Pregenerated sensors for MCOLN3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036853Ensembl transcript IDs: ENSMUST00000039450.5, ENSMUST00000140214.3
Found 93 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GAATCAAAGACTGTCCTTCAGAGCCAAGCATCCCACACACAGCTGTaGTGGGGCTCTCTATTGTTCTGTCTTCATTTAAGGAGAGACTCC | + |
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Preference number: 1 (lower is better) Translates to: ESKTVLQSQASHTQL*WGSLLFCLHLRRDS Trigger: GGAGTCTCTCCTTAAATGAAGACAGAACAATAGAGAGCCCCATCACAGCTGTGTGTGGGATGCTTGGCTCTGAAGGACAGTCTTTGATTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| 3UTR CCA 90 bp | GGCCCATGGAACACACATTGTATCACCAATTCCCCCAATGCTGCTTaGATGCTAATAAAGCCATCACTGTTTAATCAAATGCCTCCTTGG | + |
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Preference number: 1 (lower is better) Translates to: GPWNTHCITNSPNAA*MLIKPSLFNQMPPW Trigger: CCAAGGAGGCATTTGATTAAACAGTGATGGCTTTATTAGCATCCAAGCAGCATTGGGGGAATTGGTGATACAATGTGTGTTCCATGGGCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| 3UTR TCA 90 bp | CTCTCTATTGTTCTGTCTTCATTTAAGGAGAGACTCCATGGTGTCTaGTGTGTAATAATTATCCCAACTCTCAGAGAGGGGAACTGGGTC | + |
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Preference number: 1 (lower is better) Translates to: LSIVLSSFKERLHGV*CVIIIPTLREGNWV Trigger: GACCCAGTTCCCCTCTCTGAGAGTTGGGATAATTATTACACATCAGACACCATGGAGTCTCTCCTTAAATGAAGACAGAACAATAGAGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| 3UTR TCA 90 bp | TGTTTGTTAACTCAGAATACTAGTATCTGGACATATACTGTTGCGTaGTCACAAATAATCTCTGGCTCAGCCACACACTGTATTTTCCTC | + |
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Preference number: 1 (lower is better) Translates to: CLLTQNTSIWTYTVA*SQIISGSATHCIFL Trigger: GAGGAAAATACAGTGTGTGGCTGAGCCAGAGATTATTTGTGATCACGCAACAGTATATGTCCAGATACTAGTATTCTGAGTTAACAAACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| 3UTR-3UTR TCA 90 bp | CCTTCAGAGCCAAGCATCCCACACACAGCTGTGATGGGGCTCTCTATTGTTCTGGTCATCCAAAGTTTCTaGGAAGCGAAAGCTTATTTC | + |
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Preference number: 2 (lower is better) Translates to: PSEPSIPHTAVMGLSIVLVIQSF*EAKAYF Trigger: GAAATAAGCTTTCGCTTCTCAGAAACTTTGGATGAC...CAGAACAATAGAGAGCCCCATCACAGCTGTGTGTGGGATGCTTGGCTCTGAAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| 3UTR-3UTR TCA 90 bp | TCTCCACTTAATTTATTGAGGCAGGTTCTCTCCATTAAACCCAGAGCTCTCCAATCCCACACACAGCTGTaGTGGGGCTCTCTATTGTTC | + |
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Preference number: 2 (lower is better) Translates to: SPLNLLRQVLSIKPRALQSHTQL*WGSLLF Trigger: GAACAATAGAGAGCCCCATCACAGCTGTGTGTGGGA...TTGGAGAGCTCTGGGTTTAATGGAGAGAACCTGCCTCAATAAATTAAGTGGAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| 3UTR-3UTR GCA 90 bp | GAGCCAAGCATCCCACACACAGCTGTGATGGGGCTCTCTATTGTTCTGTCTTCACTGGACATATACTGTTaGGTGATCACAAATAATCTC | + |
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Preference number: 2 (lower is better) Translates to: EPSIPHTAVMGLSIVLSSLDIYC*VITNNL Trigger: GAGATTATTTGTGATCACGCAACAGTATATGTCCAG...TGAAGACAGAACAATAGAGAGCCCCATCACAGCTGTGTGTGGGATGCTTGGCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| 3UTR-3UTR GCA 90 bp | CCGTGTATAGACTCTCTTCCAATCTTGTACCTTAACACTGAAGGGCAGAAAGCTTGCAGGCACAAGGCTTaGTGTGTGGTAAAGAGAACA | + |
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Preference number: 2 (lower is better) Translates to: PCIDSLPILYLNTEGQKACRHKA*CVVKRT Trigger: TGTTCTCTTTACCACACAGCAAGCCTTGTGCCTGCA...AGCTTTCTGCCCTTCAGTGTTAAGGTACAAGATTGGAAGAGAGTCTATACACGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| 3UTR-3UTR CCA 90 bp | GTTCTAGAACTTCAAACCACAGAGCCACAAATCCTGACCCCAAATGGGTTTCCTTCCCCCAATGCTGCTTaGATGCTAATAAAGCCATCA | + |
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Preference number: 2 (lower is better) Translates to: VLELQTTEPQILTPNGFPSPNAA*MLIKPS Trigger: TGATGGCTTTATTAGCATCCAAGCAGCATTGGGGGA...AGGAAACCCATTTGGGGTCAGGATTTGTGGCTCTGTGGTTTGAAGTTCTAGAAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| 3UTR-3UTR GCA 90 bp | TCTCCACTTAATTTATTGAGGCAGGTTCTCTCCATTAAACCCAGAGCTCTCCAAAAAGCTTATTTCCAGTaGAGGCACAAGGCTTGCTGT | + |
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Preference number: 2 (lower is better) Translates to: SPLNLLRQVLSIKPRALQKAYFQ*RHKACC Trigger: ACAGCAAGCCTTGTGCCTGCACTGGAAATAAGCTTT...TTGGAGAGCTCTGGGTTTAATGGAGAGAACCTGCCTCAATAAATTAAGTGGAGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| 3UTR-3UTR CCA 90 bp | CCCATTAGAGAACTACAAAATGTAGAGCCTAATTCTGTGCCTTTTCAAGCTACATCCTTGGTGTGCATTTaGACTTCATCCGTGTATAGA | + |
