Pregenerated sensors for MCRIP2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025732Ensembl transcript IDs: ENSMUST00000026828.7, ENSMUST00000235806.2, ENSMUST00000236479.2, ENSMUST00000237080.2
Found 37 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGTGGTGAGGGGTCGCCGGCCGTTTACTCGATTGAATACAAGTCTTaGCCCAGAACTACAGTAGGAGGTGGGAGTCCTGGGCTGCACCTG | + |
|
Preference number: 1 (lower is better) Translates to: GGEGSPAVYSIEYKS*PRTTVGGGSPGLHL Trigger: CAGGTGCAGCCCAGGACTCCCACCTCCTACTGTAGTTCTGGGCCAAGACTTGTATTCAATCGAGTAAACGGCCGGCGACCCCTCACCACC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000237080.2 |
||
| 3UTR-3UTR CCA 90 bp | GGCCGGTACCCAGCCAGGCCACAAGGTGGATCGGCGCACCATGGTCCTCTTCTGGCCAGCCCCAGGGGCTaGTCCCTGGGCACAGTGAGC | + |
|
Preference number: 2 (lower is better) Translates to: GRYPARPQGGSAHHGPLLASPRG*SLGTVS Trigger: GCTCACTGTGCCCAGGGACCAGCCCCTGGGGCTGGC...CAGAAGAGGACCATGGTGCGCCGATCCACCTTGTGGCCTGGCTGGGTACCGGCC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000026828.7 ENSMUST00000235806.2 ENSMUST00000237080.2 |
||
| 3UTR-3UTR CCA 90 bp | GGCCGGTACCCAGCCAGGCCACAAGGTGGATCGGCGCACCATGGTCCTCTTCTGCTGGCTCTGGCAGCTTaGGACAGCCAAGCCAAGGGA | + |
|
Preference number: 2 (lower is better) Translates to: GRYPARPQGGSAHHGPLLLALAA*DSQAKG Trigger: TCCCTTGGCTTGGCTGTCCCAAGCTGCCAGAGCCAG...CAGAAGAGGACCATGGTGCGCCGATCCACCTTGTGGCCTGGCTGGGTACCGGCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000026828.7 ENSMUST00000235806.2 ENSMUST00000237080.2 |
||
| 3UTR-3UTR GCA 90 bp | GAGGGATGGGGAGGTGGTGAGGGGTCGCCGGCCGTTTACTCGATTGAATACAAGGTCCTGGGCTGCACCTaGCACTCCGCCAGGCACTCG | + |
|
Preference number: 2 (lower is better) Translates to: EGWGGGEGSPAVYSIEYKVLGCT*HSARHS Trigger: CGAGTGCCTGGCGGAGTGGCAGGTGCAGCCCAGGAC...CTTGTATTCAATCGAGTAAACGGCCGGCGACCCCTCACCACCTCCCCATCCCTC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000237080.2 |
||
| 3UTR-3UTR CCA 90 bp | GGCCGGTACCCAGCCAGGCCACAAGGTGGATCGGCGCACCATGGTCCTCTTCTGGAGGTTAGACAGGTTTaGCCCCTGGCTCTGGCAGCT | + |
|
Preference number: 2 (lower is better) Translates to: GRYPARPQGGSAHHGPLLEVRQV*PLALAA Trigger: AGCTGCCAGAGCCAGGGGCCAAACCTGTCTAACCTC...CAGAAGAGGACCATGGTGCGCCGATCCACCTTGTGGCCTGGCTGGGTACCGGCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000026828.7 ENSMUST00000235806.2 ENSMUST00000237080.2 |
||
| 3UTR-3UTR CCA 90 bp | AGGTGTGGCCGGTACCCAGCCAGGCCACAAGGTGGATCGGCGCACCATGGTCCTGCAAAGGGTCCACTATaGCAACATTCCTTCCCGGAC | + |
|
