Pregenerated sensors for MCU (Mus musculus)
Ensembl gene IDs: ENSMUSG00000009647Ensembl transcript IDs: ENSMUST00000009791.7, ENSMUST00000020312.13, ENSMUST00000161435.2
Found 159 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGACCGAGACATGCATCCTTTCTCTGGCAGGCCAGTGGCGGCTGGTaGTGGAAGCAGTGGCGTGGCTGGCCTTCAACCTCTGCAAGGCAC | + |
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Preference number: 1 (lower is better) Translates to: GPRHASFLWQASGGW*WKQWRGWPSTSARH Trigger: GTGCCTTGCAGAGGTTGAAGGCCAGCCACGCCACTGCTTCCACCACCAGCCGCCACTGGCCTGCCAGAGAAAGGATGCATGTCTCGGTCC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
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| 3UTR CCA 90 bp | TGGGGACCGAGACATGCATCCTTTCTCTGGCAGGCCAGTGGCGGCTaGTGGTGGAAGCAGTGGCGTGGCTGGCCTTCAACCTCTGCAAGG | + |
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Preference number: 1 (lower is better) Translates to: WGPRHASFLWQASGG*WWKQWRGWPSTSAR Trigger: CCTTGCAGAGGTTGAAGGCCAGCCACGCCACTGCTTCCACCACCAGCCGCCACTGGCCTGCCAGAGAAAGGATGCATGTCTCGGTCCCCA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
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| 3UTR GCA 90 bp | TTGAAGGACAGGAAGGAAGGAGGAGGCGGGCTGGGGACCGAGACATaGATCCTTTCTCTGGCAGGCCAGTGGCGGCTGGTGGTGGAAGCA | + |
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Preference number: 1 (lower is better) Translates to: LKDRKEGGGGLGTET*ILSLAGQWRLVVEA Trigger: TGCTTCCACCACCAGCCGCCACTGGCCTGCCAGAGAAAGGATGCATGTCTCGGTCCCCAGCCCGCCTCCTCCTTCCTTCCTGTCCTTCAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
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| 3UTR CCA 90 bp | CCGAGACATGCATCCTTTCTCTGGCAGGCCAGTGGCGGCTGGTGGTaGAAGCAGTGGCGTGGCTGGCCTTCAACCTCTGCAAGGCACCTA | + |
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Preference number: 1 (lower is better) Translates to: PRHASFLWQASGGWW*KQWRGWPSTSARHL Trigger: TAGGTGCCTTGCAGAGGTTGAAGGCCAGCCACGCCACTGCTTCCACCACCAGCCGCCACTGGCCTGCCAGAGAAAGGATGCATGTCTCGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
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| 3UTR CCA 90 bp | CTCTGGCAGGCCAGTGGCGGCTGGTGGTGGAAGCAGTGGCGTGGCTaGCCTTCAACCTCTGCAAGGCACCTAGAGTCTGGGTTTGTCATT | + |
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Preference number: 1 (lower is better) Translates to: LWQASGGWWWKQWRG*PSTSARHLESGFVI Trigger: AATGACAAACCCAGACTCTAGGTGCCTTGCAGAGGTTGAAGGCCAGCCACGCCACTGCTTCCACCACCAGCCGCCACTGGCCTGCCAGAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
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| 3UTR CCA 90 bp | CTTTCTCTGGCAGGCCAGTGGCGGCTGGTGGTGGAAGCAGTGGCGTaGCTGGCCTTCAACCTCTGCAAGGCACCTAGAGTCTGGGTTTGT | + |
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Preference number: 1 (lower is better) Translates to: LSLAGQWRLVVEAVA*LAFNLCKAPRVWVC Trigger: ACAAACCCAGACTCTAGGTGCCTTGCAGAGGTTGAAGGCCAGCCACGCCACTGCTTCCACCACCAGCCGCCACTGGCCTGCCAGAGAAAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
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| 3UTR GCA 90 bp | CCAACCAACCAGGATCTGCAGGTAGGTAGGTGGTCAGAAAAGGGGTaGAGGGCCGAGAGATTCTGGTACCTTTGCAGAGACCGGGTCCAG | + |
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Preference number: 1 (lower is better) Translates to: PTNQDLQVGRWSEKG*RAERFWYLCRDRVQ Trigger: CTGGACCCGGTCTCTGCAAAGGTACCAGAATCTCTCGGCCCTGCACCCCTTTTCTGACCACCTACCTACCTGCAGATCCTGGTTGGTTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
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| 3UTR TCA 90 bp | GCCATGGATGAAAAGATGGCTGGTGGGCGTCTGGTGGGCCATGGGTaGAAAAGAGAAGTAGGCAGTCTCCCAGATCTCTGTCCACCCTGG | + |
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Preference number: 1 (lower is better) Translates to: AMDEKMAGGRLVGHG*KREVGSLPDLCPPW Trigger: CCAGGGTGGACAGAGATCTGGGAGACTGCCTACTTCTCTTTTTCACCCATGGCCCACCAGACGCCCACCAGCCATCTTTTCATCCATGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
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| 3UTR TCA 90 bp | CATGTGCAAACAAAGATGGCTGGTGGGCGTCTGGTGGGCCATGGATaGAAAGATGGCTGGTGGGCGTCTGGTGGGCCATGGGTGAAAAAG | + |
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Preference number: 1 (lower is better) Translates to: HVQTKMAGGRLVGHG*KDGWWASGGPWVKK Trigger: CTTTTTCACCCATGGCCCACCAGACGCCCACCAGCCATCTTTTCATCCATGGCCCACCAGACGCCCACCAGCCATCTTTGTTTGCACATG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
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| 3UTR TCA 90 bp | CCCTCTACCCCAGCCTCCACCTGCCATGCTTTAATTAAAACGGCGTaGGTTACAAACAGGCGCACTCTCTGCCGGGATTCACGGTCATCT | + |
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Preference number: 1 (lower is better) Translates to: PSTPASTCHALIKTA*VTNRRTLCRDSRSS Trigger: AGATGACCGTGAATCCCGGCAGAGAGTGCGCCTGTTTGTAACTCACGCCGTTTTAATTAAAGCATGGCAGGTGGAGGCTGGGGTAGAGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000009791.7 ENSMUST00000020312.13 |
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| 3UTR GCA 90 bp | TGGCGGCTGGTGGTGGAAGCAGTGGCGTGGCTGGCCTTCAACCTCTaGAAGGCACCTAGAGTCTGGGTTTGTCATTCAAAGGTTTTCTTT | + |
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Preference number: 1 (lower is better) Translates to: WRLVVEAVAWLAFNL*KAPRVWVCHSKVFF Trigger: AAAGAAAACCTTTGAATGACAAACCCAGACTCTAGGTGCCTTGCAGAGGTTGAAGGCCAGCCACGCCACTGCTTCCACCACCAGCCGCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
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| 3UTR CCA 90 bp | GAAGATCTACATTACATGTGCAAACAAAGATGGCTGGTGGGCGTCTaGTGGGCCATGGATGAAAAGATGGCTGGTGGGCGTCTGGTGGGC | + |
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Preference number: 1 (lower is better) Translates to: EDLHYMCKQRWLVGV*WAMDEKMAGGRLVG Trigger: GCCCACCAGACGCCCACCAGCCATCTTTTCATCCATGGCCCACCAGACGCCCACCAGCCATCTTTGTTTGCACATGTAATGTAGATCTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
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| 3UTR GCA 90 bp | TCCGCCCAGCTGCGACGGAGTCTTCACTCTCATCCGAAATGGAGATaGTTAAGACAAGACTCGCTAAGCCCTTTGCACTTGGATTCCATG | + |
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Preference number: 1 (lower is better) Translates to: SAQLRRSLHSHPKWR*LRQDSLSPLHLDSM Trigger: CATGGAATCCAAGTGCAAAGGGCTTAGCGAGTCTTGTCTTAAGCATCTCCATTTCGGATGAGAGTGAAGACTCCGTCGCAGCTGGGCGGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
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| 3UTR GCA 90 bp | CTTCCCGGGTCCTTCCCAGTAGCCTGCGAATGTTCAAGTTTCCCCTaGATGAACAGGTCCCATCACCAATACCTAAAGACAGAGCAGGAA | + |
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Preference number: 1 (lower is better) Translates to: LPGSFPVACECSSFP*MNRSHHQYLKTEQE Trigger: TTCCTGCTCTGTCTTTAGGTATTGGTGATGGGACCTGTTCATGCAGGGGAAACTTGAACATTCGCAGGCTACTGGGAAGGACCCGGGAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
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| 3UTR CCA 90 bp | ACATCCTCCGCCCAGCTGCGACGGAGTCTTCACTCTCATCCGAAATaGAGATGCTTAAGACAAGACTCGCTAAGCCCTTTGCACTTGGAT | + |
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Preference number: 1 (lower is better) Translates to: TSSAQLRRSLHSHPK*RCLRQDSLSPLHLD Trigger: ATCCAAGTGCAAAGGGCTTAGCGAGTCTTGTCTTAAGCATCTCCATTTCGGATGAGAGTGAAGACTCCGTCGCAGCTGGGCGGAGGATGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
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| 3UTR GCA 90 bp | CCCCCGCCTCCCACACTCAGAGGATTTGCTCATTGCACTGTGCCATaGCTTCTTAAGAACCCTGCACACAAACAGGATAGATGGCTTAAA | + |
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Preference number: 1 (lower is better) Translates to: PPPPTLRGFAHCTVP*LLKNPAHKQDRWLK Trigger: TTTAAGCCATCTATCCTGTTTGTGTGCAGGGTTCTTAAGAAGGCATGGCACAGTGCAATGAGCAAATCCTCTGAGTGTGGGAGGCGGGGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
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| 3UTR CCA 90 bp | GCGGAGCTAAAGCCAGAAGATCTACATTACATGTGCAAACAAAGATaGCTGGTGGGCGTCTGGTGGGCCATGGATGAAAAGATGGCTGGT | + |
