Pregenerated sensors for MCPT2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022226Ensembl transcript IDs: ENSMUST00000015576.6
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | ATTGAGATGCATCACAGAGAACAATCCATCATCACAGACATGTGCATCTTTGATATCTTGGGGACAGACTaGGGACAGGCTAGGGGCAGA | + |
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Preference number: 2 (lower is better) Translates to: IEMHHREQSIITDMCIFDILGTD*GQARGR Trigger: TCTGCCCCTAGCCTGTCCCCAGTCTGTCCCCAAGAT...ATCAAAGATGCACATGTCTGTGATGATGGATTGTTCTCTGTGATGCATCTCAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000015576.6 |
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| 3UTR TCA 72 bp | GACTGGGGACAGGCTAGGGGCAGACTTGATGCAGGATaGGAACAGGCTGGGATGAACTCAGAGGTACCAGAT | + |
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Preference number: 3 (lower is better) Translates to: DWGQARGRLDAG*EQAGMNSEVPD Trigger: ATCTGGTACCTCTGAGTTCATCCCAGCCTGTTCTCATCCTGCATCAAGTCTGCCCCTAGCCTGTCCCCAGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000015576.6 |
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| 3UTR TCA 72 bp | GGGGCAGACTTGATGCAGGATGAGAACAGGCTGGGATaGACTCAGAGGTACCAGATGAGCTTGATCTTGAAG | + |
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Preference number: 3 (lower is better) Translates to: GADLMQDENRLG*TQRYQMSLILK Trigger: CTTCAAGATCAAGCTCATCTGGTACCTCTGAGTTCATCCCAGCCTGTTCTCATCCTGCATCAAGTCTGCCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015576.6 |
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| CDS-3UTR TCA 90 bp | TCAGAGGTACCAGATGAGCTTGATCTTGAAGAGTCTGACTCAGGCTGGTTAGGCCAAATTGTGGGGCTATaGGAAACCCACCACACCTCT | + |
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Preference number: 4 (lower is better) Translates to: SEVPDELDLEESDSGWLGQIVGL*ETHHTS Trigger: AGAGGTGTGGTGGGTTTCTCATAGCCCCACAATTTG...GCCTAACCAGCCTGAGTCAGACTCTTCAAGATCAAGCTCATCTGGTACCTCTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015576.6 |
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| CDS-3UTR TCA 90 bp | GTACCAGATGAGCTTGATCTTGAAGAGTCTGACTCAGGCTGGTTAGGCTTTTCAAATAGGAGATTCGGGTaGAGACTGCAGGGGCCTTTG | + |
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Preference number: 4 (lower is better) Translates to: VPDELDLEESDSGWLGFSNRRFG*RLQGPL Trigger: CAAAGGCCCCTGCAGTCTTCACCCGAATCTCCTATT...TGAAAAGCCTAACCAGCCTGAGTCAGACTCTTCAAGATCAAGCTCATCTGGTAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000015576.6 |
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| CDS-3UTR GCA 90 bp | ATGAACTCAGAGGTACCAGATGAGCTTGATCTTGAAGAGTCTGACTCAGGCTGGTGTTGTGGGACTGCCTaGGCAAACCTGGAGTTGATA | + |
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Preference number: 4 (lower is better) Translates to: MNSEVPDELDLEESDSGWCCGTA*ANLELI Trigger: TATCAACTCCAGGTTTGCGCAGGCAGTCCCACAACA...CCAGCCTGAGTCAGACTCTTCAAGATCAAGCTCATCTGGTACCTCTGAGTTCAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015576.6 |
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| CDS-3UTR CCA 90 bp | TCAGAGGTACCAGATGAGCTTGATCTTGAAGAGTCTGACTCAGGCTGGTTAGGCAGTCATCACAAATTGTaGGGCTATGAGAAACCCACC | + |
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Preference number: 4 (lower is better) Translates to: SEVPDELDLEESDSGWLGSHHKL*GYEKPT Trigger: GGTGGGTTTCTCATAGCCCCACAATTTGTGATGACT...GCCTAACCAGCCTGAGTCAGACTCTTCAAGATCAAGCTCATCTGGTACCTCTGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015576.6 |
