RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MCM9 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000058298

Ensembl transcript IDs: ENSMUST00000075540.8, ENSMUST00000218549.3, ENSMUST00000219547.2, ENSMUST00000219838.3, ENSMUST00000220007.2, ENSMUST00000237608.2

Found 532 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GTCTATGCGGACTGTCAACGTGGCTCAGTGGGTAAAGGTGCTTGCTaGCAAGCCTACTATTTCATTCAATTCAATACCCAGGACTCACAT +
Preference number: 1 (lower is better)
Translates to: VYADCQRGSVGKGAC*QAYYFIQFNTQDSH
Trigger: ATGTGAGTCCTGGGTATTGAATTGAATGAAATAGTAGGCTTGGCAGCAAGCACCTTTACCCACTGAGCCACGTTGACAGTCCGCATAGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
3UTR GCA 90 bp AAAGTCTATGCGGACTGTCAACGTGGCTCAGTGGGTAAAGGTGCTTaGTGCCAAGCCTACTATTTCATTCAATTCAATACCCAGGACTCA +
Preference number: 1 (lower is better)
Translates to: KVYADCQRGSVGKGA*CQAYYFIQFNTQDS
Trigger: TGAGTCCTGGGTATTGAATTGAATGAAATAGTAGGCTTGGCAGCAAGCACCTTTACCCACTGAGCCACGTTGACAGTCCGCATAGACTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
3UTR GCA 90 bp ACAGTTGTTCATTCACAACCTGGTCTGACCCTTCATTTCTGTTACTaGTTTACCAAGAAAGTCTATGCGGACTGTCAACGTGGCTCAGTG +
Preference number: 1 (lower is better)
Translates to: TVVHSQPGLTLHFCY*FTKKVYADCQRGSV
Trigger: CACTGAGCCACGTTGACAGTCCGCATAGACTTTCTTGGTAAAGCAGTAACAGAAATGAAGGGTCAGACCAGGTTGTGAATGAACAACTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
3UTR CCA 90 bp ACTGCTTTACCAAGAAAGTCTATGCGGACTGTCAACGTGGCTCAGTaGGTAAAGGTGCTTGCTGCCAAGCCTACTATTTCATTCAATTCA +
Preference number: 1 (lower is better)
Translates to: TALPRKSMRTVNVAQ*VKVLAAKPTISFNS
Trigger: TGAATTGAATGAAATAGTAGGCTTGGCAGCAAGCACCTTTACCCACTGAGCCACGTTGACAGTCCGCATAGACTTTCTTGGTAAAGCAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
3UTR TCA 90 bp AAATGCAAAGCAAACAGAAAGCACTTAGCTGCCTTGTTAGATTTCTaGGTGCCACCATCCTGCCATTTGGTCTGGATATGTGAGAGAAGA +
Preference number: 1 (lower is better)
Translates to: KCKANRKHLAALLDF*VPPSCHLVWICERR
Trigger: TCTTCTCTCACATATCCAGACCAAATGGCAGGATGGTGGCACTCAGAAATCTAACAAGGCAGCTAAGTGCTTTCTGTTTGCTTTGCATTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
3UTR TCA 90 bp CATATCCCAACCCAACGTTCTTGGTTTTATAAAAAGACAAACAGATaGGAAGCTATCAGGGATCACGTTTCCATACTGATGCCATTGCAG +
Preference number: 1 (lower is better)
Translates to: HIPTQRSWFYKKTNR*EAIRDHVSILMPLQ
Trigger: CTGCAATGGCATCAGTATGGAAACGTGATCCCTGATAGCTTCTCATCTGTTTGTCTTTTTATAAAACCAAGAACGTTGGGTTGGGATATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
3UTR TCA 90 bp AGTGAAGGAAGAGTGCTAATCCACTTTATATTATCACTGGCACATTaGAGCCCTGGCCCTTTATGTTATACTTCCTTACTAATAGTGGCC +
Preference number: 1 (lower is better)
Translates to: SEGRVLIHFILSLAH*SPGPLCYTSLLIVA
Trigger: GGCCACTATTAGTAAGGAAGTATAACATAAAGGGCCAGGGCTTCAATGTGCCAGTGATAATATAAAGTGGATTAGCACTCTTCCTTCACT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
3UTR GCA 90 bp GCAATGCAAGTATACATTAGGTTTTCCATAAAAGTAGCCATCTGCTaGCCTTACTGTGTGCAGCCTGATTATAACAGATTACAAGAGTGC +
Preference number: 1 (lower is better)
Translates to: AMQVYIRFSIKVAIC*PYCVQPDYNRLQEC
Trigger: GCACTCTTGTAATCTGTTATAATCAGGCTGCACACAGTAAGGGCAGCAGATGGCTACTTTTATGGAAAACCTAATGTATACTTGCATTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
3UTR CCA 90 bp TCTAAGTGTGTAGGGGTAGCTCTTTATAGGCCAACCCTTCTCTTTTaGTATTGTCAATTCACAGAGCCCATCCAATCAACACTTACTAAT +
Preference number: 1 (lower is better)
Translates to: SKCVGVALYRPTLLF*YCQFTEPIQSTLTN
Trigger: ATTAGTAAGTGTTGATTGGATGGGCTCTGTGAATTGACAATACCAAAAGAGAAGGGTTGGCCTATAAAGAGCTACCCCTACACACTTAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
3UTR CCA 90 bp TCAGAATCTGAGGAGAAGCATGCATACAGTTGTTCATTCACAACCTaGTCTGACCCTTCATTTCTGTTACTGCTTTACCAAGAAAGTCTA +
Preference number: 1 (lower is better)
Translates to: SESEEKHAYSCSFTT*SDPSFLLLLYQESL
Trigger: TAGACTTTCTTGGTAAAGCAGTAACAGAAATGAAGGGTCAGACCAGGTTGTGAATGAACAACTGTATGCATGCTTCTCCTCAGATTCTGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
3UTR CCA 90 bp AAGAGTGCTAATCCACTTTATATTATCACTGGCACATTGAAGCCCTaGCCCTTTATGTTATACTTCCTTACTAATAGTGGCCTGAAAGAC +
Preference number: 1 (lower is better)
Translates to: KSANPLYIITGTLKP*PFMLYFLTNSGLKD
Trigger: GTCTTTCAGGCCACTATTAGTAAGGAAGTATAACATAAAGGGCCAGGGCTTCAATGTGCCAGTGATAATATAAAGTGGATTAGCACTCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
3UTR-3UTR CCA 90 bp ATGAAAGGCAAGGCGTGCGTGCTGGCACAAGGGGAACAAATCCAAGGGCCAGTGTACTTTGAAGGCACTTaGTTGGACTGGGGAAGACAA +
Preference number: 2 (lower is better)
Translates to: MKGKACVLAQGEQIQGPVYFEGT*LDWGRQ
Trigger: TTGTCTTCCCCAGTCCAACCAAGTGCCTTCAAAGTA...CACTGGCCCTTGGATTTGTTCCCCTTGTGCCAGCACGCACGCCTTGCCTTTCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
3UTR-3UTR CCA 90 bp GAAAGGCAAGGCGTGCGTGCTGGCACAAGGGGAACAAATCCAAGGGCCAGTGTTCACCATCCTGCCATTTaGTCTGGATATGTGAGAGAA +
Preference number: 2 (lower is better)
Translates to: ERQGVRAGTRGTNPRASVHHPAI*SGYVRE
Trigger: TTCTCTCACATATCCAGACCAAATGGCAGGATGGTG...AACACTGGCCCTTGGATTTGTTCCCCTTGTGCCAGCACGCACGCCTTGCCTTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
3UTR-3UTR TCA 90 bp TGCCATTGCAGATGTGACAGGGCTACAGCTGGCCTTCCGGAGCTCGCTTCTCTTACTGAAGGTAAGCTCTaGGAGCAAAAAGGAATGAAA +
Preference number: 2 (lower is better)
Translates to: CHCRCDRATAGLPELASLTEGKL*EQKGMK
Trigger: TTTCATTCCTTTTTGCTCTCAGAGCTTACCTTCAGT...AAGAGAAGCGAGCTCCGGAAGGCCAGCTGTAGCCCTGTCACATCTGCAATGGCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
3UTR-3UTR CCA 90 bp CGTGCTGGCACAAGGGGAACAAATCCAAGGGCCAGTGTTTCTGTAAGCTACGGTTACTTTGAAGGCACTTaGTTGGACTGGGGAAGACAA +
Preference number: 2 (lower is better)
Translates to: RAGTRGTNPRASVSVSYGYFEGT*LDWGRQ
Trigger: TTGTCTTCCCCAGTCCAACCAAGTGCCTTCAAAGTA...ACCGTAGCTTACAGAAACACTGGCCCTTGGATTTGTTCCCCTTGTGCCAGCACG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
3UTR-3UTR CCA 90 bp ATGAAAGGCAAGGCGTGCGTGCTGGCACAAGGGGAACAAATCCAAGGGCCAGTGGCATTCAGTACATATTaGGCAGGAAATGCAAAGCAA +
Preference number: 2 (lower is better)
Translates to: MKGKACVLAQGEQIQGPVAFSTY*AGNAKQ
Trigger: TTGCTTTGCATTTCCTGCCCAATATGTACTGAATGC...CACTGGCCCTTGGATTTGTTCCCCTTGTGCCAGCACGCACGCCTTGCCTTTCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
3UTR CAA 90 bp TGGCCTGAAAGACGGCCTAGGCTTAGTGCTTGGCATGCCACAGGATaGGTTGGCAATCATTTCATGTCACATCAGCCACAAGGATTTCTA +
Preference number: 2 (lower is better)
Translates to: WPERRPRLSAWHATG*VGNHFMSHQPQGFL
Trigger: TAGAAATCCTTGTGGCTGATGTGACATGAAATGATTGCCAACCAATCCTGTGGCATGCCAAGCACTAAGCCTAGGCCGTCTTTCAGGCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
3UTR-3UTR GCA 90 bp ATGAAAGGCAAGGCGTGCGTGCTGGCACAAGGGGAACAAATCCAAGGGCCAGTGTGTCCAATGAAAGCATaGATCTTGAAGACAGAAAAC +
Preference number: 2 (lower is better)
Translates to: MKGKACVLAQGEQIQGPVCPMKA*ILKTEN
Trigger: GTTTTCTGTCTTCAAGATGCATGCTTTCATTGGACA...CACTGGCCCTTGGATTTGTTCCCCTTGTGCCAGCACGCACGCCTTGCCTTTCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
3UTR-3UTR CCA 90 bp GATGCCATTGCAGATGTGACAGGGCTACAGCTGGCCTTCCGGAGCTCGCTTCTCAAAACTAGAACGTCCTaGATGTTAAGTCATCTTTTG +
Preference number: 2 (lower is better)
Translates to: DAIADVTGLQLAFRSSLLKTRTS*MLSHLL
Trigger: CAAAAGATGACTTAACATCCAGGACGTTCTAGTTTT...GAGAAGCGAGCTCCGGAAGGCCAGCTGTAGCCCTGTCACATCTGCAATGGCATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
3UTR-3UTR TCA 90 bp GGAGAGCCATGGGATGCAGGTTATGCGGTGCCTTCACATCTAAGCTTTTATACTTTATCACTGGCACATTaGAGCCCTGGCCCTTTATGT +
Preference number: 2 (lower is better)
Translates to: GEPWDAGYAVPSHLSFYTLSLAH*SPGPLC
Trigger: ACATAAAGGGCCAGGGCTTCAATGTGCCAGTGATAA...AGTATAAAAGCTTAGATGTGAAGGCACCGCATAACCTGCATCCCATGGCTCTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
3UTR-3UTR GCA 90 bp ATTTCTGAGTGCCACCATCCTGCCATTTGGTCTGGATATGTGAGAGAAGAAGCTGTACTACACACTGTGTaGACACCTGTAGCCACTTGT +
Preference number: 2 (lower is better)
Translates to: ISECHHPAIWSGYVREEAVLHTV*TPVATC
Trigger: ACAAGTGGCTACAGGTGTGCACACAGTGTGTAGTAC...AGCTTCTTCTCTCACATATCCAGACCAAATGGCAGGATGGTGGCACTCAGAAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
3UTR-3UTR GCA 90 bp CAAAGCAAACAGAAAGCACTTAGCTGCCTTGTTAGATTTCTGAGTGCCACCATCGTACTACACACTGTGTaGACACCTGTAGCCACTTGT +
Preference number: 2 (lower is better)
Translates to: QSKQKALSCLVRFLSATIVLHTV*TPVATC
Trigger: ACAAGTGGCTACAGGTGTGCACACAGTGTGTAGTAC...GATGGTGGCACTCAGAAATCTAACAAGGCAGCTAAGTGCTTTCTGTTTGCTTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
3UTR-3UTR CCA 90 bp CAGGGTTTTTCTAGGCCACCCCAGTGCATCTTACCACAACTTGTGTTACACCAGTGGTTAGCTTTATTCTaGCTAGCTACTTTACGAAGC +
Preference number: 2 (lower is better)
Translates to: QGFSRPPQCILPQLVLHQWLALF*LATLRS
Trigger: GCTTCGTAAAGTAGCTAGCCAGAATAAAGCTAACCA...CTGGTGTAACACAAGTTGTGGTAAGATGCACTGGGGTGGCCTAGAAAAACCCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000218549.3
3UTR-3UTR GCA 90 bp CAGGGTTTTTCTAGGCCACCCCAGTGCATCTTACCACAACTTGTGTTACACCAGGCATGTCTTACCATTTaGAGTTGTATTACCCCATAT +
Preference number: 2 (lower is better)
Translates to: QGFSRPPQCILPQLVLHQACLTI*SCITPY
Trigger: ATATGGGGTAATACAACTGCAAATGGTAAGACATGC...CTGGTGTAACACAAGTTGTGGTAAGATGCACTGGGGTGGCCTAGAAAAACCCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000218549.3
3UTR-3UTR CCA 90 bp CACCATCCTGCCATTTGGTCTGGATATGTGAGAGAAGAAGCTCAGAATAGAACTTACTTTGAAGGCACTTaGTTGGACTGGGGAAGACAA +
Preference number: 2 (lower is better)
Translates to: HHPAIWSGYVREEAQNRTYFEGT*LDWGRQ
Trigger: TTGTCTTCCCCAGTCCAACCAAGTGCCTTCAAAGTA...AGTTCTATTCTGAGCTTCTTCTCTCACATATCCAGACCAAATGGCAGGATGGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
3UTR-3UTR CCA 90 bp CAAAGCAAACAGAAAGCACTTAGCTGCCTTGTTAGATTTCTGAGTGCCACCATCTACTTTGAAGGCACTTaGTTGGACTGGGGAAGACAA +
Preference number: 2 (lower is better)
Translates to: QSKQKALSCLVRFLSATIYFEGT*LDWGRQ
Trigger: TTGTCTTCCCCAGTCCAACCAAGTGCCTTCAAAGTA...GATGGTGGCACTCAGAAATCTAACAAGGCAGCTAAGTGCTTTCTGTTTGCTTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
3UTR-3UTR CCA 90 bp TGCCAAGCCTACTATTTCATTCAATTCAATACCCAGGACTCACATGGTAGAAACCCTAGGCTTAGTGCTTaGCATGCCACAGGATTGGTT +
Preference number: 2 (lower is better)
Translates to: CQAYYFIQFNTQDSHGRNPRLSA*HATGLV
Trigger: AACCAATCCTGTGGCATGCCAAGCACTAAGCCTAGG...GTTTCTACCATGTGAGTCCTGGGTATTGAATTGAATGAAATAGTAGGCTTGGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
3UTR-3UTR GCA 90 bp CAGGGTTTTTCTAGGCCACCCCAGTGCATCTTACCACAACTTGTGTTACACCAGTTCAGTTTACAGAAATaGCGAACTTACAAGGGTAAT +
Preference number: 2 (lower is better)
Translates to: QGFSRPPQCILPQLVLHQFSLQK*RTYKGN
Trigger: ATTACCCTTGTAAGTTCGGCATTTCTGTAAACTGAA...CTGGTGTAACACAAGTTGTGGTAAGATGCACTGGGGTGGCCTAGAAAAACCCTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000218549.3
3UTR CAA 90 bp CGGCAAGTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATaGGGCAGGAAATGCAAAGCAAACAGAAAGCACTTAGCTGCCTTG +
Preference number: 2 (lower is better)
Translates to: RQVIPNVNKHRIQYI*GRKCKANRKHLAAL
Trigger: CAAGGCAGCTAAGTGCTTTCTGTTTGCTTTGCATTTCCTGCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGACTTGCCG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
3UTR-3UTR GCA 90 bp ACTCACATGGTAGAAACTAATTCTCCCACAAGCTGTCATCTAACTTGCATATATAAAGTAGCCATCTGCTaGCCTTACTGTGTGCAGCCT +
Preference number: 2 (lower is better)
Translates to: THMVETNSPTSCHLTCIYKVAIC*PYCVQP
Trigger: AGGCTGCACACAGTAAGGGCAGCAGATGGCTACTTT...ATATATGCAAGTTAGATGACAGCTTGTGGGAGAATTAGTTTCTACCATGTGAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
3UTR-3UTR CCA 90 bp TGCCAAGCCTACTATTTCATTCAATTCAATACCCAGGACTCACATGGTAGAAACGGCACATTGAAGCCCTaGCCCTTTATGTTATACTTC +
Preference number: 2 (lower is better)
Translates to: CQAYYFIQFNTQDSHGRNGTLKP*PFMLYF
Trigger: GAAGTATAACATAAAGGGCCAGGGCTTCAATGTGCC...GTTTCTACCATGTGAGTCCTGGGTATTGAATTGAATGAAATAGTAGGCTTGGCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
3UTR-3UTR TCA 90 bp CGCTACATATACATTCTTCTTCTGAGCCATATCCCAACCCAACGTTCTTGGTTTATGAGAAAAACCACATaGTTTCGGCAAGTCATTCCA +
Preference number: 2 (lower is better)
Translates to: RYIYILLLSHIPTQRSWFMRKTT*FRQVIP
Trigger: TGGAATGACTTGCCGAAATCATGTGGTTTTTCTCAT...AAACCAAGAACGTTGGGTTGGGATATGGCTCAGAAGAAGAATGTATATGTAGCG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
3UTR-3UTR CCA 90 bp CGCTACATATACATTCTTCTTCTGAGCCATATCCCAACCCAACGTTCTTGGTTTGCATTCAGTACATATTaGGCAGGAAATGCAAAGCAA +
Preference number: 2 (lower is better)
Translates to: RYIYILLLSHIPTQRSWFAFSTY*AGNAKQ
Trigger: TTGCTTTGCATTTCCTGCCCAATATGTACTGAATGC...AAACCAAGAACGTTGGGTTGGGATATGGCTCAGAAGAAGAATGTATATGTAGCG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
3UTR-3UTR CCA 90 bp TGCCAAGCCTACTATTTCATTCAATTCAATACCCAGGACTCACATGGTAGAAACCCAACCCTTCTCTTTTaGTATTGTCAATTCACAGAG +
Preference number: 2 (lower is better)
Translates to: CQAYYFIQFNTQDSHGRNPTLLF*YCQFTE
Trigger: CTCTGTGAATTGACAATACCAAAAGAGAAGGGTTGG...GTTTCTACCATGTGAGTCCTGGGTATTGAATTGAATGAAATAGTAGGCTTGGCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
3UTR-3UTR CCA 90 bp AAGCATGCATACAGTTGTTCATTCACAACCTGGTCTGACCCTTCATTTCTGTTACTGACATCTTTTGAGTaGGTAAGAAGTAGCAATAAG +
Preference number: 2 (lower is better)
Translates to: KHAYSCSFTTWSDPSFLLLTSFE*VRSSNK
Trigger: CTTATTGCTACTTCTTACCCACTCAAAAGATGTCAG...TAACAGAAATGAAGGGTCAGACCAGGTTGTGAATGAACAACTGTATGCATGCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
