGTCAAGCGGAAATGAACAAGACCTTAAAAACATCCAGTaGGTAAGCTATCAGACCAGCACATCGCCTGCTGAGTTTAAAGTG | + |
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Preference number: 2 (lower is better) Translates to: MKTSSGNEQDLKNIQ*VSYQTSTSPAEFKV Trigger: CACTTTAAACTCAGCAGGCGATGTGCTGGTCTGATAGCTTACCAACTGGATGTTTTTAAGGTCTTGTTCATTTCCGCTTGACGTTTTCAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029624.15 ENSMUST00000153506.8 |
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| 3UTR TCA 72 bp | CCTGCAGGAATGAGCCTACTGTCGACAACATCGGCTTaGCTACAAACTGGCAGCGCTCTTTTCTGGATGGCA | + |
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Preference number: 3 (lower is better) Translates to: PAGMSLLSTTSA*LQTGSALFWMA Trigger: TGCCATCCAGAAAAGAGCGCTGCCAGTTTGTAGTCAAGCCGATGTTGTCGACAGTAGGCTCATTCCTGCAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000122961.2 |
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| 3UTR CCA 72 bp | GAGCCTACTGTCGACAACATCGGCTTGACTACAAACTaGCAGCGCTCTTTTCTGGATGGCAGAGTGAGGGTT | + |
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Preference number: 3 (lower is better) Translates to: EPTVDNIGLTTN*QRSFLDGRVRV Trigger: AACCCTCACTCTGCCATCCAGAAAAGAGCGCTGCCAGTTTGTAGTCAAGCCGATGTTGTCGACAGTAGGCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000122961.2 |
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| 3UTR CCA 72 bp | CTGCTGAGTTTAAAGTGTGTGTCTAGTTCTTCTCGCTaGCTTCCTCTCCTTGGATTCGCAAGCGGAGGGAGC | + |
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Preference number: 3 (lower is better) Translates to: LLSLKCVSSSSR*LPLLGFASGGS Trigger: GCTCCCTCCGCTTGCGAATCCAAGGAGAGGAAGCCAGCGAGAAGAACTAGACACACACTTTAAACTCAGCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153506.8 |
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| 3UTR GCA 72 bp | GCAGTTTTGATGCCTTTATCCTCATTCTGTAAGTCCTaGAGGAATGAGCCTACTGTCGACAACATCGGCTTG | + |
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Preference number: 3 (lower is better) Translates to: AVLMPLSSFCKS*RNEPTVDNIGL Trigger: CAAGCCGATGTTGTCGACAGTAGGCTCATTCCTGCAGGACTTACAGAATGAGGATAAAGGCATCAAAACTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000122961.2 |
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| CDS-3UTR CCA 90 bp | GCCTACTGTCGACAACATCGGCTTGACTACAAACTGGCAGCGCTCTTTTCTGGATTTCTGGGGTGTGGATaGCAGCTCCCTGGGATCCCC | + |
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Preference number: 4 (lower is better) Translates to: AYCRQHRLDYKLAALFSGFLGCG*QLPGIP Trigger: GGGGATCCCAGGGAGCTGCCATCCACACCCCAGAAA...TCCAGAAAAGAGCGCTGCCAGTTTGTAGTCAAGCCGATGTTGTCGACAGTAGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000122961.2 |
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| 3UTR CAA 72 bp | TCCTGCAGGAATGAGCCTACTGTCGACAACATCGGCTaGACTACAAACTGGCAGCGCTCTTTTCTGGATGGC | + |
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Preference number: 4 (lower is better) Translates to: SCRNEPTVDNIG*TTNWQRSFLDG Trigger: GCCATCCAGAAAAGAGCGCTGCCAGTTTGTAGTCAAGCCGATGTTGTCGACAGTAGGCTCATTCCTGCAGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000122961.2 |
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| CDS-3UTR GCA 90 bp | TGTATGAAAACGTCAAGCGGAAATGAACAAGACCTTAAAAACATCCAGTTGGTAGGCCGCAGCTGTTCCTaGAGGTGGTCGATCTTCGCC | + |