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| CDS-3UTR GCA 90 bp | TCAGAGGTACCAGATGAGCTTGATCTTGAAGAGTCTGACTCAGGCTGGTTAGGCTGCTTCATAAGAAGATaGAATACCATGGGCCACACT | + |
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Preference number: 4 (lower is better) Translates to: SEVPDELDLEESDSGWLGCFIRR*NTMGHT Trigger: AGTGTGGCCCATGGTATTGCATCTTCTTATGAAGCA...GCCTAACCAGCCTGAGTCAGACTCTTCAAGATCAAGCTCATCTGGTACCTCTGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015576.6 |
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| CDS-3UTR CCA 90 bp | CACAGAGAACAATCCATCATCACAGACATGTGCATCTTTGATATGATCTTGGGGGTAAGGACGGGAGTGTaGTTTAGCCTCAACACCACC | + |
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Preference number: 4 (lower is better) Translates to: HREQSIITDMCIFDMILGVRTGV*FSLNTT Trigger: GGTGGTGTTGAGGCTAAACCACACTCCCGTCCTTAC...CCCCAAGATCATATCAAAGATGCACATGTCTGTGATGATGGATTGTTCTCTGTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015576.6 |
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| CDS-3UTR TCA 90 bp | ATGAACTCAGAGGTACCAGATGAGCTTGATCTTGAAGAGTCTGACTCAGGCTGGAGAGGAACTAGGCAATaGAATTACATCCACATCAGA | + |
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Preference number: 4 (lower is better) Translates to: MNSEVPDELDLEESDSGWRGTRQ*NYIHIR Trigger: TCTGATGTGGATGTAATTTCATTGCCTAGTTCCTCT...CCAGCCTGAGTCAGACTCTTCAAGATCAAGCTCATCTGGTACCTCTGAGTTCAT 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015576.6 |
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| CDS-3UTR TCA 90 bp | ATGAACTCAGAGGTACCAGATGAGCTTGATCTTGAAGAGTCTGACTCAGGCTGGTTCTTGTTTATATTATaGGCTCCAAGGATGACACTG | + |
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Preference number: 4 (lower is better) Translates to: MNSEVPDELDLEESDSGWFLFIL*APRMTL Trigger: CAGTGTCATCCTTGGAGCTCATAATATAAACAAGAA...CCAGCCTGAGTCAGACTCTTCAAGATCAAGCTCATCTGGTACCTCTGAGTTCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015576.6 |
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| CDS-3UTR GCA 90 bp | ATTGAGATGCATCACAGAGAACAATCCATCATCACAGACATGTGCATCTTTGATGATTCGGGTGAAGACTaGAGGGGCCTTTGCTTCATA | + |
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Preference number: 4 (lower is better) Translates to: IEMHHREQSIITDMCIFDDSGED*RGLCFI Trigger: TATGAAGCAAAGGCCCCTGCAGTCTTCACCCGAATC...ATCAAAGATGCACATGTCTGTGATGATGGATTGTTCTCTGTGATGCATCTCAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015576.6 |
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| CDS GCA 90 bp | CCAGGGCAGGTAATAGGAGATTCGGGTGAAGACTGCAGGGGCCTTTaGTTCATAAGAAGATGCAATACCATGGGCCACACTATCACACAC | + |
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Preference number: 5 (lower is better) Translates to: PGQVIGDSGEDCRGL*FIRRCNTMGHTITH Trigger: GTGTGTGATAGTGTGGCCCATGGTATTGCATCTTCTTATGAAGCAAAGGCCCCTGCAGTCTTCACCCGAATCTCCTATTACCTGCCCTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015576.6 |
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| CDS CCA 90 bp | GTTCTTAGTGGTGAACTTCAGATAGGCCATGTAAGGACGGGAGTGTaGTTTAGCCTCAACACCACCAATAATCTCCTCAGCTCCAGCTCC | + |
