RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MCRIP1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000061111

Ensembl transcript IDs: ENSMUST00000034913.5

Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AGTGACAGGGGCAACTTGAGACCCTGGAGAGGAAAGGAAGGGCCCTaGTCATCAATCCTGCTGGCTCTGGGATCACGGCCTGCTAGAGCA +
Preference number: 1 (lower is better)
Translates to: SDRGNLRPWRGKEGP*SSILLALGSRPARA
Trigger: TGCTCTAGCAGGCCGTGATCCCAGAGCCAGCAGGATTGATGACCAGGGCCCTTCCTTTCCTCTCCAGGGTCTCAAGTTGCCCCTGTCACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034913.5
3UTR GCA 90 bp CAGGGCAGAAGAAGAGCAAGTCTCCATGGAGAGAGCCACACTGGATaGAGGTGGGACTGCACATGTCCTACTTTCTGGTCATTTCAAGGT +
Preference number: 1 (lower is better)
Translates to: QGRRRASLHGESHTG*RWDCTCPTFWSFQG
Trigger: ACCTTGAAATGACCAGAAAGTAGGACATGTGCAGTCCCACCTGCATCCAGTGTGGCTCTCTCCATGGAGACTTGCTCTTCTTCTGCCCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034913.5
3UTR CCA 90 bp TGTCCAGGGCAGAAGAAGAGCAAGTCTCCATGGAGAGAGCCACACTaGATGCAGGTGGGACTGCACATGTCCTACTTTCTGGTCATTTCA +
Preference number: 1 (lower is better)
Translates to: CPGQKKSKSPWREPH*MQVGLHMSYFLVIS
Trigger: TGAAATGACCAGAAAGTAGGACATGTGCAGTCCCACCTGCATCCAGTGTGGCTCTCTCCATGGAGACTTGCTCTTCTTCTGCCCTGGACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034913.5
3UTR CCA 90 bp AGAAGAAGAGCAAGTCTCCATGGAGAGAGCCACACTGGATGCAGGTaGGACTGCACATGTCCTACTTTCTGGTCATTTCAAGGTTCCAAC +
Preference number: 1 (lower is better)
Translates to: RRRASLHGESHTGCR*DCTCPTFWSFQGSN
Trigger: GTTGGAACCTTGAAATGACCAGAAAGTAGGACATGTGCAGTCCCACCTGCATCCAGTGTGGCTCTCTCCATGGAGACTTGCTCTTCTTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034913.5
3UTR-3UTR CCA 90 bp AGTGACAGGGGCAACTTGAGACCCTGGAGAGGAAAGGAAGGGCCCTGGTCATCAGTGCACCTGAGCTTCTaGAGGCCAGGGGAGGGCGCC +
Preference number: 2 (lower is better)
Translates to: SDRGNLRPWRGKEGPWSSVHLSF*RPGEGA
Trigger: GGCGCCCTCCCCTGGCCTCCAGAAGCTCAGGTGCAC...TGATGACCAGGGCCCTTCCTTTCCTCTCCAGGGTCTCAAGTTGCCCCTGTCACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034913.5
3UTR CAA 90 bp GCTGTGACCACAACAGTGTCACAGGTACCAGGACACAAGGCCTGGTaGCCCTCAGAGAGCCAGCACTGTCCTAGGCTCAGAGCTGATTCG +
Preference number: 2 (lower is better)
Translates to: AVTTTVSQVPGHKAW*PSESQHCPRLRADS
Trigger: CGAATCAGCTCTGAGCCTAGGACAGTGCTGGCTCTCTGAGGGCAACCAGGCCTTGTGTCCTGGTACCTGTGACACTGTTGTGGTCACAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034913.5
3UTR-3UTR CCA 90 bp GTGACCACAACAGTGTCACAGGTACCAGGACACAAGGCCTGGTTGCCCTCAGAGCAATCCTGCTGGCTCTaGGATCACGGCCTGCTAGAG +
Preference number: 2 (lower is better)
Translates to: VTTTVSQVPGHKAWLPSEQSCWL*DHGLLE
Trigger: CTCTAGCAGGCCGTGATCCCAGAGCCAGCAGGATTG...CTCTGAGGGCAACCAGGCCTTGTGTCCTGGTACCTGTGACACTGTTGTGGTCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034913.5