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Preference number: 2 (lower is better) Translates to: PIRELQNVEPNSVPFQATSLVCI*TSSVYR Trigger: TCTATACACGGATGAAGTCCAAATGCACACCAAGGA...TGTAGCTTGAAAAGGCACAGAATTAGGCTCTACATTTTGTAGTTCTCTAATGGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| 3UTR-3UTR CAA 90 bp | AGCATCCCACACACAGCTGTGATGGGGCTCTCTATTGTTCTGTCTTCATTTAAGGTGCAGGCACAAGGCTaGCTGTGTGGTAAAGAGAAC | + |
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Preference number: 3 (lower is better) Translates to: SIPHTAVMGLSIVLSSFKVQAQG*LCGKEN Trigger: GTTCTCTTTACCACACAGCAAGCCTTGTGCCTGCAC...CTTAAATGAAGACAGAACAATAGAGAGCCCCATCACAGCTGTGTGTGGGATGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| 3UTR TCA 72 bp | ACTGTCCTTCAGAGCCAAGCATCCCACACACAGCTGTaGTGGGGCTCTCTATTGTTCTGTCTTCATTTAAGG | + |
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Preference number: 3 (lower is better) Translates to: TVLQSQASHTQL*WGSLLFCLHLR Trigger: CCTTAAATGAAGACAGAACAATAGAGAGCCCCATCACAGCTGTGTGTGGGATGCTTGGCTCTGAAGGACAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| 3UTR GCA 72 bp | GAAGCGAAAGCTTATTTCCAGTGCAGGCACAAGGCTTaGTGTGTGGTAAAGAGAACATACCCAAGACCTACA | + |
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Preference number: 3 (lower is better) Translates to: EAKAYFQCRHKA*CVVKRTYPRPT Trigger: TGTAGGTCTTGGGTATGTTCTCTTTACCACACAGCAAGCCTTGTGCCTGCACTGGAAATAAGCTTTCGCTTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| 3UTR CCA 72 bp | CTGGACATATACTGTTGCGTGATCACAAATAATCTCTaGCTCAGCCACACACTGTATTTTCCTCCCAAGCAC | + |
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Preference number: 3 (lower is better) Translates to: LDIYCCVITNNL*LSHTLYFPPKH Trigger: GTGCTTGGGAGGAAAATACAGTGTGTGGCTGAGCCAGAGATTATTTGTGATCACGCAACAGTATATGTCCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| 3UTR TCA 72 bp | GTTCTGTCTTCATTTAAGGAGAGACTCCATGGTGTCTaGTGTGTAATAATTATCCCAACTCTCAGAGAGGGG | + |
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Preference number: 3 (lower is better) Translates to: VLSSFKERLHGV*CVIIIPTLREG Trigger: CCCCTCTCTGAGAGTTGGGATAATTATTACACATCAGACACCATGGAGTCTCTCCTTAAATGAAGACAGAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| 3UTR TCA 72 bp | ACTCAGAATACTAGTATCTGGACATATACTGTTGCGTaGTCACAAATAATCTCTGGCTCAGCCACACACTGT | + |
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Preference number: 3 (lower is better) Translates to: TQNTSIWTYTVA*SQIISGSATHC Trigger: ACAGTGTGTGGCTGAGCCAGAGATTATTTGTGATCACGCAACAGTATATGTCCAGATACTAGTATTCTGAGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| 3UTR TCA 72 bp | TTGTACCTTAACACTGAAGGGCAGAAAGCTTCTAAATaGATAGGAGAATCAAAGACTGTCCTTCAGAGCCAA | + |
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Preference number: 3 (lower is better) Translates to: LYLNTEGQKASK*IGESKTVLQSQ Trigger: TTGGCTCTGAAGGACAGTCTTTGATTCTCCTATTCATTTAGAAGCTTTCTGCCCTTCAGTGTTAAGGTACAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| 3UTR CCA 72 bp | CTAATAAAGCCATCACTGTTTAATCAAATGCCTCCTTaGTGTGCATTTGGACTTCATCCGTGTATAGACTCT | + |
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Preference number: 3 (lower is better) Translates to: LIKPSLFNQMPP*CAFGLHPCIDS Trigger: AGAGTCTATACACGGATGAAGTCCAAATGCACACCAAGGAGGCATTTGATTAAACAGTGATGGCTTTATTAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS-3UTR GCA 90 bp | CCTTCAGAGCCAAGCATCCCACACACAGCTGTGATGGGGCTCTCTATTGTTCTGGACGTTGGGCAGCGCTaGCTGGAGGGTCAGAATAAG | + |
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Preference number: 4 (lower is better) Translates to: PSEPSIPHTAVMGLSIVLDVGQR*LEGQNK Trigger: CTTATTCTGACCCTCCAGGCAGCGCTGCCCAACGTC...CAGAACAATAGAGAGCCCCATCACAGCTGTGTGTGGGATGCTTGGCTCTGAAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS-3UTR TCA 90 bp | AGACTGCACAGGCCCATGGAACACACATTGTATCACCAATTCCCCCAATGCTGCCCACACGAGCATAGTTaGCGTCCCGAGAAGTATGCT | + |
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Preference number: 4 (lower is better) Translates to: RLHRPMEHTLYHQFPQCCPHEHS*RPEKYA Trigger: AGCATACTTCTCGGGACGTCAACTATGCTCGTGTGG...GCAGCATTGGGGGAATTGGTGATACAATGTGTGTTCCATGGGCCTGTGCAGTCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS-3UTR TCA 90 bp | CAACTCTCAGAGAGGGGAACTGGGTCATCCAAAGTTTCTGAGAAGCGAAAGCTTAGCAACAGAACCTCATaGCGTTGGGCAGCGCTGCCT | + |
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Preference number: 4 (lower is better) Translates to: QLSERGTGSSKVSEKRKLSNRTS*RWAALP Trigger: AGGCAGCGCTGCCCAACGTCATGAGGTTCTGTTGCT...AAGCTTTCGCTTCTCAGAAACTTTGGATGACCCAGTTCCCCTCTCTGAGAGTTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS-3UTR GCA 90 bp | AGACTGCACAGGCCCATGGAACACACATTGTATCACCAATTCCCCCAATGCTGCTCTTCTAAGAGAAGCTaGTCTGACGGGGACGAGCTC | + |