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Preference number: 5 (lower is better) Translates to: VLSGELQIGHVRTGV*FSLNTTNNLLSSSS Trigger: GGAGCTGGAGCTGAGGAGATTATTGGTGGTGTTGAGGCTAAACCACACTCCCGTCCTTACATGGCCTATCTGAAGTTCACCACTAAGAAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015576.6 |
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| CDS-3UTR CAA 90 bp | TCAGAGGTACCAGATGAGCTTGATCTTGAAGAGTCTGACTCAGGCTGGTTAGGCAGACTGCAGGGGCCTTaGCTTCATAAGAAGATGCAA | + |
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Preference number: 5 (lower is better) Translates to: SEVPDELDLEESDSGWLGRLQGP*LHKKMQ Trigger: TTGCATCTTCTTATGAAGCAAAGGCCCCTGCAGTCT...GCCTAACCAGCCTGAGTCAGACTCTTCAAGATCAAGCTCATCTGGTACCTCTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015576.6 |
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| CDS GCA 90 bp | GACTTTATATATCCAGGGCAGGTAATAGGAGATTCGGGTGAAGACTaGAGGGGCCTTTGCTTCATAAGAAGATGCAATACCATGGGCCAC | + |
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Preference number: 5 (lower is better) Translates to: DFIYPGQVIGDSGED*RGLCFIRRCNTMGH Trigger: GTGGCCCATGGTATTGCATCTTCTTATGAAGCAAAGGCCCCTGCAGTCTTCACCCGAATCTCCTATTACCTGCCCTGGATATATAAAGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015576.6 |
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| CDS-3UTR CAA 90 bp | ATGAACTCAGAGGTACCAGATGAGCTTGATCTTGAAGAGTCTGACTCAGGCTGGAGCAGTCATCACAAATaGTGGGGCTATGAGAAACCC | + |
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Preference number: 5 (lower is better) Translates to: MNSEVPDELDLEESDSGWSSHHK*WGYEKP Trigger: GGGTTTCTCATAGCCCCACAATTTGTGATGACTGCT...CCAGCCTGAGTCAGACTCTTCAAGATCAAGCTCATCTGGTACCTCTGAGTTCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015576.6 |
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| CDS GCA 90 bp | GTCCCCCAGAATCTCCTTGTCCTATTGATTTTGATGTTGTGGGACTaGCTGCGCAAACCTGGAGTTGATAATCGTAATCACTGTGGTCTT | + |
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Preference number: 5 (lower is better) Translates to: VPQNLLVLLILMLWD*LRKPGVDNRNHCGL Trigger: AAGACCACAGTGATTACGATTATCAACTCCAGGTTTGCGCAGGCAGTCCCACAACATCAAAATCAATAGGACAAGGAGATTCTGGGGGAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000015576.6 |
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| CDS CCA 90 bp | ACTGATTTCACTTCCATTACAGTGTGCAGCAGTCATCACAAATTGTaGGGCTATGAGAAACCCACCACACCTCTCCTTCGAACCGTTCTT | + |
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Preference number: 5 (lower is better) Translates to: TDFTSITVCSSHHKL*GYEKPTTPLLRTVL Trigger: AAGAACGGTTCGAAGGAGAGGTGTGGTGGGTTTCTCATAGCCCCACAATTTGTGATGACTGCTGCACACTGTAATGGAAGTGAAATCAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015576.6 |
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| CDS CCA 90 bp | CTAGAGGTCCCCCAGAATCTCCTTGTCCTATTGATTTTGATGTTGTaGGACTGCCTGCGCAAACCTGGAGTTGATAATCGTAATCACTGT | + |
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Preference number: 5 (lower is better) Translates to: LEVPQNLLVLLILML*DCLRKPGVDNRNHC Trigger: ACAGTGATTACGATTATCAACTCCAGGTTTGCGCAGGCAGTCCCACAACATCAAAATCAATAGGACAAGGAGATTCTGGGGGACCTCTAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000015576.6 |
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| CDS GCA 90 bp | ATTATGAGCTCCAAGGATGACACTGATTTCACTTCCATTACAGTGTaGAGCAGTCATCACAAATTGTGGGGCTATGAGAAACCCACCACA | + |
