Pregenerated sensors for MCPT8 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022157Ensembl transcript IDs: ENSMUST00000015594.9, ENSMUST00000225107.2
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ACCCGAGGAAGTGTCCCAGTACACAAGCGACAACTGACAATGCCCTaGACCACCCCATTACACACAAAGGGTCCGCCAGAGTCACCCTTA | + |
|
Preference number: 1 (lower is better) Translates to: TRGSVPVHKRQLTMP*TTPLHTKGPPESPL Trigger: TAAGGGTGACTCTGGCGGACCCTTTGTGTGTAATGGGGTGGTCCAGGGCATTGTCAGTTGTCGCTTGTGTACTGGGACACTTCCTCGGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225107.2 |
||
| 3UTR GCA 90 bp | TGTCAGACAAAGTGCAATTGGCCAACTTTCCCCAACCTGCCACTGTaGACACCTGCCCAGGTTTCACCCAATCCTTGCTCTTTGGAAGGG | + |
|
Preference number: 1 (lower is better) Translates to: CQTKCNWPTFPNLPL*TPAQVSPNPCSLEG Trigger: CCCTTCCAAAGAGCAAGGATTGGGTGAAACCTGGGCAGGTGTGCACAGTGGCAGGTTGGGGAAAGTTGGCCAATTGCACTTTGTCTGACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225107.2 |
||
| 3UTR CCA 90 bp | TGCCACTGTGCACACCTGCCCAGGTTTCACCCAATCCTTGCTCTTTaGAAGGGCAATAGTATCCACAGCACTGTTGAGTTGAGCTTTGCG | + |
|
Preference number: 1 (lower is better) Translates to: CHCAHLPRFHPILAL*KGNSIHSTVELSFA Trigger: CGCAAAGCTCAACTCAACAGTGCTGTGGATACTATTGCCCTTCCAAAGAGCAAGGATTGGGTGAAACCTGGGCAGGTGTGCACAGTGGCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225107.2 |
||
| 3UTR GCA 90 bp | AAAGTGCAATTGGCCAACTTTCCCCAACCTGCCACTGTGCACACCTaGCCAGGTTTCACCCAATCCTTGCTCTTTGGAAGGGCAATAGTA | + |
|
Preference number: 1 (lower is better) Translates to: KVQLANFPQPATVHT*PGFTQSLLFGRAIV Trigger: TACTATTGCCCTTCCAAAGAGCAAGGATTGGGTGAAACCTGGGCAGGTGTGCACAGTGGCAGGTTGGGGAAAGTTGGCCAATTGCACTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225107.2 |
||
| 3UTR GCA 90 bp | TTGAAGTGTGTCAGACAAAGTGCAATTGGCCAACTTTCCCCAACCTaGCACTGTGCACACCTGCCCAGGTTTCACCCAATCCTTGCTCTT | + |
|
Preference number: 1 (lower is better) Translates to: LKCVRQSAIGQLSPT*HCAHLPRFHPILAL Trigger: AAGAGCAAGGATTGGGTGAAACCTGGGCAGGTGTGCACAGTGGCAGGTTGGGGAAAGTTGGCCAATTGCACTTTGTCTGACACACTTCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225107.2 |
||
| 3UTR-3UTR GCA 90 bp | TGTCCCAGTACACAAGCGACAACTGACAATGCCCTGGACCACCCCATTACACACCCCAACCTGCCACTGTaGACACCTGCCCAGGTTTCA | + |
|
Preference number: 2 (lower is better) Translates to: CPSTQATTDNALDHPITHPNLPL*TPAQVS Trigger: TGAAACCTGGGCAGGTGTGCACAGTGGCAGGTTGGG...GTGTGTAATGGGGTGGTCCAGGGCATTGTCAGTTGTCGCTTGTGTACTGGGACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000225107.2 |
||
| 3UTR-3UTR GCA 90 bp | GGATGGAGTCGTTGTAGGTTTGGGACATGCTGCGACACTTCTGGCCCTTTTGAACAACTTTCCCCAACCTaGCACTGTGCACACCTGCCC | + |