3UTR-3UTR CCA 90 bp ACTGCTGTGACCACAACAGTGTCACAGGTACCAGGACACAAGGCCTGGTTGCCCGGCAACTTGAGACCCTaGAGAGGAAAGGAAGGGCCC +
Preference number: 2 (lower is better)
Translates to: TAVTTTVSQVPGHKAWLPGNLRP*RGKEGP
Trigger: GGGCCCTTCCTTTCCTCTCCAGGGTCTCAAGTTGCC...GGGCAACCAGGCCTTGTGTCCTGGTACCTGTGACACTGTTGTGGTCACAGCAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034913.5
3UTR-3UTR CCA 90 bp CAAGGAAAGGTCAGGATGGACAGTGGGGGTGGAAGCGGGAGCTCCCCACATGTCAAGAGCAAGTCTCCATaGAGAGAGCCACACTGGATG +
Preference number: 2 (lower is better)
Translates to: QGKVRMDSGGGSGSSPHVKSKSP*REPHWM
Trigger: CATCCAGTGTGGCTCTCTCCATGGAGACTTGCTCTT...GACATGTGGGGAGCTCCCGCTTCCACCCCCACTGTCCATCCTGACCTTTCCTTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034913.5
3UTR-3UTR CCA 90 bp CCACATGTCCAGGGCAGAAGAAGAGCAAGTCTCCATGGAGAGAGCCACACTGGAGGAAAGGAAGGGCCCTaGTCATCAATCCTGCTGGCT +
Preference number: 2 (lower is better)
Translates to: PHVQGRRRASLHGESHTGGKEGP*SSILLA
Trigger: AGCCAGCAGGATTGATGACCAGGGCCCTTCCTTTCC...TCCAGTGTGGCTCTCTCCATGGAGACTTGCTCTTCTTCTGCCCTGGACATGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034913.5
3UTR-3UTR CCA 90 bp CAAGGAAAGGTCAGGATGGACAGTGGGGGTGGAAGCGGGAGCTCCCCACATGTCACATGTCCTACTTTCTaGTCATTTCAAGGTTCCAAC +
Preference number: 2 (lower is better)
Translates to: QGKVRMDSGGGSGSSPHVTCPTF*SFQGSN
Trigger: GTTGGAACCTTGAAATGACCAGAAAGTAGGACATGT...GACATGTGGGGAGCTCCCGCTTCCACCCCCACTGTCCATCCTGACCTTTCCTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034913.5
3UTR-3UTR CCA 90 bp TATTCACAGACCCTCAGTCTCCAAAGCTACAGACACTTGGATTCAAGAGGGCACTACCCAAGATGCAGCTaGCCAGGGGAAAAGGACAGG +
Preference number: 2 (lower is better)
Translates to: YSQTLSLQSYRHLDSRGHYPRCS*PGEKDR
Trigger: CCTGTCCTTTTCCCCTGGCCAGCTGCATCTTGGGTA...GTGCCCTCTTGAATCCAAGTGTCTGTAGCTTTGGAGACTGAGGGTCTGTGAATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034913.5
3UTR GCA 72 bp CCTGGAGAGGAAAGGAAGGGCCCTGGTCATCAATCCTaGTGGCTCTGGGATCACGGCCTGCTAGAGCACACT +
Preference number: 3 (lower is better)
Translates to: PGEERKGPGHQS*WLWDHGLLEHT
Trigger: AGTGTGCTCTAGCAGGCCGTGATCCCAGAGCCAGCAGGATTGATGACCAGGGCCCTTCCTTTCCTCTCCAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034913.5
3UTR CCA 72 bp GGCAACTTGAGACCCTGGAGAGGAAAGGAAGGGCCCTaGTCATCAATCCTGCTGGCTCTGGGATCACGGCCT +
Preference number: 3 (lower is better)
Translates to: GNLRPWRGKEGP*SSILLALGSRP
Trigger: AGGCCGTGATCCCAGAGCCAGCAGGATTGATGACCAGGGCCCTTCCTTTCCTCTCCAGGGTCTCAAGTTGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034913.5
3UTR-3UTR CAA 90 bp TGGGGGTGGAAGCGGGAGCTCCCCACATGTCCAGGGCAGAAGAAGAGCAAGTCTAGTGACAGGGGCAACTaGAGACCCTGGAGAGGAAAG +
Preference number: 3 (lower is better)
Translates to: WGWKRELPTCPGQKKSKSSDRGN*RPWRGK