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Preference number: 1 (lower is better) Translates to: AELKPEDLHYMCKQR*LVGVWWAMDEKMAG Trigger: ACCAGCCATCTTTTCATCCATGGCCCACCAGACGCCCACCAGCCATCTTTGTTTGCACATGTAATGTAGATCTTCTGGCTTTAGCTCCGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
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| 3UTR GCA 90 bp | GGCACTTTCAAAGCGGAGCTAAAGCCAGAAGATCTACATTACATGTaGAAACAAAGATGGCTGGTGGGCGTCTGGTGGGCCATGGATGAA | + |
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Preference number: 1 (lower is better) Translates to: GTFKAELKPEDLHYM*KQRWLVGVWWAMDE Trigger: TTCATCCATGGCCCACCAGACGCCCACCAGCCATCTTTGTTTGCACATGTAATGTAGATCTTCTGGCTTTAGCTCCGCTTTGAAAGTGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
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| 3UTR CCA 90 bp | TTCGTGGTACATGTTAAGTGGTCTATGATGTGCATGTGCATGGAATaGATTCCCATGAGGTCCGTGGCACTGGGGCACTTTCAAAGCGGA | + |
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Preference number: 1 (lower is better) Translates to: FVVHVKWSMMCMCME*IPMRSVALGHFQSG Trigger: TCCGCTTTGAAAGTGCCCCAGTGCCACGGACCTCATGGGAATCCATTCCATGCACATGCACATCATAGACCACTTAACATGTACCACGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
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| 3UTR CCA 90 bp | CCCCGCCCCCACTTGCTAATATTAGATCAAGCATGTATCACTTTCTaGGGAGAATCAATGAGTCTAAAGAGCATCTACTGGGTGGGCGCC | + |
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Preference number: 1 (lower is better) Translates to: PRPHLLILDQACITF*GESMSLKSIYWVGA Trigger: GGCGCCCACCCAGTAGATGCTCTTTAGACTCATTGATTCTCCCCAGAAAGTGATACATGCTTGATCTAATATTAGCAAGTGGGGGCGGGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
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| 3UTR CCA 90 bp | TCCTGCAATCAAGGCTCTGTGCACAGCAGCATACAGCATGCCTCGTaGCTTTTCTTATGCTGCTGCAGTATATTCCCTAGATACGGATCT | + |
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Preference number: 1 (lower is better) Translates to: SCNQGSVHSSIQHAS*LFLCCCSIFPRYGS Trigger: AGATCCGTATCTAGGGAATATACTGCAGCAGCATAAGAAAAGCCACGAGGCATGCTGTATGCTGCTGTGCACAGAGCCTTGATTGCAGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
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| 3UTR CCA 90 bp | TGTATCACTTTCTGGGGAGAATCAATGAGTCTAAAGAGCATCTACTaGGTGGGCGCCAACAGAGCAAGGCTTTCAAGACTTGGAAGAGCC | + |
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Preference number: 1 (lower is better) Translates to: CITFWGESMSLKSIY*VGANRARLSRLGRA Trigger: GGCTCTTCCAAGTCTTGAAAGCCTTGCTCTGTTGGCGCCCACCCAGTAGATGCTCTTTAGACTCATTGATTCTCCCCAGAAAGTGATACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
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| 3UTR CCA 90 bp | CACGGGCCTTCTGATCCGTGGTGTGCAGGAAGTGGGGGTTATCAATaGGATCAGTATATAAAGGAAGGAATTTTTCCTCCTCTCAAGACT | + |
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Preference number: 1 (lower is better) Translates to: HGPSDPWCAGSGGYQ*DQYIKEGIFPPLKT Trigger: AGTCTTGAGAGGAGGAAAAATTCCTTCCTTTATATACTGATCCCATTGATAACCCCCACTTCCTGCACACCACGGATCAGAAGGCCCGTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
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| 3UTR TCA 90 bp | CAACAGAGCAAGGCTTTCAAGACTTGGAAGAGCCTCCAAAATAGCTaGCCTGTCTTGTCGTTGTTATACCACAGTAAGTCTTTTTGTTCC | + |
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Preference number: 1 (lower is better) Translates to: QQSKAFKTWKSLQNS*PVLSLLYHSKSFCS Trigger: GGAACAAAAAGACTTACTGTGGTATAACAACGACAAGACAGGTCAGCTATTTTGGAGGCTCTTCCAAGTCTTGAAAGCCTTGCTCTGTTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
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| 3UTR CCA 90 bp | CGAACACAAGAGTTCAGAATTAAGAACTTCGTGGTACATGTTAAGTaGTCTATGATGTGCATGTGCATGGAATGGATTCCCATGAGGTCC | + |
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Preference number: 1 (lower is better) Translates to: RTQEFRIKNFVVHVK*SMMCMCMEWIPMRS Trigger: GGACCTCATGGGAATCCATTCCATGCACATGCACATCATAGACCACTTAACATGTACCACGAAGTTCTTAATTCTGAACTCTTGTGTTCG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
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| 3UTR CCA 90 bp | AGTCACCTTGAATCTCAGTTGGTCTTTACACGCGTGATTAGGCTTTaGGAGGACTATGTCATACACAAATTCCTAAGTTGTTTCTTCCTC | + |
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Preference number: 1 (lower is better) Translates to: SHLESQLVFTRVIRL*EDYVIHKFLSCFFL Trigger: GAGGAAGAAACAACTTAGGAATTTGTGTATGACATAGTCCTCCCAAAGCCTAATCACGCGTGTAAAGACCAACTGAGATTCAAGGTGACT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
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| 3UTR TCA 90 bp | AACAATCATAACTTAATTCCAATGATTATGTGGTTAAAAGCAGTGTaGCCAACCAACCAGGATCTGCAGGTAGGTAGGTGGTCAGAAAAG | + |
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Preference number: 1 (lower is better) Translates to: NNHNLIPMIMWLKAV*PTNQDLQVGRWSEK Trigger: CTTTTCTGACCACCTACCTACCTGCAGATCCTGGTTGGTTGGTCACACTGCTTTTAACCACATAATCATTGGAATTAAGTTATGATTGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
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| 3UTR-3UTR TCA 90 bp | GTAGGGCAACAACCTCTTGGTTCCCACGAGGAGGCTCATCTCCACCCCGCCCCCCAAGTTTCCCCTGCATaGACAGGTCCCATCACCAAT | + |
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Preference number: 2 (lower is better) Translates to: VGQQPLGSHEEAHLHPAPQVSPA*TGPITN Trigger: ATTGGTGATGGGACCTGTTCATGCAGGGGAAACTTG...GGGGGCGGGGTGGAGATGAGCCTCCTCGTGGGAACCAAGAGGTTGTTGCCCTAC 59% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
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| 3UTR-3UTR TCA 90 bp | CATGGAATGGATTCCCATGAGGTCCGTGGCACTGGGGCACTTTCAAAGCGGAGCCTGGTGGGCCATGGATaGAAAGATGGCTGGTGGGCG | + |
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Preference number: 2 (lower is better) Translates to: HGMDSHEVRGTGALSKRSLVGHG*KDGWWA Trigger: CGCCCACCAGCCATCTTTTCATCCATGGCCCACCAG...GCTCCGCTTTGAAAGTGCCCCAGTGCCACGGACCTCATGGGAATCCATTCCATG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
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| 3UTR-3UTR GCA 90 bp | GGGACCGAGACATGCATCCTTTCTCTGGCAGGCCAGTGGCGGCTGGTGGTGGAAGTGTTCCGCAGACCCTaGAAAGATGCAAGAAGCAAA | + |
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Preference number: 2 (lower is better) Translates to: GTETCILSLAGQWRLVVEVFRRP*KDARSK Trigger: TTTGCTTCTTGCATCTTTGCAGGGTCTGCGGAACAC...TTCCACCACCAGCCGCCACTGGCCTGCCAGAGAAAGGATGCATGTCTCGGTCCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
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| 3UTR-3UTR CCA 90 bp | GCAAACAAAGATGGCTGGTGGGCGTCTGGTGGGCCATGGATGAAAAGATGGCTGCAGCTAAGATGTCACTaGCACGGAAGGTGGAGAGTG | + |
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Preference number: 2 (lower is better) Translates to: ANKDGWWASGGPWMKRWLQLRCH*HGRWRV Trigger: CACTCTCCACCTTCCGTGCCAGTGACATCTTAGCTG...CAGCCATCTTTTCATCCATGGCCCACCAGACGCCCACCAGCCATCTTTGTTTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
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| 3UTR-3UTR CCA 90 bp | CTGCACCACTGTACAGACCAACCCATATGCATATACATATACATGGCCACATGTAGGTGGAGAGTGAGGTaGGGATCCTGCCAGCCACTG | + |
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Preference number: 2 (lower is better) Translates to: LHHCTDQPICIYIYMATCRWRVR*GSCQPL Trigger: CAGTGGCTGGCAGGATCCCCACCTCACTCTCCACCT...ACATGTGGCCATGTATATGTATATGCATATGGGTTGGTCTGTACAGTGGTGCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
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| 3UTR-3UTR CCA 90 bp | AGGAGGCTCATCTCCACCCCGCCCCCACTTGCTAATATTAGATCAAGCATGTATGCGTCTGGTGGGCCATaGGTGAAAAAGAGAAGTAGG | + |
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Preference number: 2 (lower is better) Translates to: RRLISTPPPLANIRSSMYASGGP*VKKRSR Trigger: CCTACTTCTCTTTTTCACCCATGGCCCACCAGACGC...ATACATGCTTGATCTAATATTAGCAAGTGGGGGCGGGGTGGAGATGAGCCTCCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
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| 3UTR-3UTR CCA 90 bp | GTAGGTAGGTGGTCAGAAAAGGGGTGCAGGGCCGAGAGATTCTGGTACCTTTGCCACTCTCATCCGAAATaGAGATGCTTAAGACAAGAC | + |