|
Preference number: 2 (lower is better) Translates to: GWSRCRFGTCCDTSGPFEQLSPT*HCAHLP Trigger: GGGCAGGTGTGCACAGTGGCAGGTTGGGGAAAGTTG...TTCAAAAGGGCCAGAAGTGTCGCAGCATGTCCCAAACCTACAACGACTCCATCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000225107.2 |
||
| 3UTR-3UTR CCA 90 bp | GACCACCCCATTACACACAAAGGGTCCGCCAGAGTCACCCTTACCAGTAGCCTTCCAATCCTTGCTCTTTaGAAGGGCAATAGTATCCAC | + |
|
Preference number: 2 (lower is better) Translates to: DHPITHKGSARVTLTSSLPILAL*KGNSIH Trigger: GTGGATACTATTGCCCTTCCAAAGAGCAAGGATTGG...AAGGCTACTGGTAAGGGTGACTCTGGCGGACCCTTTGTGTGTAATGGGGTGGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225107.2 |
||
| 3UTR-3UTR TCA 90 bp | GCGACAACTGACAATGCCCTGGACCACCCCATTACACACAAAGGGTCCGCCAGATCTAGATTCACTTCTTaGAGTGTGTCAGACAAAGTG | + |
|
Preference number: 2 (lower is better) Translates to: ATTDNALDHPITHKGSARSRFTS*SVSDKV Trigger: CACTTTGTCTGACACACTTCAAGAAGTGAATCTAGA...TCTGGCGGACCCTTTGTGTGTAATGGGGTGGTCCAGGGCATTGTCAGTTGTCGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225107.2 |
||
| 3UTR-3UTR CCA 90 bp | ACTTTCCCCAACCTGCCACTGTGCACACCTGCCCAGGTTTCACCCAATCCTTGCGGATCTGTTGTTATTTaGTTAGTCCCAGGCATCAAA | + |
|
Preference number: 2 (lower is better) Translates to: TFPNLPLCTPAQVSPNPCGSVVI*LVPGIK Trigger: TTTGATGCCTGGGACTAACCAAATAACAACAGATCC...GCAAGGATTGGGTGAAACCTGGGCAGGTGTGCACAGTGGCAGGTTGGGGAAAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225107.2 |
||
| 3UTR-3UTR CCA 90 bp | CCAACTTTCCCCAACCTGCCACTGTGCACACCTGCCCAGGTTTCACCCAATCCTCTGACAGGAATGAGCTaGGTGTTTTTCTTTTTCTTG | + |
|
Preference number: 2 (lower is better) Translates to: PTFPNLPLCTPAQVSPNPLTGMS*VFFFFL Trigger: CAAGAAAAAGAAAAACACCCAGCTCATTCCTGTCAG...AGGATTGGGTGAAACCTGGGCAGGTGTGCACAGTGGCAGGTTGGGGAAAGTTGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000225107.2 |
||
| 3UTR-3UTR CCA 90 bp | GTACACAAGCGACAACTGACAATGCCCTGGACCACCCCATTACACACAAAGGGTCAGACAAAGTGCAATTaGCCAACTTTCCCCAACCTG | + |
|
Preference number: 2 (lower is better) Translates to: VHKRQLTMPWTTPLHTKGQTKCN*PTFPNL Trigger: CAGGTTGGGGAAAGTTGGCCAATTGCACTTTGTCTG...ACCCTTTGTGTGTAATGGGGTGGTCCAGGGCATTGTCAGTTGTCGCTTGTGTAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000225107.2 |
||
| 3UTR GCA 72 bp | TTGGCCAACTTTCCCCAACCTGCCACTGTGCACACCTaGCCAGGTTTCACCCAATCCTTGCTCTTTGGAAGG | + |
|
Preference number: 3 (lower is better) Translates to: LANFPQPATVHT*PGFTQSLLFGR Trigger: CCTTCCAAAGAGCAAGGATTGGGTGAAACCTGGGCAGGTGTGCACAGTGGCAGGTTGGGGAAAGTTGGCCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225107.2 |