3UTR-3UTR CAA 90 bp ATGAAAGGCAAGGCGTGCGTGCTGGCACAAGGGGAACAAATCCAAGGGCCAGTGAACCTGACAAGGGAGTaGGGCTTCGGCAGGGCCACG +
Preference number: 3 (lower is better)
Translates to: MKGKACVLAQGEQIQGPVNLTRE*GFGRAT
Trigger: CGTGGCCCTGCCGAAGCCCAACTCCCTTGTCAGGTT...CACTGGCCCTTGGATTTGTTCCCCTTGTGCCAGCACGCACGCCTTGCCTTTCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
3UTR TCA 72 bp AGGGATCACGTTTCCATACTGATGCCATTGCAGATGTaGCAGGGCTACAGCTGGCCTTCCGGAGCTCGCTTC +
Preference number: 3 (lower is better)
Translates to: RDHVSILMPLQM*QGYSWPSGARF
Trigger: GAAGCGAGCTCCGGAAGGCCAGCTGTAGCCCTGTCACATCTGCAATGGCATCAGTATGGAAACGTGATCCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
3UTR-3UTR CAA 90 bp GAAAGGCAAGGCGTGCGTGCTGGCACAAGGGGAACAAATCCAAGGGCCAGTGTTTTTGAAGGCACTTGGTaGGACTGGGGAAGACAACTG +
Preference number: 3 (lower is better)
Translates to: ERQGVRAGTRGTNPRASVFEGTW*DWGRQL
Trigger: CAGTTGTCTTCCCCAGTCCAACCAAGTGCCTTCAAA...AACACTGGCCCTTGGATTTGTTCCCCTTGTGCCAGCACGCACGCCTTGCCTTTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
3UTR-3UTR CAA 90 bp ATGAAAGGCAAGGCGTGCGTGCTGGCACAAGGGGAACAAATCCAAGGGCCAGTGCCACCATCCTGCCATTaGGTCTGGATATGTGAGAGA +
Preference number: 3 (lower is better)
Translates to: MKGKACVLAQGEQIQGPVPPSCH*VWICER
Trigger: TCTCTCACATATCCAGACCAAATGGCAGGATGGTGG...CACTGGCCCTTGGATTTGTTCCCCTTGTGCCAGCACGCACGCCTTGCCTTTCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
3UTR-3UTR CAA 90 bp ATGAAGATGAACCTGACAAGGGAGTTGGGCTTCGGCAGGGCCACGCACGTACTATTTGAAGGCACTTGGTaGGACTGGGGAAGACAACTG +
Preference number: 3 (lower is better)
Translates to: MKMNLTRELGFGRATHVLFEGTW*DWGRQL
Trigger: CAGTTGTCTTCCCCAGTCCAACCAAGTGCCTTCAAA...TAGTACGTGCGTGGCCCTGCCGAAGCCCAACTCCCTTGTCAGGTTCATCTTCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
3UTR-3UTR CAA 90 bp GATGCCATTGCAGATGTGACAGGGCTACAGCTGGCCTTCCGGAGCTCGCTTCTCCGCATTCAGTACATATaGGGCAGGAAATGCAAAGCA +
Preference number: 3 (lower is better)
Translates to: DAIADVTGLQLAFRSSLLRIQYI*GRKCKA
Trigger: TGCTTTGCATTTCCTGCCCAATATGTACTGAATGCG...GAGAAGCGAGCTCCGGAAGGCCAGCTGTAGCCCTGTCACATCTGCAATGGCATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
3UTR-3UTR CAA 90 bp ATGAAAGGCAAGGCGTGCGTGCTGGCACAAGGGGAACAAATCCAAGGGCCAGTGATGAAAGCATGCATCTaGAAGACAGAAAACCACCAG +
Preference number: 3 (lower is better)
Translates to: MKGKACVLAQGEQIQGPVMKACI*KTENHQ
Trigger: CTGGTGGTTTTCTGTCTTCAAGATGCATGCTTTCAT...CACTGGCCCTTGGATTTGTTCCCCTTGTGCCAGCACGCACGCCTTGCCTTTCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
3UTR CCA 72 bp GACGGCCTAGGCTTAGTGCTTGGCATGCCACAGGATTaGTTGGCAATCATTTCATGTCACATCAGCCACAAG +
Preference number: 3 (lower is better)
Translates to: DGLGLVLGMPQD*LAIISCHISHK
Trigger: CTTGTGGCTGATGTGACATGAAATGATTGCCAACCAATCCTGTGGCATGCCAAGCACTAAGCCTAGGCCGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
3UTR TCA 72 bp CCTTCAGCTCACAGAGATCCACCTGCTTCTGTCTCCTaGGTGCTGACATTAAAGGCGTTCTACTCCATACTC +
Preference number: 3 (lower is better)
Translates to: PSAHRDPPASVS*VLTLKAFYSIL
Trigger: GAGTATGGAGTAGAACGCCTTTAATGTCAGCACTCAGGAGACAGAAGCAGGTGGATCTCTGTGAGCTGAAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
3UTR CCA 72 bp CCAAGAAAGTCTATGCGGACTGTCAACGTGGCTCAGTaGGTAAAGGTGCTTGCTGCCAAGCCTACTATTTCA +
Preference number: 3 (lower is better)
Translates to: PRKSMRTVNVAQ*VKVLAAKPTIS
Trigger: TGAAATAGTAGGCTTGGCAGCAAGCACCTTTACCCACTGAGCCACGTTGACAGTCCGCATAGACTTTCTTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
3UTR GCA 72 bp GTGATGATGCACAGGAGAGCCATGGGATGCAGGTTATaGGGTGCCTTCACATCTAAGCTTTTATACTGCACT +
Preference number: 3 (lower is better)
Translates to: VMMHRRAMGCRL*GAFTSKLLYCT
Trigger: AGTGCAGTATAAAAGCTTAGATGTGAAGGCACCGCATAACCTGCATCCCATGGCTCTCCTGTGCATCATCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
3UTR TCA 72 bp CGCGCAGCTGAAGAGCTAGGTTATGATGGCATTGTTTaGGTTGAGGAAACGTTTCAGAATCTGAGGAGAAGC +
Preference number: 3 (lower is better)
Translates to: RAAEELGYDGIV*VEETFQNLRRS
Trigger: GCTTCTCCTCAGATTCTGAAACGTTTCCTCAACTCAAACAATGCCATCATAACCTAGCTCTTCAGCTGCGCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
3UTR GCA 72 bp GACTGTCAACGTGGCTCAGTGGGTAAAGGTGCTTGCTaGCAAGCCTACTATTTCATTCAATTCAATACCCAG +
Preference number: 3 (lower is better)
Translates to: DCQRGSVGKGAC*QAYYFIQFNTQ
Trigger: CTGGGTATTGAATTGAATGAAATAGTAGGCTTGGCAGCAAGCACCTTTACCCACTGAGCCACGTTGACAGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
3UTR TCA 72 bp GCAAACAGAAAGCACTTAGCTGCCTTGTTAGATTTCTaGGTGCCACCATCCTGCCATTTGGTCTGGATATGT +
Preference number: 3 (lower is better)
Translates to: ANRKHLAALLDF*VPPSCHLVWIC
Trigger: ACATATCCAGACCAAATGGCAGGATGGTGGCACTCAGAAATCTAACAAGGCAGCTAAGTGCTTTCTGTTTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
3UTR GCA 72 bp TTGATTATGGTGATGATGCACAGGAGAGCCATGGGATaGAGGTTATGCGGTGCCTTCACATCTAAGCTTTTA +
Preference number: 3 (lower is better)
Translates to: LIMVMMHRRAMG*RLCGAFTSKLL
Trigger: TAAAAGCTTAGATGTGAAGGCACCGCATAACCTGCATCCCATGGCTCTCCTGTGCATCATCACCATAATCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
3UTR GCA 72 bp ATTATATGCCACCAGGGTTTTTCTAGGCCACCCCAGTaGATCTTACCACAACTTGTGTTACACCAGACTTCT +
Preference number: 3 (lower is better)
Translates to: IICHQGFSRPPQ*ILPQLVLHQTS
Trigger: AGAAGTCTGGTGTAACACAAGTTGTGGTAAGATGCACTGGGGTGGCCTAGAAAAACCCTGGTGGCATATAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000218549.3
3UTR CCA 72 bp ACCTGTAGCCACTTGTATACTTTGAAGGCACTTGGTTaGACTGGGGAAGACAACTGTGACCAGAAAGCTTTT +
Preference number: 3 (lower is better)
Translates to: TCSHLYTLKALG*TGEDNCDQKAF
Trigger: AAAAGCTTTCTGGTCACAGTTGTCTTCCCCAGTCCAACCAAGTGCCTTCAAAGTATACAAGTGGCTACAGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
3UTR TCA 72 bp ACAAGGAAGACTGCCCTCCACCCCATTTCTTATTTTTaGGATATGATCTCTCAACATAGCCTTGGCTGTCCT +
Preference number: 3 (lower is better)
Translates to: TRKTALHPISYF*DMISQHSLGCP
Trigger: AGGACAGCCAAGGCTATGTTGAGAGATCATATCTCAAAAATAAGAAATGGGGTGGAGGGCAGTCTTCCTTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
3UTR GCA 72 bp CATTCACAACCTGGTCTGACCCTTCATTTCTGTTACTaGTTTACCAAGAAAGTCTATGCGGACTGTCAACGT +
Preference number: 3 (lower is better)
Translates to: HSQPGLTLHFCY*FTKKVYADCQR
Trigger: ACGTTGACAGTCCGCATAGACTTTCTTGGTAAAGCAGTAACAGAAATGAAGGGTCAGACCAGGTTGTGAATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
3UTR CCA 72 bp GTAGGGGTAGCTCTTTATAGGCCAACCCTTCTCTTTTaGTATTGTCAATTCACAGAGCCCATCCAATCAACA +
Preference number: 3 (lower is better)
Translates to: VGVALYRPTLLF*YCQFTEPIQST
Trigger: TGTTGATTGGATGGGCTCTGTGAATTGACAATACCAAAAGAGAAGGGTTGGCCTATAAAGAGCTACCCCTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
3UTR-3UTR CAA 90 bp GGATATGTGAGAGAAGAAGCTCAGAATAGAACTCCTCTAGTAAAAACCAAACCATTTGAAGGCACTTGGTaGGACTGGGGAAGACAACTG +
Preference number: 3 (lower is better)
Translates to: GYVREEAQNRTPLVKTKPFEGTW*DWGRQL
Trigger: CAGTTGTCTTCCCCAGTCCAACCAAGTGCCTTCAAA...TGGTTTGGTTTTTACTAGAGGAGTTCTATTCTGAGCTTCTTCTCTCACATATCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
3UTR-3UTR CAA 90 bp TCACACCAACCGCAATTAATTATTCAGCATTTAGGTGATGAAGATGAACCTGACTTTGAAGGCACTTGGTaGGACTGGGGAAGACAACTG +
Preference number: 3 (lower is better)
Translates to: SHQPQLIIQHLGDEDEPDFEGTW*DWGRQL
Trigger: CAGTTGTCTTCCCCAGTCCAACCAAGTGCCTTCAAA...GTCAGGTTCATCTTCATCACCTAAATGCTGAATAATTAATTGCGGTTGGTGTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
3UTR-3UTR CAA 90 bp ATTTCTGAGTGCCACCATCCTGCCATTTGGTCTGGATATGTGAGAGAAGAAGCTCATTCATCCAAAGTATaGATATCACACCAACCGCAA +
Preference number: 3 (lower is better)
Translates to: ISECHHPAIWSGYVREEAHSSKV*ISHQPQ
Trigger: TTGCGGTTGGTGTGATATCAATACTTTGGATGAATG...AGCTTCTTCTCTCACATATCCAGACCAAATGGCAGGATGGTGGCACTCAGAAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
3UTR-3UTR CAA 90 bp TTCGGCAAGTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCACCACCATCCTGCCATTaGGTCTGGATATGTGAGAGA +
Preference number: 3 (lower is better)
Translates to: FGKSFQMLINTAFSTYWAPPSCH*VWICER
Trigger: TCTCTCACATATCCAGACCAAATGGCAGGATGGTGG...TGCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGACTTGCCGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
3UTR CCA 72 bp GAGGAGAAGCATGCATACAGTTGTTCATTCACAACCTaGTCTGACCCTTCATTTCTGTTACTGCTTTACCAA +
Preference number: 3 (lower is better)
Translates to: EEKHAYSCSFTT*SDPSFLLLLYQ
Trigger: TTGGTAAAGCAGTAACAGAAATGAAGGGTCAGACCAGGTTGTGAATGAACAACTGTATGCATGCTTCTCCTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
3UTR-3UTR CAA 90 bp CAAAGCAAACAGAAAGCACTTAGCTGCCTTGTTAGATTTCTGAGTGCCACCATCCATTCATCCAAAGTATaGATATCACACCAACCGCAA +
Preference number: 3 (lower is better)
Translates to: QSKQKALSCLVRFLSATIHSSKV*ISHQPQ
Trigger: TTGCGGTTGGTGTGATATCAATACTTTGGATGAATG...GATGGTGGCACTCAGAAATCTAACAAGGCAGCTAAGTGCTTTCTGTTTGCTTTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
3UTR-3UTR CAA 90 bp CGCTACATATACATTCTTCTTCTGAGCCATATCCCAACCCAACGTTCTTGGTTTATGAAAGCATGCATCTaGAAGACAGAAAACCACCAG +
Preference number: 3 (lower is better)
Translates to: RYIYILLLSHIPTQRSWFMKACI*KTENHQ
Trigger: CTGGTGGTTTTCTGTCTTCAAGATGCATGCTTTCAT...AAACCAAGAACGTTGGGTTGGGATATGGCTCAGAAGAAGAATGTATATGTAGCG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
3UTR TCA 72 bp AAGAAACTAGCATGCAGTGATTTTAGGCATTATGTCTaGATTATAGTTACAAGGAAGACTGCCCTCCACCCC +
Preference number: 3 (lower is better)
Translates to: KKLACSDFRHYV*IIVTRKTALHP
Trigger: GGGGTGGAGGGCAGTCTTCCTTGTAACTATAATTCAGACATAATGCCTAAAATCACTGCATGCTAGTTTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
3UTR CCA 72 bp TTACAAGAGTGCCACAGGCCACTGACATCTTTTGAGTaGGTAAGAAGTAGCAATAAGTCTCTACAATTGCAA +
Preference number: 3 (lower is better)
Translates to: LQECHRPLTSFE*VRSSNKSLQLQ
Trigger: TTGCAATTGTAGAGACTTATTGCTACTTCTTACCCACTCAAAAGATGTCAGTGGCCTGTGGCACTCTTGTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
3UTR-3UTR CAA 90 bp GGTTCAGATCTGCTCTTTCTTTCAGTTTACAGAAATGCCGAACTTACAAGGGTAAGCATGTCTTACCATTaGCAGTTGTATTACCCCATA +
Preference number: 3 (lower is better)
Translates to: GSDLLFLSVYRNAELTRVSMSYH*QLYYPI
Trigger: TATGGGGTAATACAACTGCAAATGGTAAGACATGCT...TACCCTTGTAAGTTCGGCATTTCTGTAAACTGAAAGAAAGAGCAGATCTGAACC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218549.3
3UTR TCA 72 bp ATGGCATTGTTTGAGTTGAGGAAACGTTTCAGAATCTaGGGAGAAGCATGCATACAGTTGTTCATTCACAAC +
Preference number: 3 (lower is better)
Translates to: MALFELRKRFRI*GEACIQLFIHN
Trigger: GTTGTGAATGAACAACTGTATGCATGCTTCTCCTCAGATTCTGAAACGTTTCCTCAACTCAAACAATGCCAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
3UTR GCA 72 bp TGGTTCAGATCTGCTCTTTCTTTCAGTTTACAGAAATaGCGAACTTACAAGGGTAATTTAGAAAGGCCTGGT +
Preference number: 3 (lower is better)
Translates to: WFRSALSFSLQK*RTYKGNLERPG
Trigger: ACCAGGCCTTTCTAAATTACCCTTGTAAGTTCGGCATTTCTGTAAACTGAAAGAAAGAGCAGATCTGAACCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218549.3
3UTR CCA 72 bp GTCTTACCATTTGCAGTTGTATTACCCCATATCCTCTaGCTCTCATTAACGTGTAAGATCAGGGTATTTTCT +
Preference number: 3 (lower is better)
Translates to: VLPFAVVLPHIL*LSLTCKIRVFS
Trigger: AGAAAATACCCTGATCTTACACGTTAATGAGAGCCAGAGGATATGGGGTAATACAACTGCAAATGGTAAGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218549.3
3UTR-3UTR CAA 90 bp CTTCTTCTGAGCCATATCCCAACCCAACGTTCTTGGTTTTATAAAAAGACAAACCATTCATCCAAAGTATaGATATCACACCAACCGCAA +
Preference number: 3 (lower is better)
Translates to: LLLSHIPTQRSWFYKKTNHSSKV*ISHQPQ
Trigger: TTGCGGTTGGTGTGATATCAATACTTTGGATGAATG...GTTTGTCTTTTTATAAAACCAAGAACGTTGGGTTGGGATATGGCTCAGAAGAAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
3UTR TCA 72 bp ACCCAACGTTCTTGGTTTTATAAAAAGACAAACAGATaGGAAGCTATCAGGGATCACGTTTCCATACTGATG +
Preference number: 3 (lower is better)
Translates to: TQRSWFYKKTNR*EAIRDHVSILM
Trigger: CATCAGTATGGAAACGTGATCCCTGATAGCTTCTCATCTGTTTGTCTTTTTATAAAACCAAGAACGTTGGGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
3UTR TCA 72 bp AGAGTGCTAATCCACTTTATATTATCACTGGCACATTaGAGCCCTGGCCCTTTATGTTATACTTCCTTACTA +
Preference number: 3 (lower is better)
Translates to: RVLIHFILSLAH*SPGPLCYTSLL
Trigger: TAGTAAGGAAGTATAACATAAAGGGCCAGGGCTTCAATGTGCCAGTGATAATATAAAGTGGATTAGCACTCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
3UTR CCA 72 bp AATCCACTTTATATTATCACTGGCACATTGAAGCCCTaGCCCTTTATGTTATACTTCCTTACTAATAGTGGC +
Preference number: 3 (lower is better)
Translates to: NPLYIITGTLKP*PFMLYFLTNSG
Trigger: GCCACTATTAGTAAGGAAGTATAACATAAAGGGCCAGGGCTTCAATGTGCCAGTGATAATATAAAGTGGATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
CDS-3UTR CCA 90 bp GATGCCATTGCAGATGTGACAGGGCTACAGCTGGCCTTCCGGAGCTCGCTTCTCCGGGACTCGGGGAGCTaGAGGCGGGGTTTGGGCCGG +
Preference number: 4 (lower is better)
Translates to: DAIADVTGLQLAFRSSLLRDSGS*RRGLGR
Trigger: CCGGCCCAAACCCCGCCTCCAGCTCCCCGAGTCCCG...GAGAAGCGAGCTCCGGAAGGCCAGCTGTAGCCCTGTCACATCTGCAATGGCATC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075540.8
CDS-3UTR CCA 90 bp GAAAGGCAAGGCGTGCGTGCTGGCACAAGGGGAACAAATCCAAGGGCCAGTGTTTTGCTGGCCGAGCACTaGAGCTGTGGTCGCAGGAGG +
Preference number: 4 (lower is better)
Translates to: ERQGVRAGTRGTNPRASVLLAEH*SCGRRR