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Preference number: 4 (lower is better) Translates to: CMKTSSGNEQDLKNIQLVGRSCS*RWSIFA Trigger: GGCGAAGATCGACCACCTGCAGGAACAGCTGCGGCC...TACCAACTGGATGTTTTTAAGGTCTTGTTCATTTCCGCTTGACGTTTTCATACA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029624.15 |
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| CDS-3UTR CCA 90 bp | AACTGTATGAAAACGTCAAGCGGAAATGAACAAGACCTTAAAAACATCCAGTTGCCCACAGGAGACCACTaGTGTTGGCTTCCGACCGGG | + |
|
Preference number: 4 (lower is better) Translates to: NCMKTSSGNEQDLKNIQLPTGDH*CWLPTG Trigger: CCCGGTCGGAAGCCAACACCAGTGGTCTCCTGTGGG...CAACTGGATGTTTTTAAGGTCTTGTTCATTTCCGCTTGACGTTTTCATACAGTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029624.15 ENSMUST00000153506.8 |
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| 3UTR CAA 72 bp | ATTTCACTGCCATCTGCCGTGATGATGGCTGCAGTTTaGATGCCTTTATCCTCATTCTGTAAGTCCTGCAGG | + |
|
Preference number: 4 (lower is better) Translates to: ISLPSAVMMAAV*MPLSSFCKSCR Trigger: CCTGCAGGACTTACAGAATGAGGATAAAGGCATCAAAACTGCAGCCATCATCACGGCAGATGGCAGTGAAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000122961.2 |
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| CDS-3UTR CCA 90 bp | GAACAAGACCTTAAAAACATCCAGTTGGTAAGCTATCAGACCAGCACATCGCCTCAGGAAGAAGGTAACTaGCTCCATGATATCCCAGGA | + |
|
Preference number: 4 (lower is better) Translates to: EQDLKNIQLVSYQTSTSPQEEGN*LHDIPG Trigger: TCCTGGGATATCATGGAGCCAGTTACCTTCTTCCTG...AGGCGATGTGCTGGTCTGATAGCTTACCAACTGGATGTTTTTAAGGTCTTGTTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029624.15 ENSMUST00000153506.8 |
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| 3UTR CAA 72 bp | TCAAGCGGAAATGAACAAGACCTTAAAAACATCCAGTaGGTAAGCTATCAGACCAGCACATCGCCTGCTGAG | + |
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Preference number: 4 (lower is better) Translates to: SSGNEQDLKNIQ*VSYQTSTSPAE Trigger: CTCAGCAGGCGATGTGCTGGTCTGATAGCTTACCAACTGGATGTTTTTAAGGTCTTGTTCATTTCCGCTTGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029624.15 ENSMUST00000153506.8 |
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| CDS-3UTR GCA 90 bp | GAACAAGACCTTAAAAACATCCAGTTGGTAAGCTATCAGACCAGCACATCGCCTTCATTCTGTAAGTCCTaGAGGAATGAGCCTACTGTC | + |
|
Preference number: 4 (lower is better) Translates to: EQDLKNIQLVSYQTSTSPSFCKS*RNEPTV Trigger: GACAGTAGGCTCATTCCTGCAGGACTTACAGAATGA...AGGCGATGTGCTGGTCTGATAGCTTACCAACTGGATGTTTTTAAGGTCTTGTTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029624.15 ENSMUST00000153506.8 |
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| CDS-3UTR CCA 90 bp | AATGAACAAGACCTTAAAAACATCCAGTTGGTAAGCTATCAGACCAGCACATCGCGCTCTCGTCTCTTCTaGATCTCCTCTAAATGCAGG | + |
|
Preference number: 4 (lower is better) Translates to: NEQDLKNIQLVSYQTSTSRSRLF*ISSKCR Trigger: CCTGCATTTAGAGGAGATCCAGAAGAGACGAGAGCG...CGATGTGCTGGTCTGATAGCTTACCAACTGGATGTTTTTAAGGTCTTGTTCATT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029624.15 |
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| CDS-3UTR GCA 90 bp | TCAAGCGGAAATGAACAAGACCTTAAAAACATCCAGTTGGTAAGCTATCAGACCCGACCGGGCTTCTATTaGAGCTTTGACCTTTCTTGT | + |
|