||
| 3UTR CCA 72 bp | AGTGTCCCAGTACACAAGCGACAACTGACAATGCCCTaGACCACCCCATTACACACAAAGGGTCCGCCAGAG | + |
|
Preference number: 3 (lower is better) Translates to: SVPVHKRQLTMP*TTPLHTKGPPE Trigger: CTCTGGCGGACCCTTTGTGTGTAATGGGGTGGTCCAGGGCATTGTCAGTTGTCGCTTGTGTACTGGGACACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225107.2 |
||
| 3UTR GCA 72 bp | AAGTGCAATTGGCCAACTTTCCCCAACCTGCCACTGTaGACACCTGCCCAGGTTTCACCCAATCCTTGCTCT | + |
|
Preference number: 3 (lower is better) Translates to: KCNWPTFPNLPL*TPAQVSPNPCS Trigger: AGAGCAAGGATTGGGTGAAACCTGGGCAGGTGTGCACAGTGGCAGGTTGGGGAAAGTTGGCCAATTGCACTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225107.2 |
||
| 3UTR TCA 72 bp | ATACCCGAGGAAGTGTCCCAGTACACAAGCGACAACTaGCAATGCCCTGGACCACCCCATTACACACAAAGG | + |
|
Preference number: 3 (lower is better) Translates to: IPEEVSQYTSDN*QCPGPPHYTQR Trigger: CCTTTGTGTGTAATGGGGTGGTCCAGGGCATTGTCAGTTGTCGCTTGTGTACTGGGACACTTCCTCGGGTAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225107.2 |
||
| 3UTR-3UTR CAA 90 bp | AGAGCTGGATGGAGTCGTTGTAGGTTTGGGACATGCTGCGACACTTCTGGCCCTGGTTTCACCCAATCCTaGCTCTTTGGAAGGGCAATA | + |
|
Preference number: 3 (lower is better) Translates to: RAGWSRCRFGTCCDTSGPGFTQS*LFGRAI Trigger: TATTGCCCTTCCAAAGAGCAAGGATTGGGTGAAACC...AGGGCCAGAAGTGTCGCAGCATGTCCCAAACCTACAACGACTCCATCCAGCTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225107.2 |
||
| 3UTR-3UTR CAA 90 bp | TTCCCACACAGAGCTGGATGGAGTCGTTGTAGGTTTGGGACATGCTGCGACACTTCAGACAAAGTGCAATaGGCCAACTTTCCCCAACCT | + |
|
Preference number: 3 (lower is better) Translates to: FPHRAGWSRCRFGTCCDTSDKVQ*ANFPQP Trigger: AGGTTGGGGAAAGTTGGCCAATTGCACTTTGTCTGA...AGTGTCGCAGCATGTCCCAAACCTACAACGACTCCATCCAGCTCTGTGTGGGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225107.2 |
||
| 3UTR CCA 72 bp | GCACACCTGCCCAGGTTTCACCCAATCCTTGCTCTTTaGAAGGGCAATAGTATCCACAGCACTGTTGAGTTG | + |
|
Preference number: 3 (lower is better) Translates to: AHLPRFHPILAL*KGNSIHSTVEL Trigger: CAACTCAACAGTGCTGTGGATACTATTGCCCTTCCAAAGAGCAAGGATTGGGTGAAACCTGGGCAGGTGTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225107.2 |
||
| 3UTR CCA 72 bp | CCTTATTCTCACTGGGATTTCCCACACAGAGCTGGATaGAGTCGTTGTAGGTTTGGGACATGCTGCGACACT | + |
|
Preference number: 3 (lower is better) Translates to: PYSHWDFPHRAG*SRCRFGTCCDT Trigger: AGTGTCGCAGCATGTCCCAAACCTACAACGACTCCATCCAGCTCTGTGTGGGAAATCCCAGTGAGAATAAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225107.2 |
||
| 3UTR GCA 72 bp | AGAGCTGGATGGAGTCGTTGTAGGTTTGGGACATGCTaGGACACTTCTGGCCCTTTTGAACTTCTAGATTCA | + |