Preference number: 2 (lower is better) Translates to: RCGRYPARPQGGSAHHGPAKGPL*QHSFPD Trigger: GTCCGGGAAGGAATGTTGCCATAGTGGACCCTTTGC...AGGACCATGGTGCGCCGATCCACCTTGTGGCCTGGCTGGGTACCGGCCACACCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026828.7 ENSMUST00000237080.2 |
||
| 3UTR-3UTR CCA 90 bp | ACATTCCTTCCCGGACAGCTGCTAGGAACAGTTGGTGATTTTAGCCAGAAACTGGCCTGCTCGCCTTCCTaGGCTCAGGTGCCCCACGCC | + |
|
Preference number: 2 (lower is better) Translates to: TFLPGQLLGTVGDFSQKLACSPS*AQVPHA Trigger: GGCGTGGGGCACCTGAGCCCAGGAAGGCGAGCAGGC...CAGTTTCTGGCTAAAATCACCAACTGTTCCTAGCAGCTGTCCGGGAAGGAATGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000237080.2 |
||
| 3UTR-3UTR TCA 90 bp | ACATTCCTTCCCGGACAGCTGCTAGGAACAGTTGGTGATTTTAGCCAGAAACTGGGGATGGGGAGGTGGTaGGGGGTCGCCGGCCGTTTA | + |
|
Preference number: 2 (lower is better) Translates to: TFLPGQLLGTVGDFSQKLGMGRW*GVAGRL Trigger: TAAACGGCCGGCGACCCCTCACCACCTCCCCATCCC...CAGTTTCTGGCTAAAATCACCAACTGTTCCTAGCAGCTGTCCGGGAAGGAATGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000237080.2 |
||
| 3UTR-3UTR CCA 90 bp | CTTCCCGGACAGCTGCTAGGAACAGTTGGTGATTTTAGCCAGAAACTGCTGTGCAGCCAGGCCACAAGGTaGATCGGCGCACCATGGTCC | + |
|
Preference number: 2 (lower is better) Translates to: LPGQLLGTVGDFSQKLLCSQATR*IGAPWS Trigger: GGACCATGGTGCGCCGATCCACCTTGTGGCCTGGCT...GCACAGCAGTTTCTGGCTAAAATCACCAACTGTTCCTAGCAGCTGTCCGGGAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000237080.2 |
||
| 3UTR-3UTR CCA 90 bp | TCGAGGTCAATAGGTACAAAGTTCTGTAGCCGGGGATCAGGAGTGCTCTCCACACTGGCTCTGGCAGCTTaGGACAGCCAAGCCAAGGGA | + |
|
Preference number: 2 (lower is better) Translates to: SRSIGTKFCSRGSGVLSTLALAA*DSQAKG Trigger: TCCCTTGGCTTGGCTGTCCCAAGCTGCCAGAGCCAG...TGTGGAGAGCACTCCTGATCCCCGGCTACAGAACTTTGTACCTATTGACCTCGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000237080.2 |
||
| 3UTR-3UTR CCA 90 bp | ACATTCCTTCCCGGACAGCTGCTAGGAACAGTTGGTGATTTTAGCCAGAAACTGAACTACAGTAGGAGGTaGGAGTCCTGGGCTGCACCT | + |
|
Preference number: 2 (lower is better) Translates to: TFLPGQLLGTVGDFSQKLNYSRR*ESWAAP Trigger: AGGTGCAGCCCAGGACTCCCACCTCCTACTGTAGTT...CAGTTTCTGGCTAAAATCACCAACTGTTCCTAGCAGCTGTCCGGGAAGGAATGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000237080.2 |
||
| 3UTR CCA 72 bp | AGGCACTCGCGGTCCCGGCAGGCCTGCTCGCCTTCCTaGGCTCAGGTGCCCCACGCCGCTCTGGGTTCCTCC | + |
|
Preference number: 3 (lower is better) Translates to: RHSRSRQACSPS*AQVPHAALGSS Trigger: GGAGGAACCCAGAGCGGCGTGGGGCACCTGAGCCCAGGAAGGCGAGCAGGCCTGCCGGGACCGCGAGTGCCT 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000237080.2 |
||