Trigger: CCTCCTGCGACCACAGCTCCAGTGCTCGGCCAGCAA...AACACTGGCCCTTGGATTTGTTCCCCTTGTGCCAGCACGCACGCCTTGCCTTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp TTAGGTGATGAAGATGAACCTGACAAGGGAGTTGGGCTTCGGCAGGGCCACGCATTGCTGGCCGAGCACTaGAGCTGTGGTCGCAGGAGG +
Preference number: 4 (lower is better)
Translates to: LGDEDEPDKGVGLRQGHALLAEH*SCGRRR
Trigger: CCTCCTGCGACCACAGCTCCAGTGCTCGGCCAGCAA...TGCGTGGCCCTGCCGAAGCCCAACTCCCTTGTCAGGTTCATCTTCATCACCTAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp GATGCCATTGCAGATGTGACAGGGCTACAGCTGGCCTTCCGGAGCTCGCTTCTCCCCTGGGATCATTTCTaGAGGAACCTGGAGCCACCT +
Preference number: 4 (lower is better)
Translates to: DAIADVTGLQLAFRSSLLPWDHF*RNLEPP
Trigger: AGGTGGCTCCAGGTTCCTGCAGAAATGATCCCAGGG...GAGAAGCGAGCTCCGGAAGGCCAGCTGTAGCCCTGTCACATCTGCAATGGCATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp GATGCCATTGCAGATGTGACAGGGCTACAGCTGGCCTTCCGGAGCTCGCTTCTCCTCTCTGTGGGCTGCTaGAGCTGGAAAGTCTGCCTT +
Preference number: 4 (lower is better)
Translates to: DAIADVTGLQLAFRSSLLLSVGC*SWKVCL
Trigger: AAGGCAGACTTTCCAGCTGCAGCAGCCCACAGAGAG...GAGAAGCGAGCTCCGGAAGGCCAGCTGTAGCCCTGTCACATCTGCAATGGCATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp GAAAGGCAAGGCGTGCGTGCTGGCACAAGGGGAACAAATCCAAGGGCCAGTGTTGCTCTCTCTGTGGGCTaGTGCAGCTGGAAAGTCTGC +
Preference number: 4 (lower is better)
Translates to: ERQGVRAGTRGTNPRASVALSVG*CSWKVC
Trigger: GCAGACTTTCCAGCTGCAGCAGCCCACAGAGAGAGC...AACACTGGCCCTTGGATTTGTTCCCCTTGTGCCAGCACGCACGCCTTGCCTTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp ATGAAGATGAACCTGACAAGGGAGTTGGGCTTCGGCAGGGCCACGCACGTACTACAGAGGGACAGTGGGTaGCAGTGGTCGCACTCTGGT +
Preference number: 4 (lower is better)
Translates to: MKMNLTRELGFGRATHVLQRDSG*QWSHSG
Trigger: ACCAGAGTGCGACCACTGCCACCCACTGTCCCTCTG...TAGTACGTGCGTGGCCCTGCCGAAGCCCAACTCCCTTGTCAGGTTCATCTTCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp ATGAAAGGCAAGGCGTGCGTGCTGGCACAAGGGGAACAAATCCAAGGGCCAGTGTGTCCCTGCTGTCCCTaGTGTCCTTCCTTTCAGGAG +
Preference number: 4 (lower is better)
Translates to: MKGKACVLAQGEQIQGPVCPCCP*CPSFQE
Trigger: CTCCTGAAAGGAAGGACAGCAGGGACAGCAGGGACA...CACTGGCCCTTGGATTTGTTCCCCTTGTGCCAGCACGCACGCCTTGCCTTTCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp TGCCATTGCAGATGTGACAGGGCTACAGCTGGCCTTCCGGAGCTCGCTTCTCTTTGGAAAGTCTGCCTTTaGTGGCCGAGCACTGGAGCT +
Preference number: 4 (lower is better)
Translates to: CHCRCDRATAGLPELASLWKVCL*WPSTGA
Trigger: AGCTCCAGTGCTCGGCCAGCAAAGGCAGACTTTCCA...AAGAGAAGCGAGCTCCGGAAGGCCAGCTGTAGCCCTGTCACATCTGCAATGGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp TTAGGTGATGAAGATGAACCTGACAAGGGAGTTGGGCTTCGGCAGGGCCACGCAGCTCTCTCTGTGGGCTaGTGCAGCTGGAAAGTCTGC +
Preference number: 4 (lower is better)
Translates to: LGDEDEPDKGVGLRQGHAALSVG*CSWKVC
Trigger: GCAGACTTTCCAGCTGCAGCAGCCCACAGAGAGAGC...TGCGTGGCCCTGCCGAAGCCCAACTCCCTTGTCAGGTTCATCTTCATCACCTAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp GATGCCATTGCAGATGTGACAGGGCTACAGCTGGCCTTCCGGAGCTCGCTTCTCCAGACACAGACTCCTTaGGGTCATACTGGCCTTTGG +
Preference number: 4 (lower is better)
Translates to: DAIADVTGLQLAFRSSLLQTQTP*GHTGLW
Trigger: CCAAAGGCCAGTATGACCCCAAGGAGTCTGTGTCTG...GAGAAGCGAGCTCCGGAAGGCCAGCTGTAGCCCTGTCACATCTGCAATGGCATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp GATGCCATTGCAGATGTGACAGGGCTACAGCTGGCCTTCCGGAGCTCGCTTCTCTGGCCTTCGGGGGAGTaGGTCAGTTTTGTCTTCTGT +
Preference number: 4 (lower is better)
Translates to: DAIADVTGLQLAFRSSLLWPSGE*VSFVFC
Trigger: ACAGAAGACAAAACTGACCCACTCCCCCGAAGGCCA...GAGAAGCGAGCTCCGGAAGGCCAGCTGTAGCCCTGTCACATCTGCAATGGCATC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp GAAAGGCAAGGCGTGCGTGCTGGCACAAGGGGAACAAATCCAAGGGCCAGTGTTGATTCGCTCTCTCTGTaGGCTGCTGCAGCTGGAAAG +
Preference number: 4 (lower is better)
Translates to: ERQGVRAGTRGTNPRASVDSLSL*AAAAGK
Trigger: CTTTCCAGCTGCAGCAGCCCACAGAGAGAGCGAATC...AACACTGGCCCTTGGATTTGTTCCCCTTGTGCCAGCACGCACGCCTTGCCTTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp ATGAAGATGAACCTGACAAGGGAGTTGGGCTTCGGCAGGGCCACGCACGTACTACAGCGTACATCTCGCTaGAAGGGTTTCCACCGTTGC +
Preference number: 4 (lower is better)
Translates to: MKMNLTRELGFGRATHVLQRTSR*KGFHRC
Trigger: GCAACGGTGGAAACCCTTTCAGCGAGATGTACGCTG...TAGTACGTGCGTGGCCCTGCCGAAGCCCAACTCCCTTGTCAGGTTCATCTTCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp TGCCATTGCAGATGTGACAGGGCTACAGCTGGCCTTCCGGAGCTCGCTTCTCTTTCTGCACACATTCTGTaGCCCCTCCTTCAGCAGCTT +
Preference number: 4 (lower is better)
Translates to: CHCRCDRATAGLPELASLSAHIL*PLLQQL
Trigger: AAGCTGCTGAAGGAGGGGTCACAGAATGTGTGCAGA...AAGAGAAGCGAGCTCCGGAAGGCCAGCTGTAGCCCTGTCACATCTGCAATGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp GAAAGGCAAGGCGTGCGTGCTGGCACAAGGGGAACAAATCCAAGGGCCAGTGTTGTCTCAGGAAGGGACTaGAGAATTGCCAAGGCTGAC +
Preference number: 4 (lower is better)
Translates to: ERQGVRAGTRGTNPRASVVSGRD*RIAKAD
Trigger: GTCAGCCTTGGCAATTCTGCAGTCCCTTCCTGAGAC...AACACTGGCCCTTGGATTTGTTCCCCTTGTGCCAGCACGCACGCCTTGCCTTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp GATGCCATTGCAGATGTGACAGGGCTACAGCTGGCCTTCCGGAGCTCGCTTCTCTTTGGGGTTAGTTGCTaGCAGGATGGTGGTCCTTGT +
Preference number: 4 (lower is better)
Translates to: DAIADVTGLQLAFRSSLLFGVSC*QDGGPC
Trigger: ACAAGGACCACCATCCTGGCAGCAACTAACCCCAAA...GAGAAGCGAGCTCCGGAAGGCCAGCTGTAGCCCTGTCACATCTGCAATGGCATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp GATGCCATTGCAGATGTGACAGGGCTACAGCTGGCCTTCCGGAGCTCGCTTCTCAGAATGAGTTCACACTaGCTCTGGTACTGTGCACGG +
Preference number: 4 (lower is better)
Translates to: DAIADVTGLQLAFRSSLLRMSSH*LWYCAR
Trigger: CCGTGCACAGTACCAGAGGCAGTGTGAACTCATTCT...GAGAAGCGAGCTCCGGAAGGCCAGCTGTAGCCCTGTCACATCTGCAATGGCATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp TTAGGTGATGAAGATGAACCTGACAAGGGAGTTGGGCTTCGGCAGGGCCACGCATGGAAAGTCTGCCTTTaGTGGCCGAGCACTGGAGCT +
Preference number: 4 (lower is better)
Translates to: LGDEDEPDKGVGLRQGHAWKVCL*WPSTGA
Trigger: AGCTCCAGTGCTCGGCCAGCAAAGGCAGACTTTCCA...TGCGTGGCCCTGCCGAAGCCCAACTCCCTTGTCAGGTTCATCTTCATCACCTAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp ATGAAGATGAACCTGACAAGGGAGTTGGGCTTCGGCAGGGCCACGCACGTACTACTCTCTGTGGGCTGCTaGAGCTGGAAAGTCTGCCTT +
Preference number: 4 (lower is better)
Translates to: MKMNLTRELGFGRATHVLLSVGC*SWKVCL
Trigger: AAGGCAGACTTTCCAGCTGCAGCAGCCCACAGAGAG...TAGTACGTGCGTGGCCCTGCCGAAGCCCAACTCCCTTGTCAGGTTCATCTTCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp TGCCATTGCAGATGTGACAGGGCTACAGCTGGCCTTCCGGAGCTCGCTTCTCTTCACCAGCCAGTACCATaGCCACAGCAAGCTTCACTA +
Preference number: 4 (lower is better)
Translates to: CHCRCDRATAGLPELASLHQPVP*PQQASL
Trigger: TAGTGAAGCTTGCTGTGGCCATGGTACTGGCTGGTG...AAGAGAAGCGAGCTCCGGAAGGCCAGCTGTAGCCCTGTCACATCTGCAATGGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp GAAAGGCAAGGCGTGCGTGCTGGCACAAGGGGAACAAATCCAAGGGCCAGTGTTTGGCCTTCGGGGGAGTaGGTCAGTTTTGTCTTCTGT +
Preference number: 4 (lower is better)
Translates to: ERQGVRAGTRGTNPRASVWPSGE*VSFVFC
Trigger: ACAGAAGACAAAACTGACCCACTCCCCCGAAGGCCA...AACACTGGCCCTTGGATTTGTTCCCCTTGTGCCAGCACGCACGCCTTGCCTTTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp ATGAAAGGCAAGGCGTGCGTGCTGGCACAAGGGGAACAAATCCAAGGGCCAGTGATCTGTCTCCTGAGGTaGATGTCGACTTTCCTGGCG +
Preference number: 4 (lower is better)
Translates to: MKGKACVLAQGEQIQGPVICLLR*MSTFLA
Trigger: CGCCAGGAAAGTCGACATCCACCTCAGGAGACAGAT...CACTGGCCCTTGGATTTGTTCCCCTTGTGCCAGCACGCACGCCTTGCCTTTCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp TGCCATTGCAGATGTGACAGGGCTACAGCTGGCCTTCCGGAGCTCGCTTCTCTTGTCTTTCCGTGCAGCTaGTCAGAGCATCTGTCTCCT +
Preference number: 4 (lower is better)
Translates to: CHCRCDRATAGLPELASLVFPCS*SEHLSP
Trigger: AGGAGACAGATGCTCTGACCAGCTGCACGGAAAGAC...AAGAGAAGCGAGCTCCGGAAGGCCAGCTGTAGCCCTGTCACATCTGCAATGGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp GAAAGGCAAGGCGTGCGTGCTGGCACAAGGGGAACAAATCCAAGGGCCAGTGTTCCTCTCCTCTCTTGGTaGATTACTGTCTGGTGGCTG +
Preference number: 4 (lower is better)
Translates to: ERQGVRAGTRGTNPRASVPLLSW*ITVWWL
Trigger: CAGCCACCAGACAGTAATCCACCAAGAGAGGAGAGG...AACACTGGCCCTTGGATTTGTTCCCCTTGTGCCAGCACGCACGCCTTGCCTTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp ATGAAGATGAACCTGACAAGGGAGTTGGGCTTCGGCAGGGCCACGCACGTACTAGATTCGCTCTCTCTGTaGGCTGCTGCAGCTGGAAAG +
Preference number: 4 (lower is better)
Translates to: MKMNLTRELGFGRATHVLDSLSL*AAAAGK
Trigger: CTTTCCAGCTGCAGCAGCCCACAGAGAGAGCGAATC...TAGTACGTGCGTGGCCCTGCCGAAGCCCAACTCCCTTGTCAGGTTCATCTTCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp TGCCATTGCAGATGTGACAGGGCTACAGCTGGCCTTCCGGAGCTCGCTTCTCTTATGACGATGGCCGACTaGAGGTGTAATACTGCTCGA +
Preference number: 4 (lower is better)
Translates to: CHCRCDRATAGLPELASLMTMAD*RCNTAR
Trigger: TCGAGCAGTATTACACCTTCAGTCGGCCATCGTCAT...AAGAGAAGCGAGCTCCGGAAGGCCAGCTGTAGCCCTGTCACATCTGCAATGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp GATGCCATTGCAGATGTGACAGGGCTACAGCTGGCCTTCCGGAGCTCGCTTCTCCCTGCTCCTGAATTTTaGTTTCCTGGTAATCCCGAC +
Preference number: 4 (lower is better)
Translates to: DAIADVTGLQLAFRSSLLPAPEF*FPGNPD
Trigger: GTCGGGATTACCAGGAAATCAAAATTCAGGAGCAGG...GAGAAGCGAGCTCCGGAAGGCCAGCTGTAGCCCTGTCACATCTGCAATGGCATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp TTAGGTGATGAAGATGAACCTGACAAGGGAGTTGGGCTTCGGCAGGGCCACGCATCTGCACACATTCTGTaGCCCCTCCTTCAGCAGCTT +
Preference number: 4 (lower is better)
Translates to: LGDEDEPDKGVGLRQGHASAHIL*PLLQQL
Trigger: AAGCTGCTGAAGGAGGGGTCACAGAATGTGTGCAGA...TGCGTGGCCCTGCCGAAGCCCAACTCCCTTGTCAGGTTCATCTTCATCACCTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp CGTGCTGGCACAAGGGGAACAAATCCAAGGGCCAGTGTTTCTGTAAGCTACGGTGTCTGGTGGCTGCCTTaGGAGCTCCTTTGTCTTTCC +
Preference number: 4 (lower is better)
Translates to: RAGTRGTNPRASVSVSYGVWWLP*ELLCLS
Trigger: GGAAAGACAAAGGAGCTCTCAAGGCAGCCACCAGAC...ACCGTAGCTTACAGAAACACTGGCCCTTGGATTTGTTCCCCTTGTGCCAGCACG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp ATGAAGATGAACCTGACAAGGGAGTTGGGCTTCGGCAGGGCCACGCACGTACTACTAGTTCCGACAGAGTaGAGAGGGAGAGGGTGGAAA +
Preference number: 4 (lower is better)
Translates to: MKMNLTRELGFGRATHVLLVPTE*RGRGWK
Trigger: TTTCCACCCTCTCCCTCTTCACTCTGTCGGAACTAG...TAGTACGTGCGTGGCCCTGCCGAAGCCCAACTCCCTTGTCAGGTTCATCTTCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp CGTGCTGGCACAAGGGGAACAAATCCAAGGGCCAGTGTTTCTGTAAGCTACGGTCCCTGGGATCATTTCTaGAGGAACCTGGAGCCACCT +
Preference number: 4 (lower is better)
Translates to: RAGTRGTNPRASVSVSYGPWDHF*RNLEPP
Trigger: AGGTGGCTCCAGGTTCCTGCAGAAATGATCCCAGGG...ACCGTAGCTTACAGAAACACTGGCCCTTGGATTTGTTCCCCTTGTGCCAGCACG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp GATGCCATTGCAGATGTGACAGGGCTACAGCTGGCCTTCCGGAGCTCGCTTCTCGGTAATCCCGACATCTaGCTGGAGATGAAGACAAGT +
Preference number: 4 (lower is better)
Translates to: DAIADVTGLQLAFRSSLLGNPDI*LEMKTS
Trigger: ACTTGTCTTCATCTCCAGCCAGATGTCGGGATTACC...GAGAAGCGAGCTCCGGAAGGCCAGCTGTAGCCCTGTCACATCTGCAATGGCATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp ATGAAGATGAACCTGACAAGGGAGTTGGGCTTCGGCAGGGCCACGCACGTACTAAGTTCACACTGCCTCTaGTACTGTGCACGGGGGTTT +
Preference number: 4 (lower is better)
Translates to: MKMNLTRELGFGRATHVLSSHCL*YCARGF
Trigger: AAACCCCCGTGCACAGTACCAGAGGCAGTGTGAACT...TAGTACGTGCGTGGCCCTGCCGAAGCCCAACTCCCTTGTCAGGTTCATCTTCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp ATGAAGATGAACCTGACAAGGGAGTTGGGCTTCGGCAGGGCCACGCACGTACTATCCTGCAAGAGGCCCTaGAGTTCCAGCTTTTCCAGA +
Preference number: 4 (lower is better)
Translates to: MKMNLTRELGFGRATHVLSCKRP*SSSFSR
Trigger: TCTGGAAAAGCTGGAACTCCAGGGCCTCTTGCAGGA...TAGTACGTGCGTGGCCCTGCCGAAGCCCAACTCCCTTGTCAGGTTCATCTTCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp GAGTGCCACCATCCTGCCATTTGGTCTGGATATGTGAGAGAAGAAGCTCAGAATGGGACAGAGGGACAGTaGGTGGCAGTGGTCGCACTC +
Preference number: 4 (lower is better)
Translates to: ECHHPAIWSGYVREEAQNGTEGQ*VAVVAL
Trigger: GAGTGCGACCACTGCCACCCACTGTCCCTCTGTCCC...ATTCTGAGCTTCTTCTCTCACATATCCAGACCAAATGGCAGGATGGTGGCACTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp TTAGGTGATGAAGATGAACCTGACAAGGGAGTTGGGCTTCGGCAGGGCCACGCAATCTGTCTCCTGAGGTaGATGTCGACTTTCCTGGCG +
Preference number: 4 (lower is better)
Translates to: LGDEDEPDKGVGLRQGHAICLLR*MSTFLA
Trigger: CGCCAGGAAAGTCGACATCCACCTCAGGAGACAGAT...TGCGTGGCCCTGCCGAAGCCCAACTCCCTTGTCAGGTTCATCTTCATCACCTAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp AAAGCACTTAGCTGCCTTGTTAGATTTCTGAGTGCCACCATCCTGCCATTTGGTGTCGCAGGAGGGCTGTaGCACCTGTCCCTGCTGTCC +
Preference number: 4 (lower is better)
Translates to: KALSCLVRFLSATILPFGVAGGL*HLSLLS
Trigger: GGACAGCAGGGACAGGTGCCACAGCCCTCCTGCGAC...ACCAAATGGCAGGATGGTGGCACTCAGAAATCTAACAAGGCAGCTAAGTGCTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp GATGCCATTGCAGATGTGACAGGGCTACAGCTGGCCTTCCGGAGCTCGCTTCTCCCTGATATCCTGGCATaGAGATTCTGCTTCATGGAT +
Preference number: 4 (lower is better)
Translates to: DAIADVTGLQLAFRSSLLPDILA*RFCFMD
Trigger: ATCCATGAAGCAGAATCTTCATGCCAGGATATCAGG...GAGAAGCGAGCTCCGGAAGGCCAGCTGTAGCCCTGTCACATCTGCAATGGCATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp TTAGGTGATGAAGATGAACCTGACAAGGGAGTTGGGCTTCGGCAGGGCCACGCATGGGAATGTGTTCCCTaGCCAGTTCTGGACAAACAG +