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Preference number: 4 (lower is better) Translates to: RLHRPMEHTLYHQFPQCCSSKRS*SDGDEL Trigger: GAGCTCGTCCCCGTCAGAGCAGCTTCTCTTAGAAGA...GCAGCATTGGGGGAATTGGTGATACAATGTGTGTTCCATGGGCCTGTGCAGTCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS-3UTR TCA 90 bp | AGACTGCACAGGCCCATGGAACACACATTGTATCACCAATTCCCCCAATGCTGCAGTCCAGGCTCAGGTTaGGTTTATTTTCTCCAGGCG | + |
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Preference number: 4 (lower is better) Translates to: RLHRPMEHTLYHQFPQCCSPGSG*VYFLQA Trigger: CGCCTGGAGAAAATAAACTCAACCTGAGCCTGGACT...GCAGCATTGGGGGAATTGGTGATACAATGTGTGTTCCATGGGCCTGTGCAGTCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS-3UTR GCA 90 bp | GAGCCAAGCATCCCACACACAGCTGTGATGGGGCTCTCTATTGTTCTGTCTTCAGAAGTGCTGACAGATTaGCATCGCCGACTGCTTAGT | + |
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Preference number: 4 (lower is better) Translates to: EPSIPHTAVMGLSIVLSSEVLTD*HRRLLS Trigger: ACTAAGCAGTCGGCGATGGCAATCTGTCAGCACTTC...TGAAGACAGAACAATAGAGAGCCCCATCACAGCTGTGTGTGGGATGCTTGGCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS-3UTR CCA 90 bp | CCGTGTATAGACTCTCTTCCAATCTTGTACCTTAACACTGAAGGGCAGAAAGCTGGGGACGAGCTCGGGTaGAAAGTGCAGGGGCTTTCA | + |
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Preference number: 4 (lower is better) Translates to: PCIDSLPILYLNTEGQKAGDELG*KVQGLS Trigger: TGAAAGCCCCTGCACTTTCCACCCGAGCTCGTCCCC...AGCTTTCTGCCCTTCAGTGTTAAGGTACAAGATTGGAAGAGAGTCTATACACGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS-3UTR GCA 90 bp | AGCATCCCACACACAGCTGTGATGGGGCTCTCTATTGTTCTGTCTTCATTTAAGAGCTCGGGTGGAAAGTaGAGGGGCTTTCATCTTGGC | + |
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Preference number: 4 (lower is better) Translates to: SIPHTAVMGLSIVLSSFKSSGGK*RGFHLG Trigger: GCCAAGATGAAAGCCCCTGCACTTTCCACCCGAGCT...CTTAAATGAAGACAGAACAATAGAGAGCCCCATCACAGCTGTGTGTGGGATGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS-3UTR GCA 90 bp | GAGCCAAGCATCCCACACACAGCTGTGATGGGGCTCTCTATTGTTCTGTCTTCAACGTCCCGAGAAGTATaGTGCAGACATCATAGCTTG | + |
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Preference number: 4 (lower is better) Translates to: EPSIPHTAVMGLSIVLSSTSREV*CRHHSL Trigger: CAAGCTATGATGTCTGCAGCATACTTCTCGGGACGT...TGAAGACAGAACAATAGAGAGCCCCATCACAGCTGTGTGTGGGATGCTTGGCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS-3UTR CCA 90 bp | AGACTGCACAGGCCCATGGAACACACATTGTATCACCAATTCCCCCAATGCTGCAGTTTCCGCCTCATCTaGTCTTCTAAGAGAAGCTGC | + |
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Preference number: 4 (lower is better) Translates to: RLHRPMEHTLYHQFPQCCSFRLI*SSKRSC Trigger: GCAGCTTCTCTTAGAAGACCAGATGAGGCGGAAACT...GCAGCATTGGGGGAATTGGTGATACAATGTGTGTTCCATGGGCCTGTGCAGTCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS-3UTR CCA 90 bp | GAGCCAAGCATCCCACACACAGCTGTGATGGGGCTCTCTATTGTTCTGTCTTCAGCTTTGAGCTTAAACTaGAGCTCCACCGTCAGAAGT | + |
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Preference number: 4 (lower is better) Translates to: EPSIPHTAVMGLSIVLSSALSLN*SSTVRS Trigger: ACTTCTGACGGTGGAGCTCCAGTTTAAGCTCAAAGC...TGAAGACAGAACAATAGAGAGCCCCATCACAGCTGTGTGTGGGATGCTTGGCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS-3UTR TCA 90 bp | GAGCCAAGCATCCCACACACAGCTGTGATGGGGCTCTCTATTGTTCTGTCTTCATGTGTTCTTCTGAATTaGTCCAGACACATGCCAGTC | + |
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Preference number: 4 (lower is better) Translates to: EPSIPHTAVMGLSIVLSSCVLLN*SRHMPV Trigger: GACTGGCATGTGTCTGGATCAATTCAGAAGAACACA...TGAAGACAGAACAATAGAGAGCCCCATCACAGCTGTGTGTGGGATGCTTGGCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS-3UTR TCA 90 bp | CCAGTGCAGGCACAAGGCTTGCTGTGTGGTAAAGAGAACATACCCAAGACCTACGAAGAAGGAAGAAGTTaGCAAACTCCTGCTGAAGCT | + |
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Preference number: 4 (lower is better) Translates to: PVQAQGLLCGKENIPKTYEEGRS*QTPAEA Trigger: AGCTTCAGCAGGAGTTTGTCAACTTCTTCCTTCTTC...GTAGGTCTTGGGTATGTTCTCTTTACCACACAGCAAGCCTTGTGCCTGCACTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS-3UTR CCA 90 bp | CCGTGTATAGACTCTCTTCCAATCTTGTACCTTAACACTGAAGGGCAGAAAGCTTTGGGCAGCGCTGCCTaGAGGGTCAGAATAAGGAGA | + |
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Preference number: 4 (lower is better) Translates to: PCIDSLPILYLNTEGQKALGSAA*RVRIRR Trigger: TCTCCTTATTCTGACCCTCCAGGCAGCGCTGCCCAA...AGCTTTCTGCCCTTCAGTGTTAAGGTACAAGATTGGAAGAGAGTCTATACACGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS-3UTR CCA 90 bp | AAAGCTTATTTCCAGTGCAGGCACAAGGCTTGCTGTGTGGTAAAGAGAACATACTATGGCAAGTTTCCATaGCTTCCTACCCCGAGCCCA | + |