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Preference number: 5 (lower is better) Translates to: IMSSKDDTDFTSITV*SSHHKLWGYEKPTT Trigger: TGTGGTGGGTTTCTCATAGCCCCACAATTTGTGATGACTGCTGCACACTGTAATGGAAGTGAAATCAGTGTCATCCTTGGAGCTCATAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015576.6 |
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| CDS-3UTR CAA 90 bp | CACAGAGAACAATCCATCATCACAGACATGTGCATCTTTGATATGATCTTGGGGCACATCTTCCCAGGCTaGATGAAGTCAGAGGAACTA | + |
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Preference number: 5 (lower is better) Translates to: HREQSIITDMCIFDMILGHIFPG*MKSEEL Trigger: TAGTTCCTCTGACTTCATCAAGCCTGGGAAGATGTG...CCCCAAGATCATATCAAAGATGCACATGTCTGTGATGATGGATTGTTCTCTGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015576.6 |
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| CDS TCA 90 bp | CCACATCAGAATTCAACTCTGCTTTCTTTTGTAGCTTCAGTAACATaGTGTCATAGAAACCCGAAAGGTACTGAAACTTTGGGTGAACAA | + |
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Preference number: 5 (lower is better) Translates to: PHQNSTLLSFVASVT*CHRNPKGTETLGEQ Trigger: TTGTTCACCCAAAGTTTCAGTACCTTTCGGGTTTCTATGACATCATGTTACTGAAGCTACAAAAGAAAGCAGAGTTGAATTCTGATGTGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015576.6 |
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| CDS-3UTR CAA 90 bp | ATTGAGATGCATCACAGAGAACAATCCATCATCACAGACATGTGCATCTTTGATAATCTCCTTGTCCTATaGATTTTGATGTTGTGGGAC | + |
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Preference number: 5 (lower is better) Translates to: IEMHHREQSIITDMCIFDNLLVL*ILMLWD Trigger: GTCCCACAACATCAAAATCAATAGGACAAGGAGATT...ATCAAAGATGCACATGTCTGTGATGATGGATTGTTCTCTGTGATGCATCTCAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015576.6 |
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| CDS TCA 90 bp | TCAGTTTTTATTATCTGCTGTGTGGGTTCGTTCTTGTTTATATTATaGGCTCCAAGGATGACACTGATTTCACTTCCATTACAGTGTGCA | + |
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Preference number: 5 (lower is better) Translates to: SVFIICCVGSFLFIL*APRMTLISLPLQCA Trigger: TGCACACTGTAATGGAAGTGAAATCAGTGTCATCCTTGGAGCTCATAATATAAACAAGAACGAACCCACACAGCAGATAATAAAAACTGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015576.6 |
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| CDS CCA 72 bp | GGTGAACTTCAGATAGGCCATGTAAGGACGGGAGTGTaGTTTAGCCTCAACACCACCAATAATCTCCTCAGC | + |
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Preference number: 6 (lower is better) Translates to: GELQIGHVRTGV*FSLNTTNNLLS Trigger: GCTGAGGAGATTATTGGTGGTGTTGAGGCTAAACCACACTCCCGTCCTTACATGGCCTATCTGAAGTTCACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015576.6 |
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| CDS CAA 72 bp | CTAGAGGTCCCCCAGAATCTCCTTGTCCTATTGATTTaGATGTTGTGGGACTGCCTGCGCAAACCTGGAGTT | + |
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Preference number: 6 (lower is better) Translates to: LEVPQNLLVLLI*MLWDCLRKPGV Trigger: AACTCCAGGTTTGCGCAGGCAGTCCCACAACATCAAAATCAATAGGACAAGGAGATTCTGGGGGACCTCTAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015576.6 |
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| CDS CAA 72 bp | CACACACTAGAGGTCCCCCAGAATCTCCTTGTCCTATaGATTTTGATGTTGTGGGACTGCCTGCGCAAACCT | + |