| 3UTR CCA 72 bp | GGGTCGCCGGCCGTTTACTCGATTGAATACAAGTCTTaGCCCAGAACTACAGTAGGAGGTGGGAGTCCTGGG | + |
|
Preference number: 3 (lower is better) Translates to: GSPAVYSIEYKS*PRTTVGGGSPG Trigger: CCCAGGACTCCCACCTCCTACTGTAGTTCTGGGCCAAGACTTGTATTCAATCGAGTAAACGGCCGGCGACCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000237080.2 |
||
| CDS-3UTR GCA 90 bp | ACTCGCGGTCCCGGCAGGCCTGCTCGCCTTCCTGGGCTCAGGTGCCCCACGCCGGGGTCCCTGAGTCTGTaGCGAGGGCTGCAGGTGCGC | + |
|
Preference number: 4 (lower is better) Translates to: TRGPGRPARLPGLRCPTPGSLSL*RGLQVR Trigger: GCGCACCTGCAGCCCTCGGCACAGACTCAGGGACCC...CGGCGTGGGGCACCTGAGCCCAGGAAGGCGAGCAGGCCTGCCGGGACCGCGAGT 73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000237080.2 |
||
| CDS-3UTR TCA 90 bp | GGTGTGGCCGGTACCCAGCCAGGCCACAAGGTGGATCGGCGCACCATGGTCCTCGGGATGGGGAGGTGGTaGGGGGTCGCCGGCCGTTTA | + |
|
Preference number: 4 (lower is better) Translates to: GVAGTQPGHKVDRRTMVLGMGRW*GVAGRL Trigger: TAAACGGCCGGCGACCCCTCACCACCTCCCCATCCC...GAGGACCATGGTGCGCCGATCCACCTTGTGGCCTGGCTGGGTACCGGCCACACC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000026828.7 ENSMUST00000235806.2 |
||
| CDS-3UTR TCA 90 bp | AGGTGTGGCCGGTACCCAGCCAGGCCACAAGGTGGATCGGCGCACCATGGTCCTGGGATGGGGAGGTGGTaGGGGGTCGCCGGCCGTTTA | + |
|
Preference number: 4 (lower is better) Translates to: RCGRYPARPQGGSAHHGPGMGRW*GVAGRL Trigger: TAAACGGCCGGCGACCCCTCACCACCTCCCCATCCC...AGGACCATGGTGCGCCGATCCACCTTGTGGCCTGGCTGGGTACCGGCCACACCT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000026828.7 ENSMUST00000235806.2 |
||
| CDS-3UTR GCA 90 bp | GCCGGTACCCAGCCAGGCCACAAGGTGGATCGGCGCACCATGGTCCTCTTCTGGGCTGTGTGGGACCTGTaGGGCGCTGCGCGACCAGCT | + |
|
Preference number: 4 (lower is better) Translates to: AGTQPGHKVDRRTMVLFWAVWDL*GAARPA Trigger: AGCTGGTCGCGCAGCGCCGCACAGGTCCCACACAGC...CCAGAAGAGGACCATGGTGCGCCGATCCACCTTGTGGCCTGGCTGGGTACCGGC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000026828.7 ENSMUST00000235806.2 ENSMUST00000237080.2 |
||
| CDS-3UTR GCA 90 bp | AGGTGTGGCCGGTACCCAGCCAGGCCACAAGGTGGATCGGCGCACCATGGTCCTGCTGTGTGGGACCTGTaGGGCGCTGCGCGACCAGCT | + |
|
Preference number: 4 (lower is better) Translates to: RCGRYPARPQGGSAHHGPAVWDL*GAARPA Trigger: AGCTGGTCGCGCAGCGCCGCACAGGTCCCACACAGC...AGGACCATGGTGCGCCGATCCACCTTGTGGCCTGGCTGGGTACCGGCCACACCT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000026828.7 ENSMUST00000235806.2 ENSMUST00000237080.2 |
||
| CDS-3UTR GCA 90 bp | GTGGCCGGTACCCAGCCAGGCCACAAGGTGGATCGGCGCACCATGGTCCTCTTCGGGTCCCTGAGTCTGTaGCGAGGGCTGCAGGTGCGC | + |