Preference number: 4 (lower is better) Translates to: SSGNEQDLKNIQLVSYQTRPGFY*SFDLSC Trigger: ACAAGAAAGGTCAAAGCTGCAATAGAAGCCCGGTCG...GGTCTGATAGCTTACCAACTGGATGTTTTTAAGGTCTTGTTCATTTCCGCTTGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000153506.8 |
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| CDS-3UTR TCA 90 bp | AATGAACAAGACCTTAAAAACATCCAGTTGGTAAGCTATCAGACCAGCACATCGGGCTCTTCTTTCTTGTaGCACCGTATATCATACCGT | + |
|
Preference number: 4 (lower is better) Translates to: NEQDLKNIQLVSYQTSTSGSSFL*HRISYR Trigger: ACGGTATGATATACGGTGTCACAAGAAAGAAGAGCC...CGATGTGCTGGTCTGATAGCTTACCAACTGGATGTTTTTAAGGTCTTGTTCATT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029624.15 |
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| CDS-3UTR TCA 90 bp | GAACAAGACCTTAAAAACATCCAGTTGGTAAGCTATCAGACCAGCACATCGCCTATAGTGAATAGTCTGTaGACCAAGGACTTGGTGTTT | + |
|
Preference number: 4 (lower is better) Translates to: EQDLKNIQLVSYQTSTSPIVNSL*TKDLVF Trigger: AAACACCAAGTCCTTGGTTCACAGACTATTCACTAT...AGGCGATGTGCTGGTCTGATAGCTTACCAACTGGATGTTTTTAAGGTCTTGTTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029624.15 |
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| CDS-3UTR TCA 90 bp | TGTATGAAAACGTCAAGCGGAAATGAACAAGACCTTAAAAACATCCAGTTGGTATTCTTGTGGAAGAACTaGAGAAACTGCCTGCTCCGG | + |
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Preference number: 4 (lower is better) Translates to: CMKTSSGNEQDLKNIQLVFLWKN*RNCLLR Trigger: CCGGAGCAGGCAGTTTCTTCAGTTCTTCCACAAGAA...TACCAACTGGATGTTTTTAAGGTCTTGTTCATTTCCGCTTGACGTTTTCATACA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029624.15 ENSMUST00000153506.8 |
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| CDS-3UTR CCA 90 bp | CCAAACTGTATGAAAACGTCAAGCGGAAATGAACAAGACCTTAAAAACATCCAGCAGGAAGAAGGTAACTaGCTCCATGATATCCCAGGA | + |
|
Preference number: 4 (lower is better) Translates to: PNCMKTSSGNEQDLKNIQQEEGN*LHDIPG Trigger: TCCTGGGATATCATGGAGCCAGTTACCTTCTTCCTG...CTGGATGTTTTTAAGGTCTTGTTCATTTCCGCTTGACGTTTTCATACAGTTTGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029624.15 ENSMUST00000153506.8 |
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| CDS-3UTR GCA 90 bp | CCAAACTGTATGAAAACGTCAAGCGGAAATGAACAAGACCTTAAAAACATCCAGTCATTCTGTAAGTCCTaGAGGAATGAGCCTACTGTC | + |
|
Preference number: 4 (lower is better) Translates to: PNCMKTSSGNEQDLKNIQSFCKS*RNEPTV Trigger: GACAGTAGGCTCATTCCTGCAGGACTTACAGAATGA...CTGGATGTTTTTAAGGTCTTGTTCATTTCCGCTTGACGTTTTCATACAGTTTGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029624.15 ENSMUST00000153506.8 |
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| CDS-3UTR CCA 90 bp | TCAAGCGGAAATGAACAAGACCTTAAAAACATCCAGTTGGTAAGCTATCAGACCCATATGCTCTCCACTTaGCTCTTCTTTCTTGTGACA | + |
|
Preference number: 4 (lower is better) Translates to: SSGNEQDLKNIQLVSYQTHMLST*LFFLVT Trigger: TGTCACAAGAAAGAAGAGCCAAGTGGAGAGCATATG...GGTCTGATAGCTTACCAACTGGATGTTTTTAAGGTCTTGTTCATTTCCGCTTGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029624.15 |
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| CDS-3UTR GCA 90 bp | AATGAACAAGACCTTAAAAACATCCAGTTGGTAAGCTATCAGACCAGCACATCGTGTCCCATAATGGAGTaGTTGGTGGTATTTTGGATT | + |