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Preference number: 2 (lower is better) Translates to: VGRWSEKGCRAERFWYLCHSHPK*RCLRQD Trigger: GTCTTGTCTTAAGCATCTCCATTTCGGATGAGAGTG...GCAAAGGTACCAGAATCTCTCGGCCCTGCACCCCTTTTCTGACCACCTACCTAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
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| 3UTR-3UTR CCA 90 bp | TGGCCTTCAACCTCTGCAAGGCACCTAGAGTCTGGGTTTGTCATTCAAAGGTTTAGCGCAGGGACCATCTaGGAAGATGGTAGAAAACAC | + |
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Preference number: 2 (lower is better) Translates to: WPSTSARHLESGFVIQRFSAGTI*EDGRKH Trigger: GTGTTTTCTACCATCTTCCCAGATGGTCCCTGCGCT...AAACCTTTGAATGACAAACCCAGACTCTAGGTGCCTTGCAGAGGTTGAAGGCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
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| 3UTR-3UTR TCA 90 bp | CTGCACCACTGTACAGACCAACCCATATGCATATACATATACATGGCCACATGTCTGGTGGGCCATGGGTaGAAAAGAGAAGTAGGCAGT | + |
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Preference number: 2 (lower is better) Translates to: LHHCTDQPICIYIYMATCLVGHG*KREVGS Trigger: ACTGCCTACTTCTCTTTTTCACCCATGGCCCACCAG...ACATGTGGCCATGTATATGTATATGCATATGGGTTGGTCTGTACAGTGGTGCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
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| 3UTR-3UTR CCA 90 bp | TGGCCTTCAACCTCTGCAAGGCACCTAGAGTCTGGGTTTGTCATTCAAAGGTTTCCTCTTTTGGTAATATaGATGAGCACGGGCCTTCTG | + |
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Preference number: 2 (lower is better) Translates to: WPSTSARHLESGFVIQRFPLLVI*MSTGLL Trigger: CAGAAGGCCCGTGCTCATCCATATTACCAAAAGAGG...AAACCTTTGAATGACAAACCCAGACTCTAGGTGCCTTGCAGAGGTTGAAGGCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
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| 3UTR-3UTR GCA 90 bp | CTGCACCACTGTACAGACCAACCCATATGCATATACATATACATGGCCACATGTTCCTTCCCAGTAGCCTaGGAATGTTCAAGTTTCCCC | + |
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Preference number: 2 (lower is better) Translates to: LHHCTDQPICIYIYMATCSFPVA*ECSSFP Trigger: GGGGAAACTTGAACATTCGCAGGCTACTGGGAAGGA...ACATGTGGCCATGTATATGTATATGCATATGGGTTGGTCTGTACAGTGGTGCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
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| 3UTR-3UTR GCA 90 bp | AGGAGGCTCATCTCCACCCCGCCCCCACTTGCTAATATTAGATCAAGCATGTATTCGTGGCTTTTCTTATaGTGCTGCAGTATATTCCCT | + |
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Preference number: 2 (lower is better) Translates to: RRLISTPPPLANIRSSMYSWLFL*CCSIFP Trigger: AGGGAATATACTGCAGCAGCATAAGAAAAGCCACGA...ATACATGCTTGATCTAATATTAGCAAGTGGGGGCGGGGTGGAGATGAGCCTCCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
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| 3UTR-3UTR CCA 90 bp | TGGATACAGGTCAGGAGTTATCTTTTCCTCCTACCTATGTTGATGAATTTTGCATGGCTGGTGGGCGTCTaGTGGGCCATGGGTGAAAAA | + |
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Preference number: 2 (lower is better) Translates to: WIQVRSYLFLLPMLMNFAWLVGV*WAMGEK Trigger: TTTTTCACCCATGGCCCACCAGACGCCCACCAGCCA...TGCAAAATTCATCAACATAGGTAGGAGGAAAAGATAACTCCTGACCTGTATCCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
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| 3UTR-3UTR CCA 90 bp | GAGTTCAGAATTAAGAACTTCGTGGTACATGTTAAGTGGTCTATGATGTGCATGTGGCTGGTGGGCGTCTaGTGGGCCATGGATGAAAAG | + |
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Preference number: 2 (lower is better) Translates to: EFRIKNFVVHVKWSMMCMWLVGV*WAMDEK Trigger: CTTTTCATCCATGGCCCACCAGACGCCCACCAGCCA...CATGCACATCATAGACCACTTAACATGTACCACGAAGTTCTTAATTCTGAACTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
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| 3UTR-3UTR CCA 90 bp | CTGCACCACTGTACAGACCAACCCATATGCATATACATATACATGGCCACATGTTGCATGTGCATGGAATaGATTCCCATGAGGTCCGTG | + |
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Preference number: 2 (lower is better) Translates to: LHHCTDQPICIYIYMATCCMCME*IPMRSV Trigger: CACGGACCTCATGGGAATCCATTCCATGCACATGCA...ACATGTGGCCATGTATATGTATATGCATATGGGTTGGTCTGTACAGTGGTGCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
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| 3UTR-3UTR CCA 90 bp | AGGAGGCTCATCTCCACCCCGCCCCCACTTGCTAATATTAGATCAAGCATGTATGTGGTACATGTTAAGTaGTCTATGATGTGCATGTGC | + |
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Preference number: 2 (lower is better) Translates to: RRLISTPPPLANIRSSMYVVHVK*SMMCMC Trigger: GCACATGCACATCATAGACCACTTAACATGTACCAC...ATACATGCTTGATCTAATATTAGCAAGTGGGGGCGGGGTGGAGATGAGCCTCCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
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| 3UTR-3UTR CCA 90 bp | CACCTAGAGTCTGGGTTTGTCATTCAAAGGTTTTCTTTCATATACAATGATCCCCTGCAGGTAGGTAGGTaGTCAGAAAAGGGGTGCAGG | + |
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Preference number: 2 (lower is better) Translates to: HLESGFVIQRFSFIYNDPLQVGR*SEKGCR Trigger: CCTGCACCCCTTTTCTGACCACCTACCTACCTGCAG...GGGATCATTGTATATGAAAGAAAACCTTTGAATGACAAACCCAGACTCTAGGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
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| 3UTR-3UTR CCA 90 bp | ATAGACATACGAACACAAGAGTTCAGAATTAAGAACTTCGTGGTACATGTTAAGCACTGGCACGGAAGGTaGAGAGTGAGGTGGGGATCC | + |
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Preference number: 2 (lower is better) Translates to: IDIRTQEFRIKNFVVHVKHWHGR*RVRWGS Trigger: GGATCCCCACCTCACTCTCCACCTTCCGTGCCAGTG...CTTAACATGTACCACGAAGTTCTTAATTCTGAACTCTTGTGTTCGTATGTCTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
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| 3UTR CAA 90 bp | CCGAAATGGAGATGCTTAAGACAAGACTCGCTAAGCCCTTTGCACTaGGATTCCATGATGCTGGATCCTCAGCATTTAAGATCCCTTTAT | + |
|
Preference number: 2 (lower is better) Translates to: PKWRCLRQDSLSPLH*DSMMLDPQHLRSLY Trigger: ATAAAGGGATCTTAAATGCTGAGGATCCAGCATCATGGAATCCAAGTGCAAAGGGCTTAGCGAGTCTTGTCTTAAGCATCTCCATTTCGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
||
| 3UTR-3UTR TCA 90 bp | GCTTTTATTCACAGAAGAGCTCCTGCAATCAAGGCTCTGTGCACAGCAGCATACATGTTAAGTGGTCTATaGTGTGCATGTGCATGGAAT | + |
|
Preference number: 2 (lower is better) Translates to: AFIHRRAPAIKALCTAAYMLSGL*CACAWN Trigger: ATTCCATGCACATGCACATCATAGACCACTTAACAT...GTATGCTGCTGTGCACAGAGCCTTGATTGCAGGAGCTCTTCTGTGAATAAAAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
||
| 3UTR-3UTR GCA 90 bp | GCTCTCATAGCTCTCATAGCTTTACTTAAGAGTGAAGAGGAGACTTTCCAATCATGTTCAAGTTTCCCCTaGATGAACAGGTCCCATCAC | + |
|
Preference number: 2 (lower is better) Translates to: ALIALIALLKSEEETFQSCSSFP*MNRSHH Trigger: GTGATGGGACCTGTTCATGCAGGGGAAACTTGAACA...TGATTGGAAAGTCTCCTCTTCACTCTTAAGTAAAGCTATGAGAGCTATGAGAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
||
| 3UTR-3UTR CCA 90 bp | ATAGACATACGAACACAAGAGTTCAGAATTAAGAACTTCGTGGTACATGTTAAGGCGTCTGGTGGGCCATaGATGAAAAGATGGCTGGTG | + |
|
Preference number: 2 (lower is better) Translates to: IDIRTQEFRIKNFVVHVKASGGP*MKRWLV Trigger: CACCAGCCATCTTTTCATCCATGGCCCACCAGACGC...CTTAACATGTACCACGAAGTTCTTAATTCTGAACTCTTGTGTTCGTATGTCTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
||
| 3UTR-3UTR GCA 90 bp | ATGATGCTGGATCCTCAGCATTTAAGATCCCTTTATTCCCTAAGATCCTTTTTGACCCCAGCCTCCACCTaGCATGCTTTAATTAAAACG | + |
|
Preference number: 2 (lower is better) Translates to: MMLDPQHLRSLYSLRSFLTPAST*HALIKT Trigger: CGTTTTAATTAAAGCATGGCAGGTGGAGGCTGGGGT...CAAAAAGGATCTTAGGGAATAAAGGGATCTTAAATGCTGAGGATCCAGCATCAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000009791.7 ENSMUST00000020312.13 |
||
| 3UTR-3UTR GCA 90 bp | GCAAGGCACCTAGAGTCTGGGTTTGTCATTCAAAGGTTTTCTTTCATATACAATACCCCAGCCTCCACCTaGCATGCTTTAATTAAAACG | + |
|
Preference number: 2 (lower is better) Translates to: ARHLESGFVIQRFSFIYNTPAST*HALIKT Trigger: CGTTTTAATTAAAGCATGGCAGGTGGAGGCTGGGGT...ATTGTATATGAAAGAAAACCTTTGAATGACAAACCCAGACTCTAGGTGCCTTGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
||
| 3UTR-3UTR GCA 90 bp | CTGCACCACTGTACAGACCAACCCATATGCATATACATATACATGGCCACATGTGATCTACATTACATGTaGAAACAAAGATGGCTGGTG | + |
|