Trigger: CTTTCCTCTCCAGGGTCTCAAGTTGCCCCTGTCACT...AGACTTGCTCTTCTTCTGCCCTGGACATGTGGGGAGCTCCCGCTTCCACCCCCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000034913.5
3UTR GCA 72 bp CAACAGTGTCACAGGTACCAGGACACAAGGCCTGGTTaGCCTCAGAGAGCCAGCACTGTCCTAGGCTCAGAG +
Preference number: 3 (lower is better)
Translates to: QQCHRYQDTRPG*PQRASTVLGSE
Trigger: CTCTGAGCCTAGGACAGTGCTGGCTCTCTGAGGGCAACCAGGCCTTGTGTCCTGGTACCTGTGACACTGTTG
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034913.5
3UTR CCA 72 bp GGAGAGGAAAGGAAGGGCCCTGGTCATCAATCCTGCTaGCTCTGGGATCACGGCCTGCTAGAGCACACTCTT +
Preference number: 3 (lower is better)
Translates to: GEERKGPGHQSC*LWDHGLLEHTL
Trigger: AAGAGTGTGCTCTAGCAGGCCGTGATCCCAGAGCCAGCAGGATTGATGACCAGGGCCCTTCCTTTCCTCTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034913.5
3UTR CCA 72 bp CCCACATGTCCAGGGCAGAAGAAGAGCAAGTCTCCATaGAGAGAGCCACACTGGATGCAGGTGGGACTGCAC +
Preference number: 3 (lower is better)
Translates to: PTCPGQKKSKSP*REPHWMQVGLH
Trigger: GTGCAGTCCCACCTGCATCCAGTGTGGCTCTCTCCATGGAGACTTGCTCTTCTTCTGCCCTGGACATGTGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034913.5
3UTR TCA 72 bp GGGTCAGCCTTAATGCCCTGTCCAAGGGCACTGCTGTaGCCACAACAGTGTCACAGGTACCAGGACACAAGG +
Preference number: 3 (lower is better)
Translates to: GSALMPCPRALL*PQQCHRYQDTR
Trigger: CCTTGTGTCCTGGTACCTGTGACACTGTTGTGGTCACAGCAGTGCCCTTGGACAGGGCATTAAGGCTGACCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034913.5
3UTR GCA 72 bp CTCCATGGAGAGAGCCACACTGGATGCAGGTGGGACTaGACATGTCCTACTTTCTGGTCATTTCAAGGTTCC +
Preference number: 3 (lower is better)
Translates to: LHGESHTGCRWD*TCPTFWSFQGS
Trigger: GGAACCTTGAAATGACCAGAAAGTAGGACATGTGCAGTCCCACCTGCATCCAGTGTGGCTCTCTCCATGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034913.5
3UTR GCA 72 bp AGAAGAGCAAGTCTCCATGGAGAGAGCCACACTGGATaGAGGTGGGACTGCACATGTCCTACTTTCTGGTCA +
Preference number: 3 (lower is better)
Translates to: RRASLHGESHTG*RWDCTCPTFWS
Trigger: TGACCAGAAAGTAGGACATGTGCAGTCCCACCTGCATCCAGTGTGGCTCTCTCCATGGAGACTTGCTCTTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034913.5
3UTR CCA 72 bp CAGAAGAAGAGCAAGTCTCCATGGAGAGAGCCACACTaGATGCAGGTGGGACTGCACATGTCCTACTTTCTG +
Preference number: 3 (lower is better)
Translates to: QKKSKSPWREPH*MQVGLHMSYFL
Trigger: CAGAAAGTAGGACATGTGCAGTCCCACCTGCATCCAGTGTGGCTCTCTCCATGGAGACTTGCTCTTCTTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034913.5
3UTR CCA 72 bp GCAAGTCTCCATGGAGAGAGCCACACTGGATGCAGGTaGGACTGCACATGTCCTACTTTCTGGTCATTTCAA +
Preference number: 3 (lower is better)
Translates to: ASLHGESHTGCR*DCTCPTFWSFQ
Trigger: TTGAAATGACCAGAAAGTAGGACATGTGCAGTCCCACCTGCATCCAGTGTGGCTCTCTCCATGGAGACTTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034913.5
3UTR CCA 72 bp ACTGGATGCAGGTGGGACTGCACATGTCCTACTTTCTaGTCATTTCAAGGTTCCAACAGCCGAAGAAACAGA +
