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Pregenerated sensors for MCPT1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022227

Ensembl transcript IDs: ENSMUST00000022836.6

Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CCA 90 bp GGGAACAAACCATCATCACAGACTCCTGTATCTTTGAGATCCTCAAAGGGACAGAGGCTGCACATAGGCTaGGGTGAGGCTGGGGGCAGA +
Preference number: 2 (lower is better)
Translates to: GNKPSSQTPVSLRSSKGQRLHIG*GEAGGR
Trigger: TCTGCCCCCAGCCTCACCCCAGCCTATGTGCAGCCT...CTGTCCCTTTGAGGATCTCAAAGATACAGGAGTCTGTGATGATGGTTTGTTCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022836.6
3UTR TCA 72 bp CAGGGAACAAACCATCATCACAGACTCCTGTATCTTTaGGATCCTCAAAGGGACAGCTGGGGACAGAATGGG +
Preference number: 3 (lower is better)
Translates to: QGTNHHHRLLYL*DPQRDSWGQNG
Trigger: CCCATTCTGTCCCCAGCTGTCCCTTTGAGGATCTCAAAGATACAGGAGTCTGTGATGATGGTTTGTTCCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022836.6
3UTR CCA 72 bp CAAGCTTTGTTGAACACAAAGAGTACCAGAGAGCTCTaGCTTGGAGAATCTGTCTCAGGCTGGTCAGACTTC +
Preference number: 3 (lower is better)
Translates to: QALLNTKSTREL*LGESVSGWSDF
Trigger: GAAGTCTGACCAGCCTGAGACAGATTCTCCAAGCCAGAGCTCTCTGGTACTCTTTGTGTTCAACAAAGCTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022836.6
CDS-3UTR TCA 90 bp AGTACCAGAGAGCTCTGGCTTGGAGAATCTGTCTCAGGCTGGTCAGACTTCTCAATGCAGAGATTCTGGTaGAGACTGCAGGGGGCTTTC +
Preference number: 4 (lower is better)
Translates to: STRELWLGESVSGWSDFSMQRFW*RLQGAF
Trigger: GAAAGCCCCCTGCAGTCTTCACCAGAATCTCTGCAT...TGAGAAGTCTGACCAGCCTGAGACAGATTCTCCAAGCCAGAGCTCTCTGGTACT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022836.6
CDS-3UTR CCA 90 bp CACAAAGAGTACCAGAGAGCTCTGGCTTGGAGAATCTGTCTCAGGCTGGTCAGACTGTTTTTAACTTTGTaGAACTTCCCACACAGACCT +
Preference number: 4 (lower is better)
Translates to: HKEYQRALAWRICLRLVRLFLTL*NFPHRP
Trigger: AGGTCTGTGTGGGAAGTTCCACAAAGTTAAAAACAG...TCTGACCAGCCTGAGACAGATTCTCCAAGCCAGAGCTCTCTGGTACTCTTTGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022836.6
CDS-3UTR CCA 90 bp TTTATTGAGGTGCATTACAGGGAACAAACCATCATCACAGACTCCTGTATCTTTTTATCCTCTGTTGTGTaGATTCACTCTTGCTCACAT +
Preference number: 4 (lower is better)
Translates to: FIEVHYREQTIITDSCIFLSSVV*IHSCSH
Trigger: ATGTGAGCAAGAGTGAATCCACACAACAGAGGATAA...AAAGATACAGGAGTCTGTGATGATGGTTTGTTCCCTGTAATGCACCTCAATAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022836.6
CDS TCA 90 bp CACATATGCAGAGATTCTGGTGAAGACTGCAGGGGGCTTTCCATGTaGATCCCCATAAGATACAATACCATGGGCCACACCAGCACACAG +
Preference number: 5 (lower is better)
Translates to: HICRDSGEDCRGLSM*IPIRYNTMGHTSTQ
Trigger: CTGTGTGCTGGTGTGGCCCATGGTATTGTATCTTATGGGGATTCACATGGAAAGCCCCCTGCAGTCTTCACCAGAATCTCTGCATATGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022836.6
CDS CCA 90 bp ACAGTGATTTCTCTTCCTTTACAGTGTGCAGCAGTCAACACAAATTaGGGGGCTATGAGAAACCCACCACATCTGTCCTCAGAACCTCTG +
Preference number: 5 (lower is better)
Translates to: TVISLPLQCAAVNTN*GAMRNPPHLSSEPL