Preference number: 2 (lower is better) Translates to: LHHCTDQPICIYIYMATCDLHYM*KQRWLV Trigger: CACCAGCCATCTTTGTTTGCACATGTAATGTAGATC...ACATGTGGCCATGTATATGTATATGCATATGGGTTGGTCTGTACAGTGGTGCAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
||
| 3UTR-3UTR TCA 90 bp | ATAGACATACGAACACAAGAGTTCAGAATTAAGAACTTCGTGGTACATGTTAAGGTTTACAAGATGACTTaGTCCCACAGGCCAACTCCA | + |
|
Preference number: 2 (lower is better) Translates to: IDIRTQEFRIKNFVVHVKVYKMT*SHRPTP Trigger: TGGAGTTGGCCTGTGGGATCAAGTCATCTTGTAAAC...CTTAACATGTACCACGAAGTTCTTAATTCTGAACTCTTGTGTTCGTATGTCTAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
||
| 3UTR-3UTR CCA 90 bp | ATAGACATACGAACACAAGAGTTCAGAATTAAGAACTTCGTGGTACATGTTAAGACACTCTCCCTTACATaGTTGTCAAGACAAAGCAGG | + |
|
Preference number: 2 (lower is better) Translates to: IDIRTQEFRIKNFVVHVKTLSLT*LSRQSR Trigger: CCTGCTTTGTCTTGACAACCATGTAAGGGAGAGTGT...CTTAACATGTACCACGAAGTTCTTAATTCTGAACTCTTGTGTTCGTATGTCTAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
||
| 3UTR CAA 90 bp | TCCATTAGAGTTAAGAAGAATTCCTTTAAAAAGGACTTACTTTCCTaGGAAAAGGCTAACAGTCACTGGATACAGGTCAGGAGTTATCTT | + |
|
Preference number: 2 (lower is better) Translates to: SIRVKKNSFKKDLLS*EKANSHWIQVRSYL Trigger: AAGATAACTCCTGACCTGTATCCAGTGACTGTTAGCCTTTTCCAAGGAAAGTAAGTCCTTTTTAAAGGAATTCTTCTTAACTCTAATGGA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
||
| 3UTR CCA 72 bp | GGGACCGAGACATGCATCCTTTCTCTGGCAGGCCAGTaGCGGCTGGTGGTGGAAGCAGTGGCGTGGCTGGCC | + |
|
Preference number: 3 (lower is better) Translates to: GTETCILSLAGQ*RLVVEAVAWLA Trigger: GGCCAGCCACGCCACTGCTTCCACCACCAGCCGCCACTGGCCTGCCAGAGAAAGGATGCATGTCTCGGTCCC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
||
| 3UTR GCA 72 bp | AGGAAGGAAGGAGGAGGCGGGCTGGGGACCGAGACATaGATCCTTTCTCTGGCAGGCCAGTGGCGGCTGGTG | + |
|
Preference number: 3 (lower is better) Translates to: RKEGGGGLGTET*ILSLAGQWRLV Trigger: CACCAGCCGCCACTGGCCTGCCAGAGAAAGGATGCATGTCTCGGTCCCCAGCCCGCCTCCTCCTTCCTTCCT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
||
| 3UTR CCA 72 bp | GCCAGTGGCGGCTGGTGGTGGAAGCAGTGGCGTGGCTaGCCTTCAACCTCTGCAAGGCACCTAGAGTCTGGG | + |
|
Preference number: 3 (lower is better) Translates to: ASGGWWWKQWRG*PSTSARHLESG Trigger: CCCAGACTCTAGGTGCCTTGCAGAGGTTGAAGGCCAGCCACGCCACTGCTTCCACCACCAGCCGCCACTGGC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
||
| 3UTR CCA 72 bp | GCAGGCCAGTGGCGGCTGGTGGTGGAAGCAGTGGCGTaGCTGGCCTTCAACCTCTGCAAGGCACCTAGAGTC | + |
|
Preference number: 3 (lower is better) Translates to: AGQWRLVVEAVA*LAFNLCKAPRV Trigger: GACTCTAGGTGCCTTGCAGAGGTTGAAGGCCAGCCACGCCACTGCTTCCACCACCAGCCGCCACTGGCCTGC 65% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
||
| 3UTR CCA 72 bp | GCATCCTTTCTCTGGCAGGCCAGTGGCGGCTGGTGGTaGAAGCAGTGGCGTGGCTGGCCTTCAACCTCTGCA | + |
|
Preference number: 3 (lower is better) Translates to: ASFLWQASGGWW*KQWRGWPSTSA Trigger: TGCAGAGGTTGAAGGCCAGCCACGCCACTGCTTCCACCACCAGCCGCCACTGGCCTGCCAGAGAAAGGATGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
||
| 3UTR CCA 72 bp | CATGCATCCTTTCTCTGGCAGGCCAGTGGCGGCTGGTaGTGGAAGCAGTGGCGTGGCTGGCCTTCAACCTCT | + |
|
Preference number: 3 (lower is better) Translates to: HASFLWQASGGW*WKQWRGWPSTS Trigger: AGAGGTTGAAGGCCAGCCACGCCACTGCTTCCACCACCAGCCGCCACTGGCCTGCCAGAGAAAGGATGCATG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
||
| 3UTR TCA 72 bp | ACAAAGATGGCTGGTGGGCGTCTGGTGGGCCATGGATaGAAAGATGGCTGGTGGGCGTCTGGTGGGCCATGG | + |
|
Preference number: 3 (lower is better) Translates to: TKMAGGRLVGHG*KDGWWASGGPW Trigger: CCATGGCCCACCAGACGCCCACCAGCCATCTTTTCATCCATGGCCCACCAGACGCCCACCAGCCATCTTTGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
||
| 3UTR CCA 72 bp | GGCTGGTGGGCGTCTGGTGGGCCATGGATGAAAAGATaGCTGGTGGGCGTCTGGTGGGCCATGGGTGAAAAA | + |
|
Preference number: 3 (lower is better) Translates to: GWWASGGPWMKR*LVGVWWAMGEK Trigger: TTTTTCACCCATGGCCCACCAGACGCCCACCAGCCATCTTTTCATCCATGGCCCACCAGACGCCCACCAGCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
||
| 3UTR CCA 72 bp | GCAAACAAAGATGGCTGGTGGGCGTCTGGTGGGCCATaGATGAAAAGATGGCTGGTGGGCGTCTGGTGGGCC | + |
|
Preference number: 3 (lower is better) Translates to: ANKDGWWASGGP*MKRWLVGVWWA Trigger: GGCCCACCAGACGCCCACCAGCCATCTTTTCATCCATGGCCCACCAGACGCCCACCAGCCATCTTTGTTTGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
||
| 3UTR GCA 72 bp | GAGCTGCCCTTGAACTCACAGAGATCCACCTGCCTCTaGCTCCCAAATGCCAGGGTTAAGGGCATGCGCCAC | + |
|
Preference number: 3 (lower is better) Translates to: ELPLNSQRSTCL*LPNARVKGMRH Trigger: GTGGCGCATGCCCTTAACCCTGGCATTTGGGAGGCAGAGGCAGGTGGATCTCTGTGAGTTCAAGGGCAGCTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
||
| 3UTR CCA 72 bp | TTGGAAATGTTGGGAATAGGTAGGGCAACAACCTCTTaGTTCCCACGAGGAGGCTCATCTCCACCCCGCCCC | + |
|
Preference number: 3 (lower is better) Translates to: LEMLGIGRATTS*FPRGGSSPPRP Trigger: GGGGCGGGGTGGAGATGAGCCTCCTCGTGGGAACCAAGAGGTTGTTGCCCTACCTATTCCCAACATTTCCAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
||
| 3UTR CCA 72 bp | TACATGTGCAAACAAAGATGGCTGGTGGGCGTCTGGTaGGCCATGGATGAAAAGATGGCTGGTGGGCGTCTG | + |
|
Preference number: 3 (lower is better) Translates to: YMCKQRWLVGVW*AMDEKMAGGRL Trigger: CAGACGCCCACCAGCCATCTTTTCATCCATGGCCCACCAGACGCCCACCAGCCATCTTTGTTTGCACATGTA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
||
| 3UTR TCA 72 bp | GAAAAGATGGCTGGTGGGCGTCTGGTGGGCCATGGGTaGAAAAGAGAAGTAGGCAGTCTCCCAGATCTCTGT | + |
|
Preference number: 3 (lower is better) Translates to: EKMAGGRLVGHG*KREVGSLPDLC Trigger: ACAGAGATCTGGGAGACTGCCTACTTCTCTTTTTCACCCATGGCCCACCAGACGCCCACCAGCCATCTTTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
||
| 3UTR GCA 72 bp | TGCTGGTGTGTTAGTGTTCCGCAGACCCTGCAAAGATaGAAGAAGCAAACACCCAACATCCTCCGCCCAGCT | + |
|
Preference number: 3 (lower is better) Translates to: CWCVSVPQTLQR*KKQTPNILRPA Trigger: AGCTGGGCGGAGGATGTTGGGTGTTTGCTTCTTGCATCTTTGCAGGGTCTGCGGAACACTAACACACCAGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
||
| 3UTR CCA 72 bp | CATTACATGTGCAAACAAAGATGGCTGGTGGGCGTCTaGTGGGCCATGGATGAAAAGATGGCTGGTGGGCGT | + |
|
Preference number: 3 (lower is better) Translates to: HYMCKQRWLVGV*WAMDEKMAGGR Trigger: ACGCCCACCAGCCATCTTTTCATCCATGGCCCACCAGACGCCCACCAGCCATCTTTGTTTGCACATGTAATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
||
| 3UTR TCA 72 bp | CCAGCCTCCACCTGCCATGCTTTAATTAAAACGGCGTaGGTTACAAACAGGCGCACTCTCTGCCGGGATTCA | + |
|
Preference number: 3 (lower is better) Translates to: PASTCHALIKTA*VTNRRTLCRDS Trigger: TGAATCCCGGCAGAGAGTGCGCCTGTTTGTAACTCACGCCGTTTTAATTAAAGCATGGCAGGTGGAGGCTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000009791.7 ENSMUST00000020312.13 |
||
| 3UTR TCA 72 bp | GTCCAGCTTAAAATGAAGGCCAGGTCCAGCTTAAAATaGAGGCTAGCCGCACTGGCCCAGACTCTGCCATTC | + |
|
Preference number: 3 (lower is better) Translates to: VQLKMKARSSLK*RLAALAQTLPF Trigger: GAATGGCAGAGTCTGGGCCAGTGCGGCTAGCCTTCATTTTAAGCTGGACCTGGCCTTCATTTTAAGCTGGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
||
| 3UTR CCA 72 bp | GCCCAGCTGCGACGGAGTCTTCACTCTCATCCGAAATaGAGATGCTTAAGACAAGACTCGCTAAGCCCTTTG | + |
|
Preference number: 3 (lower is better) Translates to: AQLRRSLHSHPK*RCLRQDSLSPL Trigger: CAAAGGGCTTAGCGAGTCTTGTCTTAAGCATCTCCATTTCGGATGAGAGTGAAGACTCCGTCGCAGCTGGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
||
| 3UTR-3UTR CAA 90 bp | CAAAGATGCAAGAAGCAAACACCCAACATCCTCCGCCCAGCTGCGACGGAGTCTCTAAGCCCTTTGCACTaGGATTCCATGATGCTGGAT | + |
|
Preference number: 3 (lower is better) Translates to: QRCKKQTPNILRPAATESLSPLH*DSMMLD Trigger: ATCCAGCATCATGGAATCCAAGTGCAAAGGGCTTAG...AGACTCCGTCGCAGCTGGGCGGAGGATGTTGGGTGTTTGCTTCTTGCATCTTTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
||
| 3UTR-3UTR CAA 90 bp | TGGGGTGCTGGTGTGTTAGTGTTCCGCAGACCCTGCAAAGATGCAAGAAGCAAAGACTCGCTAAGCCCTTaGCACTTGGATTCCATGATG | + |
|
Preference number: 3 (lower is better) Translates to: WGAGVLVFRRPCKDARSKDSLSP*HLDSMM Trigger: CATCATGGAATCCAAGTGCAAAGGGCTTAGCGAGTC...TTTGCTTCTTGCATCTTTGCAGGGTCTGCGGAACACTAACACACCAGCACCCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
||
| 3UTR GCA 72 bp | CTGCGACGGAGTCTTCACTCTCATCCGAAATGGAGATaGTTAAGACAAGACTCGCTAAGCCCTTTGCACTTG | + |
|