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Preference number: 4 (lower is better) Translates to: KAYFQCRHKACCVVKRTYYGKFP*LPTPSP Trigger: TGGGCTCGGGGTAGGAAGCCATGGAAACTTGCCATA...GTATGTTCTCTTTACCACACAGCAAGCCTTGTGCCTGCACTGGAAATAAGCTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS-3UTR CCA 90 bp | GTTCTAGAACTTCAAACCACAGAGCCACAAATCCTGACCCCAAATGGGTTTCCTTCGAAGTTCCGTCTCTaGGAAGCCATCTTGCTGGTA | + |
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Preference number: 4 (lower is better) Translates to: VLELQTTEPQILTPNGFPSKFRL*EAILLV Trigger: TACCAGCAAGATGGCTTCCCAGAGACGGAACTTCGA...AGGAAACCCATTTGGGGTCAGGATTTGTGGCTCTGTGGTTTGAAGTTCTAGAAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS-3UTR CCA 90 bp | TCTCCACTTAATTTATTGAGGCAGGTTCTCTCCATTAAACCCAGAGCTCTCCAACAGTCAGGAAGCTCCTaGTGTCGAACTGTCTGCAGA | + |
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Preference number: 4 (lower is better) Translates to: SPLNLLRQVLSIKPRALQQSGSS*CRTVCR Trigger: TCTGCAGACAGTTCGACACCAGGAGCTTCCTGACTG...TTGGAGAGCTCTGGGTTTAATGGAGAGAACCTGCCTCAATAAATTAAGTGGAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS-3UTR CCA 90 bp | AGACTGCACAGGCCCATGGAACACACATTGTATCACCAATTCCCCCAATGCTGCGTGAGACTCTTGGCTTaGATTTCCATTTTCAGAACT | + |
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Preference number: 4 (lower is better) Translates to: RLHRPMEHTLYHQFPQCCVRLLA*ISIFRT Trigger: AGTTCTGAAAATGGAAATCCAAGCCAAGAGTCTCAC...GCAGCATTGGGGGAATTGGTGATACAATGTGTGTTCCATGGGCCTGTGCAGTCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS-3UTR TCA 90 bp | GTTCTAGAACTTCAAACCACAGAGCCACAAATCCTGACCCCAAATGGGTTTCCTTTGATTCTTCCACTGTaGGCCTTGTTGTCGAATGTT | + |
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Preference number: 4 (lower is better) Translates to: VLELQTTEPQILTPNGFPLILPL*ALLSNV Trigger: AACATTCGACAACAAGGCTCACAGTGGAAGAATCAA...AGGAAACCCATTTGGGGTCAGGATTTGTGGCTCTGTGGTTTGAAGTTCTAGAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS-3UTR TCA 90 bp | CCGTGTATAGACTCTCTTCCAATCTTGTACCTTAACACTGAAGGGCAGAAAGCTCCAAGCAGGTCAGAATaGCAAAGGCATCAAAGATCA | + |
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Preference number: 4 (lower is better) Translates to: PCIDSLPILYLNTEGQKAPSRSE*QRHQRS Trigger: TGATCTTTGATGCCTTTGTCATTCTGACCTGCTTGG...AGCTTTCTGCCCTTCAGTGTTAAGGTACAAGATTGGAAGAGAGTCTATACACGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS-3UTR CCA 90 bp | CAACTCTCAGAGAGGGGAACTGGGTCATCCAAAGTTTCTGAGAAGCGAAAGCTTGCATTTTCGCAAATGTaGAAAACATATCGTCTCCGT | + |
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Preference number: 4 (lower is better) Translates to: QLSERGTGSSKVSEKRKLAFSQM*KTYRLR Trigger: ACGGAGACGATATGTTTTCCACATTTGCGAAAATGC...AAGCTTTCGCTTCTCAGAAACTTTGGATGACCCAGTTCCCCTCTCTGAGAGTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS-3UTR TCA 90 bp | CCGTGTATAGACTCTCTTCCAATCTTGTACCTTAACACTGAAGGGCAGAAAGCTTGTCTAAGCTTATTTTaGTTCTTCCACTGTGAGCCT | + |
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Preference number: 4 (lower is better) Translates to: PCIDSLPILYLNTEGQKACLSLF*FFHCEP Trigger: AGGCTCACAGTGGAAGAATCAAAATAAGCTTAGACA...AGCTTTCTGCCCTTCAGTGTTAAGGTACAAGATTGGAAGAGAGTCTATACACGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS-3UTR CCA 90 bp | CCGTGTATAGACTCTCTTCCAATCTTGTACCTTAACACTGAAGGGCAGAAAGCTTTCTGTTTCAACTTCTaGATCGATGTCAAAGGTGTC | + |
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Preference number: 4 (lower is better) Translates to: PCIDSLPILYLNTEGQKAFCFNF*IDVKGV Trigger: GACACCTTTGACATCGATCCAGAAGTTGAAACAGAA...AGCTTTCTGCCCTTCAGTGTTAAGGTACAAGATTGGAAGAGAGTCTATACACGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| 3UTR CAA 72 bp | AAAAACTATGAACAGGTCCTGCTAAGTCATAGCTGTTaGTTAACTCAGAATACTAGTATCTGGACATATACT | + |
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Preference number: 4 (lower is better) Translates to: KNYEQVLLSHSC*LTQNTSIWTYT Trigger: AGTATATGTCCAGATACTAGTATTCTGAGTTAACAAACAGCTATGACTTAGCAGGACCTGTTCATAGTTTTT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS CCA 90 bp | ATCTGGTCTTCTAAGAGAAGCTGCTCTGACGGGGACGAGCTCGGGTaGAAAGTGCAGGGGCTTTCATCTTGGCGAGCTCTGCAGCTGCTA | + |
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Preference number: 5 (lower is better) Translates to: IWSSKRSCSDGDELG*KVQGLSSWRALQLL Trigger: TAGCAGCTGCAGAGCTCGCCAAGATGAAAGCCCCTGCACTTTCCACCCGAGCTCGTCCCCGTCAGAGCAGCTTCTCTTAGAAGACCAGAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000039450.5 ENSMUST00000140214.3 |
