Pregenerated sensors for MCTS2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000042814Ensembl transcript IDs: ENSMUST00000062148.9
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | ACATACAGACACACACAGAGATACAACGCAATATTTATATTTAGCTCAGGTGTACCGACACACAGGGCATaGTCTTTCCCCTCTGCCATG | + |
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Preference number: 4 (lower is better) Translates to: TYRHTQRYNAIFIFSSGVPTHRA*SFPSAM Trigger: CATGGCAGAGGGGAAAGAGCATGCCCTGTGTGTCGG...TACACCTGAGCTAAATATAAATATTGCGTTGTATCTCTGTGTGTGTCTGTATGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062148.9 |
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| CDS-3UTR GCA 90 bp | ACATACAGACACACACAGAGATACAACGCAATATTTATATTTAGCTCAGGTGTAATGCTCTTTCCCCTCTaGCATGACCGCCACGATGGT | + |
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Preference number: 4 (lower is better) Translates to: TYRHTQRYNAIFIFSSGVMLFPL*HDRHDG Trigger: ACCATCGTGGCGGTCATGGCAGAGGGGAAAGAGCAT...TACACCTGAGCTAAATATAAATATTGCGTTGTATCTCTGTGTGTGTCTGTATGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062148.9 |
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| CDS-3UTR CCA 90 bp | ACATACAGACACACACAGAGATACAACGCAATATTTATATTTAGCTCAGGTGTACCACGGCTCGATACCTaGAAACTGCTCAGTCAGTTG | + |
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Preference number: 4 (lower is better) Translates to: TYRHTQRYNAIFIFSSGVPRLDT*KLLSQL Trigger: CAACTGACTGAGCAGTTTCCAGGTATCGAGCCGTGG...TACACCTGAGCTAAATATAAATATTGCGTTGTATCTCTGTGTGTGTCTGTATGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062148.9 |
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| CDS-3UTR GCA 90 bp | ACATACAGACACACACAGAGATACAACGCAATATTTATATTTAGCTCAGGTGTACACGATGGTATCTACTaGAGCAGTGTAGAGCTTCGC | + |
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Preference number: 4 (lower is better) Translates to: TYRHTQRYNAIFIFSSGVHDGIY*SSVELR Trigger: GCGAAGCTCTACACTGCTGCAGTAGATACCATCGTG...TACACCTGAGCTAAATATAAATATTGCGTTGTATCTCTGTGTGTGTCTGTATGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062148.9 |
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| CDS-3UTR TCA 90 bp | ACATACAGACACACACAGAGATACAACGCAATATTTATATTTAGCTCAGGTGTATGCCGATCCCCTTGTTaGTTTTCTCAATGTCTGCTG | + |
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Preference number: 4 (lower is better) Translates to: TYRHTQRYNAIFIFSSGVCRSPC*FSQCLL Trigger: CAGCAGACATTGAGAAAATCAACAAGGGGATCGGCA...TACACCTGAGCTAAATATAAATATTGCGTTGTATCTCTGTGTGTGTCTGTATGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062148.9 |
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| CDS-3UTR GCA 90 bp | ACATACAGACACACACAGAGATACAACGCAATATTTATATTTAGCTCAGGTGTACGGGCACATGATATTTaGACCACTGAGCACAAATTT | + |
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Preference number: 4 (lower is better) Translates to: TYRHTQRYNAIFIFSSGVRAHDI*TTEHKF Trigger: AAATTTGTGCTCAGTGGTGCAAATATCATGTGCCCG...TACACCTGAGCTAAATATAAATATTGCGTTGTATCTCTGTGTGTGTCTGTATGT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062148.9 |
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| CDS-3UTR TCA 90 bp | ACATACAGACACACACAGAGATACAACGCAATATTTATATTTAGCTCAGGTGTAATAAACGGGTATTTGTaGAGTAGTCTTAGCGTTGGA | + |
|
Preference number: 4 (lower is better) Translates to: TYRHTQRYNAIFIFSSGVINGYL*SSLSVG Trigger: TCCAACGCTAAGACTACTTCACAAATACCCGTTTAT...TACACCTGAGCTAAATATAAATATTGCGTTGTATCTCTGTGTGTGTCTGTATGT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062148.9 |
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| CDS-3UTR CCA 90 bp | ACATACAGACACACACAGAGATACAACGCAATATTTATATTTAGCTCAGGTGTAAACTGCTCAGTCAGTTaGCTCTTAATACCCTTAATA | + |
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Preference number: 4 (lower is better) Translates to: TYRHTQRYNAIFIFSSGVNCSVS*LLIPLI Trigger: TATTAAGGGTATTAAGAGCCAACTGACTGAGCAGTT...TACACCTGAGCTAAATATAAATATTGCGTTGTATCTCTGTGTGTGTCTGTATGT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062148.9 |