Preference number: 3 (lower is better) Translates to: LRRSLHSHPKWR*LRQDSLSPLHL Trigger: CAAGTGCAAAGGGCTTAGCGAGTCTTGTCTTAAGCATCTCCATTTCGGATGAGAGTGAAGACTCCGTCGCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
||
| 3UTR CCA 72 bp | CAAGGCTCTGTGCACAGCAGCATACAGCATGCCTCGTaGCTTTTCTTATGCTGCTGCAGTATATTCCCTAGA | + |
|
Preference number: 3 (lower is better) Translates to: QGSVHSSIQHAS*LFLCCCSIFPR Trigger: TCTAGGGAATATACTGCAGCAGCATAAGAAAAGCCACGAGGCATGCTGTATGCTGCTGTGCACAGAGCCTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
||
| 3UTR GCA 72 bp | CCCACACTCAGAGGATTTGCTCATTGCACTGTGCCATaGCTTCTTAAGAACCCTGCACACAAACAGGATAGA | + |
|
Preference number: 3 (lower is better) Translates to: PTLRGFAHCTVP*LLKNPAHKQDR Trigger: TCTATCCTGTTTGTGTGCAGGGTTCTTAAGAAGGCATGGCACAGTGCAATGAGCAAATCCTCTGAGTGTGGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
||
| 3UTR GCA 72 bp | TCCTTCCCAGTAGCCTGCGAATGTTCAAGTTTCCCCTaGATGAACAGGTCCCATCACCAATACCTAAAGACA | + |
|
Preference number: 3 (lower is better) Translates to: SFPVACECSSFP*MNRSHHQYLKT Trigger: TGTCTTTAGGTATTGGTGATGGGACCTGTTCATGCAGGGGAAACTTGAACATTCGCAGGCTACTGGGAAGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
||
| 3UTR CCA 72 bp | AAGATCTACATTACATGTGCAAACAAAGATGGCTGGTaGGCGTCTGGTGGGCCATGGATGAAAAGATGGCTG | + |
|
Preference number: 3 (lower is better) Translates to: KIYITCANKDGW*ASGGPWMKRWL Trigger: CAGCCATCTTTTCATCCATGGCCCACCAGACGCCCACCAGCCATCTTTGTTTGCACATGTAATGTAGATCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
||
| 3UTR CCA 72 bp | AAGCCAGAAGATCTACATTACATGTGCAAACAAAGATaGCTGGTGGGCGTCTGGTGGGCCATGGATGAAAAG | + |
|
Preference number: 3 (lower is better) Translates to: KPEDLHYMCKQR*LVGVWWAMDEK Trigger: CTTTTCATCCATGGCCCACCAGACGCCCACCAGCCATCTTTGTTTGCACATGTAATGTAGATCTTCTGGCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
||
| 3UTR CCA 72 bp | TTCTGGGGAGAATCAATGAGTCTAAAGAGCATCTACTaGGTGGGCGCCAACAGAGCAAGGCTTTCAAGACTT | + |
|
Preference number: 3 (lower is better) Translates to: FWGESMSLKSIY*VGANRARLSRL Trigger: AAGTCTTGAAAGCCTTGCTCTGTTGGCGCCCACCCAGTAGATGCTCTTTAGACTCATTGATTCTCCCCAGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
||
| 3UTR-3UTR CAA 90 bp | CTGCACCACTGTACAGACCAACCCATATGCATATACATATACATGGCCACATGTCTCTCCCTTACATGGTaGTCAAGACAAAGCAGGGGA | + |
|
Preference number: 3 (lower is better) Translates to: LHHCTDQPICIYIYMATCLSLTW*SRQSRG Trigger: TCCCCTGCTTTGTCTTGACAACCATGTAAGGGAGAG...ACATGTGGCCATGTATATGTATATGCATATGGGTTGGTCTGTACAGTGGTGCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
||
| 3UTR-3UTR CAA 90 bp | AGGAGGCTCATCTCCACCCCGCCCCCACTTGCTAATATTAGATCAAGCATGTATAAGGACTTACTTTCCTaGGAAAAGGCTAACAGTCAC | + |
|
Preference number: 3 (lower is better) Translates to: RRLISTPPPLANIRSSMYKDLLS*EKANSH Trigger: GTGACTGTTAGCCTTTTCCAAGGAAAGTAAGTCCTT...ATACATGCTTGATCTAATATTAGCAAGTGGGGGCGGGGTGGAGATGAGCCTCCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
||
| 3UTR GCA 72 bp | CACAGCAGCATACAGCATGCCTCGTGGCTTTTCTTATaGTGCTGCAGTATATTCCCTAGATACGGATCTATA | + |
|
Preference number: 3 (lower is better) Translates to: HSSIQHASWLFL*CCSIFPRYGSI Trigger: TATAGATCCGTATCTAGGGAATATACTGCAGCAGCATAAGAAAAGCCACGAGGCATGCTGTATGCTGCTGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
||
| 3UTR GCA 72 bp | TACCCAATAACAAATGATGAGCCCCGAGATCACACCTaGACCACTGTACAGACCAACCCATATGCATATACA | + |
|
Preference number: 3 (lower is better) Translates to: YPITNDEPRDHT*TTVQTNPYAYT Trigger: TGTATATGCATATGGGTTGGTCTGTACAGTGGTGCAGGTGTGATCTCGGGGCTCATCATTTGTTATTGGGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
||
| 3UTR-3UTR CAA 90 bp | GCTTTTATTCACAGAAGAGCTCCTGCAATCAAGGCTCTGTGCACAGCAGCATACACACAAATTCCTAAGTaGTTTCTTCCTCTGTCACAG | + |
|
Preference number: 3 (lower is better) Translates to: AFIHRRAPAIKALCTAAYTQIPK*FLPLSQ Trigger: CTGTGACAGAGGAAGAAACAACTTAGGAATTTGTGT...GTATGCTGCTGTGCACAGAGCCTTGATTGCAGGAGCTCTTCTGTGAATAAAAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
||
| 3UTR CCA 72 bp | TGGCTGGCCTTCAACCTCTGCAAGGCACCTAGAGTCTaGGTTTGTCATTCAAAGGTTTTCTTTCATATACAA | + |
|
Preference number: 3 (lower is better) Translates to: WLAFNLCKAPRV*VCHSKVFFHIQ Trigger: TTGTATATGAAAGAAAACCTTTGAATGACAAACCCAGACTCTAGGTGCCTTGCAGAGGTTGAAGGCCAGCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
||
| 3UTR TCA 72 bp | AAGGCTTTCAAGACTTGGAAGAGCCTCCAAAATAGCTaGCCTGTCTTGTCGTTGTTATACCACAGTAAGTCT | + |
|
Preference number: 3 (lower is better) Translates to: KAFKTWKSLQNS*PVLSLLYHSKS Trigger: AGACTTACTGTGGTATAACAACGACAAGACAGGTCAGCTATTTTGGAGGCTCTTCCAAGTCTTGAAAGCCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
||
| 3UTR CCA 72 bp | AAGGACTTACTTTCCTTGGAAAAGGCTAACAGTCACTaGATACAGGTCAGGAGTTATCTTTTCCTCCTACCT | + |
|
Preference number: 3 (lower is better) Translates to: KDLLSLEKANSH*IQVRSYLFLLP Trigger: AGGTAGGAGGAAAAGATAACTCCTGACCTGTATCCAGTGACTGTTAGCCTTTTCCAAGGAAAGTAAGTCCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
||
| 3UTR-3UTR CAA 90 bp | GTGTGCAGGAAGTGGGGGTTATCAATGGGATCAGTATATAAAGGAAGGAATTTTAACCCTCATGCAGTATaGCCAGTGACTTCTAGACAT | + |
|
Preference number: 3 (lower is better) Translates to: VCRKWGLSMGSVYKGRNFNPHAV*PVTSRH Trigger: ATGTCTAGAAGTCACTGGCAATACTGCATGAGGGTT...AAAATTCCTTCCTTTATATACTGATCCCATTGATAACCCCCACTTCCTGCACAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
||
| 3UTR TCA 72 bp | CATGGCCACATGTGTCAACAACGGCCAGGAGGGAAATaGTATCACTGTAACCCTAAACACAAAAGAAATAAT | + |
|
Preference number: 3 (lower is better) Translates to: HGHMCQQRPGGK*YHCNPKHKRNN Trigger: ATTATTTCTTTTGTGTTTAGGGTTACAGTGATATCATTTCCCTCCTGGCCGTTGTTGACACATGTGGCCATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
||
| 3UTR CCA 72 bp | GAGTTCAGAATTAAGAACTTCGTGGTACATGTTAAGTaGTCTATGATGTGCATGTGCATGGAATGGATTCCC | + |
|
Preference number: 3 (lower is better) Translates to: EFRIKNFVVHVK*SMMCMCMEWIP Trigger: GGGAATCCATTCCATGCACATGCACATCATAGACCACTTAACATGTACCACGAAGTTCTTAATTCTGAACTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
||
| 3UTR CCA 72 bp | TGTCTAAAAACATTGAGCTGGGGTAAAGCTAAAGACTaGAGCATTGTGAGAGAACTAAACTCAGAAGGAAGG | + |
|
Preference number: 3 (lower is better) Translates to: CLKTLSWGKAKD*SIVRELNSEGR Trigger: CCTTCCTTCTGAGTTTAGTTCTCTCACAATGCTCCAGTCTTTAGCTTTACCCCAGCTCAATGTTTTTAGACA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
||
| 3UTR-3UTR CAA 90 bp | GCTCTCATAGCTCTCATAGCTTTACTTAAGAGTGAAGAGGAGACTTTCCAATCAGATCTTTTGGAAATGTaGGGAATAGGTAGGGCAACA | + |
|
Preference number: 3 (lower is better) Translates to: ALIALIALLKSEEETFQSDLLEM*GIGRAT Trigger: TGTTGCCCTACCTATTCCCAACATTTCCAAAAGATC...TGATTGGAAAGTCTCCTCTTCACTCTTAAGTAAAGCTATGAGAGCTATGAGAGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
||
| 3UTR-3UTR CAA 90 bp | GCTCTCATAGCTCTCATAGCTTTACTTAAGAGTGAAGAGGAGACTTTCCAATCAAGACCCATTGATCTTTaGGAAATGTTGGGAATAGGT | + |
|
Preference number: 3 (lower is better) Translates to: ALIALIALLKSEEETFQSRPIDL*EMLGIG Trigger: ACCTATTCCCAACATTTCCAAAAGATCAATGGGTCT...TGATTGGAAAGTCTCCTCTTCACTCTTAAGTAAAGCTATGAGAGCTATGAGAGC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
||
| 3UTR GCA 72 bp | AGCATACAGCATGCCTCGTGGCTTTTCTTATGCTGCTaGAGTATATTCCCTAGATACGGATCTATAAATAAA | + |
|
Preference number: 3 (lower is better) Translates to: SIQHASWLFLCC*SIFPRYGSINK Trigger: TTTATTTATAGATCCGTATCTAGGGAATATACTGCAGCAGCATAAGAAAAGCCACGAGGCATGCTGTATGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
||
| 3UTR TCA 72 bp | CTTTTCCTCCTACCTATGTTGATGAATTTTGCAATATaGAAGTCCAACAATAGACATACGAACACAAGAGTT | + |
|
Preference number: 3 (lower is better) Translates to: LFLLPMLMNFAI*KSNNRHTNTRV Trigger: AACTCTTGTGTTCGTATGTCTATTGTTGGACTTTCATATTGCAAAATTCATCAACATAGGTAGGAGGAAAAG 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
||
| CDS-3UTR GCA 90 bp | CATGGAATGGATTCCCATGAGGTCCGTGGCACTGGGGCACTTTCAAAGCGGAGCAAGCCCGTCCGGTGCTaGTGGTGCGGCCGGTGGCGG | + |
|
Preference number: 4 (lower is better) Translates to: HGMDSHEVRGTGALSKRSKPVRC*WCGRWR Trigger: CCGCCACCGGCCGCACCAGCAGCACCGGACGGGCTT...GCTCCGCTTTGAAAGTGCCCCAGTGCCACGGACCTCATGGGAATCCATTCCATG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
||