Preference number: 4 (lower is better)
Translates to: LGDEDEPDKGVGLRQGHAWECVP*PVLDKQ
Trigger: CTGTTTGTCCAGAACTGGTCAGGGAACACATTCCCA...TGCGTGGCCCTGCCGAAGCCCAACTCCCTTGTCAGGTTCATCTTCATCACCTAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp ATGAAGATGAACCTGACAAGGGAGTTGGGCTTCGGCAGGGCCACGCACGTACTAGGATCACTGTCCCAGTaGCAGATAAGAAGTGTCCCA +
Preference number: 4 (lower is better)
Translates to: MKMNLTRELGFGRATHVLGSLSQ*QIRSVP
Trigger: TGGGACACTTCTTATCTGTCACTGGGACAGTGATCC...TAGTACGTGCGTGGCCCTGCCGAAGCCCAACTCCCTTGTCAGGTTCATCTTCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp GAAAGGCAAGGCGTGCGTGCTGGCACAAGGGGAACAAATCCAAGGGCCAGTGTTCCAACCAATAAAAGGTaGGATTCCCCTCTAACCCTG +
Preference number: 4 (lower is better)
Translates to: ERQGVRAGTRGTNPRASVPTNKR*DSPLTL
Trigger: CAGGGTTAGAGGGGAATCTCACCTTTTATTGGTTGG...AACACTGGCCCTTGGATTTGTTCCCCTTGTGCCAGCACGCACGCCTTGCCTTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp ATGAAGATGAACCTGACAAGGGAGTTGGGCTTCGGCAGGGCCACGCACGTACTAAGCACCTCCCTGCATTaGAGACTCCATCACAGATAC +
Preference number: 4 (lower is better)
Translates to: MKMNLTRELGFGRATHVLSTSLH*RLHHRY
Trigger: GTATCTGTGATGGAGTCTTCAATGCAGGGAGGTGCT...TAGTACGTGCGTGGCCCTGCCGAAGCCCAACTCCCTTGTCAGGTTCATCTTCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp CGTGCTGGCACAAGGGGAACAAATCCAAGGGCCAGTGTTTCTGTAAGCTACGGTCTAGTTCCGACAGAGTaGAGAGGGAGAGGGTGGAAA +
Preference number: 4 (lower is better)
Translates to: RAGTRGTNPRASVSVSYGLVPTE*RGRGWK
Trigger: TTTCCACCCTCTCCCTCTTCACTCTGTCGGAACTAG...ACCGTAGCTTACAGAAACACTGGCCCTTGGATTTGTTCCCCTTGTGCCAGCACG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp ATGAAGATGAACCTGACAAGGGAGTTGGGCTTCGGCAGGGCCACGCACGTACTATTTGGGGTTAGTTGCTaGCAGGATGGTGGTCCTTGT +
Preference number: 4 (lower is better)
Translates to: MKMNLTRELGFGRATHVLFGVSC*QDGGPC
Trigger: ACAAGGACCACCATCCTGGCAGCAACTAACCCCAAA...TAGTACGTGCGTGGCCCTGCCGAAGCCCAACTCCCTTGTCAGGTTCATCTTCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp ATGAAAGGCAAGGCGTGCGTGCTGGCACAAGGGGAACAAATCCAAGGGCCAGTGAACCACTGCCTGACTTaGCTTTGTACGCTTAACACC +
Preference number: 4 (lower is better)
Translates to: MKGKACVLAQGEQIQGPVNHCLT*LCTLNT
Trigger: GGTGTTAAGCGTACAAAGGCAAGTCAGGCAGTGGTT...CACTGGCCCTTGGATTTGTTCCCCTTGTGCCAGCACGCACGCCTTGCCTTTCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp ATGAAAGGCAAGGCGTGCGTGCTGGCACAAGGGGAACAAATCCAAGGGCCAGTGTGCCAGCATGAACCTTaGTGCTTTTATTACCGCAGG +
Preference number: 4 (lower is better)
Translates to: MKGKACVLAQGEQIQGPVCQHEP*CFYYRR
Trigger: CCTGCGGTAATAAAAGCAGCAAGGTTCATGCTGGCA...CACTGGCCCTTGGATTTGTTCCCCTTGTGCCAGCACGCACGCCTTGCCTTTCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp TGCCATTGCAGATGTGACAGGGCTACAGCTGGCCTTCCGGAGCTCGCTTCTCTTTTGAGGAGTCACAGCTaGCTAAACTTGGACATGACG +
Preference number: 4 (lower is better)
Translates to: CHCRCDRATAGLPELASLLRSHS*LNLDMT
Trigger: CGTCATGTCCAAGTTTAGCCAGCTGTGACTCCTCAA...AAGAGAAGCGAGCTCCGGAAGGCCAGCTGTAGCCCTGTCACATCTGCAATGGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp ATGGTGATGATGCACAGGAGAGCCATGGGATGCAGGTTATGCGGTGCCTTCACACACCAGCCAGTACCATaGCCACAGCAAGCTTCACTA +
Preference number: 4 (lower is better)
Translates to: MVMMHRRAMGCRLCGAFTHQPVP*PQQASL
Trigger: TAGTGAAGCTTGCTGTGGCCATGGTACTGGCTGGTG...TGTGAAGGCACCGCATAACCTGCATCCCATGGCTCTCCTGTGCATCATCACCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000218549.3
ENSMUST00000219838.3
CDS-3UTR CCA 90 bp TTAGGTGATGAAGATGAACCTGACAAGGGAGTTGGGCTTCGGCAGGGCCACGCATCCTTGGGGTCATACTaGCCTTTGGGGTTAGTTGCT +
Preference number: 4 (lower is better)
Translates to: LGDEDEPDKGVGLRQGHASLGSY*PLGLVA
Trigger: AGCAACTAACCCCAAAGGCCAGTATGACCCCAAGGA...TGCGTGGCCCTGCCGAAGCCCAACTCCCTTGTCAGGTTCATCTTCATCACCTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp GATGCCATTGCAGATGTGACAGGGCTACAGCTGGCCTTCCGGAGCTCGCTTCTCGCTCCACAGATTCTCTaGTTTGCTTGGATAACCTTT +
Preference number: 4 (lower is better)
Translates to: DAIADVTGLQLAFRSSLLAPQIL*FAWITF
Trigger: AAAGGTTATCCAAGCAAATCAGAGAATCTGTGGAGC...GAGAAGCGAGCTCCGGAAGGCCAGCTGTAGCCCTGTCACATCTGCAATGGCATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp TTAGGTGATGAAGATGAACCTGACAAGGGAGTTGGGCTTCGGCAGGGCCACGCAGGTGGAGATTCCGAATaGGGCAGAAGTAGGTTTTCA +
Preference number: 4 (lower is better)
Translates to: LGDEDEPDKGVGLRQGHAGGDSE*GRSRFS
Trigger: TGAAAACCTACTTCTGCCTCATTCGGAATCTCCACC...TGCGTGGCCCTGCCGAAGCCCAACTCCCTTGTCAGGTTCATCTTCATCACCTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp ATGAAGATGAACCTGACAAGGGAGTTGGGCTTCGGCAGGGCCACGCACGTACTAATACTGCTCGAAGTCTaGCTCCACCATGAACACATG +
Preference number: 4 (lower is better)
Translates to: MKMNLTRELGFGRATHVLILLEV*LHHEHM
Trigger: CATGTGTTCATGGTGGAGGCAGACTTCGAGCAGTAT...TAGTACGTGCGTGGCCCTGCCGAAGCCCAACTCCCTTGTCAGGTTCATCTTCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp GAGTGCCACCATCCTGCCATTTGGTCTGGATATGTGAGAGAAGAAGCTCAGAATGCAGAGACCAGCATCTaGAAGCACCAAAGCCCCAGC +
Preference number: 4 (lower is better)
Translates to: ECHHPAIWSGYVREEAQNAETSI*KHQSPS
Trigger: GCTGGGGCTTTGGTGCTTGCAGATGCTGGTCTCTGC...ATTCTGAGCTTCTTCTCTCACATATCCAGACCAAATGGCAGGATGGTGGCACTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp GAAAGGCAAGGCGTGCGTGCTGGCACAAGGGGAACAAATCCAAGGGCCAGTGTTGGTTTGTTGCTCCATTaGTTCATGGATGCTTGTCCT +
Preference number: 4 (lower is better)
Translates to: ERQGVRAGTRGTNPRASVGLLLH*FMDACP
Trigger: AGGACAAGCATCCATGAAGCAATGGAGCAACAAACC...AACACTGGCCCTTGGATTTGTTCCCCTTGTGCCAGCACGCACGCCTTGCCTTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp TGCCATTGCAGATGTGACAGGGCTACAGCTGGCCTTCCGGAGCTCGCTTCTCTTGGTTTGTTGCTCCATTaGTTCATGGATGCTTGTCCT +
Preference number: 4 (lower is better)
Translates to: CHCRCDRATAGLPELASLGLLLH*FMDACP
Trigger: AGGACAAGCATCCATGAAGCAATGGAGCAACAAACC...AAGAGAAGCGAGCTCCGGAAGGCCAGCTGTAGCCCTGTCACATCTGCAATGGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp TTAGGTGATGAAGATGAACCTGACAAGGGAGTTGGGCTTCGGCAGGGCCACGCAGAAGGAGGACTTGATTaGTCACTTCAGACAGTGTGG +
Preference number: 4 (lower is better)
Translates to: LGDEDEPDKGVGLRQGHAEGGLD*SLQTVW
Trigger: CCACACTGTCTGAAGTGAGCAATCAAGTCCTCCTTC...TGCGTGGCCCTGCCGAAGCCCAACTCCCTTGTCAGGTTCATCTTCATCACCTAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp ATGAAGATGAACCTGACAAGGGAGTTGGGCTTCGGCAGGGCCACGCACGTACTAAGTGTCCCACATCCTTaGTTTTGGGAATGTGTTCCC +
Preference number: 4 (lower is better)
Translates to: MKMNLTRELGFGRATHVLSVPHP*FWECVP
Trigger: GGGAACACATTCCCAAAACCAAGGATGTGGGACACT...TAGTACGTGCGTGGCCCTGCCGAAGCCCAACTCCCTTGTCAGGTTCATCTTCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp ATGAAGATGAACCTGACAAGGGAGTTGGGCTTCGGCAGGGCCACGCACGTACTAGGTAATCCCGACATCTaGCTGGAGATGAAGACAAGT +
Preference number: 4 (lower is better)
Translates to: MKMNLTRELGFGRATHVLGNPDI*LEMKTS
Trigger: ACTTGTCTTCATCTCCAGCCAGATGTCGGGATTACC...TAGTACGTGCGTGGCCCTGCCGAAGCCCAACTCCCTTGTCAGGTTCATCTTCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp TGCCATTGCAGATGTGACAGGGCTACAGCTGGCCTTCCGGAGCTCGCTTCTCTTGGTCAAAACGGACCTTaGGGTAATCTTTGCTGCATA +
Preference number: 4 (lower is better)
Translates to: CHCRCDRATAGLPELASLGQNGP*GNLCCI
Trigger: TATGCAGCAAAGATTACCCCAAGGTCCGTTTTGACC...AAGAGAAGCGAGCTCCGGAAGGCCAGCTGTAGCCCTGTCACATCTGCAATGGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp CAAAGCAAACAGAAAGCACTTAGCTGCCTTGTTAGATTTCTGAGTGCCACCATCGGGACAGAGGGACAGTaGGTGGCAGTGGTCGCACTC +
Preference number: 4 (lower is better)
Translates to: QSKQKALSCLVRFLSATIGTEGQ*VAVVAL
Trigger: GAGTGCGACCACTGCCACCCACTGTCCCTCTGTCCC...GATGGTGGCACTCAGAAATCTAACAAGGCAGCTAAGTGCTTTCTGTTTGCTTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp ATGGTGATGATGCACAGGAGAGCCATGGGATGCAGGTTATGCGGTGCCTTCACAAGTCTGCCTCCACCATaGACACATGCTTGCATTTGT +
Preference number: 4 (lower is better)
Translates to: MVMMHRRAMGCRLCGAFTSLPPP*THACIC
Trigger: ACAAATGCAAGCATGTGTTCATGGTGGAGGCAGACT...TGTGAAGGCACCGCATAACCTGCATCCCATGGCTCTCCTGTGCATCATCACCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000218549.3
ENSMUST00000219838.3
CDS-3UTR TCA 90 bp GAAAGGCAAGGCGTGCGTGCTGGCACAAGGGGAACAAATCCAAGGGCCAGTGTTTGCTTCTCCTTGCCCTaGGATTTATTGTTGGAGATT +
Preference number: 4 (lower is better)
Translates to: ERQGVRAGTRGTNPRASVCFSLP*DLLLEI
Trigger: AATCTCCAACAATAAATCTCAGGGCAAGGAGAAGCA...AACACTGGCCCTTGGATTTGTTCCCCTTGTGCCAGCACGCACGCCTTGCCTTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp GATGCCATTGCAGATGTGACAGGGCTACAGCTGGCCTTCCGGAGCTCGCTTCTCTTTAGAACTGTCAACTaGTATTTCACTAGCACTGGG +
Preference number: 4 (lower is better)
Translates to: DAIADVTGLQLAFRSSLLFRTVN*YFTSTG
Trigger: CCCAGTGCTAGTGAAATAGCAGTTGACAGTTCTAAA...GAGAAGCGAGCTCCGGAAGGCCAGCTGTAGCCCTGTCACATCTGCAATGGCATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp GAGTGCCACCATCCTGCCATTTGGTCTGGATATGTGAGAGAAGAAGCTCAGAATTGGAAAGTCTGCCTTTaGTGGCCGAGCACTGGAGCT +
Preference number: 4 (lower is better)
Translates to: ECHHPAIWSGYVREEAQNWKVCL*WPSTGA
Trigger: AGCTCCAGTGCTCGGCCAGCAAAGGCAGACTTTCCA...ATTCTGAGCTTCTTCTCTCACATATCCAGACCAAATGGCAGGATGGTGGCACTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp ATTTCTGAGTGCCACCATCCTGCCATTTGGTCTGGATATGTGAGAGAAGAAGCTGCTCTCTCTGTGGGCTaGTGCAGCTGGAAAGTCTGC +
Preference number: 4 (lower is better)
Translates to: ISECHHPAIWSGYVREEAALSVG*CSWKVC
Trigger: GCAGACTTTCCAGCTGCAGCAGCCCACAGAGAGAGC...AGCTTCTTCTCTCACATATCCAGACCAAATGGCAGGATGGTGGCACTCAGAAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp CAAAGCAAACAGAAAGCACTTAGCTGCCTTGTTAGATTTCTGAGTGCCACCATCCAGAGGGACAGTGGGTaGCAGTGGTCGCACTCTGGT +
Preference number: 4 (lower is better)
Translates to: QSKQKALSCLVRFLSATIQRDSG*QWSHSG
Trigger: ACCAGAGTGCGACCACTGCCACCCACTGTCCCTCTG...GATGGTGGCACTCAGAAATCTAACAAGGCAGCTAAGTGCTTTCTGTTTGCTTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp GGCAAGTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCAGGAGTCGCAGGAGGGCTGTaGCACCTGTCCCTGCTGTCC +
Preference number: 4 (lower is better)
Translates to: GKSFQMLINTAFSTYWAGVAGGL*HLSLLS
Trigger: GGACAGCAGGGACAGGTGCCACAGCCCTCCTGCGAC...TCCTGCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGACTTGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp ACATCAGCCACAAGGATTTCTAAGTGTGTAGGGGTAGCTCTTTATAGGCCAACCCAGCGTACATCTCGCTaGAAGGGTTTCCACCGTTGC +
Preference number: 4 (lower is better)
Translates to: TSATRISKCVGVALYRPTQRTSR*KGFHRC
Trigger: GCAACGGTGGAAACCCTTTCAGCGAGATGTACGCTG...GGTTGGCCTATAAAGAGCTACCCCTACACACTTAGAAATCCTTGTGGCTGATGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
CDS-3UTR TCA 90 bp AAAGCACTTAGCTGCCTTGTTAGATTTCTGAGTGCCACCATCCTGCCATTTGGTCAGCGTACATCTCGCTaGAAGGGTTTCCACCGTTGC +
Preference number: 4 (lower is better)
Translates to: KALSCLVRFLSATILPFGQRTSR*KGFHRC
Trigger: GCAACGGTGGAAACCCTTTCAGCGAGATGTACGCTG...ACCAAATGGCAGGATGGTGGCACTCAGAAATCTAACAAGGCAGCTAAGTGCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp ATGAAGATGAACCTGACAAGGGAGTTGGGCTTCGGCAGGGCCACGCACGTACTAGCTCCACAGATTCTCTaGTTTGCTTGGATAACCTTT +
Preference number: 4 (lower is better)
Translates to: MKMNLTRELGFGRATHVLAPQIL*FAWITF
Trigger: AAAGGTTATCCAAGCAAATCAGAGAATCTGTGGAGC...TAGTACGTGCGTGGCCCTGCCGAAGCCCAACTCCCTTGTCAGGTTCATCTTCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp ATTTCTGAGTGCCACCATCCTGCCATTTGGTCTGGATATGTGAGAGAAGAAGCTGTCTGGTGGCTGCCTTaGGAGCTCCTTTGTCTTTCC +
Preference number: 4 (lower is better)
Translates to: ISECHHPAIWSGYVREEAVWWLP*ELLCLS
Trigger: GGAAAGACAAAGGAGCTCTCAAGGCAGCCACCAGAC...AGCTTCTTCTCTCACATATCCAGACCAAATGGCAGGATGGTGGCACTCAGAAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp AGGGTTTTTCTAGGCCACCCCAGTGCATCTTACCACAACTTGTGTTACACCAGAGTCTCAGGAAGGGACTaGAGAATTGCCAAGGCTGAC +
Preference number: 4 (lower is better)
Translates to: RVFLGHPSASYHNLCYTRVSGRD*RIAKAD
Trigger: GTCAGCCTTGGCAATTCTGCAGTCCCTTCCTGAGAC...TCTGGTGTAACACAAGTTGTGGTAAGATGCACTGGGGTGGCCTAGAAAAACCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000218549.3
CDS-3UTR GCA 90 bp CGTGCTGGCACAAGGGGAACAAATCCAAGGGCCAGTGTTTCTGTAAGCTACGGTATTGTGATTTCCCTGTaGCAGGATCCCCAACCAATA +
Preference number: 4 (lower is better)
Translates to: RAGTRGTNPRASVSVSYGIVISL*QDPQPI
Trigger: TATTGGTTGGGGATCCTGGCACAGGGAAATCACAAT...ACCGTAGCTTACAGAAACACTGGCCCTTGGATTTGTTCCCCTTGTGCCAGCACG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp CACCATCCTGCCATTTGGTCTGGATATGTGAGAGAAGAAGCTCAGAATAGAACTGCAGAGACCAGCATCTaGAAGCACCAAAGCCCCAGC +
Preference number: 4 (lower is better)
Translates to: HHPAIWSGYVREEAQNRTAETSI*KHQSPS
Trigger: GCTGGGGCTTTGGTGCTTGCAGATGCTGGTCTCTGC...AGTTCTATTCTGAGCTTCTTCTCTCACATATCCAGACCAAATGGCAGGATGGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp AAAGCACTTAGCTGCCTTGTTAGATTTCTGAGTGCCACCATCCTGCCATTTGGTGCCTTTGGGGTTAGTTaGTGCCAGGATGGTGGTCCT +
Preference number: 4 (lower is better)
Translates to: KALSCLVRFLSATILPFGAFGVS*CQDGGP
Trigger: AGGACCACCATCCTGGCAGCAACTAACCCCAAAGGC...ACCAAATGGCAGGATGGTGGCACTCAGAAATCTAACAAGGCAGCTAAGTGCTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp GAAAGGCAAGGCGTGCGTGCTGGCACAAGGGGAACAAATCCAAGGGCCAGTGTTTTTAGAACTGTCAACTaGTATTTCACTAGCACTGGG +