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| CDS-3UTR CCA 90 bp | ACATACAGACACACACAGAGATACAACGCAATATTTATATTTAGCTCAGGTGTAATTTCCATGTGTTCATaGCATCTCACTATTTTGACG | + |
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Preference number: 4 (lower is better) Translates to: TYRHTQRYNAIFIFSSGVISMCS*HLTILT Trigger: CGTCAAAATAGTGAGATGCCATGAACACATGGAAAT...TACACCTGAGCTAAATATAAATATTGCGTTGTATCTCTGTGTGTGTCTGTATGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062148.9 |
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| CDS-3UTR CAA 90 bp | ACATACAGACACACACAGAGATACAACGCAATATTTATATTTAGCTCAGGTGTACCACTGAGCACAAATTaGATGGCTCCTTTGTCGACC | + |
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Preference number: 5 (lower is better) Translates to: TYRHTQRYNAIFIFSSGVPLSTN*MAPLST Trigger: GGTCGACAAAGGAGCCATCAAATTTGTGCTCAGTGG...TACACCTGAGCTAAATATAAATATTGCGTTGTATCTCTGTGTGTGTCTGTATGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062148.9 |
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| CDS-3UTR CAA 90 bp | ACATACAGACACACACAGAGATACAACGCAATATTTATATTTAGCTCAGGTGTATTCAGTTGGATGCAGTaGGACACACTTTCCTTCTCG | + |
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Preference number: 5 (lower is better) Translates to: TYRHTQRYNAIFIFSSGVFSWMQ*DTLSFS Trigger: CGAGAAGGAAAGTGTGTCCAACTGCATCCAACTGAA...TACACCTGAGCTAAATATAAATATTGCGTTGTATCTCTGTGTGTGTCTGTATGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062148.9 |
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| CDS-3UTR CAA 90 bp | ACATACAGACACACACAGAGATACAACGCAATATTTATATTTAGCTCAGGTGTAATGCCGATCCCCTTGTaGATTTTCTCAATGTCTGCT | + |
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Preference number: 5 (lower is better) Translates to: TYRHTQRYNAIFIFSSGVMPIPL*IFSMSA Trigger: AGCAGACATTGAGAAAATCAACAAGGGGATCGGCAT...TACACCTGAGCTAAATATAAATATTGCGTTGTATCTCTGTGTGTGTCTGTATGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062148.9 |
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| CDS-3UTR CAA 90 bp | ACATACAGACACACACAGAGATACAACGCAATATTTATATTTAGCTCAGGTGTATCAATGCCGATCCCCTaGTTGATTTTCTCAATGTCT | + |
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Preference number: 5 (lower is better) Translates to: TYRHTQRYNAIFIFSSGVSMPIP*LIFSMS Trigger: AGACATTGAGAAAATCAACAAGGGGATCGGCATTGA...TACACCTGAGCTAAATATAAATATTGCGTTGTATCTCTGTGTGTGTCTGTATGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062148.9 |
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| CDS-3UTR CAA 90 bp | ACATACAGACACACACAGAGATACAACGCAATATTTATATTTAGCTCAGGTGTAAACAGTAATTCTCCGTaGACTGTAAGGATTTCCATG | + |
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Preference number: 5 (lower is better) Translates to: TYRHTQRYNAIFIFSSGVNSNSP*TVRISM Trigger: CATGGAAATCCTTACAGTCAACGGAGAATTACTGTT...TACACCTGAGCTAAATATAAATATTGCGTTGTATCTCTGTGTGTGTCTGTATGT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062148.9 |
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| CDS-3UTR CAA 90 bp | ACATACAGACACACACAGAGATACAACGCAATATTTATATTTAGCTCAGGTGTAGAAGTAGTCTTAGCGTaGGATAAAAAGGTCCTTTTC | + |
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Preference number: 5 (lower is better) Translates to: TYRHTQRYNAIFIFSSGVEVVLA*DKKVLF Trigger: GAAAAGGACCTTTTTATCCAACGCTAAGACTACTTC...TACACCTGAGCTAAATATAAATATTGCGTTGTATCTCTGTGTGTGTCTGTATGT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062148.9 |
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| CDS TCA 72 bp | CTCCGACACACAGGGCATGCTCTTTCCCCTCTGCCATaGCCGCCACGATGGTATCTACTGCAGCAGTGTAGA | + |
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Preference number: 6 (lower is better) Translates to: LRHTGHALSPLP*PPRWYLLQQCR Trigger: TCTACACTGCTGCAGTAGATACCATCGTGGCGGTCATGGCAGAGGGGAAAGAGCATGCCCTGTGTGTCGGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062148.9 |
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