| CDS-3UTR GCA 90 bp | TTTCTCTGGCAGGCCAGTGGCGGCTGGTGGTGGAAGCAGTGGCGTGGCTGGCCTGCTGATGCTGCTCAATaGACAGTGTGGTGTACAGCT | + |
|
Preference number: 4 (lower is better) Translates to: FLWQASGGWWWKQWRGWPADAAQ*TVWCTA Trigger: AGCTGTACACCACACTGTGCATTGAGCAGCATCAGC...AGGCCAGCCACGCCACTGCTTCCACCACCAGCCGCCACTGGCCTGCCAGAGAAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
||
| CDS-3UTR TCA 90 bp | ATGAGCACGGGCCTTCTGATCCGTGGTGTGCAGGAAGTGGGGGTTATCAATGGGAGTACTCCCACCAGGTaGGCCGGGCCAGAATGCCAA | + |
|
Preference number: 4 (lower is better) Translates to: MSTGLLIRGVQEVGVINGSTPTR*AGPECQ Trigger: TTGGCATTCTGGCCCGGCTCACCTGGTGGGAGTACT...CCCATTGATAACCCCCACTTCCTGCACACCACGGATCAGAAGGCCCGTGCTCAT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
||
| CDS-3UTR TCA 90 bp | GCTGGGGACCGAGACATGCATCCTTTCTCTGGCAGGCCAGTGGCGGCTGGTGGTCGCTCTTTGTTAAGCTaGTGCTGCTCAATGCACAGT | + |
|
Preference number: 4 (lower is better) Translates to: AGDRDMHPFSGRPVAAGGRSLLS*CCSMHS Trigger: ACTGTGCATTGAGCAGCATCAGCTTAACAAAGAGCG...ACCACCAGCCGCCACTGGCCTGCCAGAGAAAGGATGCATGTCTCGGTCCCCAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
||
| CDS-3UTR GCA 90 bp | CTGCACCACTGTACAGACCAACCCATATGCATATACATATACATGGCCACATGTGTCCGGTGCTGCTGGTaGGGCCGGTGGCGGCTGACG | + |
|
Preference number: 4 (lower is better) Translates to: LHHCTDQPICIYIYMATCVRCCW*GRWRLT Trigger: CGTCAGCCGCCACCGGCCGCACCAGCAGCACCGGAC...ACATGTGGCCATGTATATGTATATGCATATGGGTTGGTCTGTACAGTGGTGCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
||
| CDS-3UTR CCA 90 bp | GCTGGGGACCGAGACATGCATCCTTTCTCTGGCAGGCCAGTGGCGGCTGGTGGTTCTGTCTCTGGCTTCTaGATAAACATATTCCTGGCG | + |
|
Preference number: 4 (lower is better) Translates to: AGDRDMHPFSGRPVAAGGSVSGF*INIFLA Trigger: CGCCAGGAATATGTTTATCCAGAAGCCAGAGACAGA...ACCACCAGCCGCCACTGGCCTGCCAGAGAAAGGATGCATGTCTCGGTCCCCAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
||
| CDS-3UTR TCA 90 bp | GGCCTTCTGATCCGTGGTGTGCAGGAAGTGGGGGTTATCAATGGGATCAGTATATCGAACGCCATCTGGTaGGTAGATGGCGACCCGGTC | + |
|
Preference number: 4 (lower is better) Translates to: GLLIRGVQEVGVINGISISNAIW*VDGDPV Trigger: GACCGGGTCGCCATCTACTCACCAGATGGCGTTCGA...TATACTGATCCCATTGATAACCCCCACTTCCTGCACACCACGGATCAGAAGGCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
||
| CDS-3UTR GCA 90 bp | TTAGAATTAAAGGTAAAAACCCTCTACCCCAGCCTCCACCTGCCATGCTTTAATTGTGCCGTCCGGTGCTaGTGGTGCGGCCGGTGGCGG | + |
|
Preference number: 4 (lower is better) Translates to: LELKVKTLYPSLHLPCFNCAVRC*WCGRWR Trigger: CCGCCACCGGCCGCACCAGCAGCACCGGACGGCACA...ATTAAAGCATGGCAGGTGGAGGCTGGGGTAGAGGGTTTTTACCTTTAATTCTAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
||
| CDS-3UTR TCA 90 bp | GCTGGGGACCGAGACATGCATCCTTTCTCTGGCAGGCCAGTGGCGGCTGGTGGTGAGCAATTGCATCCTTaGGCTGATTGTATTTCTCTA | + |
|
Preference number: 4 (lower is better) Translates to: AGDRDMHPFSGRPVAAGGEQLHP*ADCISL Trigger: TAGAGAAATACAATCAGCTCAAGGATGCAATTGCTC...ACCACCAGCCGCCACTGGCCTGCCAGAGAAAGGATGCATGTCTCGGTCCCCAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
||
| CDS-3UTR GCA 90 bp | GTGTGCAGGAAGTGGGGGTTATCAATGGGATCAGTATATAAAGGAAGGAATTTTGTCCGGTGCTGCTGGTaGGGCCGGTGGCGGCTGACG | + |
|
Preference number: 4 (lower is better) Translates to: VCRKWGLSMGSVYKGRNFVRCCW*GRWRLT Trigger: CGTCAGCCGCCACCGGCCGCACCAGCAGCACCGGAC...AAAATTCCTTCCTTTATATACTGATCCCATTGATAACCCCCACTTCCTGCACAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
||
| CDS-3UTR CCA 90 bp | GGCCTTCTGATCCGTGGTGTGCAGGAAGTGGGGGTTATCAATGGGATCAGTATAGTGGTGTACAGCTGCTaGACCAGGGTCTTCACGTCG | + |
|
Preference number: 4 (lower is better) Translates to: GLLIRGVQEVGVINGISIVVYSC*TRVFTS Trigger: CGACGTGAAGACCCTGGTCCAGCAGCTGTACACCAC...TATACTGATCCCATTGATAACCCCCACTTCCTGCACACCACGGATCAGAAGGCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
||
| CDS-3UTR CCA 90 bp | GTAGGTAGGTGGTCAGAAAAGGGGTGCAGGGCCGAGAGATTCTGGTACCTTTGCGCTCAATGCACAGTGTaGTGTACAGCTGCTGGACCA | + |
|
Preference number: 4 (lower is better) Translates to: VGRWSEKGCRAERFWYLCAQCTV*CTAAGP Trigger: TGGTCCAGCAGCTGTACACCACACTGTGCATTGAGC...GCAAAGGTACCAGAATCTCTCGGCCCTGCACCCCTTTTCTGACCACCTACCTAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
||
| CDS-3UTR GCA 90 bp | GCAAGGCACCTAGAGTCTGGGTTTGTCATTCAAAGGTTTTCTTTCATATACAATGCGGCTCCCACGCTCTaGCAGGAAGCCGGCCTCTGG | + |
|
Preference number: 4 (lower is better) Translates to: ARHLESGFVIQRFSFIYNAAPTL*QEAGLW Trigger: CCAGAGGCCGGCTTCCTGGCAGAGCGTGGGAGCCGC...ATTGTATATGAAAGAAAACCTTTGAATGACAAACCCAGACTCTAGGTGCCTTGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
||
| CDS-3UTR TCA 90 bp | TTAGAATTAAAGGTAAAAACCCTCTACCCCAGCCTCCACCTGCCATGCTTTAATGGGCCAGCTGCTGCTTaGGGTCCTCTAACCTCTCCA | + |
|
Preference number: 4 (lower is better) Translates to: LELKVKTLYPSLHLPCFNGPAAA*GPLTSP Trigger: TGGAGAGGTTAGAGGACCTCAAGCAGCAGCTGGCCC...ATTAAAGCATGGCAGGTGGAGGCTGGGGTAGAGGGTTTTTACCTTTAATTCTAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000009791.7 ENSMUST00000020312.13 |
||
| CDS-3UTR GCA 90 bp | CAAAGATGCAAGAAGCAAACACCCAACATCCTCCGCCCAGCTGCGACGGAGTCTTTCTGCCTGAGCAATTaGATCCTTGAGCTGATTGTA | + |
|
Preference number: 4 (lower is better) Translates to: QRCKKQTPNILRPAATESFCLSN*ILELIV Trigger: TACAATCAGCTCAAGGATGCAATTGCTCAGGCAGAA...AGACTCCGTCGCAGCTGGGCGGAGGATGTTGGGTGTTTGCTTCTTGCATCTTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
||
| 3UTR CAA 72 bp | CTTCGAAGAGTGAGCCTGAGTCACCTTGAATCTCAGTaGGTCTTTACACGCGTGATTAGGCTTTGGGAGGAC | + |
|
Preference number: 4 (lower is better) Translates to: LRRVSLSHLESQ*VFTRVIRLWED Trigger: GTCCTCCCAAAGCCTAATCACGCGTGTAAAGACCAACTGAGATTCAAGGTGACTCAGGCTCACTCTTCGAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
||
| CDS-3UTR TCA 90 bp | GATGCTGGATCCTCAGCATTTAAGATCCCTTTATTCCCTAAGATCCTTTTTGTGAGTACTCCCACCAGGTaGGCCGGGCCAGAATGCCAA | + |
|
Preference number: 4 (lower is better) Translates to: DAGSSAFKIPLFPKILFVSTPTR*AGPECQ Trigger: TTGGCATTCTGGCCCGGCTCACCTGGTGGGAGTACT...CACAAAAAGGATCTTAGGGAATAAAGGGATCTTAAATGCTGAGGATCCAGCATC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000009791.7 ENSMUST00000020312.13 |
||
| CDS-3UTR GCA 90 bp | ATGCTTAAGACAAGACTCGCTAAGCCCTTTGCACTTGGATTCCATGATGCTGGACCCCGATCCTCCTCTTaGAGTTGTCGTAAAAACACG | + |
|
Preference number: 4 (lower is better) Translates to: MLKTRLAKPFALGFHDAGPRSSS*SCRKNT Trigger: CGTGTTTTTACGACAACTGCAAGAGGAGGATCGGGG...TCCAGCATCATGGAATCCAAGTGCAAAGGGCTTAGCGAGTCTTGTCTTAAGCAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
||
| CDS-3UTR CCA 90 bp | GATGCTGGATCCTCAGCATTTAAGATCCCTTTATTCCCTAAGATCCTTTTTGTGGTGGTGTACAGCTGCTaGACCAGGGTCTTCACGTCG | + |
|
Preference number: 4 (lower is better) Translates to: DAGSSAFKIPLFPKILFVVVYSC*TRVFTS Trigger: CGACGTGAAGACCCTGGTCCAGCAGCTGTACACCAC...CACAAAAAGGATCTTAGGGAATAAAGGGATCTTAAATGCTGAGGATCCAGCATC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000009791.7 ENSMUST00000020312.13 |
||
| CDS-3UTR CCA 90 bp | TTAGAATTAAAGGTAAAAACCCTCTACCCCAGCCTCCACCTGCCATGCTTTAATGCTCAATGCACAGTGTaGTGTACAGCTGCTGGACCA | + |
|
Preference number: 4 (lower is better) Translates to: LELKVKTLYPSLHLPCFNAQCTV*CTAAGP Trigger: TGGTCCAGCAGCTGTACACCACACTGTGCATTGAGC...ATTAAAGCATGGCAGGTGGAGGCTGGGGTAGAGGGTTTTTACCTTTAATTCTAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000009791.7 ENSMUST00000020312.13 |
||
| CDS-3UTR CCA 90 bp | ATGATGCTGGATCCTCAGCATTTAAGATCCCTTTATTCCCTAAGATCCTTTTTGGAATGCCAAACTGGGTaGCCATGTAGGCCAGGCCTC | + |
|
Preference number: 4 (lower is better) Translates to: MMLDPQHLRSLYSLRSFLECQTG*PCRPGL Trigger: GAGGCCTGGCCTACATGGCCACCCAGTTTGGCATTC...CAAAAAGGATCTTAGGGAATAAAGGGATCTTAAATGCTGAGGATCCAGCATCAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000009791.7 ENSMUST00000020312.13 |
||
| CDS-3UTR CCA 90 bp | GCAAGGCACCTAGAGTCTGGGTTTGTCATTCAAAGGTTTTCTTTCATATACAATGGCTTGAGTGTGAATTaGCAGCGCTCGCGTCGAGAG | + |
|
Preference number: 4 (lower is better) Translates to: ARHLESGFVIQRFSFIYNGLSVN*QRSRRE Trigger: CTCTCGACGCGAGCGCTGCCAATTCACACTCAAGCC...ATTGTATATGAAAGAAAACCTTTGAATGACAAACCCAGACTCTAGGTGCCTTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
||