Preference number: 4 (lower is better)
Translates to: ERQGVRAGTRGTNPRASVFRTVN*YFTSTG
Trigger: CCCAGTGCTAGTGAAATAGCAGTTGACAGTTCTAAA...AACACTGGCCCTTGGATTTGTTCCCCTTGTGCCAGCACGCACGCCTTGCCTTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp GAGTGCCACCATCCTGCCATTTGGTCTGGATATGTGAGAGAAGAAGCTCAGAATAGTGAAGGAGAAGCTTaGCAGTCTGGCTATGGTGCC +
Preference number: 4 (lower is better)
Translates to: ECHHPAIWSGYVREEAQNSEGEA*QSGYGA
Trigger: GGCACCATAGCCAGACTGGCAAGCTTCTCCTTCACT...ATTCTGAGCTTCTTCTCTCACATATCCAGACCAAATGGCAGGATGGTGGCACTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp AAAGCACTTAGCTGCCTTGTTAGATTTCTGAGTGCCACCATCCTGCCATTTGGTTGTCCCTGCTGTCCCTaGTGTCCTTCCTTTCAGGAG +
Preference number: 4 (lower is better)
Translates to: KALSCLVRFLSATILPFGCPCCP*CPSFQE
Trigger: CTCCTGAAAGGAAGGACAGCAGGGACAGCAGGGACA...ACCAAATGGCAGGATGGTGGCACTCAGAAATCTAACAAGGCAGCTAAGTGCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp TTAGGTGATGAAGATGAACCTGACAAGGGAGTTGGGCTTCGGCAGGGCCACGCATCTAGTGAATGTGACTaGCATTGGTGTACACTCTCA +
Preference number: 4 (lower is better)
Translates to: LGDEDEPDKGVGLRQGHASSECD*HWCTLS
Trigger: TGAGAGTGTACACCAATGCCAGTCACATTCACTAGA...TGCGTGGCCCTGCCGAAGCCCAACTCCCTTGTCAGGTTCATCTTCATCACCTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp GGCAAGTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCAGGAGGGACAGAGGGACAGTaGGTGGCAGTGGTCGCACTC +
Preference number: 4 (lower is better)
Translates to: GKSFQMLINTAFSTYWAGGTEGQ*VAVVAL
Trigger: GAGTGCGACCACTGCCACCCACTGTCCCTCTGTCCC...TCCTGCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGACTTGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp TGCCATTGCAGATGTGACAGGGCTACAGCTGGCCTTCCGGAGCTCGCTTCTCTTTCCGTCTCTTTCTTTTaGGTGTTCCTGATCTTTTTC +
Preference number: 4 (lower is better)
Translates to: CHCRCDRATAGLPELASLSVSFF*VFLIFF
Trigger: GAAAAAGATCAGGAACACCCAAAAGAAAGAGACGGA...AAGAGAAGCGAGCTCCGGAAGGCCAGCTGTAGCCCTGTCACATCTGCAATGGCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp GAGTGCCACCATCCTGCCATTTGGTCTGGATATGTGAGAGAAGAAGCTCAGAATCCTCTCCTCTCTTGGTaGATTACTGTCTGGTGGCTG +
Preference number: 4 (lower is better)
Translates to: ECHHPAIWSGYVREEAQNPLLSW*ITVWWL
Trigger: CAGCCACCAGACAGTAATCCACCAAGAGAGGAGAGG...ATTCTGAGCTTCTTCTCTCACATATCCAGACCAAATGGCAGGATGGTGGCACTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp GAGTGCCACCATCCTGCCATTTGGTCTGGATATGTGAGAGAAGAAGCTCAGAATTTGCCAGTCTGGCTATaGTGCCAGCATGAACCTTGC +
Preference number: 4 (lower is better)
Translates to: ECHHPAIWSGYVREEAQNLPVWL*CQHEPC
Trigger: GCAAGGTTCATGCTGGCACCATAGCCAGACTGGCAA...ATTCTGAGCTTCTTCTCTCACATATCCAGACCAAATGGCAGGATGGTGGCACTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp GGATATGTGAGAGAAGAAGCTCAGAATAGAACTCCTCTAGTAAAAACCAAACCAGTCGCAGGAGGGCTGTaGCACCTGTCCCTGCTGTCC +
Preference number: 4 (lower is better)
Translates to: GYVREEAQNRTPLVKTKPVAGGL*HLSLLS
Trigger: GGACAGCAGGGACAGGTGCCACAGCCCTCCTGCGAC...TGGTTTGGTTTTTACTAGAGGAGTTCTATTCTGAGCTTCTTCTCTCACATATCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp ATTTCTGAGTGCCACCATCCTGCCATTTGGTCTGGATATGTGAGAGAAGAAGCTGATTCGCTCTCTCTGTaGGCTGCTGCAGCTGGAAAG +
Preference number: 4 (lower is better)
Translates to: ISECHHPAIWSGYVREEADSLSL*AAAAGK
Trigger: CTTTCCAGCTGCAGCAGCCCACAGAGAGAGCGAATC...AGCTTCTTCTCTCACATATCCAGACCAAATGGCAGGATGGTGGCACTCAGAAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp AAAGCACTTAGCTGCCTTGTTAGATTTCTGAGTGCCACCATCCTGCCATTTGGTGATTCGCTCTCTCTGTaGGCTGCTGCAGCTGGAAAG +
Preference number: 4 (lower is better)
Translates to: KALSCLVRFLSATILPFGDSLSL*AAAAGK
Trigger: CTTTCCAGCTGCAGCAGCCCACAGAGAGAGCGAATC...ACCAAATGGCAGGATGGTGGCACTCAGAAATCTAACAAGGCAGCTAAGTGCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
3UTR CAA 72 bp AGACGGCCTAGGCTTAGTGCTTGGCATGCCACAGGATaGGTTGGCAATCATTTCATGTCACATCAGCCACAA +
Preference number: 4 (lower is better)
Translates to: RRPRLSAWHATG*VGNHFMSHQPQ
Trigger: TTGTGGCTGATGTGACATGAAATGATTGCCAACCAATCCTGTGGCATGCCAAGCACTAAGCCTAGGCCGTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
CDS-3UTR TCA 90 bp ATGAAGATGAACCTGACAAGGGAGTTGGGCTTCGGCAGGGCCACGCACGTACTAGTTCTTATGGTACTCTaGAACATAGGACTCAAACAC +
Preference number: 4 (lower is better)
Translates to: MKMNLTRELGFGRATHVLVLMVL*NIGLKH
Trigger: GTGTTTGAGTCCTATGTTTCAGAGTACCATAAGAAC...TAGTACGTGCGTGGCCCTGCCGAAGCCCAACTCCCTTGTCAGGTTCATCTTCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp ATGGTGATGATGCACAGGAGAGCCATGGGATGCAGGTTATGCGGTGCCTTCACAACAAACAGGCAAACCTaGTATCCTGGCATGAAGATT +
Preference number: 4 (lower is better)
Translates to: MVMMHRRAMGCRLCGAFTTNRQT*YPGMKI
Trigger: AATCTTCATGCCAGGATATCAGGTTTGCCTGTTTGT...TGTGAAGGCACCGCATAACCTGCATCCCATGGCTCTCCTGTGCATCATCACCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000218549.3
ENSMUST00000219838.3
CDS-3UTR TCA 90 bp GAGTGCCACCATCCTGCCATTTGGTCTGGATATGTGAGAGAAGAAGCTCAGAATTGGGAATGTGTTCCCTaGCCAGTTCTGGACAAACAG +
Preference number: 4 (lower is better)
Translates to: ECHHPAIWSGYVREEAQNWECVP*PVLDKQ
Trigger: CTGTTTGTCCAGAACTGGTCAGGGAACACATTCCCA...ATTCTGAGCTTCTTCTCTCACATATCCAGACCAAATGGCAGGATGGTGGCACTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp AGTGCTTGGCATGCCACAGGATTGGTTGGCAATCATTTCATGTCACATCAGCCAATGACGATGGCCGACTaGAGGTGTAATACTGCTCGA +
Preference number: 4 (lower is better)
Translates to: SAWHATGLVGNHFMSHQPMTMAD*RCNTAR
Trigger: TCGAGCAGTATTACACCTTCAGTCGGCCATCGTCAT...TGGCTGATGTGACATGAAATGATTGCCAACCAATCCTGTGGCATGCCAAGCACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
CDS-3UTR TCA 90 bp AGTCCCTCTGACTATGGTGTATGCTTCCTTACATCTAAAACTGGGAAACCACGACAGCGTACATCTCGCTaGAAGGGTTTCCACCGTTGC +
Preference number: 4 (lower is better)
Translates to: SPSDYGVCFLTSKTGKPRQRTSR*KGFHRC
Trigger: GCAACGGTGGAAACCCTTTCAGCGAGATGTACGCTG...TCGTGGTTTCCCAGTTTTAGATGTAAGGAAGCATACACCATAGTCAGAGGGACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218549.3
CDS-3UTR TCA 90 bp GAGTGCCACCATCCTGCCATTTGGTCTGGATATGTGAGAGAAGAAGCTCAGAATAGCACCTCCCTGCATTaGAGACTCCATCACAGATAC +
Preference number: 4 (lower is better)
Translates to: ECHHPAIWSGYVREEAQNSTSLH*RLHHRY
Trigger: GTATCTGTGATGGAGTCTTCAATGCAGGGAGGTGCT...ATTCTGAGCTTCTTCTCTCACATATCCAGACCAAATGGCAGGATGGTGGCACTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp GAGTGCCACCATCCTGCCATTTGGTCTGGATATGTGAGAGAAGAAGCTCAGAATCCAGCTTTTCCAGAATaGGTTCACACTGCCTCTGGT +
Preference number: 4 (lower is better)
Translates to: ECHHPAIWSGYVREEAQNPAFPE*VHTASG
Trigger: ACCAGAGGCAGTGTGAACTCATTCTGGAAAAGCTGG...ATTCTGAGCTTCTTCTCTCACATATCCAGACCAAATGGCAGGATGGTGGCACTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp AAAGCACTTAGCTGCCTTGTTAGATTTCTGAGTGCCACCATCCTGCCATTTGGTCTGTTCCTGCTGTGTTaGAGTCCTGAGCCTTGGCTT +
Preference number: 4 (lower is better)
Translates to: KALSCLVRFLSATILPFGLFLLC*SPEPWL
Trigger: AAGCCAAGGCTCAGGACTTCAACACAGCAGGAACAG...ACCAAATGGCAGGATGGTGGCACTCAGAAATCTAACAAGGCAGCTAAGTGCTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp CAAAGCAAACAGAAAGCACTTAGCTGCCTTGTTAGATTTCTGAGTGCCACCATCGTCTGGTGGCTGCCTTaGGAGCTCCTTTGTCTTTCC +
Preference number: 4 (lower is better)
Translates to: QSKQKALSCLVRFLSATIVWWLP*ELLCLS
Trigger: GGAAAGACAAAGGAGCTCTCAAGGCAGCCACCAGAC...GATGGTGGCACTCAGAAATCTAACAAGGCAGCTAAGTGCTTTCTGTTTGCTTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp GAAAGGCAAGGCGTGCGTGCTGGCACAAGGGGAACAAATCCAAGGGCCAGTGTTTTTTCATCTTCTCCATaGTCCACAGATTCTCTGATT +
Preference number: 4 (lower is better)
Translates to: ERQGVRAGTRGTNPRASVFSSSP*STDSLI
Trigger: AATCAGAGAATCTGTGGAGCATGGAGAAGATGAAAA...AACACTGGCCCTTGGATTTGTTCCCCTTGTGCCAGCACGCACGCCTTGCCTTTC
49% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp GAGTGCCACCATCCTGCCATTTGGTCTGGATATGTGAGAGAAGAAGCTCAGAATCTCTGGTTGTGCTTCTaGACACATTCTGTGACCCCT +
Preference number: 4 (lower is better)
Translates to: ECHHPAIWSGYVREEAQNLWLCF*THSVTP
Trigger: AGGGGTCACAGAATGTGTGCAGAAGCACAACCAGAG...ATTCTGAGCTTCTTCTCTCACATATCCAGACCAAATGGCAGGATGGTGGCACTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp ATGAAGATGAACCTGACAAGGGAGTTGGGCTTCGGCAGGGCCACGCACGTACTATTTAGAACTGTCAACTaGTATTTCACTAGCACTGGG +
Preference number: 4 (lower is better)
Translates to: MKMNLTRELGFGRATHVLFRTVN*YFTSTG
Trigger: CCCAGTGCTAGTGAAATAGCAGTTGACAGTTCTAAA...TAGTACGTGCGTGGCCCTGCCGAAGCCCAACTCCCTTGTCAGGTTCATCTTCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp CACCATCCTGCCATTTGGTCTGGATATGTGAGAGAAGAAGCTCAGAATAGAACTTGTCCCTGCTGTCCCTaGTGTCCTTCCTTTCAGGAG +
Preference number: 4 (lower is better)
Translates to: HHPAIWSGYVREEAQNRTCPCCP*CPSFQE
Trigger: CTCCTGAAAGGAAGGACAGCAGGGACAGCAGGGACA...AGTTCTATTCTGAGCTTCTTCTCTCACATATCCAGACCAAATGGCAGGATGGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp ATGGTGATGATGCACAGGAGAGCCATGGGATGCAGGTTATGCGGTGCCTTCACAGCAAACCTGATATCCTaGCATGAAGATTCTGCTTCA +
Preference number: 4 (lower is better)
Translates to: MVMMHRRAMGCRLCGAFTANLIS*HEDSAS
Trigger: TGAAGCAGAATCTTCATGCCAGGATATCAGGTTTGC...TGTGAAGGCACCGCATAACCTGCATCCCATGGCTCTCCTGTGCATCATCACCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000218549.3
ENSMUST00000219838.3
CDS-3UTR CCA 90 bp AAAGCACTTAGCTGCCTTGTTAGATTTCTGAGTGCCACCATCCTGCCATTTGGTTCAGACAGTGTGGGGTaGAGATTCCGAATGAGGCAG +
Preference number: 4 (lower is better)
Translates to: KALSCLVRFLSATILPFGSDSVG*RFRMRQ
Trigger: CTGCCTCATTCGGAATCTCCACCCCACACTGTCTGA...ACCAAATGGCAGGATGGTGGCACTCAGAAATCTAACAAGGCAGCTAAGTGCTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp GAGTGCCACCATCCTGCCATTTGGTCTGGATATGTGAGAGAAGAAGCTCAGAATTCAGGGAAGGAAGTGTaGAGAGCATTCACACCTCCT +
Preference number: 4 (lower is better)
Translates to: ECHHPAIWSGYVREEAQNSGKEV*RAFTPP
Trigger: AGGAGGTGTGAATGCTCTCCACACTTCCTTCCCTGA...ATTCTGAGCTTCTTCTCTCACATATCCAGACCAAATGGCAGGATGGTGGCACTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp ATGAAGATGAACCTGACAAGGGAGTTGGGCTTCGGCAGGGCCACGCACGTACTATCCGTCTCTTTCTTTTaGGTGTTCCTGATCTTTTTC +
Preference number: 4 (lower is better)
Translates to: MKMNLTRELGFGRATHVLSVSFF*VFLIFF
Trigger: GAAAAAGATCAGGAACACCCAAAAGAAAGAGACGGA...TAGTACGTGCGTGGCCCTGCCGAAGCCCAACTCCCTTGTCAGGTTCATCTTCAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp AAAGCACTTAGCTGCCTTGTTAGATTTCTGAGTGCCACCATCCTGCCATTTGGTATCTGTCTCCTGAGGTaGATGTCGACTTTCCTGGCG +
Preference number: 4 (lower is better)
Translates to: KALSCLVRFLSATILPFGICLLR*MSTFLA
Trigger: CGCCAGGAAAGTCGACATCCACCTCAGGAGACAGAT...ACCAAATGGCAGGATGGTGGCACTCAGAAATCTAACAAGGCAGCTAAGTGCTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp ATTTCTGAGTGCCACCATCCTGCCATTTGGTCTGGATATGTGAGAGAAGAAGCTGTCTTTCCGTGCAGCTaGTCAGAGCATCTGTCTCCT +
Preference number: 4 (lower is better)
Translates to: ISECHHPAIWSGYVREEAVFPCS*SEHLSP
Trigger: AGGAGACAGATGCTCTGACCAGCTGCACGGAAAGAC...AGCTTCTTCTCTCACATATCCAGACCAAATGGCAGGATGGTGGCACTCAGAAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp AAAGCACTTAGCTGCCTTGTTAGATTTCTGAGTGCCACCATCCTGCCATTTGGTGTCTTTCCGTGCAGCTaGTCAGAGCATCTGTCTCCT +
Preference number: 4 (lower is better)
Translates to: KALSCLVRFLSATILPFGVFPCS*SEHLSP
Trigger: AGGAGACAGATGCTCTGACCAGCTGCACGGAAAGAC...ACCAAATGGCAGGATGGTGGCACTCAGAAATCTAACAAGGCAGCTAAGTGCTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp GGATATGTGAGAGAAGAAGCTCAGAATAGAACTCCTCTAGTAAAAACCAAACCATTGCTGGCCGAGCACTaGAGCTGTGGTCGCAGGAGG +
Preference number: 4 (lower is better)
Translates to: GYVREEAQNRTPLVKTKPLLAEH*SCGRRR
Trigger: CCTCCTGCGACCACAGCTCCAGTGCTCGGCCAGCAA...TGGTTTGGTTTTTACTAGAGGAGTTCTATTCTGAGCTTCTTCTCTCACATATCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp ACATCAGCCACAAGGATTTCTAAGTGTGTAGGGGTAGCTCTTTATAGGCCAACCGGATCACTGTCCCAGTaGCAGATAAGAAGTGTCCCA +
Preference number: 4 (lower is better)
Translates to: TSATRISKCVGVALYRPTGSLSQ*QIRSVP
Trigger: TGGGACACTTCTTATCTGTCACTGGGACAGTGATCC...GGTTGGCCTATAAAGAGCTACCCCTACACACTTAGAAATCCTTGTGGCTGATGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
CDS-3UTR TCA 90 bp ATTTCTGAGTGCCACCATCCTGCCATTTGGTCTGGATATGTGAGAGAAGAAGCTATGACGATGGCCGACTaGAGGTGTAATACTGCTCGA +
Preference number: 4 (lower is better)
Translates to: ISECHHPAIWSGYVREEAMTMAD*RCNTAR
Trigger: TCGAGCAGTATTACACCTTCAGTCGGCCATCGTCAT...AGCTTCTTCTCTCACATATCCAGACCAAATGGCAGGATGGTGGCACTCAGAAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp AGTGCTTGGCATGCCACAGGATTGGTTGGCAATCATTTCATGTCACATCAGCCACCTGCTCCTGAATTTTaGTTTCCTGGTAATCCCGAC +
Preference number: 4 (lower is better)
Translates to: SAWHATGLVGNHFMSHQPPAPEF*FPGNPD
Trigger: GTCGGGATTACCAGGAAATCAAAATTCAGGAGCAGG...TGGCTGATGTGACATGAAATGATTGCCAACCAATCCTGTGGCATGCCAAGCACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
CDS-3UTR TCA 90 bp ATTTCTGAGTGCCACCATCCTGCCATTTGGTCTGGATATGTGAGAGAAGAAGCTCCAGCTTTTCCAGAATaGGTTCACACTGCCTCTGGT +
Preference number: 4 (lower is better)
Translates to: ISECHHPAIWSGYVREEAPAFPE*VHTASG
Trigger: ACCAGAGGCAGTGTGAACTCATTCTGGAAAAGCTGG...AGCTTCTTCTCTCACATATCCAGACCAAATGGCAGGATGGTGGCACTCAGAAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp CACCATCCTGCCATTTGGTCTGGATATGTGAGAGAAGAAGCTCAGAATAGAACTCTGTTCCTGCTGTGTTaGAGTCCTGAGCCTTGGCTT +
Preference number: 4 (lower is better)