|
Preference number: 3 (lower is better) Translates to: RAGWSRCRFGTC*DTSGPFELLDS Trigger: TGAATCTAGAAGTTCAAAAGGGCCAGAAGTGTCGCAGCATGTCCCAAACCTACAACGACTCCATCCAGCTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225107.2 |
||
| 3UTR-3UTR CAA 90 bp | GGATGGAGTCGTTGTAGGTTTGGGACATGCTGCGACACTTCTGGCCCTTTTGAAAGGATCTGTTGTTATTaGGTTAGTCCCAGGCATCAA | + |
|
Preference number: 3 (lower is better) Translates to: GWSRCRFGTCCDTSGPFERICCY*VSPRHQ Trigger: TTGATGCCTGGGACTAACCAAATAACAACAGATCCT...TTCAAAAGGGCCAGAAGTGTCGCAGCATGTCCCAAACCTACAACGACTCCATCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225107.2 |
||
| CDS-3UTR TCA 90 bp | TGGCCAACTTTCCCCAACCTGCCACTGTGCACACCTGCCCAGGTTTCACCCAATCCCCTCCTTCAGCGTTaGCTGGCAGGGCAGCCACCA | + |
|
Preference number: 4 (lower is better) Translates to: WPTFPNLPLCTPAQVSPNPLLQR*LAGQPP Trigger: TGGTGGCTGCCCTGCCAGTCAACGCTGAAGGAGGGG...ATTGGGTGAAACCTGGGCAGGTGTGCACAGTGGCAGGTTGGGGAAAGTTGGCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000225107.2 |
||
| CDS-3UTR TCA 90 bp | CTCAGACAACCATACCCCAGGATGCTGGACACTGGCCCAGACACAGGTTTTGTGCCCCTCCTTCAGCGTTaGCTGGCAGGGCAGCCACCA | + |
|
Preference number: 4 (lower is better) Translates to: LRQPYPRMLDTGPDTGFVPLLQR*LAGQPP Trigger: TGGTGGCTGCCCTGCCAGTCAACGCTGAAGGAGGGG...CACAAAACCTGTGTCTGGGCCAGTGTCCAGCATCCTGGGGTATGGTTGTCTGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000015594.9 |
||
| CDS-3UTR CCA 90 bp | GACCACCCCATTACACACAAAGGGTCCGCCAGAGTCACCCTTACCAGTAGCCTTTCCTTCAGCGTTGACTaGCAGGGCAGCCACCAGGAG | + |
|
Preference number: 4 (lower is better) Translates to: DHPITHKGSARVTLTSSLSFSVD*QGSHQE Trigger: CTCCTGGTGGCTGCCCTGCCAGTCAACGCTGAAGGA...AAGGCTACTGGTAAGGGTGACTCTGGCGGACCCTTTGTGTGTAATGGGGTGGTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225107.2 |
||
| CDS-3UTR CCA 90 bp | TCAGACAACCATACCCCAGGATGCTGGACACTGGCCCAGACACAGGTTTTGTGTTCCTTCAGCGTTGACTaGCAGGGCAGCCACCAGGAG | + |
|
Preference number: 4 (lower is better) Translates to: SDNHTPGCWTLAQTQVLCSFSVD*QGSHQE Trigger: CTCCTGGTGGCTGCCCTGCCAGTCAACGCTGAAGGA...ACACAAAACCTGTGTCTGGGCCAGTGTCCAGCATCCTGGGGTATGGTTGTCTGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000015594.9 |
||
| CDS-3UTR GCA 90 bp | CAGACAACCATACCCCAGGATGCTGGACACTGGCCCAGACACAGGTTTTGTGTTCAACTTTCCCCAACCTaGCACTGTGCACACCTGCCC | + |
|
Preference number: 4 (lower is better) Translates to: QTTIPQDAGHWPRHRFCVQLSPT*HCAHLP Trigger: GGGCAGGTGTGCACAGTGGCAGGTTGGGGAAAGTTG...AACACAAAACCTGTGTCTGGGCCAGTGTCCAGCATCCTGGGGTATGGTTGTCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000015594.9 |