| CDS-3UTR CCA 90 bp | GATGCTGGATCCTCAGCATTTAAGATCCCTTTATTCCCTAAGATCCTTTTTGTGCCCACAGCACCAGAGTaGTCCTCTTCTCTGCTTTTC | + |
|
Preference number: 4 (lower is better) Translates to: DAGSSAFKIPLFPKILFVPTAPE*SSSLLF Trigger: GAAAAGCAGAGAAGAGGACCACTCTGGTGCTGTGGG...CACAAAAAGGATCTTAGGGAATAAAGGGATCTTAAATGCTGAGGATCCAGCATC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000009791.7 ENSMUST00000020312.13 |
||
| 3UTR CAA 72 bp | AAATGGAGATGCTTAAGACAAGACTCGCTAAGCCCTTaGCACTTGGATTCCATGATGCTGGATCCTCAGCAT | + |
|
Preference number: 4 (lower is better) Translates to: KWRCLRQDSLSP*HLDSMMLDPQH Trigger: ATGCTGAGGATCCAGCATCATGGAATCCAAGTGCAAAGGGCTTAGCGAGTCTTGTCTTAAGCATCTCCATTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
||
| CDS-3UTR CCA 90 bp | ATGATGCTGGATCCTCAGCATTTAAGATCCCTTTATTCCCTAAGATCCTTTTTGCCCACAGCACCAGAGTaGTCCTCTTCTCTGCTTTTC | + |
|
Preference number: 4 (lower is better) Translates to: MMLDPQHLRSLYSLRSFLPTAPE*SSSLLF Trigger: GAAAAGCAGAGAAGAGGACCACTCTGGTGCTGTGGG...CAAAAAGGATCTTAGGGAATAAAGGGATCTTAAATGCTGAGGATCCAGCATCAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000009791.7 ENSMUST00000020312.13 |
||
| CDS-3UTR GCA 90 bp | ATGATGCTGGATCCTCAGCATTTAAGATCCCTTTATTCCCTAAGATCCTTTTTGGCTGATGCTGCTCAATaGACAGTGTGGTGTACAGCT | + |
|
Preference number: 4 (lower is better) Translates to: MMLDPQHLRSLYSLRSFLADAAQ*TVWCTA Trigger: AGCTGTACACCACACTGTGCATTGAGCAGCATCAGC...CAAAAAGGATCTTAGGGAATAAAGGGATCTTAAATGCTGAGGATCCAGCATCAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000009791.7 ENSMUST00000020312.13 |
||
| CDS-3UTR CCA 90 bp | TTAGAATTAAAGGTAAAAACCCTCTACCCCAGCCTCCACCTGCCATGCTTTAATGTCGCTGCATCTTCATaGCTTAGGAGGTCTTGTTTA | + |
|
Preference number: 4 (lower is better) Translates to: LELKVKTLYPSLHLPCFNVAASS*LRRSCL Trigger: TAAACAAGACCTCCTAAGCCATGAAGATGCAGCGAC...ATTAAAGCATGGCAGGTGGAGGCTGGGGTAGAGGGTTTTTACCTTTAATTCTAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009791.7 |
||
| 3UTR CAA 72 bp | GCTTTGGGAGGACTATGTCATACACAAATTCCTAAGTaGTTTCTTCCTCTGTCACAGTGGTTCTCAACTTCC | + |
|
Preference number: 4 (lower is better) Translates to: ALGGLCHTQIPK*FLPLSQWFSTS Trigger: GGAAGTTGAGAACCACTGTGACAGAGGAAGAAACAACTTAGGAATTTGTGTATGACATAGTCCTCCCAAAGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
||
| CDS-3UTR TCA 90 bp | ATGATGCTGGATCCTCAGCATTTAAGATCCCTTTATTCCCTAAGATCCTTTTTGCGCTCTTTGTTAAGCTaGTGCTGCTCAATGCACAGT | + |
|
Preference number: 4 (lower is better) Translates to: MMLDPQHLRSLYSLRSFLRSLLS*CCSMHS Trigger: ACTGTGCATTGAGCAGCATCAGCTTAACAAAGAGCG...CAAAAAGGATCTTAGGGAATAAAGGGATCTTAAATGCTGAGGATCCAGCATCAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000009791.7 ENSMUST00000020312.13 |
||
| CDS-3UTR CCA 90 bp | GATGCTGGATCCTCAGCATTTAAGATCCCTTTATTCCCTAAGATCCTTTTTGTGTCTGTCTCTGGCTTCTaGATAAACATATTCCTGGCG | + |
|
Preference number: 4 (lower is better) Translates to: DAGSSAFKIPLFPKILFVSVSGF*INIFLA Trigger: CGCCAGGAATATGTTTATCCAGAAGCCAGAGACAGA...CACAAAAAGGATCTTAGGGAATAAAGGGATCTTAAATGCTGAGGATCCAGCATC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000009791.7 ENSMUST00000020312.13 |
||
| CDS-3UTR GCA 90 bp | GATGCTGGATCCTCAGCATTTAAGATCCCTTTATTCCCTAAGATCCTTTTTGTGTTCTGCCTGAGCAATTaGATCCTTGAGCTGATTGTA | + |
|
Preference number: 4 (lower is better) Translates to: DAGSSAFKIPLFPKILFVFCLSN*ILELIV Trigger: TACAATCAGCTCAAGGATGCAATTGCTCAGGCAGAA...CACAAAAAGGATCTTAGGGAATAAAGGGATCTTAAATGCTGAGGATCCAGCATC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000009791.7 ENSMUST00000020312.13 |
||
| CDS-3UTR TCA 90 bp | GATGCTGGATCCTCAGCATTTAAGATCCCTTTATTCCCTAAGATCCTTTTTGTGGAGCAATTGCATCCTTaGGCTGATTGTATTTCTCTA | + |
|
Preference number: 4 (lower is better) Translates to: DAGSSAFKIPLFPKILFVEQLHP*ADCISL Trigger: TAGAGAAATACAATCAGCTCAAGGATGCAATTGCTC...CACAAAAAGGATCTTAGGGAATAAAGGGATCTTAAATGCTGAGGATCCAGCATC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000009791.7 ENSMUST00000020312.13 |
||
| CDS-3UTR CCA 90 bp | GATGCTGGATCCTCAGCATTTAAGATCCCTTTATTCCCTAAGATCCTTTTTGTGTTTGGTGGCCGTACGTaGTATGTTAAGTCATTAATG | + |
|
Preference number: 4 (lower is better) Translates to: DAGSSAFKIPLFPKILFVFGGRT*YVKSLM Trigger: CATTAATGACTTAACATACCACGTACGGCCACCAAA...CACAAAAAGGATCTTAGGGAATAAAGGGATCTTAAATGCTGAGGATCCAGCATC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
||
| CDS-3UTR GCA 90 bp | ATGATGCTGGATCCTCAGCATTTAAGATCCCTTTATTCCCTAAGATCCTTTTTGCTTAAGATCCATTTCTaGCTGAGCAATTGCATCCTT | + |
|
Preference number: 4 (lower is better) Translates to: MMLDPQHLRSLYSLRSFLLKIHF*LSNCIL Trigger: AAGGATGCAATTGCTCAGGCAGAAATGGATCTTAAG...CAAAAAGGATCTTAGGGAATAAAGGGATCTTAAATGCTGAGGATCCAGCATCAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000009791.7 ENSMUST00000020312.13 |
||
| CDS TCA 90 bp | GCCTCTGGTGTGCCGTCCGGTGCTGCTGGTGCGGCCGGTGGCGGCTaGCGCCCAGCCCGGGAAAGCAGCCGGCAGTCAGCGCTCCGCAGC | + |
|
Preference number: 5 (lower is better) Translates to: ASGVPSGAAGAAGGG*RPARESSRQSALRS Trigger: GCTGCGGAGCGCTGACTGCCGGCTGCTTTCCCGGGCTGGGCGTCAGCCGCCACCGGCCGCACCAGCAGCACCGGACGGCACACCAGAGGC 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
||
| CDS GCA 90 bp | CTCTGCCAGGAAGCCGGCCTCTGGTGTGCCGTCCGGTGCTGCTGGTaGGGCCGGTGGCGGCTGACGCCCAGCCCGGGAAAGCAGCCGGCA | + |
|
Preference number: 5 (lower is better) Translates to: LCQEAGLWCAVRCCW*GRWRLTPSPGKQPA Trigger: TGCCGGCTGCTTTCCCGGGCTGGGCGTCAGCCGCCACCGGCCGCACCAGCAGCACCGGACGGCACACCAGAGGCCGGCTTCCTGGCAGAG 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
||
| CDS CCA 90 bp | GAAGCCGGCCTCTGGTGTGCCGTCCGGTGCTGCTGGTGCGGCCGGTaGCGGCTGACGCCCAGCCCGGGAAAGCAGCCGGCAGTCAGCGCT | + |
|
Preference number: 5 (lower is better) Translates to: EAGLWCAVRCCWCGR*RLTPSPGKQPAVSA Trigger: AGCGCTGACTGCCGGCTGCTTTCCCGGGCTGGGCGTCAGCCGCCACCGGCCGCACCAGCAGCACCGGACGGCACACCAGAGGCCGGCTTC 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
||
| CDS TCA 90 bp | ATGAAAGAAAGCCCGTCCGGTGCTGCTGGTGCGGCCGGTGGCGGCTaGCGCCCAGCCCGGGAAAGCAGCCGGCAGTCAGCGCTCCGCAGC | + |
|
Preference number: 5 (lower is better) Translates to: MKESPSGAAGAAGGG*RPARESSRQSALRS Trigger: GCTGCGGAGCGCTGACTGCCGGCTGCTTTCCCGGGCTGGGCGTCAGCCGCCACCGGCCGCACCAGCAGCACCGGACGGGCTTTCTTTCAT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
||
| CDS GCA 90 bp | TCATCAGAGGGCACAACCGTACTGCAATATGCGGCTCCCACGCTCTaGCAGGAAGCCGGCCTCTGGTGTGCCGTCCGGTGCTGCTGGTGC | + |
|
Preference number: 5 (lower is better) Translates to: SSEGTTVLQYAAPTL*QEAGLWCAVRCCWC Trigger: GCACCAGCAGCACCGGACGGCACACCAGAGGCCGGCTTCCTGGCAGAGCGTGGGAGCCGCATATTGCAGTACGGTTGTGCCCTCTGATGA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
||
| CDS GCA 90 bp | GTAAACCACCGTCACGTCATCAGAGGGCACAACCGTACTGCAATATaGGGCTCCCACGCTCTGCCAGGAAGCCGGCCTCTGGTGTGCCGT | + |
|
Preference number: 5 (lower is better) Translates to: VNHRHVIRGHNRTAI*GSHALPGSRPLVCR Trigger: ACGGCACACCAGAGGCCGGCTTCCTGGCAGAGCGTGGGAGCCGCATATTGCAGTACGGTTGTGCCCTCTGATGACGTGACGGTGGTTTAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
||
| CDS CCA 90 bp | CTATCCCCGTGGAGGCAGCGACTCGAACGCCATCTGGTGAGTAGATaGCGACCCGGTCGATTCCCCGATCCTCCTCTTGCAGTTGTCGTA | + |
|
Preference number: 5 (lower is better) Translates to: LSPWRQRLERHLVSR*RPGRFPDPPLAVVV Trigger: TACGACAACTGCAAGAGGAGGATCGGGGAATCGACCGGGTCGCCATCTACTCACCAGATGGCGTTCGAGTCGCTGCCTCCACGGGGATAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
||
| CDS GCA 90 bp | CATTTTGGTAAACCACCGTCACGTCATCAGAGGGCACAACCGTACTaGAATATGCGGCTCCCACGCTCTGCCAGGAAGCCGGCCTCTGGT | + |
|
Preference number: 5 (lower is better) Translates to: HFGKPPSRHQRAQPY*NMRLPRSARKPASG Trigger: ACCAGAGGCCGGCTTCCTGGCAGAGCGTGGGAGCCGCATATTGCAGTACGGTTGTGCCCTCTGATGACGTGACGGTGGTTTACCAAAATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
||
| CDS-3UTR CAA 90 bp | CCAGCTGCGACGGAGTCTTCACTCTCATCCGAAATGGAGATGCTTAAGACAAGAGGGGCCAGCTGCTGCTaGAGGTCCTCTAACCTCTCC | + |
|
Preference number: 5 (lower is better) Translates to: PAATESSLSSEMEMLKTRGASCC*RSSNLS Trigger: GGAGAGGTTAGAGGACCTCAAGCAGCAGCTGGCCCC...TCTTGTCTTAAGCATCTCCATTTCGGATGAGAGTGAAGACTCCGTCGCAGCTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
||
| CDS TCA 90 bp | TTGAGGTCCTCTAACCTCTCCACGAGCTCCCGCTCTTTGTTAAGCTaGTGCTGCTCAATGCACAGTGTGGTGTACAGCTGCTGGACCAGG | + |