|
Preference number: 4 (lower is better) Translates to: VAGTQPGHKVDRRTMVLFGSLSL*RGLQVR Trigger: GCGCACCTGCAGCCCTCGGCACAGACTCAGGGACCC...GAAGAGGACCATGGTGCGCCGATCCACCTTGTGGCCTGGCTGGGTACCGGCCAC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000026828.7 ENSMUST00000235806.2 ENSMUST00000237080.2 |
||
| CDS-3UTR CCA 90 bp | GCCGGTACCCAGCCAGGCCACAAGGTGGATCGGCGCACCATGGTCCTCTTCTGGGGTCCCCTCGAGGGATaGGGAGGTGGTGAGGGGTCG | + |
|
Preference number: 4 (lower is better) Translates to: AGTQPGHKVDRRTMVLFWGPLEG*GGGEGS Trigger: CGACCCCTCACCACCTCCCCATCCCTCGAGGGGACC...CCAGAAGAGGACCATGGTGCGCCGATCCACCTTGTGGCCTGGCTGGGTACCGGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000026828.7 ENSMUST00000235806.2 |
||
| CDS-3UTR CCA 90 bp | AGGTGTGGCCGGTACCCAGCCAGGCCACAAGGTGGATCGGCGCACCATGGTCCTGGTCCCCTCGAGGGATaGGGAGGTGGTGAGGGGTCG | + |
|
Preference number: 4 (lower is better) Translates to: RCGRYPARPQGGSAHHGPGPLEG*GGGEGS Trigger: CGACCCCTCACCACCTCCCCATCCCTCGAGGGGACC...AGGACCATGGTGCGCCGATCCACCTTGTGGCCTGGCTGGGTACCGGCCACACCT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026828.7 ENSMUST00000235806.2 |
||
| CDS-3UTR GCA 90 bp | GGTGTGGCCGGTACCCAGCCAGGCCACAAGGTGGATCGGCGCACCATGGTCCTCGGAGCTCGCCAAGCCTaGTCTCCACCTGCTGCTGTG | + |
|
Preference number: 4 (lower is better) Translates to: GVAGTQPGHKVDRRTMVLGARQA*SPPAAV Trigger: CACAGCAGCAGGTGGAGAGCAGGCTTGGCGAGCTCC...GAGGACCATGGTGCGCCGATCCACCTTGTGGCCTGGCTGGGTACCGGCCACACC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000026828.7 ENSMUST00000235806.2 ENSMUST00000237080.2 |
||
| CDS-3UTR GCA 90 bp | GCCGGTACCCAGCCAGGCCACAAGGTGGATCGGCGCACCATGGTCCTCTTCTGGGGAGCTCGCCAAGCCTaGTCTCCACCTGCTGCTGTG | + |
|
Preference number: 4 (lower is better) Translates to: AGTQPGHKVDRRTMVLFWGARQA*SPPAAV Trigger: CACAGCAGCAGGTGGAGAGCAGGCTTGGCGAGCTCC...CCAGAAGAGGACCATGGTGCGCCGATCCACCTTGTGGCCTGGCTGGGTACCGGC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000026828.7 ENSMUST00000235806.2 ENSMUST00000237080.2 |
||
| CDS-3UTR GCA 90 bp | TGGCCGGTACCCAGCCAGGCCACAAGGTGGATCGGCGCACCATGGTCCTCTTCTGGTGAGAGGGGCACTTaGAAGGGGCCAGGGTCCCTG | + |
|
Preference number: 4 (lower is better) Translates to: WPVPSQATRWIGAPWSSSGERGT*KGPGSL Trigger: CAGGGACCCTGGCCCCTTGCAAGTGCCCCTCTCACC...AGAAGAGGACCATGGTGCGCCGATCCACCTTGTGGCCTGGCTGGGTACCGGCCA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000237080.2 |
||
| CDS-3UTR GCA 90 bp | AGGTGTGGCCGGTACCCAGCCAGGCCACAAGGTGGATCGGCGCACCATGGTCCTTCTTGGCCCAGAACTTaGAAGGGGCCAGGGTCCCTG | + |