||
| CDS-3UTR GCA 90 bp | TCTTTATTAAGGCTCAGACAACCATACCCCAGGATGCTGGACACTGGCCCAGACCCCAACCTGCCACTGTaGACACCTGCCCAGGTTTCA | + |
|
Preference number: 4 (lower is better) Translates to: SLLRLRQPYPRMLDTGPDPNLPL*TPAQVS Trigger: TGAAACCTGGGCAGGTGTGCACAGTGGCAGGTTGGG...GTCTGGGCCAGTGTCCAGCATCCTGGGGTATGGTTGTCTGAGCCTTAATAAAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000015594.9 |
||
| 3UTR CAA 72 bp | GCCACTGTGCACACCTGCCCAGGTTTCACCCAATCCTaGCTCTTTGGAAGGGCAATAGTATCCACAGCACTG | + |
|
Preference number: 4 (lower is better) Translates to: ATVHTCPGFTQS*LFGRAIVSTAL Trigger: CAGTGCTGTGGATACTATTGCCCTTCCAAAGAGCAAGGATTGGGTGAAACCTGGGCAGGTGTGCACAGTGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225107.2 |
||
| CDS-3UTR TCA 90 bp | AGAGCTGGATGGAGTCGTTGTAGGTTTGGGACATGCTGCGACACTTCTGGCCCTACTCTGTACCCCATATaGTTTCCCCTCCTTCAGCGT | + |
|
Preference number: 4 (lower is better) Translates to: RAGWSRCRFGTCCDTSGPTLYPI*FPLLQR Trigger: ACGCTGAAGGAGGGGAAATCATATGGGGTACAGAGT...AGGGCCAGAAGTGTCGCAGCATGTCCCAAACCTACAACGACTCCATCCAGCTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000225107.2 |
||
| CDS-3UTR GCA 90 bp | CTCAGACAACCATACCCCAGGATGCTGGACACTGGCCCAGACACAGGTTTTGTGAGGTTTGGGACATGCTaGGACACTTCTGGCCCTTTT | + |
|
Preference number: 4 (lower is better) Translates to: LRQPYPRMLDTGPDTGFVRFGTC*DTSGPF Trigger: AAAAGGGCCAGAAGTGTCGCAGCATGTCCCAAACCT...CACAAAACCTGTGTCTGGGCCAGTGTCCAGCATCCTGGGGTATGGTTGTCTGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000015594.9 |
||
| CDS-3UTR TCA 90 bp | CAGACAACCATACCCCAGGATGCTGGACACTGGCCCAGACACAGGTTTTGTGTTACTCTGTACCCCATATaGTTTCCCCTCCTTCAGCGT | + |
|
Preference number: 4 (lower is better) Translates to: QTTIPQDAGHWPRHRFCVTLYPI*FPLLQR Trigger: ACGCTGAAGGAGGGGAAATCATATGGGGTACAGAGT...AACACAAAACCTGTGTCTGGGCCAGTGTCCAGCATCCTGGGGTATGGTTGTCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000015594.9 |
||
| CDS-3UTR TCA 90 bp | TTATTAAGGCTCAGACAACCATACCCCAGGATGCTGGACACTGGCCCAGACACAACAGCACTGTTGAGTTaGGCTTTGCGTTCCAGCTTC | + |
|
Preference number: 4 (lower is better) Translates to: LLRLRQPYPRMLDTGPDTTALLS*ALRSSF Trigger: GAAGCTGGAACGCAAAGCTCAACTCAACAGTGCTGT...TGTGTCTGGGCCAGTGTCCAGCATCCTGGGGTATGGTTGTCTGAGCCTTAATAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015594.9 |
||
| CDS-3UTR TCA 90 bp | AAGGCTCAGACAACCATACCCCAGGATGCTGGACACTGGCCCAGACACAGGTTTCACTTCTGGCCCTTTTaGACTTCTAGATTCACTTCT | + |
|
Preference number: 4 (lower is better) Translates to: KAQTTIPQDAGHWPRHRFHFWPF*TSRFTS Trigger: AGAAGTGAATCTAGAAGTTCAAAAGGGCCAGAAGTG...AAACCTGTGTCTGGGCCAGTGTCCAGCATCCTGGGGTATGGTTGTCTGAGCCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000015594.9 |