Trigger: CAGAGGTTCTGAGGACAGATGTGGTGGGTTTCTCATAGCCCCCCAATTTGTGTTGACTGCTGCACACTGTAAAGGAAGAGAAATCACTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022836.6
CDS-3UTR CAA 90 bp TCACAGACTCCTGTATCTTTGAGATCCTCAAAGGGACAGCTGGGGACAGAATGGATGCTGTTTTTAACTTaGTGGAACTTCCCACACAGA +
Preference number: 5 (lower is better)
Translates to: SQTPVSLRSSKGQLGTEWMLFLT*WNFPHR
Trigger: TCTGTGTGGGAAGTTCCACAAAGTTAAAAACAGCAT...CCATTCTGTCCCCAGCTGTCCCTTTGAGGATCTCAAAGATACAGGAGTCTGTGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022836.6
CDS TCA 90 bp TCGACTTTTATCCTCTGTTGTGTGGATTCACTCTTGCTCACATCATaGGCTCCAAGGGTGACAGTGATTTCTCTTCCTTTACAGTGTGCA +
Preference number: 5 (lower is better)
Translates to: STFILCCVDSLLLTS*APRVTVISLPLQCA
Trigger: TGCACACTGTAAAGGAAGAGAAATCACTGTCACCCTTGGAGCTCATGATGTGAGCAAGAGTGAATCCACACAACAGAGGATAAAAGTCGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022836.6
CDS CCA 90 bp GAAGAGGTCCCCCAGAGTCTCCCATGTATGCTGTTTTTAACTTTGTaGAACTTCCCACACAGACCTGGAAGTTATAGTCATAATGCTTAT +
Preference number: 5 (lower is better)
Translates to: EEVPQSLPCMLFLTL*NFPHRPGSYSHNAY
Trigger: ATAAGCATTATGACTATAACTTCCAGGTCTGTGTGGGAAGTTCCACAAAGTTAAAAACAGCATACATGGGAGACTCTGGGGGACCTCTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000022836.6
CDS TCA 72 bp AGAGATTCTGGTGAAGACTGCAGGGGGCTTTCCATGTaGATCCCCATAAGATACAATACCATGGGCCACACC +
Preference number: 6 (lower is better)
Translates to: RDSGEDCRGLSM*IPIRYNTMGHT
Trigger: GGTGTGGCCCATGGTATTGTATCTTATGGGGATTCACATGGAAAGCCCCCTGCAGTCTTCACCAGAATCTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022836.6
CDS TCA 72 bp ATCCATGATTCTCAGTTCAACCTCTCTCAGGGTTTCTaGGGTAGGTTCTTTCTCTCCAGTTTTCCCCCAGCC +
Preference number: 6 (lower is better)
Translates to: IHDSQFNLSQGF*GRFFLSSFPPA
Trigger: GGCTGGGGGAAAACTGGAGAGAAAGAACCTACCTCAGAAACCCTGAGAGAGGTTGAACTGAGAATCATGGAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022836.6
CDS CCA 72 bp TCTCTTCCTTTACAGTGTGCAGCAGTCAACACAAATTaGGGGGCTATGAGAAACCCACCACATCTGTCCTCA +
Preference number: 6 (lower is better)
Translates to: SLPLQCAAVNTN*GAMRNPPHLSS
Trigger: TGAGGACAGATGTGGTGGGTTTCTCATAGCCCCCCAATTTGTGTTGACTGCTGCACACTGTAAAGGAAGAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022836.6
CDS CAA 90 bp ACAGAAGAGGTCCCCCAGAGTCTCCCATGTATGCTGTTTTTAACTTaGTGGAACTTCCCACACAGACCTGGAAGTTATAGTCATAATGCT +
Preference number: 6 (lower is better)
Translates to: TEEVPQSLPCMLFLT*WNFPHRPGSYSHNA
Trigger: AGCATTATGACTATAACTTCCAGGTCTGTGTGGGAAGTTCCACAAAGTTAAAAACAGCATACATGGGAGACTCTGGGGGACCTCTTCTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000022836.6
CDS CCA 72 bp CCCCAGAGTCTCCCATGTATGCTGTTTTTAACTTTGTaGAACTTCCCACACAGACCTGGAAGTTATAGTCAT +
Preference number: 6 (lower is better)
Translates to: PQSLPCMLFLTL*NFPHRPGSYSH
Trigger: ATGACTATAACTTCCAGGTCTGTGTGGGAAGTTCCACAAAGTTAAAAACAGCATACATGGGAGACTCTGGGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022836.6