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Preference number: 6 (lower is better) Translates to: HTLEVPQNLLVL*ILMLWDCLRKP Trigger: AGGTTTGCGCAGGCAGTCCCACAACATCAAAATCAATAGGACAAGGAGATTCTGGGGGACCTCTAGTGTGTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000015576.6 |
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| CDS CAA 90 bp | CCACACTATCACACACTAGAGGTCCCCCAGAATCTCCTTGTCCTATaGATTTTGATGTTGTGGGACTGCCTGCGCAAACCTGGAGTTGAT | + |
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Preference number: 6 (lower is better) Translates to: PHYHTLEVPQNLLVL*ILMLWDCLRKPGVD Trigger: ATCAACTCCAGGTTTGCGCAGGCAGTCCCACAACATCAAAATCAATAGGACAAGGAGATTCTGGGGGACCTCTAGTGTGTGATAGTGTGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000015576.6 |
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| CDS GCA 72 bp | GTAATAGGAGATTCGGGTGAAGACTGCAGGGGCCTTTaGTTCATAAGAAGATGCAATACCATGGGCCACACT | + |
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Preference number: 6 (lower is better) Translates to: VIGDSGEDCRGL*FIRRCNTMGHT Trigger: AGTGTGGCCCATGGTATTGCATCTTCTTATGAAGCAAAGGCCCCTGCAGTCTTCACCCGAATCTCCTATTAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015576.6 |
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| CDS GCA 72 bp | TATCCAGGGCAGGTAATAGGAGATTCGGGTGAAGACTaGAGGGGCCTTTGCTTCATAAGAAGATGCAATACC | + |
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Preference number: 6 (lower is better) Translates to: YPGQVIGDSGED*RGLCFIRRCNT Trigger: GGTATTGCATCTTCTTATGAAGCAAAGGCCCCTGCAGTCTTCACCCGAATCTCCTATTACCTGCCCTGGATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015576.6 |
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| CDS CCA 72 bp | ACTTCCATTACAGTGTGCAGCAGTCATCACAAATTGTaGGGCTATGAGAAACCCACCACACCTCTCCTTCGA | + |
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Preference number: 6 (lower is better) Translates to: TSITVCSSHHKL*GYEKPTTPLLR Trigger: TCGAAGGAGAGGTGTGGTGGGTTTCTCATAGCCCCACAATTTGTGATGACTGCTGCACACTGTAATGGAAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015576.6 |
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| CDS CAA 90 bp | GACACTGATTTCACTTCCATTACAGTGTGCAGCAGTCATCACAAATaGTGGGGCTATGAGAAACCCACCACACCTCTCCTTCGAACCGTT | + |
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Preference number: 6 (lower is better) Translates to: DTDFTSITVCSSHHK*WGYEKPTTPLLRTV Trigger: AACGGTTCGAAGGAGAGGTGTGGTGGGTTTCTCATAGCCCCACAATTTGTGATGACTGCTGCACACTGTAATGGAAGTGAAATCAGTGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015576.6 |
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| CDS CAA 90 bp | ACACTAGAGGTCCCCCAGAATCTCCTTGTCCTATTGATTTTGATGTaGTGGGACTGCCTGCGCAAACCTGGAGTTGATAATCGTAATCAC | + |
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Preference number: 6 (lower is better) Translates to: TLEVPQNLLVLLILM*WDCLRKPGVDNRNH Trigger: GTGATTACGATTATCAACTCCAGGTTTGCGCAGGCAGTCCCACAACATCAAAATCAATAGGACAAGGAGATTCTGGGGGACCTCTAGTGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000015576.6 |
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| CDS CAA 90 bp | TATCACACACTAGAGGTCCCCCAGAATCTCCTTGTCCTATTGATTTaGATGTTGTGGGACTGCCTGCGCAAACCTGGAGTTGATAATCGT | + |