Translates to: HHPAIWSGYVREEAQNRTLFLLC*SPEPWL
Trigger: AAGCCAAGGCTCAGGACTTCAACACAGCAGGAACAG...AGTTCTATTCTGAGCTTCTTCTCTCACATATCCAGACCAAATGGCAGGATGGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp AGTCCCTCTGACTATGGTGTATGCTTCCTTACATCTAAAACTGGGAAACCACGAAGGAAAGCACCCACGTaGGTCCAGCAGGAAGATCAT +
Preference number: 4 (lower is better)
Translates to: SPSDYGVCFLTSKTGKPRRKAPT*VQQEDH
Trigger: ATGATCTTCCTGCTGGACTCACGTGGGTGCTTTCCT...TCGTGGTTTCCCAGTTTTAGATGTAAGGAAGCATACACCATAGTCAGAGGGACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218549.3
CDS-3UTR CCA 90 bp AGGGTTTTTCTAGGCCACCCCAGTGCATCTTACCACAACTTGTGTTACACCAGAAGTGTCCCACATCCTTaGTTTTGGGAATGTGTTCCC +
Preference number: 4 (lower is better)
Translates to: RVFLGHPSASYHNLCYTRSVPHP*FWECVP
Trigger: GGGAACACATTCCCAAAACCAAGGATGTGGGACACT...TCTGGTGTAACACAAGTTGTGGTAAGATGCACTGGGGTGGCCTAGAAAAACCCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000218549.3
CDS-3UTR CCA 90 bp AAAGCACTTAGCTGCCTTGTTAGATTTCTGAGTGCCACCATCCTGCCATTTGGTTCCTTGGGGTCATACTaGCCTTTGGGGTTAGTTGCT +
Preference number: 4 (lower is better)
Translates to: KALSCLVRFLSATILPFGSLGSY*PLGLVA
Trigger: AGCAACTAACCCCAAAGGCCAGTATGACCCCAAGGA...ACCAAATGGCAGGATGGTGGCACTCAGAAATCTAACAAGGCAGCTAAGTGCTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp CAAAGCAAACAGAAAGCACTTAGCTGCCTTGTTAGATTTCTGAGTGCCACCATCGCCTTGGCTTGTCCCTaGGATCATTTCTGCAGGAAC +
Preference number: 4 (lower is better)
Translates to: QSKQKALSCLVRFLSATIALACP*DHFCRN
Trigger: GTTCCTGCAGAAATGATCCCAGGGACAAGCCAAGGC...GATGGTGGCACTCAGAAATCTAACAAGGCAGCTAAGTGCTTTCTGTTTGCTTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp CACCATCCTGCCATTTGGTCTGGATATGTGAGAGAAGAAGCTCAGAATAGAACTGCCTTGGCTTGTCCCTaGGATCATTTCTGCAGGAAC +
Preference number: 4 (lower is better)
Translates to: HHPAIWSGYVREEAQNRTALACP*DHFCRN
Trigger: GTTCCTGCAGAAATGATCCCAGGGACAAGCCAAGGC...AGTTCTATTCTGAGCTTCTTCTCTCACATATCCAGACCAAATGGCAGGATGGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp TCACACCAACCGCAATTAATTATTCAGCATTTAGGTGATGAAGATGAACCTGACCAGAGGGACAGTGGGTaGCAGTGGTCGCACTCTGGT +
Preference number: 4 (lower is better)
Translates to: SHQPQLIIQHLGDEDEPDQRDSG*QWSHSG
Trigger: ACCAGAGTGCGACCACTGCCACCCACTGTCCCTCTG...GTCAGGTTCATCTTCATCACCTAAATGCTGAATAATTAATTGCGGTTGGTGTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp CTTCTTCTGAGCCATATCCCAACCCAACGTTCTTGGTTTTATAAAAAGACAAACCAGAGGGACAGTGGGTaGCAGTGGTCGCACTCTGGT +
Preference number: 4 (lower is better)
Translates to: LLLSHIPTQRSWFYKKTNQRDSG*QWSHSG
Trigger: ACCAGAGTGCGACCACTGCCACCCACTGTCCCTCTG...GTTTGTCTTTTTATAAAACCAAGAACGTTGGGTTGGGATATGGCTCAGAAGAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp CACCATCCTGCCATTTGGTCTGGATATGTGAGAGAAGAAGCTCAGAATAGAACTTTGCCAGTCTGGCTATaGTGCCAGCATGAACCTTGC +
Preference number: 4 (lower is better)
Translates to: HHPAIWSGYVREEAQNRTLPVWL*CQHEPC
Trigger: GCAAGGTTCATGCTGGCACCATAGCCAGACTGGCAA...AGTTCTATTCTGAGCTTCTTCTCTCACATATCCAGACCAAATGGCAGGATGGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp CAGGGTTTTTCTAGGCCACCCCAGTGCATCTTACCACAACTTGTGTTACACCAGACAAACAGGCAAACCTaGTATCCTGGCATGAAGATT +
Preference number: 4 (lower is better)
Translates to: QGFSRPPQCILPQLVLHQTNRQT*YPGMKI
Trigger: AATCTTCATGCCAGGATATCAGGTTTGCCTGTTTGT...CTGGTGTAACACAAGTTGTGGTAAGATGCACTGGGGTGGCCTAGAAAAACCCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000218549.3
CDS-3UTR TCA 90 bp CAAAGCAAACAGAAAGCACTTAGCTGCCTTGTTAGATTTCTGAGTGCCACCATCGGATCACTGTCCCAGTaGCAGATAAGAAGTGTCCCA +
Preference number: 4 (lower is better)
Translates to: QSKQKALSCLVRFLSATIGSLSQ*QIRSVP
Trigger: TGGGACACTTCTTATCTGTCACTGGGACAGTGATCC...GATGGTGGCACTCAGAAATCTAACAAGGCAGCTAAGTGCTTTCTGTTTGCTTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp ACATCAGCCACAAGGATTTCTAAGTGTGTAGGGGTAGCTCTTTATAGGCCAACCAGTCTGCCTCCACCATaGACACATGCTTGCATTTGT +
Preference number: 4 (lower is better)
Translates to: TSATRISKCVGVALYRPTSLPPP*THACIC
Trigger: ACAAATGCAAGCATGTGTTCATGGTGGAGGCAGACT...GGTTGGCCTATAAAGAGCTACCCCTACACACTTAGAAATCCTTGTGGCTGATGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
CDS-3UTR TCA 90 bp GAGTGCCACCATCCTGCCATTTGGTCTGGATATGTGAGAGAAGAAGCTCAGAATTTCCGATTTGGATTCTaGTGGGGAAGTGAAGGAGAA +
Preference number: 4 (lower is better)
Translates to: ECHHPAIWSGYVREEAQNFRFGF*WGSEGE
Trigger: TTCTCCTTCACTTCCCCATCAGAATCCAAATCGGAA...ATTCTGAGCTTCTTCTCTCACATATCCAGACCAAATGGCAGGATGGTGGCACTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp CAAAGCAAACAGAAAGCACTTAGCTGCCTTGTTAGATTTCTGAGTGCCACCATCAGAATGAGTTCACACTaGCTCTGGTACTGTGCACGG +
Preference number: 4 (lower is better)
Translates to: QSKQKALSCLVRFLSATIRMSSH*LWYCAR
Trigger: CCGTGCACAGTACCAGAGGCAGTGTGAACTCATTCT...GATGGTGGCACTCAGAAATCTAACAAGGCAGCTAAGTGCTTTCTGTTTGCTTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp GGCAAGTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCAGGACCCTGGGATCATTTCTaGAGGAACCTGGAGCCACCT +
Preference number: 4 (lower is better)
Translates to: GKSFQMLINTAFSTYWAGPWDHF*RNLEPP
Trigger: AGGTGGCTCCAGGTTCCTGCAGAAATGATCCCAGGG...TCCTGCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGACTTGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp TTTCGGCAAGTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCCAGGCTAGATGCGAATaGCCAGCCTGGTTCCCAAGC +
Preference number: 4 (lower is better)
Translates to: FRQVIPNVNKHRIQYILGQARCE*PAWFPS
Trigger: GCTTGGGAACCAGGCTGGGCATTCGCATCTAGCCTG...GCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGACTTGCCGAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp GTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCAGGAAATGCCAGGCTAGATGCGAATaGCCAGCCTGGTTCCCAAGC +
Preference number: 4 (lower is better)
Translates to: VIPNVNKHRIQYILGRKCQARCE*PAWFPS
Trigger: GCTTGGGAACCAGGCTGGGCATTCGCATCTAGCCTG...GCATTTCCTGCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp CTTCTTCTGAGCCATATCCCAACCCAACGTTCTTGGTTTTATAAAAAGACAAACCAGGCTAGATGCGAATaGCCAGCCTGGTTCCCAAGC +
Preference number: 4 (lower is better)
Translates to: LLLSHIPTQRSWFYKKTNQARCE*PAWFPS
Trigger: GCTTGGGAACCAGGCTGGGCATTCGCATCTAGCCTG...GTTTGTCTTTTTATAAAACCAAGAACGTTGGGTTGGGATATGGCTCAGAAGAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp TTCGGCAAGTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCAGCTCTCTCTGTGGGCTaGTGCAGCTGGAAAGTCTGC +
Preference number: 4 (lower is better)
Translates to: FGKSFQMLINTAFSTYWAALSVG*CSWKVC
Trigger: GCAGACTTTCCAGCTGCAGCAGCCCACAGAGAGAGC...TGCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGACTTGCCGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp ACATCAGCCACAAGGATTTCTAAGTGTGTAGGGGTAGCTCTTTATAGGCCAACCTTGAGGAGTCACAGCTaGCTAAACTTGGACATGACG +
Preference number: 4 (lower is better)
Translates to: TSATRISKCVGVALYRPTLRSHS*LNLDMT
Trigger: CGTCATGTCCAAGTTTAGCCAGCTGTGACTCCTCAA...GGTTGGCCTATAAAGAGCTACCCCTACACACTTAGAAATCCTTGTGGCTGATGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
CDS-3UTR CCA 90 bp GGAGAGCCATGGGATGCAGGTTATGCGGTGCCTTCACATCTAAGCTTTTATACTGGTCAAAACGGACCTTaGGGTAATCTTTGCTGCATA +
Preference number: 4 (lower is better)
Translates to: GEPWDAGYAVPSHLSFYTGQNGP*GNLCCI
Trigger: TATGCAGCAAAGATTACCCCAAGGTCCGTTTTGACC...AGTATAAAAGCTTAGATGTGAAGGCACCGCATAACCTGCATCCCATGGCTCTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
CDS-3UTR CCA 90 bp CACCATCCTGCCATTTGGTCTGGATATGTGAGAGAAGAAGCTCAGAATAGAACTTTGCTGCCAGGATGGTaGTCCTTGTGTTCAGCTTAC +
Preference number: 4 (lower is better)
Translates to: HHPAIWSGYVREEAQNRTLLPGW*SLCSAY
Trigger: GTAAGCTGAACACAAGGACCACCATCCTGGCAGCAA...AGTTCTATTCTGAGCTTCTTCTCTCACATATCCAGACCAAATGGCAGGATGGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp CAAAGCAAACAGAAAGCACTTAGCTGCCTTGTTAGATTTCTGAGTGCCACCATCTCAGGGAAGGAAGTGTaGAGAGCATTCACACCTCCT +
Preference number: 4 (lower is better)
Translates to: QSKQKALSCLVRFLSATISGKEV*RAFTPP
Trigger: AGGAGGTGTGAATGCTCTCCACACTTCCTTCCCTGA...GATGGTGGCACTCAGAAATCTAACAAGGCAGCTAAGTGCTTTCTGTTTGCTTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp CGCTACATATACATTCTTCTTCTGAGCCATATCCCAACCCAACGTTCTTGGTTTAGTTCACACTGCCTCTaGTACTGTGCACGGGGGTTT +
Preference number: 4 (lower is better)
Translates to: RYIYILLLSHIPTQRSWFSSHCL*YCARGF
Trigger: AAACCCCCGTGCACAGTACCAGAGGCAGTGTGAACT...AAACCAAGAACGTTGGGTTGGGATATGGCTCAGAAGAAGAATGTATATGTAGCG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp CGCTACATATACATTCTTCTTCTGAGCCATATCCCAACCCAACGTTCTTGGTTTGCCTTGGCTTGTCCCTaGGATCATTTCTGCAGGAAC +
Preference number: 4 (lower is better)
Translates to: RYIYILLLSHIPTQRSWFALACP*DHFCRN
Trigger: GTTCCTGCAGAAATGATCCCAGGGACAAGCCAAGGC...AAACCAAGAACGTTGGGTTGGGATATGGCTCAGAAGAAGAATGTATATGTAGCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp GAGTGCCACCATCCTGCCATTTGGTCTGGATATGTGAGAGAAGAAGCTCAGAATACAAACAGGCAAACCTaGTATCCTGGCATGAAGATT +
Preference number: 4 (lower is better)
Translates to: ECHHPAIWSGYVREEAQNTNRQT*YPGMKI
Trigger: AATCTTCATGCCAGGATATCAGGTTTGCCTGTTTGT...ATTCTGAGCTTCTTCTCTCACATATCCAGACCAAATGGCAGGATGGTGGCACTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp CACCATCCTGCCATTTGGTCTGGATATGTGAGAGAAGAAGCTCAGAATAGAACTAGTCTGCCTCCACCATaGACACATGCTTGCATTTGT +
Preference number: 4 (lower is better)
Translates to: HHPAIWSGYVREEAQNRTSLPPP*THACIC
Trigger: ACAAATGCAAGCATGTGTTCATGGTGGAGGCAGACT...AGTTCTATTCTGAGCTTCTTCTCTCACATATCCAGACCAAATGGCAGGATGGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp GAAGTCCCTCTGACTATGGTGTATGCTTCCTTACATCTAAAACTGGGAAACCACCCTGCTCCTGAATTTTaGTTTCCTGGTAATCCCGAC +
Preference number: 4 (lower is better)
Translates to: EVPLTMVYASLHLKLGNHPAPEF*FPGNPD
Trigger: GTCGGGATTACCAGGAAATCAAAATTCAGGAGCAGG...GTGGTTTCCCAGTTTTAGATGTAAGGAAGCATACACCATAGTCAGAGGGACTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218549.3
CDS-3UTR TCA 90 bp AGTCCCTCTGACTATGGTGTATGCTTCCTTACATCTAAAACTGGGAAACCACGACCAACCAATAAAAGGTaGGATTCCCCTCTAACCCTG +
Preference number: 4 (lower is better)
Translates to: SPSDYGVCFLTSKTGKPRPTNKR*DSPLTL
Trigger: CAGGGTTAGAGGGGAATCTCACCTTTTATTGGTTGG...TCGTGGTTTCCCAGTTTTAGATGTAAGGAAGCATACACCATAGTCAGAGGGACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000218549.3
CDS-3UTR TCA 90 bp GGCAAGTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCAGGACTGTTCCTGCTGTGTTaGAGTCCTGAGCCTTGGCTT +
Preference number: 4 (lower is better)
Translates to: GKSFQMLINTAFSTYWAGLFLLC*SPEPWL
Trigger: AAGCCAAGGCTCAGGACTTCAACACAGCAGGAACAG...TCCTGCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGACTTGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp AAAGCACTTAGCTGCCTTGTTAGATTTCTGAGTGCCACCATCCTGCCATTTGGTGCTATGGTGCCAGCATaGACCTTGCTGCTTTTATTA +
Preference number: 4 (lower is better)
Translates to: KALSCLVRFLSATILPFGAMVPA*TLLLLL
Trigger: TAATAAAAGCAGCAAGGTTCATGCTGGCACCATAGC...ACCAAATGGCAGGATGGTGGCACTCAGAAATCTAACAAGGCAGCTAAGTGCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp ATTTCTGAGTGCCACCATCCTGCCATTTGGTCTGGATATGTGAGAGAAGAAGCTGCTATGGTGCCAGCATaGACCTTGCTGCTTTTATTA +
Preference number: 4 (lower is better)
Translates to: ISECHHPAIWSGYVREEAAMVPA*TLLLLL
Trigger: TAATAAAAGCAGCAAGGTTCATGCTGGCACCATAGC...AGCTTCTTCTCTCACATATCCAGACCAAATGGCAGGATGGTGGCACTCAGAAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp AGTCCCTCTGACTATGGTGTATGCTTCCTTACATCTAAAACTGGGAAACCACGAATACTGCTCGAAGTCTaGCTCCACCATGAACACATG +
Preference number: 4 (lower is better)
Translates to: SPSDYGVCFLTSKTGKPRILLEV*LHHEHM
Trigger: CATGTGTTCATGGTGGAGGCAGACTTCGAGCAGTAT...TCGTGGTTTCCCAGTTTTAGATGTAAGGAAGCATACACCATAGTCAGAGGGACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218549.3
CDS-3UTR GCA 90 bp GTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCAGGAAATGCGCCTTTGGGGTTAGTTaGTGCCAGGATGGTGGTCCT +
Preference number: 4 (lower is better)
Translates to: VIPNVNKHRIQYILGRKCAFGVS*CQDGGP
Trigger: AGGACCACCATCCTGGCAGCAACTAACCCCAAAGGC...GCATTTCCTGCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp TTTCGGCAAGTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCCCCTGGGATCATTTCTaGAGGAACCTGGAGCCACCT +
Preference number: 4 (lower is better)
Translates to: FRQVIPNVNKHRIQYILGPWDHF*RNLEPP
Trigger: AGGTGGCTCCAGGTTCCTGCAGAAATGATCCCAGGG...GCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGACTTGCCGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp CGCTACATATACATTCTTCTTCTGAGCCATATCCCAACCCAACGTTCTTGGTTTCTCTGGTTGTGCTTCTaGACACATTCTGTGACCCCT +
Preference number: 4 (lower is better)
Translates to: RYIYILLLSHIPTQRSWFLWLCF*THSVTP
Trigger: AGGGGTCACAGAATGTGTGCAGAAGCACAACCAGAG...AAACCAAGAACGTTGGGTTGGGATATGGCTCAGAAGAAGAATGTATATGTAGCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp GAGTGCCACCATCCTGCCATTTGGTCTGGATATGTGAGAGAAGAAGCTCAGAATCAGCATGAACCTTGCTaGTTTTATTACCGCAGGAAA +
Preference number: 4 (lower is better)
Translates to: ECHHPAIWSGYVREEAQNQHEPC*FYYRRK
Trigger: TTTCCTGCGGTAATAAAAGCAGCAAGGTTCATGCTG...ATTCTGAGCTTCTTCTCTCACATATCCAGACCAAATGGCAGGATGGTGGCACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp CACCATCCTGCCATTTGGTCTGGATATGTGAGAGAAGAAGCTCAGAATAGAACTTGCCAGCATGAACCTTaGTGCTTTTATTACCGCAGG +