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| CDS-3UTR CAA 90 bp | AGACTGCACAGGCCCATGGAACACACATTGTATCACCAATTCCCCCAATGCTGCCAGAACCTCATGACGTaGGGCAGCGCTGCCTGGAGG | + |
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Preference number: 5 (lower is better) Translates to: RLHRPMEHTLYHQFPQCCQNLMT*GSAAWR Trigger: CCTCCAGGCAGCGCTGCCCAACGTCATGAGGTTCTG...GCAGCATTGGGGGAATTGGTGATACAATGTGTGTTCCATGGGCCTGTGCAGTCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS GCA 90 bp | GTTCCCGGGGCAGATGGTTCCTTGCCTGTAGAAGTGCTGACAGATTaGCATCGCCGACTGCTTAGTCCCCTTGTTCTCATAAGCGTGATT | + |
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Preference number: 5 (lower is better) Translates to: VPGADGSLPVEVLTD*HRRLLSPLVLISVI Trigger: AATCACGCTTATGAGAACAAGGGGACTAAGCAGTCGGCGATGGCAATCTGTCAGCACTTCTACAGGCAAGGAACCATCTGCCCCGGGAAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS CCA 90 bp | ATAGCAGCGCAGCAACAGAACCTCATGACGTTGGGCAGCGCTGCCTaGAGGGTCAGAATAAGGAGATTGTACTTCGCAAAGAAACCCAGG | + |
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Preference number: 5 (lower is better) Translates to: IAAQQQNLMTLGSAA*RVRIRRLYFAKKPR Trigger: CCTGGGTTTCTTTGCGAAGTACAATCTCCTTATTCTGACCCTCCAGGCAGCGCTGCCCAACGTCATGAGGTTCTGTTGCTGCGCTGCTAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS GCA 90 bp | GATCATAGCAGCGCAGCAACAGAACCTCATGACGTTGGGCAGCGCTaGCTGGAGGGTCAGAATAAGGAGATTGTACTTCGCAAAGAAACC | + |
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Preference number: 5 (lower is better) Translates to: DHSSAATEPHDVGQR*LEGQNKEIVLRKET Trigger: GGTTTCTTTGCGAAGTACAATCTCCTTATTCTGACCCTCCAGGCAGCGCTGCCCAACGTCATGAGGTTCTGTTGCTGCGCTGCTATGATC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS CCA 90 bp | TTTCAACTTCTGGATCGATGTCAAAGGTGTCGTTCCCGGGGCAGATaGTTCCTTGCCTGTAGAAGTGCTGACAGATTGCCATCGCCGACT | + |
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Preference number: 5 (lower is better) Translates to: FQLLDRCQRCRSRGR*FLACRSADRLPSPT Trigger: AGTCGGCGATGGCAATCTGTCAGCACTTCTACAGGCAAGGAACCATCTGCCCCGGGAACGACACCTTTGACATCGATCCAGAAGTTGAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS CCA 90 bp | TCCTGGTGTCGAACTGTCTGCAGATTGATGGCTTTGAGCTTAAACTaGAGCTCCACCGTCAGAAGTCTGTGGAAGTCCAGGCTCAGGTTG | + |
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Preference number: 5 (lower is better) Translates to: SWCRTVCRLMALSLN*SSTVRSLWKSRLRL Trigger: CAACCTGAGCCTGGACTTCCACAGACTTCTGACGGTGGAGCTCCAGTTTAAGCTCAAAGCCATCAATCTGCAGACAGTTCGACACCAGGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS-3UTR CAA 90 bp | CCAGTGCAGGCACAAGGCTTGCTGTGTGGTAAAGAGAACATACCCAAGACCTACCTGTATTTTCCGGAGTaGGGGAGGTCTTTGCATTCC | + |
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Preference number: 5 (lower is better) Translates to: PVQAQGLLCGKENIPKTYLYFPE*GRSLHS Trigger: GGAATGCAAAGACCTCCCCAACTCCGGAAAATACAG...GTAGGTCTTGGGTATGTTCTCTTTACCACACAGCAAGCCTTGTGCCTGCACTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS TCA 90 bp | CTGAAGCTGAAGACCCCTAATCACAGACCTGGCACACAGCACCAGTaGGGCCAAGCAGGTCAGAATGACAAAGGCATCAAAGATCATCAT | + |
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Preference number: 5 (lower is better) Translates to: LKLKTPNHRPGTQHQ*GQAGQNDKGIKDHH Trigger: ATGATGATCTTTGATGCCTTTGTCATTCTGACCTGCTTGGCCTCACTGGTGCTGTGTGCCAGGTCTGTGATTAGGGGTCTTCAGCTTCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS-3UTR CAA 90 bp | AGCATCCCACACACAGCTGTGATGGGGCTCTCTATTGTTCTGTCTTCATTTAAGGGGGCAGATGGTTCCTaGCCTGTAGAAGTGCTGACA | + |
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Preference number: 5 (lower is better) Translates to: SIPHTAVMGLSIVLSSFKGADGS*PVEVLT Trigger: TGTCAGCACTTCTACAGGCAAGGAACCATCTGCCCC...CTTAAATGAAGACAGAACAATAGAGAGCCCCATCACAGCTGTGTGTGGGATGCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS GCA 90 bp | GTGATTGCCCACGGAGATGTTCTGAAGCTGCAAGTACTGGGTCACTaGAAAGATGATCTGGTCATACACTTCACTCTGAGTGTACACTGC | + |
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Preference number: 5 (lower is better) Translates to: VIAHGDVLKLQVLGH*KDDLVIHFTLSVHC Trigger: GCAGTGTACACTCAGAGTGAAGTGTATGACCAGATCATCTTTGCAGTGACCCAGTACTTGCAGCTTCAGAACATCTCCGTGGGCAATCAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS CCA 90 bp | TTGATGGCTTTGAGCTTAAACTGGAGCTCCACCGTCAGAAGTCTGTaGAAGTCCAGGCTCAGGTTGAGTTTATTTTCTCCAGGCGTTCCA | + |
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Preference number: 5 (lower is better) Translates to: LMALSLNWSSTVRSL*KSRLRLSLFSPGVP Trigger: TGGAACGCCTGGAGAAAATAAACTCAACCTGAGCCTGGACTTCCACAGACTTCTGACGGTGGAGCTCCAGTTTAAGCTCAAAGCCATCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS-3UTR CAA 90 bp | AGACTGCACAGGCCCATGGAACACACATTGTATCACCAATTCCCCCAATGCTGCGAGTTGGGGAGGTCTTaGCATTCCGCTATAAACTTT | + |