|
Preference number: 4 (lower is better) Translates to: RCGRYPARPQGGSAHHGPSWPRT*KGPGSL Trigger: CAGGGACCCTGGCCCCTTGCAAGTTCTGGGCCAAGA...AGGACCATGGTGCGCCGATCCACCTTGTGGCCTGGCTGGGTACCGGCCACACCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026828.7 ENSMUST00000235806.2 |
||
| CDS-3UTR GCA 90 bp | GCCGGTACCCAGCCAGGCCACAAGGTGGATCGGCGCACCATGGTCCTCTTCTGGTCTTGGCCCAGAACTTaGAAGGGGCCAGGGTCCCTG | + |
|
Preference number: 4 (lower is better) Translates to: AGTQPGHKVDRRTMVLFWSWPRT*KGPGSL Trigger: CAGGGACCCTGGCCCCTTGCAAGTTCTGGGCCAAGA...CCAGAAGAGGACCATGGTGCGCCGATCCACCTTGTGGCCTGGCTGGGTACCGGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026828.7 ENSMUST00000235806.2 |
||
| CDS-3UTR GCA 90 bp | GGTGTGGCCGGTACCCAGCCAGGCCACAAGGTGGATCGGCGCACCATGGTCCTCAGTTGTCGCTCTACCTaGTGCCAGGCTTCGGACACA | + |
|
Preference number: 4 (lower is better) Translates to: GVAGTQPGHKVDRRTMVLSCRST*CQASDT Trigger: TGTGTCCGAAGCCTGGCAGCAGGTAGAGCGACAACT...GAGGACCATGGTGCGCCGATCCACCTTGTGGCCTGGCTGGGTACCGGCCACACC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026828.7 ENSMUST00000235806.2 |
||
| CDS-3UTR GCA 90 bp | GGTGTGGCCGGTACCCAGCCAGGCCACAAGGTGGATCGGCGCACCATGGTCCTCTGTCGCTCTACCTGCTaGCAGGCTTCGGACACAAAT | + |
|
Preference number: 4 (lower is better) Translates to: GVAGTQPGHKVDRRTMVLCRSTC*QASDTN Trigger: ATTTGTGTCCGAAGCCTGGCAGCAGGTAGAGCGACA...GAGGACCATGGTGCGCCGATCCACCTTGTGGCCTGGCTGGGTACCGGCCACACC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026828.7 ENSMUST00000235806.2 |
||
| CDS-3UTR GCA 90 bp | AGGTGTGGCCGGTACCCAGCCAGGCCACAAGGTGGATCGGCGCACCATGGTCCTAGCCAGAAACTGCTGTaGCCACCACTCATCGAGGTC | + |
|
Preference number: 4 (lower is better) Translates to: RCGRYPARPQGGSAHHGPSQKLL*PPLIEV Trigger: GACCTCGATGAGTGGTGGGCACAGCAGTTTCTGGCT...AGGACCATGGTGCGCCGATCCACCTTGTGGCCTGGCTGGGTACCGGCCACACCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026828.7 |
||
| CDS-3UTR GCA 90 bp | GAGGGATGGGGAGGTGGTGAGGGGTCGCCGGCCGTTTACTCGATTGAATACAAGGGAGCTCGCCAAGCCTaGTCTCCACCTGCTGCTGTG | + |
|
Preference number: 4 (lower is better) Translates to: EGWGGGEGSPAVYSIEYKGARQA*SPPAAV Trigger: CACAGCAGCAGGTGGAGAGCAGGCTTGGCGAGCTCC...CTTGTATTCAATCGAGTAAACGGCCGGCGACCCCTCACCACCTCCCCATCCCTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000237080.2 |
||
| CDS-3UTR GCA 90 bp | TGGCCGGTACCCAGCCAGGCCACAAGGTGGATCGGCGCACCATGGTCCTCTTCTAGTTGTCGCTCTACCTaGTGCCAGGCTTCGGACACA | + |
|