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Preference number: 4 (lower is better) Translates to: NEQDLKNIQLVSYQTSTSCPIME*LVVFWI Trigger: AATCCAAAATACCACCAAGCACTCCATTATGGGACA...CGATGTGCTGGTCTGATAGCTTACCAACTGGATGTTTTTAAGGTCTTGTTCATT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029624.15 ENSMUST00000153506.8 |
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| CDS-3UTR GCA 90 bp | AACTGTATGAAAACGTCAAGCGGAAATGAACAAGACCTTAAAAACATCCAGTTGTGTCCCATAATGGAGTaGTTGGTGGTATTTTGGATT | + |
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Preference number: 4 (lower is better) Translates to: NCMKTSSGNEQDLKNIQLCPIME*LVVFWI Trigger: AATCCAAAATACCACCAAGCACTCCATTATGGGACA...CAACTGGATGTTTTTAAGGTCTTGTTCATTTCCGCTTGACGTTTTCATACAGTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000029624.15 ENSMUST00000153506.8 |
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| CDS-3UTR CCA 90 bp | TCAAGCGGAAATGAACAAGACCTTAAAAACATCCAGTTGGTAAGCTATCAGACCTGCTTGGTGGTATTTTaGATTTCCATAGAGTTTCAT | + |
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Preference number: 4 (lower is better) Translates to: SSGNEQDLKNIQLVSYQTCLVVF*ISIEFH Trigger: ATGAAACTCTATGGAAATCCAAAATACCACCAAGCA...GGTCTGATAGCTTACCAACTGGATGTTTTTAAGGTCTTGTTCATTTCCGCTTGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029624.15 ENSMUST00000153506.8 |
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| CDS-3UTR CCA 90 bp | TGTATGAAAACGTCAAGCGGAAATGAACAAGACCTTAAAAACATCCAGTTGGTATGCTTGGTGGTATTTTaGATTTCCATAGAGTTTCAT | + |
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Preference number: 4 (lower is better) Translates to: CMKTSSGNEQDLKNIQLVCLVVF*ISIEFH Trigger: ATGAAACTCTATGGAAATCCAAAATACCACCAAGCA...TACCAACTGGATGTTTTTAAGGTCTTGTTCATTTCCGCTTGACGTTTTCATACA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000029624.15 ENSMUST00000153506.8 |
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| CDS GCA 90 bp | TCCCAGGAGTACACCCACCAAGTAAGCCAGGCCAGCGCCCCGCCCTaGACGGAGAGCAGAGCTAAGCCGGCCCACAGGAGACCACTGGTG | + |
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Preference number: 5 (lower is better) Translates to: SQEYTHQVSQASAPP*TESRAKPAHRRPLV Trigger: CACCAGTGGTCTCCTGTGGGCCGGCTTAGCTCTGCTCTCCGTGCAGGGCGGGGCGCTGGCCTGGCTTACTTGGTGGGTGTACTCCTGGGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029624.15 ENSMUST00000153506.8 |
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| CDS CCA 90 bp | AAGGGCCGCAGCTGTTCCTGCAGGTGGTCGATCTTCGCCATCAGATaGCGCTCTCGTCTCTTCTGGATCTCCTCTAAATGCAGGATAGTG | + |
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Preference number: 5 (lower is better) Translates to: KGRSCSCRWSIFAIR*RSRLFWISSKCRIV Trigger: CACTATCCTGCATTTAGAGGAGATCCAGAAGAGACGAGAGCGCCATCTGATGGCGAAGATCGACCACCTGCAGGAACAGCTGCGGCCCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029624.15 ENSMUST00000146340.2 |
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| CDS GCA 90 bp | GGCCCACAGGAGACCACTGGTGTTGGCTTCCGACCGGGCTTCTATTaGAGCTTTGACCTTTCTTGTGACACCGTATATCATACCGTAGTT | + |
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Preference number: 5 (lower is better) Translates to: GPQETTGVGFRPGFY*SFDLSCDTVYHTVV Trigger: AACTACGGTATGATATACGGTGTCACAAGAAAGGTCAAAGCTGCAATAGAAGCCCGGTCGGAAGCCAACACCAGTGGTCTCCTGTGGGCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153506.8 |