Preference number: 3 (lower is better)
Translates to: TGCRWDCTCPTF*SFQGSNSRRNR
Trigger: TCTGTTTCTTCGGCTGTTGGAACCTTGAAATGACCAGAAAGTAGGACATGTGCAGTCCCACCTGCATCCAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034913.5
CDS-3UTR TCA 90 bp GAAGCGGGAGCTCCCCACATGTCCAGGGCAGAAGAAGAGCAAGTCTCCATGGAGTCAGGTCGATGGGCTTaGAGGTCTTCAGGCTGGGGT +
Preference number: 4 (lower is better)
Translates to: EAGAPHMSRAEEEQVSMESGRWA*RSSGWG
Trigger: ACCCCAGCCTGAAGACCTTCAAGCCCATCGACCTGA...CTCCATGGAGACTTGCTCTTCTTCTGCCCTGGACATGTGGGGAGCTCCCGCTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034913.5
CDS-3UTR GCA 90 bp GATAGGTCGGGCCAGGTGCTACCCAAGATGCAGCTGGCCAGGGGAAAAGGACAGTGGGAGAGCGGGGACTaGTATTCCTCTTGCCGTTGT +
Preference number: 4 (lower is better)
Translates to: DRSGQVLPKMQLARGKGQWESGD*YSSCRC
Trigger: ACAACGGCAAGAGGAATAGCAGTCCCCGCTCTCCCA...CTGTCCTTTTCCCCTGGCCAGCTGCATCTTGGGTAGCACCTGGCCCGACCTATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000034913.5
CDS-3UTR GCA 90 bp AAGTCTCCATGGAGAGAGCCACACTGGATGCAGGTGGGACTGCACATGTCCTACCACTGGACAGCTGGCTaGGCAGGTCTCGCTCAACAC +
Preference number: 4 (lower is better)
Translates to: KSPWREPHWMQVGLHMSYHWTAG*AGLAQH
Trigger: GTGTTGAGCGAGACCTGCGCAGCCAGCTGTCCAGTG...GTAGGACATGTGCAGTCCCACCTGCATCCAGTGTGGCTCTCTCCATGGAGACTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034913.5
CDS-3UTR GCA 90 bp ACTGCTGTGACCACAACAGTGTCACAGGTACCAGGACACAAGGCCTGGTTGCCCGACTTCTTGGCATCCTaGGTGTTCCGGCGCTTCAGG +
Preference number: 4 (lower is better)
Translates to: TAVTTTVSQVPGHKAWLPDFLAS*VFRRFR
Trigger: CCTGAAGCGCCGGAACACGCAGGATGCCAAGAAGTC...GGGCAACCAGGCCTTGTGTCCTGGTACCTGTGACACTGTTGTGGTCACAGCAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034913.5
CDS-3UTR TCA 90 bp CCACATGTCCAGGGCAGAAGAAGAGCAAGTCTCCATGGAGAGAGCCACACTGGACTTCGTGTGCCGGTGTaGAAATCTCACTGCTGTTGG +
Preference number: 4 (lower is better)
Translates to: PHVQGRRRASLHGESHTGLRVPV*KSHCCW
Trigger: CCAACAGCAGTGAGATTTTCACACCGGCACACGAAG...TCCAGTGTGGCTCTCTCCATGGAGACTTGCTCTTCTTCTGCCCTGGACATGTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034913.5
CDS-3UTR CCA 90 bp AGTGACAGGGGCAACTTGAGACCCTGGAGAGGAAAGGAAGGGCCCTGGTCATCACGTTGTAGACAACTCTaGAGACAGGAGAGCTGGTCA +
Preference number: 4 (lower is better)
Translates to: SDRGNLRPWRGKEGPWSSRCRQL*RQESWS
Trigger: TGACCAGCTCTCCTGTCTCCAGAGTTGTCTACAACG...TGATGACCAGGGCCCTTCCTTTCCTCTCCAGGGTCTCAAGTTGCCCCTGTCACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034913.5
CDS CCA 90 bp TGGGGACTTTCTCCACATACTCCTCCACTAGGCACCGCTCACCACTaGACAGCTGGCTGCGCAGGTCTCGCTCAACACCCTGCCAGGCTT +
Preference number: 5 (lower is better)
Translates to: WGLSPHTPPLGTAHH*TAGCAGLAQHPARL
Trigger: AAGCCTGGCAGGGTGTTGAGCGAGACCTGCGCAGCCAGCTGTCCAGTGGTGAGCGGTGCCTAGTGGAGGAGTATGTGGAGAAAGTCCCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034913.5