Preference number: 4 (lower is better) Translates to: WPVPSQATRWIGAPWSSSSCRST*CQASDT Trigger: TGTGTCCGAAGCCTGGCAGCAGGTAGAGCGACAACT...AGAAGAGGACCATGGTGCGCCGATCCACCTTGTGGCCTGGCTGGGTACCGGCCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026828.7 ENSMUST00000235806.2 |
||
| CDS-3UTR GCA 90 bp | TGGCCGGTACCCAGCCAGGCCACAAGGTGGATCGGCGCACCATGGTCCTCTTCTTGTCGCTCTACCTGCTaGCAGGCTTCGGACACAAAT | + |
|
Preference number: 4 (lower is better) Translates to: WPVPSQATRWIGAPWSSSCRSTC*QASDTN Trigger: ATTTGTGTCCGAAGCCTGGCAGCAGGTAGAGCGACA...AGAAGAGGACCATGGTGCGCCGATCCACCTTGTGGCCTGGCTGGGTACCGGCCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026828.7 ENSMUST00000235806.2 |
||
| CDS-3UTR CCA 90 bp | GGTGTGGCCGGTACCCAGCCAGGCCACAAGGTGGATCGGCGCACCATGGTCCTCATTGAATACAAGTCTTaGCCCAGAACTTGCAAGGGG | + |
|
Preference number: 4 (lower is better) Translates to: GVAGTQPGHKVDRRTMVLIEYKS*PRTCKG Trigger: CCCCTTGCAAGTTCTGGGCCAAGACTTGTATTCAAT...GAGGACCATGGTGCGCCGATCCACCTTGTGGCCTGGCTGGGTACCGGCCACACC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026828.7 ENSMUST00000235806.2 |
||
| CDS-3UTR CCA 90 bp | GTGGCCGGTACCCAGCCAGGCCACAAGGTGGATCGGCGCACCATGGTCCTCTTCATTGAATACAAGTCTTaGCCCAGAACTTGCAAGGGG | + |
|
Preference number: 4 (lower is better) Translates to: VAGTQPGHKVDRRTMVLFIEYKS*PRTCKG Trigger: CCCCTTGCAAGTTCTGGGCCAAGACTTGTATTCAAT...GAAGAGGACCATGGTGCGCCGATCCACCTTGTGGCCTGGCTGGGTACCGGCCAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026828.7 ENSMUST00000235806.2 |
||
| CDS CCA 90 bp | GGTGGTGAGGGGTCGCCGGCCGTTTACTCGATTGAATACAAGTCTTaGCCCAGAACTTGCAAGGGGCCAGGGTCCCTGAGTCTGTGCCGA | + |
|
Preference number: 5 (lower is better) Translates to: GGEGSPAVYSIEYKS*PRTCKGPGSLSLCR Trigger: TCGGCACAGACTCAGGGACCCTGGCCCCTTGCAAGTTCTGGGCCAAGACTTGTATTCAATCGAGTAAACGGCCGGCGACCCCTCACCACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000026828.7 ENSMUST00000235806.2 ENSMUST00000236479.2 |
||
| CDS GCA 72 bp | CTTCCCGGACAGCTGTCTGTAGCCGGGGATCAGGAGTaGTCTCCACATACTGCACAGGCCGTGGGCCACTCT | + |
|
Preference number: 6 (lower is better) Translates to: LPGQLSVAGDQE*SPHTAQAVGHS Trigger: AGAGTGGCCCACGGCCTGTGCAGTATGTGGAGAGCACTCCTGATCCCCGGCTACAGACAGCTGTCCGGGAAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236479.2 |
||
| CDS GCA 72 bp | TTCCTTCCCGGACAGTCTGTAGCCGGGGATCAGGAGTaGTCTCCACATACTGCACAGGCCGTGGGCCACTCT | + |
|
Preference number: 6 (lower is better) Translates to: FLPGQSVAGDQE*SPHTAQAVGHS Trigger: AGAGTGGCCCACGGCCTGTGCAGTATGTGGAGAGCACTCCTGATCCCCGGCTACAGACTGTCCGGGAAGGAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235806.2 |
||