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Preference number: 5 (lower is better) Translates to: RLHRPMEHTLYHQFPQCCELGRS*HSAINF Trigger: AAAGTTTATAGCGGAATGCAAAGACCTCCCCAACTC...GCAGCATTGGGGGAATTGGTGATACAATGTGTGTTCCATGGGCCTGTGCAGTCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS TCA 90 bp | CCACGGAGATGTTCTGAAGCTGCAAGTACTGGGTCACTGCAAAGATaGTCTGGTCATACACTTCACTCTGAGTGTACACTGCATAGGTGT | + |
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Preference number: 5 (lower is better) Translates to: PRRCSEAASTGSLQR*SGHTLHSECTLHRC Trigger: ACACCTATGCAGTGTACACTCAGAGTGAAGTGTATGACCAGATCATCTTTGCAGTGACCCAGTACTTGCAGCTTCAGAACATCTCCGTGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS-3UTR CAA 90 bp | CAACTCTCAGAGAGGGGAACTGGGTCATCCAAAGTTTCTGAGAAGCGAAAGCTTAAGTCCAGGCTCAGGTaGAGTTTATTTTCTCCAGGC | + |
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Preference number: 5 (lower is better) Translates to: QLSERGTGSSKVSEKRKLKSRLR*SLFSPG Trigger: GCCTGGAGAAAATAAACTCAACCTGAGCCTGGACTT...AAGCTTTCGCTTCTCAGAAACTTTGGATGACCCAGTTCCCCTCTCTGAGAGTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS CCA 90 bp | GGGGAGGTCTTTGCATTCCGCTATAAACTTTCGAAGTTCCGTCTCTaGGAAGCCATCTTGCTGGTAGTGCTTAATTGTTTCGTATGTGTC | + |
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Preference number: 5 (lower is better) Translates to: GEVFAFRYKLSKFRL*EAILLVVLNCFVCV Trigger: GACACATACGAAACAATTAAGCACTACCAGCAAGATGGCTTCCCAGAGACGGAACTTCGAAAGTTTATAGCGGAATGCAAAGACCTCCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS-3UTR CAA 90 bp | CCAGTGCAGGCACAAGGCTTGCTGTGTGGTAAAGAGAACATACCCAAGACCTACGACACATGCCAGTCTTaGCATTCTTTGATAGAAATG | + |
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Preference number: 5 (lower is better) Translates to: PVQAQGLLCGKENIPKTYDTCQS*HSLIEM Trigger: CATTTCTATCAAAGAATGCAAAGACTGGCATGTGTC...GTAGGTCTTGGGTATGTTCTCTTTACCACACAGCAAGCCTTGTGCCTGCACTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS CCA 90 bp | AAGTCCAGGCTCAGGTTGAGTTTATTTTCTCCAGGCGTTCCAAGGTaGGAAGCTTCATCTGGCTCTACAAGGAAACATTCTGTTTCAACT | + |
|
Preference number: 5 (lower is better) Translates to: KSRLRLSLFSPGVPR*EASSGSTRKHSVST Trigger: AGTTGAAACAGAATGTTTCCTTGTAGAGCCAGATGAAGCTTCCCACCTTGGAACGCCTGGAGAAAATAAACTCAACCTGAGCCTGGACTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS-3UTR CAA 90 bp | CAACTCTCAGAGAGGGGAACTGGGTCATCCAAAGTTTCTGAGAAGCGAAAGCTTATAGTGTTCTCCTCTTaGAAAGCTACTACCATCTGG | + |
|
Preference number: 5 (lower is better) Translates to: QLSERGTGSSKVSEKRKLIVFSS*KATTIW Trigger: CCAGATGGTAGTAGCTTTCAAAGAGGAGAACACTAT...AAGCTTTCGCTTCTCAGAAACTTTGGATGACCCAGTTCCCCTCTCTGAGAGTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS-3UTR CAA 90 bp | GTTCTAGAACTTCAAACCACAGAGCCACAAATCCTGACCCCAAATGGGTTTCCTCGAACTGTCTGCAGATaGATGGCTTTGAGCTTAAAC | + |
|
Preference number: 5 (lower is better) Translates to: VLELQTTEPQILTPNGFPRTVCR*MALSLN Trigger: GTTTAAGCTCAAAGCCATCAATCTGCAGACAGTTCG...AGGAAACCCATTTGGGGTCAGGATTTGTGGCTCTGTGGTTTGAAGTTCTAGAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS CCA 90 bp | GTTGAGTTTATTTTCTCCAGGCGTTCCAAGGTGGGAAGCTTCATCTaGCTCTACAAGGAAACATTCTGTTTCAACTTCTGGATCGATGTC | + |
|
Preference number: 5 (lower is better) Translates to: VEFIFSRRSKVGSFI*LYKETFCFNFWIDV Trigger: GACATCGATCCAGAAGTTGAAACAGAATGTTTCCTTGTAGAGCCAGATGAAGCTTCCCACCTTGGAACGCCTGGAGAAAATAAACTCAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS-3UTR CAA 90 bp | AGCATCCCACACACAGCTGTGATGGGGCTCTCTATTGTTCTGTCTTCATTTAAGTTTAGGAAGAGGTGTTaGAAGGCTATAGTGTTCTCC | + |
|
Preference number: 5 (lower is better) Translates to: SIPHTAVMGLSIVLSSFKFRKRC*KAIVFS Trigger: GGAGAACACTATAGCCTTCAAACACCTCTTCCTAAA...CTTAAATGAAGACAGAACAATAGAGAGCCCCATCACAGCTGTGTGTGGGATGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS-3UTR CAA 90 bp | CCCATTAGAGAACTACAAAATGTAGAGCCTAATTCTGTGCCTTTTCAAGCTACAGTGTGTTCTTCTGAATaGATCCAGACACATGCCAGT | + |
|
Preference number: 5 (lower is better) Translates to: PIRELQNVEPNSVPFQATVCSSE*IQTHAS Trigger: ACTGGCATGTGTCTGGATCAATTCAGAAGAACACAC...TGTAGCTTGAAAAGGCACAGAATTAGGCTCTACATTTTGTAGTTCTCTAATGGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS-3UTR CAA 90 bp | TCTCCACTTAATTTATTGAGGCAGGTTCTCTCCATTAAACCCAGAGCTCTCCAACAGTCTTTGCATTCTTaGATAGAAATGTCGTTGTCT | + |
|
Preference number: 5 (lower is better) Translates to: SPLNLLRQVLSIKPRALQQSLHS*IEMSLS Trigger: AGACAACGACATTTCTATCAAAGAATGCAAAGACTG...TTGGAGAGCTCTGGGTTTAATGGAGAGAACCTGCCTCAATAAATTAAGTGGAGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS TCA 90 bp | ATCATAGCTTGTGAGACTCTTGGCTTGGATTTCCATTTTCAGAACTaGTCCAACGATTGTCAATATGTCACTAATGATGATCATAATGTA | + |