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| CDS-3UTR CAA 90 bp | GAACAAGACCTTAAAAACATCCAGTTGGTAAGCTATCAGACCAGCACATCGCCTGCTTCTATTGCAGCTTaGACCTGCTCCAAGGGCCGC | + |
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Preference number: 5 (lower is better) Translates to: EQDLKNIQLVSYQTSTSPASIAA*TCSKGR Trigger: GCGGCCCTTGGAGCAGGTCAAAGCTGCAATAGAAGC...AGGCGATGTGCTGGTCTGATAGCTTACCAACTGGATGTTTTTAAGGTCTTGTTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029624.15 |
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| CDS GCA 90 bp | CTGTCATTAGCAAAGTGTCCATCAATGTTGAAGCTGGAATTTCACTaGCATCATCCTGTGGCTCCACTGTCCCATAATGGAGTGCTTGGT | + |
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Preference number: 5 (lower is better) Translates to: LSLAKCPSMLKLEFH*HHPVAPLSHNGVLG Trigger: ACCAAGCACTCCATTATGGGACAGTGGAGCCACAGGATGATGGCAGTGAAATTCCAGCTTCAACATTGATGGACACTTTGCTAATGACAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146340.2 |
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| CDS-3UTR CAA 90 bp | CAAGACCTTAAAAACATCCAGTTGGTAAGCTATCAGACCAGCACATCGCCTGCTGCTTCTATTGCAGCTTaGACCTTTCTTGTGACACCG | + |
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Preference number: 5 (lower is better) Translates to: QDLKNIQLVSYQTSTSPAASIAA*TFLVTP Trigger: CGGTGTCACAAGAAAGGTCAAAGCTGCAATAGAAGC...AGCAGGCGATGTGCTGGTCTGATAGCTTACCAACTGGATGTTTTTAAGGTCTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000153506.8 |
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| CDS CCA 90 bp | TACCAAGGGAAGGCCGTGTTTATAAGTAACTGTTATTTCATCCTGTaGCTCCACTGTCCCATAATGGAGTGCTTGGTGGTATTTTGGATT | + |
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Preference number: 5 (lower is better) Translates to: YQGKAVFISNCYFIL*LHCPIMECLVVFWI Trigger: AATCCAAAATACCACCAAGCACTCCATTATGGGACAGTGGAGCCACAGGATGAAATAACAGTTACTTATAAACACGGCCTTCCCTTGGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029624.15 ENSMUST00000153506.8 |
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| CDS-3UTR CAA 90 bp | TCCAGGGATTCTGTAGCCTCAGCAAGGTCTTCCTTTAGCTTGTTGTATTGTTCCGTGCTTGGTGGTATTTaGGATTTCCATAGAGTTTCA | + |
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Preference number: 5 (lower is better) Translates to: SRDSVASARSSFSLLYCSVLGGI*DFHRVS Trigger: TGAAACTCTATGGAAATCCAAAATACCACCAAGCAC...GGAACAATACAACAAGCTAAAGGAAGACCTTGCTGAGGCTACAGAATCCCTGGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153506.8 |
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| CDS-3UTR CAA 90 bp | CCAAACTGTATGAAAACGTCAAGCGGAAATGAACAAGACCTTAAAAACATCCAGAAGTGTCCATCAATGTaGAAGCTGGAATTTCACTGC | + |
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Preference number: 5 (lower is better) Translates to: PNCMKTSSGNEQDLKNIQKCPSM*KLEFHC Trigger: GCAGTGAAATTCCAGCTTCAACATTGATGGACACTT...CTGGATGTTTTTAAGGTCTTGTTCATTTCCGCTTGACGTTTTCATACAGTTTGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029624.15 ENSMUST00000153506.8 |
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| CDS-3UTR CAA 90 bp | TGTATGAAAACGTCAAGCGGAAATGAACAAGACCTTAAAAACATCCAGTTGGTAATGATGGCTGCAGTTTaGATGCCTTTATCCTCATTC | + |