CDS-3UTR CAA 90 bp GAAGCGGGAGCTCCCCACATGTCCAGGGCAGAAGAAGAGCAAGTCTCCATGGAGGTCTTCAGGCTGGGGTaGGGGACTTTCTCCACATAC +
Preference number: 5 (lower is better)
Translates to: EAGAPHMSRAEEEQVSMEVFRLG*GTFSTY
Trigger: GTATGTGGAGAAAGTCCCCAACCCCAGCCTGAAGAC...CTCCATGGAGACTTGCTCTTCTTCTGCCCTGGACATGTGGGGAGCTCCCGCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000034913.5
CDS-3UTR CAA 90 bp GTCTCCATGGAGAGAGCCACACTGGATGCAGGTGGGACTGCACATGTCCTACTTCTCAGGTCGATGGGCTaGAAGGTCTTCAGGCTGGGG +
Preference number: 5 (lower is better)
Translates to: VSMERATLDAGGTAHVLLLRSMG*KVFRLG
Trigger: CCCCAGCCTGAAGACCTTCAAGCCCATCGACCTGAG...AAGTAGGACATGTGCAGTCCCACCTGCATCCAGTGTGGCTCTCTCCATGGAGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034913.5
CDS-3UTR CAA 90 bp CTGACCTTAAGTAGCCAGGAAGGAGAGGGGCAAGGCATGGCAGGTAACAGCAGAAAAATCTCACTGCTGTaGGTGGGAGAGCGGGGACTG +
Preference number: 5 (lower is better)
Translates to: LTLSSQEGEGQGMAGNSRKISLL*VGERGL
Trigger: CAGTCCCCGCTCTCCCACCAACAGCAGTGAGATTTT...TCTGCTGTTACCTGCCATGCCTTGCCCCTCTCCTTCCTGGCTACTTAAGGTCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000034913.5
CDS GCA 72 bp CCTCCACTAGGCACCGCTCACCACTGGACAGCTGGCTaGGCAGGTCTCGCTCAACACCCTGCCAGGCTTCAT +
Preference number: 6 (lower is better)
Translates to: PPLGTAHHWTAG*AGLAQHPARLH
Trigger: ATGAAGCCTGGCAGGGTGTTGAGCGAGACCTGCGCAGCCAGCTGTCCAGTGGTGAGCGGTGCCTAGTGGAGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034913.5
CDS CCA 72 bp TCTCCACATACTCCTCCACTAGGCACCGCTCACCACTaGACAGCTGGCTGCGCAGGTCTCGCTCAACACCCT +
Preference number: 6 (lower is better)
Translates to: SPHTPPLGTAHH*TAGCAGLAQHP
Trigger: AGGGTGTTGAGCGAGACCTGCGCAGCCAGCTGTCCAGTGGTGAGCGGTGCCTAGTGGAGGAGTATGTGGAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034913.5
CDS GCA 72 bp TGCTGTTGGTGGGAGAGCGGGGACTGCTATTCCTCTTaGCGTTGTAGACAACTCTGGAGACAGGAGAGCTGG +
Preference number: 6 (lower is better)
Translates to: CCWWESGDCYSS*RCRQLWRQESW
Trigger: CCAGCTCTCCTGTCTCCAGAGTTGTCTACAACGGCAAGAGGAATAGCAGTCCCCGCTCTCCCACCAACAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034913.5
CDS CAA 72 bp CTCAGGTCGATGGGCTTGAAGGTCTTCAGGCTGGGGTaGGGGACTTTCTCCACATACTCCTCCACTAGGCAC +
Preference number: 6 (lower is better)
Translates to: LRSMGLKVFRLG*GTFSTYSSTRH
Trigger: GTGCCTAGTGGAGGAGTATGTGGAGAAAGTCCCCAACCCCAGCCTGAAGACCTTCAAGCCCATCGACCTGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034913.5
CDS CAA 72 bp TTCTCTTCGTGTGCCGGTGTGAAAATCTCACTGCTGTaGGTGGGAGAGCGGGGACTGCTATTCCTCTTGCCG +
Preference number: 6 (lower is better)
Translates to: FSSCAGVKISLL*VGERGLLFLLP
Trigger: CGGCAAGAGGAATAGCAGTCCCCGCTCTCCCACCAACAGCAGTGAGATTTTCACACCGGCACACGAAGAGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034913.5