Preference number: 4 (lower is better)
Translates to: HHPAIWSGYVREEAQNRTCQHEP*CFYYRR
Trigger: CCTGCGGTAATAAAAGCAGCAAGGTTCATGCTGGCA...AGTTCTATTCTGAGCTTCTTCTCTCACATATCCAGACCAAATGGCAGGATGGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp CAAAGCAAACAGAAAGCACTTAGCTGCCTTGTTAGATTTCTGAGTGCCACCATCTGCCAGCATGAACCTTaGTGCTTTTATTACCGCAGG +
Preference number: 4 (lower is better)
Translates to: QSKQKALSCLVRFLSATICQHEP*CFYYRR
Trigger: CCTGCGGTAATAAAAGCAGCAAGGTTCATGCTGGCA...GATGGTGGCACTCAGAAATCTAACAAGGCAGCTAAGTGCTTTCTGTTTGCTTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp TTCGGCAAGTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCATGTCCCTGCTGTCCCTaGTGTCCTTCCTTTCAGGAG +
Preference number: 4 (lower is better)
Translates to: FGKSFQMLINTAFSTYWACPCCP*CPSFQE
Trigger: CTCCTGAAAGGAAGGACAGCAGGGACAGCAGGGACA...TGCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGACTTGCCGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp TCACACCAACCGCAATTAATTATTCAGCATTTAGGTGATGAAGATGAACCTGACCTCTCTGTGGGCTGCTaGAGCTGGAAAGTCTGCCTT +
Preference number: 4 (lower is better)
Translates to: SHQPQLIIQHLGDEDEPDLSVGC*SWKVCL
Trigger: AAGGCAGACTTTCCAGCTGCAGCAGCCCACAGAGAG...GTCAGGTTCATCTTCATCACCTAAATGCTGAATAATTAATTGCGGTTGGTGTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp TTCGGCAAGTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCACTCTCTGTGGGCTGCTaGAGCTGGAAAGTCTGCCTT +
Preference number: 4 (lower is better)
Translates to: FGKSFQMLINTAFSTYWALSVGC*SWKVCL
Trigger: AAGGCAGACTTTCCAGCTGCAGCAGCCCACAGAGAG...TGCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGACTTGCCGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp GAAGTCCCTCTGACTATGGTGTATGCTTCCTTACATCTAAAACTGGGAAACCACTTGAGGAGTCACAGCTaGCTAAACTTGGACATGACG +
Preference number: 4 (lower is better)
Translates to: EVPLTMVYASLHLKLGNHLRSHS*LNLDMT
Trigger: CGTCATGTCCAAGTTTAGCCAGCTGTGACTCCTCAA...GTGGTTTCCCAGTTTTAGATGTAAGGAAGCATACACCATAGTCAGAGGGACTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218549.3
CDS-3UTR CCA 90 bp TGCCAAGCCTACTATTTCATTCAATTCAATACCCAGGACTCACATGGTAGAAACCACCAGCCAGTACCATaGCCACAGCAAGCTTCACTA +
Preference number: 4 (lower is better)
Translates to: CQAYYFIQFNTQDSHGRNHQPVP*PQQASL
Trigger: TAGTGAAGCTTGCTGTGGCCATGGTACTGGCTGGTG...GTTTCTACCATGTGAGTCCTGGGTATTGAATTGAATGAAATAGTAGGCTTGGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
CDS-3UTR CCA 90 bp AAAGCACTTAGCTGCCTTGTTAGATTTCTGAGTGCCACCATCCTGCCATTTGGTGGTCAAAACGGACCTTaGGGTAATCTTTGCTGCATA +
Preference number: 4 (lower is better)
Translates to: KALSCLVRFLSATILPFGGQNGP*GNLCCI
Trigger: TATGCAGCAAAGATTACCCCAAGGTCCGTTTTGACC...ACCAAATGGCAGGATGGTGGCACTCAGAAATCTAACAAGGCAGCTAAGTGCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp GGCAAGTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCAGGATCAGACAGTGTGGGGTaGAGATTCCGAATGAGGCAG +
Preference number: 4 (lower is better)
Translates to: GKSFQMLINTAFSTYWAGSDSVG*RFRMRQ
Trigger: CTGCCTCATTCGGAATCTCCACCCCACACTGTCTGA...TCCTGCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGACTTGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp GGCAAGTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCAGGATGGCCTTCGGGGGAGTaGGTCAGTTTTGTCTTCTGT +
Preference number: 4 (lower is better)
Translates to: GKSFQMLINTAFSTYWAGWPSGE*VSFVFC
Trigger: ACAGAAGACAAAACTGACCCACTCCCCCGAAGGCCA...TCCTGCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGACTTGCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp GGCAAGTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCAGGATTGCCAGTCTGGCTATaGTGCCAGCATGAACCTTGC +
Preference number: 4 (lower is better)
Translates to: GKSFQMLINTAFSTYWAGLPVWL*CQHEPC
Trigger: GCAAGGTTCATGCTGGCACCATAGCCAGACTGGCAA...TCCTGCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGACTTGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp GAGTGCCACCATCCTGCCATTTGGTCTGGATATGTGAGAGAAGAAGCTCAGAATGTTCTTATGGTACTCTaGAACATAGGACTCAAACAC +
Preference number: 4 (lower is better)
Translates to: ECHHPAIWSGYVREEAQNVLMVL*NIGLKH
Trigger: GTGTTTGAGTCCTATGTTTCAGAGTACCATAAGAAC...ATTCTGAGCTTCTTCTCTCACATATCCAGACCAAATGGCAGGATGGTGGCACTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp AGGGTTTTTCTAGGCCACCCCAGTGCATCTTACCACAACTTGTGTTACACCAGAGTTCTTATGGTACTCTaGAACATAGGACTCAAACAC +
Preference number: 4 (lower is better)
Translates to: RVFLGHPSASYHNLCYTRVLMVL*NIGLKH
Trigger: GTGTTTGAGTCCTATGTTTCAGAGTACCATAAGAAC...TCTGGTGTAACACAAGTTGTGGTAAGATGCACTGGGGTGGCCTAGAAAAACCCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000218549.3
CDS-3UTR TCA 90 bp ATGGTTCAGATCTGCTCTTTCTTTCAGTTTACAGAAATGCCGAACTTACAAGGGTGGGAATGTGTTCCCTaGCCAGTTCTGGACAAACAG +
Preference number: 4 (lower is better)
Translates to: MVQICSFFQFTEMPNLQGWECVP*PVLDKQ
Trigger: CTGTTTGTCCAGAACTGGTCAGGGAACACATTCCCA...CCCTTGTAAGTTCGGCATTTCTGTAAACTGAAAGAAAGAGCAGATCTGAACCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218549.3
CDS-3UTR TCA 90 bp GGTTCAGATCTGCTCTTTCTTTCAGTTTACAGAAATGCCGAACTTACAAGGGTAGGATCACTGTCCCAGTaGCAGATAAGAAGTGTCCCA +
Preference number: 4 (lower is better)
Translates to: GSDLLFLSVYRNAELTRVGSLSQ*QIRSVP
Trigger: TGGGACACTTCTTATCTGTCACTGGGACAGTGATCC...TACCCTTGTAAGTTCGGCATTTCTGTAAACTGAAAGAAAGAGCAGATCTGAACC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218549.3
CDS-3UTR TCA 90 bp ATGGTTCAGATCTGCTCTTTCTTTCAGTTTACAGAAATGCCGAACTTACAAGGGATGACGATGGCCGACTaGAGGTGTAATACTGCTCGA +
Preference number: 4 (lower is better)
Translates to: MVQICSFFQFTEMPNLQGMTMAD*RCNTAR
Trigger: TCGAGCAGTATTACACCTTCAGTCGGCCATCGTCAT...CCCTTGTAAGTTCGGCATTTCTGTAAACTGAAAGAAAGAGCAGATCTGAACCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218549.3
CDS-3UTR TCA 90 bp CACCATCCTGCCATTTGGTCTGGATATGTGAGAGAAGAAGCTCAGAATAGAACTTATCGAAGGAGGACTTaGTTGCTCACTTCAGACAGT +
Preference number: 4 (lower is better)
Translates to: HHPAIWSGYVREEAQNRTYRRRT*LLTSDS
Trigger: ACTGTCTGAAGTGAGCAATCAAGTCCTCCTTCGATA...AGTTCTATTCTGAGCTTCTTCTCTCACATATCCAGACCAAATGGCAGGATGGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp GTTAATAAACACCGCATTCAGTACATATTGGGCAGGAAATGCAAAGCAAACAGACTGTTCCTGCTGTGTTaGAGTCCTGAGCCTTGGCTT +
Preference number: 4 (lower is better)
Translates to: VNKHRIQYILGRKCKANRLFLLC*SPEPWL
Trigger: AAGCCAAGGCTCAGGACTTCAACACAGCAGGAACAG...TCTGTTTGCTTTGCATTTCCTGCCCAATATGTACTGAATGCGGTGTTTATTAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp ATTTCTGAGTGCCACCATCCTGCCATTTGGTCTGGATATGTGAGAGAAGAAGCTTGCTTCTCCTTGCCCTaGGATTTATTGTTGGAGATT +
Preference number: 4 (lower is better)
Translates to: ISECHHPAIWSGYVREEACFSLP*DLLLEI
Trigger: AATCTCCAACAATAAATCTCAGGGCAAGGAGAAGCA...AGCTTCTTCTCTCACATATCCAGACCAAATGGCAGGATGGTGGCACTCAGAAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp TCACACCAACCGCAATTAATTATTCAGCATTTAGGTGATGAAGATGAACCTGACTCTGCACACATTCTGTaGCCCCTCCTTCAGCAGCTT +
Preference number: 4 (lower is better)
Translates to: SHQPQLIIQHLGDEDEPDSAHIL*PLLQQL
Trigger: AAGCTGCTGAAGGAGGGGTCACAGAATGTGTGCAGA...GTCAGGTTCATCTTCATCACCTAAATGCTGAATAATTAATTGCGGTTGGTGTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp GGATATGTGAGAGAAGAAGCTCAGAATAGAACTCCTCTAGTAAAAACCAAACCATCTGCACACATTCTGTaGCCCCTCCTTCAGCAGCTT +
Preference number: 4 (lower is better)
Translates to: GYVREEAQNRTPLVKTKPSAHIL*PLLQQL
Trigger: AAGCTGCTGAAGGAGGGGTCACAGAATGTGTGCAGA...TGGTTTGGTTTTTACTAGAGGAGTTCTATTCTGAGCTTCTTCTCTCACATATCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp CAAAGCAAACAGAAAGCACTTAGCTGCCTTGTTAGATTTCTGAGTGCCACCATCTTCCGATTTGGATTCTaGTGGGGAAGTGAAGGAGAA +
Preference number: 4 (lower is better)
Translates to: QSKQKALSCLVRFLSATIFRFGF*WGSEGE
Trigger: TTCTCCTTCACTTCCCCATCAGAATCCAAATCGGAA...GATGGTGGCACTCAGAAATCTAACAAGGCAGCTAAGTGCTTTCTGTTTGCTTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp GTTAATAAACACCGCATTCAGTACATATTGGGCAGGAAATGCAAAGCAAACAGACTAGTTCCGACAGAGTaGAGAGGGAGAGGGTGGAAA +
Preference number: 4 (lower is better)
Translates to: VNKHRIQYILGRKCKANRLVPTE*RGRGWK
Trigger: TTTCCACCCTCTCCCTCTTCACTCTGTCGGAACTAG...TCTGTTTGCTTTGCATTTCCTGCCCAATATGTACTGAATGCGGTGTTTATTAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp TTCGGCAAGTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCACTAGTTCCGACAGAGTaGAGAGGGAGAGGGTGGAAA +
Preference number: 4 (lower is better)
Translates to: FGKSFQMLINTAFSTYWALVPTE*RGRGWK
Trigger: TTTCCACCCTCTCCCTCTTCACTCTGTCGGAACTAG...TGCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGACTTGCCGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp GGCAAGTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCAGGACCCACCAGGGTGACCTaGTCACTATTCATCTTGAAG +
Preference number: 4 (lower is better)
Translates to: GKSFQMLINTAFSTYWAGPTRVT*SLFILK
Trigger: CTTCAAGATGAATAGTGAGCAGGTCACCCTGGTGGG...TCCTGCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGACTTGCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075540.8
CDS-3UTR GCA 90 bp TTTCGGCAAGTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCGTCTCAGGAAGGGACTaGAGAATTGCCAAGGCTGAC +
Preference number: 4 (lower is better)
Translates to: FRQVIPNVNKHRIQYILGVSGRD*RIAKAD
Trigger: GTCAGCCTTGGCAATTCTGCAGTCCCTTCCTGAGAC...GCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGACTTGCCGAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp GGAGAGCCATGGGATGCAGGTTATGCGGTGCCTTCACATCTAAGCTTTTATACTTCCACCATGAACACATaGTTGCATTTGTTACACATG +
Preference number: 4 (lower is better)
Translates to: GEPWDAGYAVPSHLSFYTSTMNT*LHLLHM
Trigger: CATGTGTAACAAATGCAAGCATGTGTTCATGGTGGA...AGTATAAAAGCTTAGATGTGAAGGCACCGCATAACCTGCATCCCATGGCTCTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
CDS-3UTR GCA 90 bp AGTCCCTCTGACTATGGTGTATGCTTCCTTACATCTAAAACTGGGAAACCACGAATTGTGATTTCCCTGTaGCAGGATCCCCAACCAATA +
Preference number: 4 (lower is better)
Translates to: SPSDYGVCFLTSKTGKPRIVISL*QDPQPI
Trigger: TATTGGTTGGGGATCCTGGCACAGGGAAATCACAAT...TCGTGGTTTCCCAGTTTTAGATGTAAGGAAGCATACACCATAGTCAGAGGGACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218549.3
CDS-3UTR GCA 90 bp CGCTACATATACATTCTTCTTCTGAGCCATATCCCAACCCAACGTTCTTGGTTTTGTCACGGTCAGACCTaGACTAGTAGATCCAATTCC +
Preference number: 4 (lower is better)
Translates to: RYIYILLLSHIPTQRSWFCHGQT*TSRSNS
Trigger: GGAATTGGATCTACTAGTGCAGGTCTGACCGTGACA...AAACCAAGAACGTTGGGTTGGGATATGGCTCAGAAGAAGAATGTATATGTAGCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp CGCTACATATACATTCTTCTTCTGAGCCATATCCCAACCCAACGTTCTTGGTTTAACCACTGCCTGACTTaGCTTTGTACGCTTAACACC +
Preference number: 4 (lower is better)
Translates to: RYIYILLLSHIPTQRSWFNHCLT*LCTLNT
Trigger: GGTGTTAAGCGTACAAAGGCAAGTCAGGCAGTGGTT...AAACCAAGAACGTTGGGTTGGGATATGGCTCAGAAGAAGAATGTATATGTAGCG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp CAAAGCAAACAGAAAGCACTTAGCTGCCTTGTTAGATTTCTGAGTGCCACCATCTTCAGATACAACCACTaGCTGACTTGCCTTTGTACG +
Preference number: 4 (lower is better)
Translates to: QSKQKALSCLVRFLSATIFRYNH*LTCLCT
Trigger: CGTACAAAGGCAAGTCAGGCAGTGGTTGTATCTGAA...GATGGTGGCACTCAGAAATCTAACAAGGCAGCTAAGTGCTTTCTGTTTGCTTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp CGCTACATATACATTCTTCTTCTGAGCCATATCCCAACCCAACGTTCTTGGTTTTGCCAGCATGAACCTTaGTGCTTTTATTACCGCAGG +
Preference number: 4 (lower is better)
Translates to: RYIYILLLSHIPTQRSWFCQHEP*CFYYRR
Trigger: CCTGCGGTAATAAAAGCAGCAAGGTTCATGCTGGCA...AAACCAAGAACGTTGGGTTGGGATATGGCTCAGAAGAAGAATGTATATGTAGCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp TTTCGGCAAGTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCAGTGAAGGAGAAGCTTaGCAGTCTGGCTATGGTGCC +
Preference number: 4 (lower is better)
Translates to: FRQVIPNVNKHRIQYILGSEGEA*QSGYGA
Trigger: GGCACCATAGCCAGACTGGCAAGCTTCTCCTTCACT...GCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGACTTGCCGAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp TCACACCAACCGCAATTAATTATTCAGCATTTAGGTGATGAAGATGAACCTGACAGTGAAGGAGAAGCTTaGCAGTCTGGCTATGGTGCC +
Preference number: 4 (lower is better)
Translates to: SHQPQLIIQHLGDEDEPDSEGEA*QSGYGA
Trigger: GGCACCATAGCCAGACTGGCAAGCTTCTCCTTCACT...GTCAGGTTCATCTTCATCACCTAAATGCTGAATAATTAATTGCGGTTGGTGTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp GTTAATAAACACCGCATTCAGTACATATTGGGCAGGAAATGCAAAGCAAACAGAAGTGAAGGAGAAGCTTaGCAGTCTGGCTATGGTGCC +
Preference number: 4 (lower is better)
Translates to: VNKHRIQYILGRKCKANRSEGEA*QSGYGA
Trigger: GGCACCATAGCCAGACTGGCAAGCTTCTCCTTCACT...TCTGTTTGCTTTGCATTTCCTGCCCAATATGTACTGAATGCGGTGTTTATTAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp CAGGGTTTTTCTAGGCCACCCCAGTGCATCTTACCACAACTTGTGTTACACCAGATTGAAGCACAGATTTaGAACTGTCAACTAGGTCAT +
Preference number: 4 (lower is better)
Translates to: QGFSRPPQCILPQLVLHQIEAQI*NCQLGH
Trigger: ATGACCTAGTTGACAGTTGCAAATCTGTGCTTCAAT...CTGGTGTAACACAAGTTGTGGTAAGATGCACTGGGGTGGCCTAGAAAAACCCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000218549.3
CDS-3UTR CCA 90 bp GTTAATAAACACCGCATTCAGTACATATTGGGCAGGAAATGCAAAGCAAACAGACACCAGCCAGTACCATaGCCACAGCAAGCTTCACTA +
Preference number: 4 (lower is better)
Translates to: VNKHRIQYILGRKCKANRHQPVP*PQQASL