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Preference number: 5 (lower is better) Translates to: CMKTSSGNEQDLKNIQLVMMAAV*MPLSSF Trigger: GAATGAGGATAAAGGCATCAAAACTGCAGCCATCAT...TACCAACTGGATGTTTTTAAGGTCTTGTTCATTTCCGCTTGACGTTTTCATACA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029624.15 ENSMUST00000153506.8 |
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| CDS-3UTR CAA 90 bp | TGTATGAAAACGTCAAGCGGAAATGAACAAGACCTTAAAAACATCCAGTTGGTAGTGCTTGGTGGTATTTaGGATTTCCATAGAGTTTCA | + |
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Preference number: 5 (lower is better) Translates to: CMKTSSGNEQDLKNIQLVVLGGI*DFHRVS Trigger: TGAAACTCTATGGAAATCCAAAATACCACCAAGCAC...TACCAACTGGATGTTTTTAAGGTCTTGTTCATTTCCGCTTGACGTTTTCATACA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029624.15 ENSMUST00000153506.8 |
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| CDS GCA 72 bp | TACACCCACCAAGTAAGCCAGGCCAGCGCCCCGCCCTaGACGGAGAGCAGAGCTAAGCCGGCCCACAGGAGA | + |
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Preference number: 6 (lower is better) Translates to: YTHQVSQASAPP*TESRAKPAHRR Trigger: TCTCCTGTGGGCCGGCTTAGCTCTGCTCTCCGTGCAGGGCGGGGCGCTGGCCTGGCTTACTTGGTGGGTGTA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029624.15 ENSMUST00000153506.8 |
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| CDS CAA 90 bp | TGCACGGAGAGCAGAGCTAAGCCGGCCCACAGGAGACCACTGGTGTaGGCTTCCGACCGGGCTTCTATTGCAGCTTTGACCTGCTCCAAG | + |
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Preference number: 6 (lower is better) Translates to: CTESRAKPAHRRPLV*ASDRASIAALTCSK Trigger: CTTGGAGCAGGTCAAAGCTGCAATAGAAGCCCGGTCGGAAGCCAACACCAGTGGTCTCCTGTGGGCCGGCTTAGCTCTGCTCTCCGTGCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029624.15 |
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| CDS CAA 72 bp | AGCAGAGCTAAGCCGGCCCACAGGAGACCACTGGTGTaGGCTTCCGACCGGGCTTCTATTGCAGCTTTGACC | + |
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Preference number: 6 (lower is better) Translates to: SRAKPAHRRPLV*ASDRASIAALT Trigger: GGTCAAAGCTGCAATAGAAGCCCGGTCGGAAGCCAACACCAGTGGTCTCCTGTGGGCCGGCTTAGCTCTGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029624.15 ENSMUST00000153506.8 |
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| CDS CAA 90 bp | TGCACGGAGAGCAGAGCTAAGCCGGCCCACAGGAGACCACTGGTGTaGGCTTCCGACCGGGCTTCTATTGCAGCTTTGACCTTTCTTGTG | + |
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Preference number: 6 (lower is better) Translates to: CTESRAKPAHRRPLV*ASDRASIAALTFLV Trigger: CACAAGAAAGGTCAAAGCTGCAATAGAAGCCCGGTCGGAAGCCAACACCAGTGGTCTCCTGTGGGCCGGCTTAGCTCTGCTCTCCGTGCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153506.8 |
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| CDS GCA 72 bp | GCTGCGATTTCTTGTGGAAGAACTGAAGAAACTGCCTaGTCCGGAGGGATGAGTATGTGTAGTTCTGCCGGG | + |
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Preference number: 6 (lower is better) Translates to: AAISCGRTEETA*SGGMSMCSSAG Trigger: CCCGGCAGAACTACACATACTCATCCCTCCGGAGCAGGCAGTTTCTTCAGTTCTTCCACAAGAAATCGCAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029624.15 ENSMUST00000153506.8 |
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| CDS TCA 72 bp | TCAAAACACCGCCGCTGCGATTTCTTGTGGAAGAACTaGAGAAACTGCCTGCTCCGGAGGGATGAGTATGTG | + |