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Preference number: 5 (lower is better) Translates to: IIACETLGLDFHFQN*SNDCQYVTNDDHNV Trigger: TACATTATGATCATCATTAGTGACATATTGACAATCGTTGGATCAGTTCTGAAAATGGAAATCCAAGCCAAGAGTCTCACAAGCTATGAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS GCA 72 bp | GAAGCTGCTCTGACGGGGACGAGCTCGGGTGGAAAGTaGAGGGGCTTTCATCTTGGCGAGCTCTGCAGCTGC | + |
|
Preference number: 6 (lower is better) Translates to: EAALTGTSSGGK*RGFHLGELCSC Trigger: GCAGCTGCAGAGCTCGCCAAGATGAAAGCCCCTGCACTTTCCACCCGAGCTCGTCCCCGTCAGAGCAGCTTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000039450.5 ENSMUST00000140214.3 |
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| CDS CAA 72 bp | GGACGAGCTCGGGTGGAAAGTGCAGGGGCTTTCATCTaGGCGAGCTCTGCAGCTGCTAACCAGCACCTCGGG | + |
|
Preference number: 6 (lower is better) Translates to: GRARVESAGAFI*ASSAAANQHLG Trigger: CCCGAGGTGCTGGTTAGCAGCTGCAGAGCTCGCCAAGATGAAAGCCCCTGCACTTTCCACCCGAGCTCGTCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000039450.5 ENSMUST00000140214.3 |
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| CDS CCA 72 bp | GACGAGCTCGGGTGGAAAGTGCAGGGGCTTTCATCTTaGCGAGCTCTGCAGCTGCTAACCAGCACCTCGGGA | + |
|
Preference number: 6 (lower is better) Translates to: DELGWKVQGLSS*RALQLLTSTSG Trigger: TCCCGAGGTGCTGGTTAGCAGCTGCAGAGCTCGCCAAGATGAAAGCCCCTGCACTTTCCACCCGAGCTCGTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000039450.5 ENSMUST00000140214.3 |
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| CDS CCA 72 bp | TCTAAGAGAAGCTGCTCTGACGGGGACGAGCTCGGGTaGAAAGTGCAGGGGCTTTCATCTTGGCGAGCTCTG | + |
|
Preference number: 6 (lower is better) Translates to: SKRSCSDGDELG*KVQGLSSWRAL Trigger: CAGAGCTCGCCAAGATGAAAGCCCCTGCACTTTCCACCCGAGCTCGTCCCCGTCAGAGCAGCTTCTCTTAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000039450.5 ENSMUST00000140214.3 |
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| CDS GCA 72 bp | TTGAGTTTCCGCCTCATCTGGTCTTCTAAGAGAAGCTaGTCTGACGGGGACGAGCTCGGGTGGAAAGTGCAG | + |
|
Preference number: 6 (lower is better) Translates to: LSFRLIWSSKRS*SDGDELGWKVQ Trigger: CTGCACTTTCCACCCGAGCTCGTCCCCGTCAGAGCAGCTTCTCTTAGAAGACCAGATGAGGCGGAAACTCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000039450.5 ENSMUST00000140214.3 |
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| CDS GCA 72 bp | AGCGCAGCAACAGAACCTCATGACGTTGGGCAGCGCTaGCTGGAGGGTCAGAATAAGGAGATTGTACTTCGC | + |
|
Preference number: 6 (lower is better) Translates to: SAATEPHDVGQR*LEGQNKEIVLR Trigger: GCGAAGTACAATCTCCTTATTCTGACCCTCCAGGCAGCGCTGCCCAACGTCATGAGGTTCTGTTGCTGCGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS CAA 72 bp | GATGTCAAAGGTGTCGTTCCCGGGGCAGATGGTTCCTaGCCTGTAGAAGTGCTGACAGATTGCCATCGCCGA | + |
|
Preference number: 6 (lower is better) Translates to: DVKGVVPGADGS*PVEVLTDCHRR Trigger: TCGGCGATGGCAATCTGTCAGCACTTCTACAGGCAAGGAACCATCTGCCCCGGGAACGACACCTTTGACATC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS CCA 72 bp | CTGGATCGATGTCAAAGGTGTCGTTCCCGGGGCAGATaGTTCCTTGCCTGTAGAAGTGCTGACAGATTGCCA | + |
|
Preference number: 6 (lower is better) Translates to: LDRCQRCRSRGR*FLACRSADRLP Trigger: TGGCAATCTGTCAGCACTTCTACAGGCAAGGAACCATCTGCCCCGGGAACGACACCTTTGACATCGATCCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS CAA 90 bp | TTCTGGATCGATGTCAAAGGTGTCGTTCCCGGGGCAGATGGTTCCTaGCCTGTAGAAGTGCTGACAGATTGCCATCGCCGACTGCTTAGT | + |
|
Preference number: 6 (lower is better) Translates to: FWIDVKGVVPGADGS*PVEVLTDCHRRLLS Trigger: ACTAAGCAGTCGGCGATGGCAATCTGTCAGCACTTCTACAGGCAAGGAACCATCTGCCCCGGGAACGACACCTTTGACATCGATCCAGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS CCA 72 bp | CAGCAACAGAACCTCATGACGTTGGGCAGCGCTGCCTaGAGGGTCAGAATAAGGAGATTGTACTTCGCAAAG | + |
|
Preference number: 6 (lower is better) Translates to: QQQNLMTLGSAA*RVRIRRLYFAK Trigger: CTTTGCGAAGTACAATCTCCTTATTCTGACCCTCCAGGCAGCGCTGCCCAACGTCATGAGGTTCTGTTGCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS CAA 72 bp | CAGTCAGGAAGCTCCTGGTGTCGAACTGTCTGCAGATaGATGGCTTTGAGCTTAAACTGGAGCTCCACCGTC | + |
|
Preference number: 6 (lower is better) Translates to: QSGSSWCRTVCR*MALSLNWSSTV Trigger: GACGGTGGAGCTCCAGTTTAAGCTCAAAGCCATCAATCTGCAGACAGTTCGACACCAGGAGCTTCCTGACTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS CAA 90 bp | CAGTCAGGAAGCTCCTGGTGTCGAACTGTCTGCAGATTGATGGCTTaGAGCTTAAACTGGAGCTCCACCGTCAGAAGTCTGTGGAAGTCC | + |
|