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Preference number: 5 (lower is better) Translates to: LRSSNLSTSSRSLLS*CCSMHSVVYSCWTR Trigger: CCTGGTCCAGCAGCTGTACACCACACTGTGCATTGAGCAGCATCAGCTTAACAAAGAGCGGGAGCTCGTGGAGAGGTTAGAGGACCTCAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000009791.7 ENSMUST00000020312.13 |
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| CDS CCA 90 bp | CGTAAAAACACGCCGACTGAGTCAGAGATAGGCTTGAGTGTGAATTaGCAGCGCTCGCGTCGAGAGGGTAGCCTCACAGATATCACCGGT | + |
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Preference number: 5 (lower is better) Translates to: RKNTPTESEIGLSVN*QRSRREGSLTDITG Trigger: ACCGGTGATATCTGTGAGGCTACCCTCTCGACGCGAGCGCTGCCAATTCACACTCAAGCCTATCTCTGACTCAGTCGGCGTGTTTTTACG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
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| CDS CCA 90 bp | TGCTGGACCAGGGTCTTCACGTCGTTCAGCGTCGCTGCATCTTCATaGCTTAGGAGGTCTCTCTTTGGTGGCCGTACGTGGTATGTTAAG | + |
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Preference number: 5 (lower is better) Translates to: CWTRVFTSFSVAASS*LRRSLFGGRTWYVK Trigger: CTTAACATACCACGTACGGCCACCAAAGAGAGACCTCCTAAGCCATGAAGATGCAGCGACGCTGAACGACGTGAAGACCCTGGTCCAGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
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| CDS-3UTR CAA 90 bp | CTGCGACGGAGTCTTCACTCTCATCCGAAATGGAGATGCTTAAGACAAGACTCGGAGTCAGAGATAGGCTaGAGTGTGAATTGGCAGCGC | + |
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Preference number: 5 (lower is better) Translates to: LRRSLHSHPKWRCLRQDSESEIG*SVNWQR Trigger: GCGCTGCCAATTCACACTCAAGCCTATCTCTGACTC...CGAGTCTTGTCTTAAGCATCTCCATTTCGGATGAGAGTGAAGACTCCGTCGCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
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| CDS-3UTR CAA 90 bp | ATGATGCTGGATCCTCAGCATTTAAGATCCCTTTATTCCCTAAGATCCTTTTTGGGGGCCAGCTGCTGCTaGAGGTCCTCTAACCTCTCC | + |
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Preference number: 5 (lower is better) Translates to: MMLDPQHLRSLYSLRSFLGASCC*RSSNLS Trigger: GGAGAGGTTAGAGGACCTCAAGCAGCAGCTGGCCCC...CAAAAAGGATCTTAGGGAATAAAGGGATCTTAAATGCTGAGGATCCAGCATCAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000009791.7 ENSMUST00000020312.13 |
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| CDS-3UTR CAA 90 bp | CACCTAGAGTCTGGGTTTGTCATTCAAAGGTTTTCTTTCATATACAATGATCCCTTAGGAGGTCTCTCTTaGGTGGCCGTACGTGGTATG | + |
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Preference number: 5 (lower is better) Translates to: HLESGFVIQRFSFIYNDPLGGLS*VAVRGM Trigger: CATACCACGTACGGCCACCAAAGAGAGACCTCCTAA...GGGATCATTGTATATGAAAGAAAACCTTTGAATGACAAACCCAGACTCTAGGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
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| CDS GCA 72 bp | CTCTGCCAGGAAGCCGGCCTCTGGTGTGCCGTCCGGTaGTGCTGGTGCGGCCGGTGGCGGCTGACGCCCAGC | + |
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Preference number: 6 (lower is better) Translates to: LCQEAGLWCAVR*CWCGRWRLTPS Trigger: GCTGGGCGTCAGCCGCCACCGGCCGCACCAGCAGCACCGGACGGCACACCAGAGGCCGGCTTCCTGGCAGAG 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
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| CDS CCA 72 bp | CTCTGGTGTGCCGTCCGGTGCTGCTGGTGCGGCCGGTaGCGGCTGACGCCCAGCCCGGGAAAGCAGCCGGCA | + |
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Preference number: 6 (lower is better) Translates to: LWCAVRCCWCGR*RLTPSPGKQPA Trigger: TGCCGGCTGCTTTCCCGGGCTGGGCGTCAGCCGCCACCGGCCGCACCAGCAGCACCGGACGGCACACCAGAG 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
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| CDS CCA 72 bp | GAAAGAAAGCCCGTCCGGTGCTGCTGGTGCGGCCGGTaGCGGCTGACGCCCAGCCCGGGAAAGCAGCCGGCA | + |
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Preference number: 6 (lower is better) Translates to: ERKPVRCCWCGR*RLTPSPGKQPA Trigger: TGCCGGCTGCTTTCCCGGGCTGGGCGTCAGCCGCCACCGGCCGCACCAGCAGCACCGGACGGGCTTTCTTTC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161435.2 |
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| CDS GCA 72 bp | GGCACAACCGTACTGCAATATGCGGCTCCCACGCTCTaGCAGGAAGCCGGCCTCTGGTGTGCCGTCCGGTGC | + |
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Preference number: 6 (lower is better) Translates to: GTTVLQYAAPTL*QEAGLWCAVRC Trigger: GCACCGGACGGCACACCAGAGGCCGGCTTCCTGGCAGAGCGTGGGAGCCGCATATTGCAGTACGGTTGTGCC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
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| CDS TCA 72 bp | TATCCCCGTGGAGGCAGCGACTCGAACGCCATCTGGTaGGTAGATGGCGACCCGGTCGATTCCCCGATCCTC | + |
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Preference number: 6 (lower is better) Translates to: YPRGGSDSNAIW*VDGDPVDSPIL Trigger: GAGGATCGGGGAATCGACCGGGTCGCCATCTACTCACCAGATGGCGTTCGAGTCGCTGCCTCCACGGGGATA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
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| CDS GCA 72 bp | CGTCACGTCATCAGAGGGCACAACCGTACTGCAATATaGGGCTCCCACGCTCTGCCAGGAAGCCGGCCTCTG | + |
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Preference number: 6 (lower is better) Translates to: RHVIRGHNRTAI*GSHALPGSRPL Trigger: CAGAGGCCGGCTTCCTGGCAGAGCGTGGGAGCCGCATATTGCAGTACGGTTGTGCCCTCTGATGACGTGACG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
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| CDS CCA 72 bp | TGGAGGCAGCGACTCGAACGCCATCTGGTGAGTAGATaGCGACCCGGTCGATTCCCCGATCCTCCTCTTGCA | + |
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Preference number: 6 (lower is better) Translates to: WRQRLERHLVSR*RPGRFPDPPLA Trigger: TGCAAGAGGAGGATCGGGGAATCGACCGGGTCGCCATCTACTCACCAGATGGCGTTCGAGTCGCTGCCTCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
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| CDS GCA 72 bp | AAACCACCGTCACGTCATCAGAGGGCACAACCGTACTaGAATATGCGGCTCCCACGCTCTGCCAGGAAGCCG | + |
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Preference number: 6 (lower is better) Translates to: KPPSRHQRAQPY*NMRLPRSARKP Trigger: CGGCTTCCTGGCAGAGCGTGGGAGCCGCATATTGCAGTACGGTTGTGCCCTCTGATGACGTGACGGTGGTTT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
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| CDS CCA 72 bp | ACGCCGACTGAGTCAGAGATAGGCTTGAGTGTGAATTaGCAGCGCTCGCGTCGAGAGGGTAGCCTCACAGAT | + |
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Preference number: 6 (lower is better) Translates to: TPTESEIGLSVN*QRSRREGSLTD Trigger: ATCTGTGAGGCTACCCTCTCGACGCGAGCGCTGCCAATTCACACTCAAGCCTATCTCTGACTCAGTCGGCGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
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| CDS CCA 72 bp | AGGGTCTTCACGTCGTTCAGCGTCGCTGCATCTTCATaGCTTAGGAGGTCTCTCTTTGGTGGCCGTACGTGG | + |
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Preference number: 6 (lower is better) Translates to: RVFTSFSVAASS*LRRSLFGGRTW Trigger: CCACGTACGGCCACCAAAGAGAGACCTCCTAAGCCATGAAGATGCAGCGACGCTGAACGACGTGAAGACCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
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| CDS CAA 72 bp | TGTCGTAAAAACACGCCGACTGAGTCAGAGATAGGCTaGAGTGTGAATTGGCAGCGCTCGCGTCGAGAGGGT | + |
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Preference number: 6 (lower is better) Translates to: CRKNTPTESEIG*SVNWQRSRREG Trigger: ACCCTCTCGACGCGAGCGCTGCCAATTCACACTCAAGCCTATCTCTGACTCAGTCGGCGTGTTTTTACGACA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
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| CDS CAA 90 bp | TCTTGCAGTTGTCGTAAAAACACGCCGACTGAGTCAGAGATAGGCTaGAGTGTGAATTGGCAGCGCTCGCGTCGAGAGGGTAGCCTCACA | + |
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Preference number: 6 (lower is better) Translates to: SCSCRKNTPTESEIG*SVNWQRSRREGSLT Trigger: TGTGAGGCTACCCTCTCGACGCGAGCGCTGCCAATTCACACTCAAGCCTATCTCTGACTCAGTCGGCGTGTTTTTACGACAACTGCAAGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020312.13 |
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