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Preference number: 6 (lower is better) Translates to: SKHRRCDFLWKN*RNCLLRRDEYV Trigger: CACATACTCATCCCTCCGGAGCAGGCAGTTTCTTCAGTTCTTCCACAAGAAATCGCAGCGGCGGTGTTTTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029624.15 ENSMUST00000153506.8 |
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| CDS CCA 72 bp | GACGATGGAATTCGCAAACGACAGGAAGAAGGTAACTaGCTCCATGATATCCCAGGAGTACACCCACCAAGT | + |
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Preference number: 6 (lower is better) Translates to: DDGIRKRQEEGN*LHDIPGVHPPS Trigger: ACTTGGTGGGTGTACTCCTGGGATATCATGGAGCCAGTTACCTTCTTCCTGTCGTTTGCGAATTCCATCGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029624.15 ENSMUST00000153506.8 |
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| CDS TCA 72 bp | GTGGAAGAACTGAAGAAACTGCCTGCTCCGGAGGGATaGGTATGTGTAGTTCTGCCGGGTTATGATGAAGTA | + |
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Preference number: 6 (lower is better) Translates to: VEELKKLPAPEG*VCVVLPGYDEV Trigger: TACTTCATCATAACCCGGCAGAACTACACATACTCATCCCTCCGGAGCAGGCAGTTTCTTCAGTTCTTCCAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029624.15 ENSMUST00000153506.8 |
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| CDS CAA 72 bp | AGGGATTCTGTAGCCTCAGCAAGGTCTTCCTTTAGCTaGTTGTATTGTTCCACATCAAAACACCGCCGCTGC | + |
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Preference number: 6 (lower is better) Translates to: RDSVASARSSFS*LYCSTSKHRRC Trigger: GCAGCGGCGGTGTTTTGATGTGGAACAATACAACAAGCTAAAGGAAGACCTTGCTGAGGCTACAGAATCCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029624.15 |
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| CDS CAA 90 bp | GAAGCTGGAATTTCACTGCCATCTGCCGTGATGATGGCTGCAGTTTaGATGCCTTTATCCTCATTCTGTAAGTCCTGCAGGAATGAGCCT | + |
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Preference number: 6 (lower is better) Translates to: EAGISLPSAVMMAAV*MPLSSFCKSCRNEP Trigger: AGGCTCATTCCTGCAGGACTTACAGAATGAGGATAAAGGCATCAAAACTGCAGCCATCATCACGGCAGATGGCAGTGAAATTCCAGCTTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029624.15 ENSMUST00000153506.8 |
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| CDS CAA 90 bp | CTTTCCAGGGATTCTGTAGCCTCAGCAAGGTCTTCCTTTAGCTTGTaGTATTGTTCCACATCAAAACACCGCCGCTGCGATTTCTTGTGG | + |
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Preference number: 6 (lower is better) Translates to: LSRDSVASARSSFSL*YCSTSKHRRCDFLW Trigger: CCACAAGAAATCGCAGCGGCGGTGTTTTGATGTGGAACAATACAACAAGCTAAAGGAAGACCTTGCTGAGGCTACAGAATCCCTGGAAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029624.15 |
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| CDS CAA 90 bp | ACGCTTTCCAGGGATTCTGTAGCCTCAGCAAGGTCTTCCTTTAGCTaGTTGTATTGTTCCACATCAAAACACCGCCGCTGCGATTTCTTG | + |
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Preference number: 6 (lower is better) Translates to: TLSRDSVASARSSFS*LYCSTSKHRRCDFL Trigger: CAAGAAATCGCAGCGGCGGTGTTTTGATGTGGAACAATACAACAAGCTAAAGGAAGACCTTGCTGAGGCTACAGAATCCCTGGAAAGCGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029624.15 |