Preference number: 6 (lower is better) Translates to: QSGSSWCRTVCRLMA*SLNWSSTVRSLWKS Trigger: GGACTTCCACAGACTTCTGACGGTGGAGCTCCAGTTTAAGCTCAAAGCCATCAATCTGCAGACAGTTCGACACCAGGAGCTTCCTGACTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS CAA 90 bp | AACTGGAGCTCCACCGTCAGAAGTCTGTGGAAGTCCAGGCTCAGGTaGAGTTTATTTTCTCCAGGCGTTCCAAGGTGGGAAGCTTCATCT | + |
|
Preference number: 6 (lower is better) Translates to: NWSSTVRSLWKSRLR*SLFSPGVPRWEASS Trigger: AGATGAAGCTTCCCACCTTGGAACGCCTGGAGAAAATAAACTCAACCTGAGCCTGGACTTCCACAGACTTCTGACGGTGGAGCTCCAGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS TCA 72 bp | AAGACCCCTAATCACAGACCTGGCACACAGCACCAGTaGGGCCAAGCAGGTCAGAATGACAAAGGCATCAAA | + |
|
Preference number: 6 (lower is better) Translates to: KTPNHRPGTQHQ*GQAGQNDKGIK Trigger: TTTGATGCCTTTGTCATTCTGACCTGCTTGGCCTCACTGGTGCTGTGTGCCAGGTCTGTGATTAGGGGTCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS GCA 72 bp | GCAGATGGTTCCTTGCCTGTAGAAGTGCTGACAGATTaGCATCGCCGACTGCTTAGTCCCCTTGTTCTCATA | + |
|
Preference number: 6 (lower is better) Translates to: ADGSLPVEVLTD*HRRLLSPLVLI Trigger: TATGAGAACAAGGGGACTAAGCAGTCGGCGATGGCAATCTGTCAGCACTTCTACAGGCAAGGAACCATCTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS CCA 72 bp | CGAACTGTCTGCAGATTGATGGCTTTGAGCTTAAACTaGAGCTCCACCGTCAGAAGTCTGTGGAAGTCCAGG | + |
|
Preference number: 6 (lower is better) Translates to: RTVCRLMALSLN*SSTVRSLWKSR Trigger: CCTGGACTTCCACAGACTTCTGACGGTGGAGCTCCAGTTTAAGCTCAAAGCCATCAATCTGCAGACAGTTCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS CAA 72 bp | AGCTCCTGGTGTCGAACTGTCTGCAGATTGATGGCTTaGAGCTTAAACTGGAGCTCCACCGTCAGAAGTCTG | + |
|
Preference number: 6 (lower is better) Translates to: SSWCRTVCRLMA*SLNWSSTVRSL Trigger: CAGACTTCTGACGGTGGAGCTCCAGTTTAAGCTCAAAGCCATCAATCTGCAGACAGTTCGACACCAGGAGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS CAA 90 bp | GGAGGGTCATCTTCTAATCTGTATTTTCCGGAGTTGGGGAGGTCTTaGCATTCCGCTATAAACTTTCGAAGTTCCGTCTCTGGGAAGCCA | + |
|
Preference number: 6 (lower is better) Translates to: GGSSSNLYFPELGRS*HSAINFRSSVSGKP Trigger: TGGCTTCCCAGAGACGGAACTTCGAAAGTTTATAGCGGAATGCAAAGACCTCCCCAACTCCGGAAAATACAGATTAGAAGATGACCCTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS CAA 72 bp | CCCGGAGGGTCATCTTCTAATCTGTATTTTCCGGAGTaGGGGAGGTCTTTGCATTCCGCTATAAACTTTCGA | + |
|
Preference number: 6 (lower is better) Translates to: PGGSSSNLYFPE*GRSLHSAINFR Trigger: TCGAAAGTTTATAGCGGAATGCAAAGACCTCCCCAACTCCGGAAAATACAGATTAGAAGATGACCCTCCGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS CAA 90 bp | AGTAAAGAACCCGGAGGGTCATCTTCTAATCTGTATTTTCCGGAGTaGGGGAGGTCTTTGCATTCCGCTATAAACTTTCGAAGTTCCGTC | + |
|
Preference number: 6 (lower is better) Translates to: SKEPGGSSSNLYFPE*GRSLHSAINFRSSV Trigger: GACGGAACTTCGAAAGTTTATAGCGGAATGCAAAGACCTCCCCAACTCCGGAAAATACAGATTAGAAGATGACCCTCCGGGTTCTTTACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS CCA 72 bp | ATTTTCTCCAGGCGTTCCAAGGTGGGAAGCTTCATCTaGCTCTACAAGGAAACATTCTGTTTCAACTTCTGG | + |
|
Preference number: 6 (lower is better) Translates to: IFSRRSKVGSFI*LYKETFCFNFW Trigger: CCAGAAGTTGAAACAGAATGTTTCCTTGTAGAGCCAGATGAAGCTTCCCACCTTGGAACGCCTGGAGAAAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS CCA 72 bp | CTCAGGTTGAGTTTATTTTCTCCAGGCGTTCCAAGGTaGGAAGCTTCATCTGGCTCTACAAGGAAACATTCT | + |
|
Preference number: 6 (lower is better) Translates to: LRLSLFSPGVPR*EASSGSTRKHS Trigger: AGAATGTTTCCTTGTAGAGCCAGATGAAGCTTCCCACCTTGGAACGCCTGGAGAAAATAAACTCAACCTGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS CCA 72 bp | TTTGCATTCCGCTATAAACTTTCGAAGTTCCGTCTCTaGGAAGCCATCTTGCTGGTAGTGCTTAATTGTTTC | + |
|
Preference number: 6 (lower is better) Translates to: FAFRYKLSKFRL*EAILLVVLNCF Trigger: GAAACAATTAAGCACTACCAGCAAGATGGCTTCCCAGAGACGGAACTTCGAAAGTTTATAGCGGAATGCAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS CAA 72 bp | TCTTCTAATCTGTATTTTCCGGAGTTGGGGAGGTCTTaGCATTCCGCTATAAACTTTCGAAGTTCCGTCTCT | + |
|
Preference number: 6 (lower is better) Translates to: SSNLYFPELGRS*HSAINFRSSVS Trigger: AGAGACGGAACTTCGAAAGTTTATAGCGGAATGCAAAGACCTCCCCAACTCCGGAAAATACAGATTAGAAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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| CDS TCA 72 bp | ATGTCGTTGTCTAAGCTTATTTTGATTCTTCCACTGTaGGCCTTGTTGTCGAATGTTATAGTCAGCGTAAAG | + |
|
Preference number: 6 (lower is better) Translates to: MSLSKLILILPL*ALLSNVIVSVK Trigger: CTTTACGCTGACTATAACATTCGACAACAAGGCTCACAGTGGAAGAATCAAAATAAGCTTAGACAACGACAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039450.5 |
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