||
| CDS-3UTR CCA 90 bp | TTTATTAAGGCTCAGACAACCATACCCCAGGATGCTGGACACTGGCCCAGACACCAGACAAAGTGCAATTaGCCAACTTTCCCCAACCTG | + |
|
Preference number: 4 (lower is better) Translates to: FIKAQTTIPQDAGHWPRHQTKCN*PTFPNL Trigger: CAGGTTGGGGAAAGTTGGCCAATTGCACTTTGTCTG...GTGTCTGGGCCAGTGTCCAGCATCCTGGGGTATGGTTGTCTGAGCCTTAATAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000015594.9 |
||
| CDS-3UTR CCA 90 bp | CTCAGACAACCATACCCCAGGATGCTGGACACTGGCCCAGACACAGGTTTTGTGCTGACAGGAATGAGCTaGGTGTTTTTCTTTTTCTTG | + |
|
Preference number: 4 (lower is better) Translates to: LRQPYPRMLDTGPDTGFVLTGMS*VFFFFL Trigger: CAAGAAAAAGAAAAACACCCAGCTCATTCCTGTCAG...CACAAAACCTGTGTCTGGGCCAGTGTCCAGCATCCTGGGGTATGGTTGTCTGAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000015594.9 |
||
| CDS-3UTR CCA 90 bp | TTCTTTATTAAGGCTCAGACAACCATACCCCAGGATGCTGGACACTGGCCCAGACCAATCCTTGCTCTTTaGAAGGGCAATAGTATCCAC | + |
|
Preference number: 4 (lower is better) Translates to: FFIKAQTTIPQDAGHWPRPILAL*KGNSIH Trigger: GTGGATACTATTGCCCTTCCAAAGAGCAAGGATTGG...TCTGGGCCAGTGTCCAGCATCCTGGGGTATGGTTGTCTGAGCCTTAATAAAGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015594.9 |
||
| CDS-3UTR TCA 90 bp | GATTTCTTTATTAAGGCTCAGACAACCATACCCCAGGATGCTGGACACTGGCCCACTTTTCCATTACAGTaGGCTGCTGTCATTACGATG | + |
|
Preference number: 4 (lower is better) Translates to: DFFIKAQTTIPQDAGHWPTFPLQ*AAVITM Trigger: CATCGTAATGACAGCAGCTCACTGTAATGGAAAAGT...GGGCCAGTGTCCAGCATCCTGGGGTATGGTTGTCTGAGCCTTAATAAAGAAATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000015594.9 |
||
| CDS-3UTR TCA 90 bp | AGTCGTTGTAGGTTTGGGACATGCTGCGACACTTCTGGCCCTTTTGAACTTCTATACTTTCCATTACAGTaGGCTGCTGTCATTACGATG | + |
|
Preference number: 4 (lower is better) Translates to: SRCRFGTCCDTSGPFELLYFPLQ*AAVITM Trigger: CATCGTAATGACAGCAGCTCACTGTAATGGAAAGTA...TAGAAGTTCAAAAGGGCCAGAAGTGTCGCAGCATGTCCCAAACCTACAACGACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225107.2 |
||
| CDS-3UTR TCA 90 bp | TGCAGACAGATTTCTTTATTAAGGCTCAGACAACCATACCCCAGGATGCTGGACTCTAGATTCACTTCTTaGAGTGTGTCAGACAAAGTG | + |
|
Preference number: 4 (lower is better) Translates to: CRQISLLRLRQPYPRMLDSRFTS*SVSDKV Trigger: CACTTTGTCTGACACACTTCAAGAAGTGAATCTAGA...GTCCAGCATCCTGGGGTATGGTTGTCTGAGCCTTAATAAAGAAATCTGTCTGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015594.9 |
||
| CDS-3UTR CAA 90 bp | ACCACCCCATTACACACAAAGGGTCCGCCAGAGTCACCCTTACCAGTAGCCTTATCCCCTCCTTCAGCGTaGACTGGCAGGGCAGCCACC | + |