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| CDS GCA 72 bp | GCAAAGTGTCCATCAATGTTGAAGCTGGAATTTCACTaGCATCATCCTGTGGCTCCACTGTCCCATAATGGA | + |
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Preference number: 6 (lower is better) Translates to: AKCPSMLKLEFH*HHPVAPLSHNG Trigger: TCCATTATGGGACAGTGGAGCCACAGGATGATGGCAGTGAAATTCCAGCTTCAACATTGATGGACACTTTGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146340.2 |
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| CDS CAA 72 bp | GATTCTGTAGCCTCAGCAAGGTCTTCCTTTAGCTTGTaGTATTGTTCCACATCAAAACACCGCCGCTGCGAT | + |
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Preference number: 6 (lower is better) Translates to: DSVASARSSFSL*YCSTSKHRRCD Trigger: ATCGCAGCGGCGGTGTTTTGATGTGGAACAATACAACAAGCTAAAGGAAGACCTTGCTGAGGCTACAGAATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029624.15 |
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| CDS CAA 90 bp | CATCCTGTGGCTCCACTGTCCCATAATGGAGTGCTTGGTGGTATTTaGGATTTCCATAGAGTTTCATACATAAAACCTGGGGTGTGGATG | + |
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Preference number: 6 (lower is better) Translates to: HPVAPLSHNGVLGGI*DFHRVSYIKPGVWM Trigger: CATCCACACCCCAGGTTTTATGTATGAAACTCTATGGAAATCCAAAATACCACCAAGCACTCCATTATGGGACAGTGGAGCCACAGGATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000029624.15 ENSMUST00000146340.2 ENSMUST00000153506.8 |
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| CDS GCA 72 bp | GCCATCATCCTGTGGCTCCACTGTCCCATAATGGAGTaGTTGGTGGTATTTTGGATTTCCATAGAGTTTCAT | + |
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Preference number: 6 (lower is better) Translates to: AIILWLHCPIME*LVVFWISIEFH Trigger: ATGAAACTCTATGGAAATCCAAAATACCACCAAGCACTCCATTATGGGACAGTGGAGCCACAGGATGATGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146340.2 |
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| CDS CCA 72 bp | CTTGGTGTTTTCCAACTCAGTCATATGCTCTCCACTTaGCTCTTCTTTCTTGTGACACCGTATATCATACCG | + |
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Preference number: 6 (lower is better) Translates to: LGVFQLSHMLST*LFFLVTPYIIP Trigger: CGGTATGATATACGGTGTCACAAGAAAGAAGAGCCAAGTGGAGAGCATATGACTGAGTTGGAAAACACCAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029624.15 ENSMUST00000146340.2 |
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| CDS CAA 72 bp | GCTCCACTGTCCCATAATGGAGTGCTTGGTGGTATTTaGGATTTCCATAGAGTTTCATACATAAAACCTGGG | + |
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Preference number: 6 (lower is better) Translates to: APLSHNGVLGGI*DFHRVSYIKPG Trigger: CCCAGGTTTTATGTATGAAACTCTATGGAAATCCAAAATACCACCAAGCACTCCATTATGGGACAGTGGAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029624.15 ENSMUST00000146340.2 ENSMUST00000153506.8 |
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| CDS GCA 72 bp | TATTTCATCCTGTGGCTCCACTGTCCCATAATGGAGTaGTTGGTGGTATTTTGGATTTCCATAGAGTTTCAT | + |
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Preference number: 6 (lower is better) Translates to: YFILWLHCPIME*LVVFWISIEFH Trigger: ATGAAACTCTATGGAAATCCAAAATACCACCAAGCACTCCATTATGGGACAGTGGAGCCACAGGATGAAATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029624.15 ENSMUST00000153506.8 |
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