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Preference number: 6 (lower is better) Translates to: YHTLEVPQNLLVLLI*MLWDCLRKPGVDNR Trigger: ACGATTATCAACTCCAGGTTTGCGCAGGCAGTCCCACAACATCAAAATCAATAGGACAAGGAGATTCTGGGGGACCTCTAGTGTGTGATA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015576.6 |
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| CDS CCA 72 bp | CCCCAGAATCTCCTTGTCCTATTGATTTTGATGTTGTaGGACTGCCTGCGCAAACCTGGAGTTGATAATCGT | + |
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Preference number: 6 (lower is better) Translates to: PQNLLVLLILML*DCLRKPGVDNR Trigger: ACGATTATCAACTCCAGGTTTGCGCAGGCAGTCCCACAACATCAAAATCAATAGGACAAGGAGATTCTGGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000015576.6 |
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| CDS CAA 72 bp | TTCACTTCCATTACAGTGTGCAGCAGTCATCACAAATaGTGGGGCTATGAGAAACCCACCACACCTCTCCTT | + |
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Preference number: 6 (lower is better) Translates to: FTSITVCSSHHK*WGYEKPTTPLL Trigger: AAGGAGAGGTGTGGTGGGTTTCTCATAGCCCCACAATTTGTGATGACTGCTGCACACTGTAATGGAAGTGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015576.6 |
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| CDS CAA 72 bp | GTCCCCCAGAATCTCCTTGTCCTATTGATTTTGATGTaGTGGGACTGCCTGCGCAAACCTGGAGTTGATAAT | + |
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Preference number: 6 (lower is better) Translates to: VPQNLLVLLILM*WDCLRKPGVDN Trigger: ATTATCAACTCCAGGTTTGCGCAGGCAGTCCCACAACATCAAAATCAATAGGACAAGGAGATTCTGGGGGAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000015576.6 |
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| CDS GCA 72 bp | TCCAAGGATGACACTGATTTCACTTCCATTACAGTGTaGAGCAGTCATCACAAATTGTGGGGCTATGAGAAA | + |
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Preference number: 6 (lower is better) Translates to: SKDDTDFTSITV*SSHHKLWGYEK Trigger: TTTCTCATAGCCCCACAATTTGTGATGACTGCTGCACACTGTAATGGAAGTGAAATCAGTGTCATCCTTGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015576.6 |
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| CDS CAA 72 bp | TTGATAATCGTAATCACTGTGGTCTTTACAGGCCTCTaGATCCATGATTCTCAGTTCAACCTCTCTCAGGGT | + |
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Preference number: 6 (lower is better) Translates to: LIIVITVVFTGL*IHDSQFNLSQG Trigger: ACCCTGAGAGAGGTTGAACTGAGAATCATGGATCAAGAGGCCTGTAAAGACCACAGTGATTACGATTATCAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015576.6 |
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| CDS TCA 72 bp | CTTCCCAGGCTTGATGAAGTCAGAGGAACTAGGCAATaGAATTACATCCACATCAGAATTCAACTCTGCTTT | + |
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Preference number: 6 (lower is better) Translates to: LPRLDEVRGTRQ*NYIHIRIQLCF Trigger: AAAGCAGAGTTGAATTCTGATGTGGATGTAATTTCATTGCCTAGTTCCTCTGACTTCATCAAGCCTGGGAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015576.6 |
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| CDS TCA 72 bp | AATTCAACTCTGCTTTCTTTTGTAGCTTCAGTAACATaGTGTCATAGAAACCCGAAAGGTACTGAAACTTTG | + |
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Preference number: 6 (lower is better) Translates to: NSTLLSFVASVT*CHRNPKGTETL Trigger: CAAAGTTTCAGTACCTTTCGGGTTTCTATGACATCATGTTACTGAAGCTACAAAAGAAAGCAGAGTTGAATT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015576.6 |
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