|
Preference number: 5 (lower is better) Translates to: TTPLHTKGPPESPLPVALSPPSA*TGRAAT Trigger: GGTGGCTGCCCTGCCAGTCAACGCTGAAGGAGGGGA...TAAGGCTACTGGTAAGGGTGACTCTGGCGGACCCTTTGTGTGTAATGGGGTGGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000225107.2 |
||
| CDS-3UTR CAA 90 bp | CTGCAGACAGATTTCTTTATTAAGGCTCAGACAACCATACCCCAGGATGCTGGATCCCCTCCTTCAGCGTaGACTGGCAGGGCAGCCACC | + |
|
Preference number: 5 (lower is better) Translates to: LQTDFFIKAQTTIPQDAGSPPSA*TGRAAT Trigger: GGTGGCTGCCCTGCCAGTCAACGCTGAAGGAGGGGA...TCCAGCATCCTGGGGTATGGTTGTCTGAGCCTTAATAAAGAAATCTGTCTGCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000015594.9 |
||
| CDS-3UTR CAA 90 bp | AGGCTCAGACAACCATACCCCAGGATGCTGGACACTGGCCCAGACACAGGTTTTGGTTTCACCCAATCCTaGCTCTTTGGAAGGGCAATA | + |
|
Preference number: 5 (lower is better) Translates to: RLRQPYPRMLDTGPDTGFGFTQS*LFGRAI Trigger: TATTGCCCTTCCAAAGAGCAAGGATTGGGTGAAACC...AAAACCTGTGTCTGGGCCAGTGTCCAGCATCCTGGGGTATGGTTGTCTGAGCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000015594.9 |
||
| CDS-3UTR CAA 90 bp | GCTCAGACAACCATACCCCAGGATGCTGGACACTGGCCCAGACACAGGTTTTGTTCAGACAAAGTGCAATaGGCCAACTTTCCCCAACCT | + |
|
Preference number: 5 (lower is better) Translates to: AQTTIPQDAGHWPRHRFCSDKVQ*ANFPQP Trigger: AGGTTGGGGAAAGTTGGCCAATTGCACTTTGTCTGA...ACAAAACCTGTGTCTGGGCCAGTGTCCAGCATCCTGGGGTATGGTTGTCTGAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000015594.9 |
||
| CDS TCA 90 bp | CATTACGATGTCTCTTGCCACCAGGAAACCACCACAGCGATAGACTaGTTTGCTGTCATTAAACCTTATGTATGCCATATAGGGCCGGGA | + |
|
Preference number: 5 (lower is better) Translates to: HYDVSCHQETTTAID*FAVIKPYVCHIGPG Trigger: TCCCGGCCCTATATGGCATACATAAGGTTTAATGACAGCAAATCAGTCTATCGCTGTGGTGGTTTCCTGGTGGCAAGAGACATCGTAATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015594.9 ENSMUST00000225107.2 |
||
| CDS CAA 72 bp | TTCCATTACAGTGAGCTGCTGTCATTACGATGTCTCTaGCCACCAGGAAACCACCACAGCGATAGACTGATT | + |
|
Preference number: 6 (lower is better) Translates to: FHYSELLSLRCL*PPGNHHSDRLI Trigger: AATCAGTCTATCGCTGTGGTGGTTTCCTGGTGGCAAGAGACATCGTAATGACAGCAGCTCACTGTAATGGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015594.9 ENSMUST00000225107.2 |
||
| CDS TCA 72 bp | GTCTCTTGCCACCAGGAAACCACCACAGCGATAGACTaGTTTGCTGTCATTAAACCTTATGTATGCCATATA | + |
|
Preference number: 6 (lower is better) Translates to: VSCHQETTTAID*FAVIKPYVCHI Trigger: TATATGGCATACATAAGGTTTAATGACAGCAAATCAGTCTATCGCTGTGGTGGTTTCCTGGTGGCAAGAGAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015594.9 ENSMUST00000225107.2 |
||