Trigger: TAGTGAAGCTTGCTGTGGCCATGGTACTGGCTGGTG...TCTGTTTGCTTTGCATTTCCTGCCCAATATGTACTGAATGCGGTGTTTATTAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp GTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCAGGAAATGCAGTTCACACTGCCTCTaGTACTGTGCACGGGGGTTT +
Preference number: 4 (lower is better)
Translates to: VIPNVNKHRIQYILGRKCSSHCL*YCARGF
Trigger: AAACCCCCGTGCACAGTACCAGAGGCAGTGTGAACT...GCATTTCCTGCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp TTCGGCAAGTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCAAGTTCACACTGCCTCTaGTACTGTGCACGGGGGTTT +
Preference number: 4 (lower is better)
Translates to: FGKSFQMLINTAFSTYWASSHCL*YCARGF
Trigger: AAACCCCCGTGCACAGTACCAGAGGCAGTGTGAACT...TGCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGACTTGCCGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp GTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCAGGAAATGCTCCTGCAAGAGGCCCTaGAGTTCCAGCTTTTCCAGA +
Preference number: 4 (lower is better)
Translates to: VIPNVNKHRIQYILGRKCSCKRP*SSSFSR
Trigger: TCTGGAAAAGCTGGAACTCCAGGGCCTCTTGCAGGA...GCATTTCCTGCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp GTTAATAAACACCGCATTCAGTACATATTGGGCAGGAAATGCAAAGCAAACAGATCCTGCAAGAGGCCCTaGAGTTCCAGCTTTTCCAGA +
Preference number: 4 (lower is better)
Translates to: VNKHRIQYILGRKCKANRSCKRP*SSSFSR
Trigger: TCTGGAAAAGCTGGAACTCCAGGGCCTCTTGCAGGA...TCTGTTTGCTTTGCATTTCCTGCCCAATATGTACTGAATGCGGTGTTTATTAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp TTCGGCAAGTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCATCCTGCAAGAGGCCCTaGAGTTCCAGCTTTTCCAGA +
Preference number: 4 (lower is better)
Translates to: FGKSFQMLINTAFSTYWASCKRP*SSSFSR
Trigger: TCTGGAAAAGCTGGAACTCCAGGGCCTCTTGCAGGA...TGCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGACTTGCCGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp ATTTCTGAGTGCCACCATCCTGCCATTTGGTCTGGATATGTGAGAGAAGAAGCTTCTAGTGAATGTGACTaGCATTGGTGTACACTCTCA +
Preference number: 4 (lower is better)
Translates to: ISECHHPAIWSGYVREEASSECD*HWCTLS
Trigger: TGAGAGTGTACACCAATGCCAGTCACATTCACTAGA...AGCTTCTTCTCTCACATATCCAGACCAAATGGCAGGATGGTGGCACTCAGAAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp CTTCTTCTGAGCCATATCCCAACCCAACGTTCTTGGTTTTATAAAAAGACAAACGCCTTGGCTTGTCCCTaGGATCATTTCTGCAGGAAC +
Preference number: 4 (lower is better)
Translates to: LLLSHIPTQRSWFYKKTNALACP*DHFCRN
Trigger: GTTCCTGCAGAAATGATCCCAGGGACAAGCCAAGGC...GTTTGTCTTTTTATAAAACCAAGAACGTTGGGTTGGGATATGGCTCAGAAGAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp TTTCGGCAAGTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCTGGCCTTCGGGGGAGTaGGTCAGTTTTGTCTTCTGT +
Preference number: 4 (lower is better)
Translates to: FRQVIPNVNKHRIQYILGWPSGE*VSFVFC
Trigger: ACAGAAGACAAAACTGACCCACTCCCCCGAAGGCCA...GCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGACTTGCCGAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp TTCGGCAAGTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCAGTCTTTCCGTGCAGCTaGTCAGAGCATCTGTCTCCT +
Preference number: 4 (lower is better)
Translates to: FGKSFQMLINTAFSTYWAVFPCS*SEHLSP
Trigger: AGGAGACAGATGCTCTGACCAGCTGCACGGAAAGAC...TGCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGACTTGCCGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp GTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCAGGAAATGCCCTCTCCTCTCTTGGTaGATTACTGTCTGGTGGCTG +
Preference number: 4 (lower is better)
Translates to: VIPNVNKHRIQYILGRKCPLLSW*ITVWWL
Trigger: CAGCCACCAGACAGTAATCCACCAAGAGAGGAGAGG...GCATTTCCTGCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp TTCGGCAAGTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCACCTCTCCTCTCTTGGTaGATTACTGTCTGGTGGCTG +
Preference number: 4 (lower is better)
Translates to: FGKSFQMLINTAFSTYWAPLLSW*ITVWWL
Trigger: CAGCCACCAGACAGTAATCCACCAAGAGAGGAGAGG...TGCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGACTTGCCGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp CTTCTTCTGAGCCATATCCCAACCCAACGTTCTTGGTTTTATAAAAAGACAAACTTGCCAGTCTGGCTATaGTGCCAGCATGAACCTTGC +
Preference number: 4 (lower is better)
Translates to: LLLSHIPTQRSWFYKKTNLPVWL*CQHEPC
Trigger: GCAAGGTTCATGCTGGCACCATAGCCAGACTGGCAA...GTTTGTCTTTTTATAAAACCAAGAACGTTGGGTTGGGATATGGCTCAGAAGAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp CAAAGCAAACAGAAAGCACTTAGCTGCCTTGTTAGATTTCTGAGTGCCACCATCACAAACAGGCAAACCTaGTATCCTGGCATGAAGATT +
Preference number: 4 (lower is better)
Translates to: QSKQKALSCLVRFLSATITNRQT*YPGMKI
Trigger: AATCTTCATGCCAGGATATCAGGTTTGCCTGTTTGT...GATGGTGGCACTCAGAAATCTAACAAGGCAGCTAAGTGCTTTCTGTTTGCTTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp TGCCAAGCCTACTATTTCATTCAATTCAATACCCAGGACTCACATGGTAGAAACCCAACCAATAAAAGGTaGGATTCCCCTCTAACCCTG +
Preference number: 4 (lower is better)
Translates to: CQAYYFIQFNTQDSHGRNPTNKR*DSPLTL
Trigger: CAGGGTTAGAGGGGAATCTCACCTTTTATTGGTTGG...GTTTCTACCATGTGAGTCCTGGGTATTGAATTGAATGAAATAGTAGGCTTGGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
CDS-3UTR TCA 90 bp GTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCAGGAAATGCAGCACCTCCCTGCATTaGAGACTCCATCACAGATAC +
Preference number: 4 (lower is better)
Translates to: VIPNVNKHRIQYILGRKCSTSLH*RLHHRY
Trigger: GTATCTGTGATGGAGTCTTCAATGCAGGGAGGTGCT...GCATTTCCTGCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp GTTAATAAACACCGCATTCAGTACATATTGGGCAGGAAATGCAAAGCAAACAGAAGCACCTCCCTGCATTaGAGACTCCATCACAGATAC +
Preference number: 4 (lower is better)
Translates to: VNKHRIQYILGRKCKANRSTSLH*RLHHRY
Trigger: GTATCTGTGATGGAGTCTTCAATGCAGGGAGGTGCT...TCTGTTTGCTTTGCATTTCCTGCCCAATATGTACTGAATGCGGTGTTTATTAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp GTTAATAAACACCGCATTCAGTACATATTGGGCAGGAAATGCAAAGCAAACAGACCAGCTTTTCCAGAATaGGTTCACACTGCCTCTGGT +
Preference number: 4 (lower is better)
Translates to: VNKHRIQYILGRKCKANRPAFPE*VHTASG
Trigger: ACCAGAGGCAGTGTGAACTCATTCTGGAAAAGCTGG...TCTGTTTGCTTTGCATTTCCTGCCCAATATGTACTGAATGCGGTGTTTATTAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp TTTCGGCAAGTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCCCAGCTTTTCCAGAATaGGTTCACACTGCCTCTGGT +
Preference number: 4 (lower is better)
Translates to: FRQVIPNVNKHRIQYILGPAFPE*VHTASG
Trigger: ACCAGAGGCAGTGTGAACTCATTCTGGAAAAGCTGG...GCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGACTTGCCGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp CACCATCCTGCCATTTGGTCTGGATATGTGAGAGAAGAAGCTCAGAATAGAACTTGCTTCTCCTTGCCCTaGGATTTATTGTTGGAGATT +
Preference number: 4 (lower is better)
Translates to: HHPAIWSGYVREEAQNRTCFSLP*DLLLEI
Trigger: AATCTCCAACAATAAATCTCAGGGCAAGGAGAAGCA...AGTTCTATTCTGAGCTTCTTCTCTCACATATCCAGACCAAATGGCAGGATGGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp CGCTACATATACATTCTTCTTCTGAGCCATATCCCAACCCAACGTTCTTGGTTTTTCCGATTTGGATTCTaGTGGGGAAGTGAAGGAGAA +
Preference number: 4 (lower is better)
Translates to: RYIYILLLSHIPTQRSWFFRFGF*WGSEGE
Trigger: TTCTCCTTCACTTCCCCATCAGAATCCAAATCGGAA...AAACCAAGAACGTTGGGTTGGGATATGGCTCAGAAGAAGAATGTATATGTAGCG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp ATGGTTCAGATCTGCTCTTTCTTTCAGTTTACAGAAATGCCGAACTTACAAGGGGAAGATCATGCACAGTaGGATGGCATTGAAGCACAG +
Preference number: 4 (lower is better)
Translates to: MVQICSFFQFTEMPNLQGEDHAQ*DGIEAQ
Trigger: CTGTGCTTCAATGCCATCTCACTGTGCATGATCTTC...CCCTTGTAAGTTCGGCATTTCTGTAAACTGAAAGAAAGAGCAGATCTGAACCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218549.3
CDS-3UTR GCA 90 bp ACTCACATGGTAGAAACTAATTCTCCCACAAGCTGTCATCTAACTTGCATATATGTCTCAGGAAGGGACTaGAGAATTGCCAAGGCTGAC +
Preference number: 4 (lower is better)
Translates to: THMVETNSPTSCHLTCIYVSGRD*RIAKAD
Trigger: GTCAGCCTTGGCAATTCTGCAGTCCCTTCCTGAGAC...ATATATGCAAGTTAGATGACAGCTTGTGGGAGAATTAGTTTCTACCATGTGAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
CDS-3UTR GCA 90 bp AAAGCACTTAGCTGCCTTGTTAGATTTCTGAGTGCCACCATCCTGCCATTTGGTTCCACCATGAACACATaGTTGCATTTGTTACACATG +
Preference number: 4 (lower is better)
Translates to: KALSCLVRFLSATILPFGSTMNT*LHLLHM
Trigger: CATGTGTAACAAATGCAAGCATGTGTTCATGGTGGA...ACCAAATGGCAGGATGGTGGCACTCAGAAATCTAACAAGGCAGCTAAGTGCTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp GGCAAGTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCAGGAATACTGCTCGAAGTCTaGCTCCACCATGAACACATG +
Preference number: 4 (lower is better)
Translates to: GKSFQMLINTAFSTYWAGILLEV*LHHEHM
Trigger: CATGTGTTCATGGTGGAGGCAGACTTCGAGCAGTAT...TCCTGCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGACTTGCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp AAGCATGCATACAGTTGTTCATTCACAACCTGGTCTGACCCTTCATTTCTGTTAATACTGCTCGAAGTCTaGCTCCACCATGAACACATG +
Preference number: 4 (lower is better)
Translates to: KHAYSCSFTTWSDPSFLLILLEV*LHHEHM
Trigger: CATGTGTTCATGGTGGAGGCAGACTTCGAGCAGTAT...TAACAGAAATGAAGGGTCAGACCAGGTTGTGAATGAACAACTGTATGCATGCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
CDS-3UTR GCA 90 bp GGCAAGTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCAGGAGAAGGAGGACTTGATTaGTCACTTCAGACAGTGTGG +
Preference number: 4 (lower is better)
Translates to: GKSFQMLINTAFSTYWAGEGGLD*SLQTVW
Trigger: CCACACTGTCTGAAGTGAGCAATCAAGTCCTCCTTC...TCCTGCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGACTTGCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp CTTCTTCTGAGCCATATCCCAACCCAACGTTCTTGGTTTTATAAAAAGACAAACAGAATGAGTTCACACTaGCTCTGGTACTGTGCACGG +
Preference number: 4 (lower is better)
Translates to: LLLSHIPTQRSWFYKKTNRMSSH*LWYCAR
Trigger: CCGTGCACAGTACCAGAGGCAGTGTGAACTCATTCT...GTTTGTCTTTTTATAAAACCAAGAACGTTGGGTTGGGATATGGCTCAGAAGAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp CAAAGCAAACAGAAAGCACTTAGCTGCCTTGTTAGATTTCTGAGTGCCACCATCAATAATTTGCTTCTTTaGTGTGGCCCATGCTTCTCC +
Preference number: 4 (lower is better)
Translates to: QSKQKALSCLVRFLSATINNLLL*CGPCFS
Trigger: GGAGAAGCATGGGCCACAGCAAAGAAGCAAATTATT...GATGGTGGCACTCAGAAATCTAACAAGGCAGCTAAGTGCTTTCTGTTTGCTTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp GGCAAGTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCAGGAAACCACTGCCTGACTTaGCTTTGTACGCTTAACACC +
Preference number: 4 (lower is better)
Translates to: GKSFQMLINTAFSTYWAGNHCLT*LCTLNT
Trigger: GGTGTTAAGCGTACAAAGGCAAGTCAGGCAGTGGTT...TCCTGCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGACTTGCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp CTTCTTCTGAGCCATATCCCAACCCAACGTTCTTGGTTTTATAAAAAGACAAACCTCTGGTTGTGCTTCTaGACACATTCTGTGACCCCT +
Preference number: 4 (lower is better)
Translates to: LLLSHIPTQRSWFYKKTNLWLCF*THSVTP
Trigger: AGGGGTCACAGAATGTGTGCAGAAGCACAACCAGAG...GTTTGTCTTTTTATAAAACCAAGAACGTTGGGTTGGGATATGGCTCAGAAGAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp TTCGGCAAGTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCACTCTGGTTGTGCTTCTaGACACATTCTGTGACCCCT +
Preference number: 4 (lower is better)
Translates to: FGKSFQMLINTAFSTYWALWLCF*THSVTP
Trigger: AGGGGTCACAGAATGTGTGCAGAAGCACAACCAGAG...TGCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGACTTGCCGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp AGGGTTTTTCTAGGCCACCCCAGTGCATCTTACCACAACTTGTGTTACACCAGACTTTTCAAAACAGTCTaGACTAGTAGATCCAATTCC +
Preference number: 4 (lower is better)
Translates to: RVFLGHPSASYHNLCYTRLFKTV*TSRSNS
Trigger: GGAATTGGATCTACTAGTGCAGACTGTTTTGAAAAG...TCTGGTGTAACACAAGTTGTGGTAAGATGCACTGGGGTGGCCTAGAAAAACCCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000218549.3
CDS-3UTR CCA 90 bp TCACACCAACCGCAATTAATTATTCAGCATTTAGGTGATGAAGATGAACCTGACATTCATCTTGAAGGGTaGGTAGGGCTCAACACGCAC +
Preference number: 4 (lower is better)
Translates to: SHQPQLIIQHLGDEDEPDIHLEG*VGLNTH
Trigger: GTGCGTGTTGAGCCCTACCCACCCTTCAAGATGAAT...GTCAGGTTCATCTTCATCACCTAAATGCTGAATAATTAATTGCGGTTGGTGTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075540.8
CDS-3UTR CCA 90 bp GAAGTCCCTCTGACTATGGTGTATGCTTCCTTACATCTAAAACTGGGAAACCACGCAAACCTGATATCCTaGCATGAAGATTCTGCTTCA +
Preference number: 4 (lower is better)
Translates to: EVPLTMVYASLHLKLGNHANLIS*HEDSAS
Trigger: TGAAGCAGAATCTTCATGCCAGGATATCAGGTTTGC...GTGGTTTCCCAGTTTTAGATGTAAGGAAGCATACACCATAGTCAGAGGGACTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218549.3
CDS-3UTR CCA 90 bp AAGCATGCATACAGTTGTTCATTCACAACCTGGTCTGACCCTTCATTTCTGTTAAGTGTCCCACATCCTTaGTTTTGGGAATGTGTTCCC +
Preference number: 4 (lower is better)
Translates to: KHAYSCSFTTWSDPSFLLSVPHP*FWECVP
Trigger: GGGAACACATTCCCAAAACCAAGGATGTGGGACACT...TAACAGAAATGAAGGGTCAGACCAGGTTGTGAATGAACAACTGTATGCATGCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
CDS-3UTR CCA 90 bp TGCCAAGCCTACTATTTCATTCAATTCAATACCCAGGACTCACATGGTAGAAACGGTAATCCCGACATCTaGCTGGAGATGAAGACAAGT +
Preference number: 4 (lower is better)
Translates to: CQAYYFIQFNTQDSHGRNGNPDI*LEMKTS
Trigger: ACTTGTCTTCATCTCCAGCCAGATGTCGGGATTACC...GTTTCTACCATGTGAGTCCTGGGTATTGAATTGAATGAAATAGTAGGCTTGGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
CDS-3UTR CCA 90 bp GTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCAGGAAATGCTTGCTGCCAGGATGGTaGTCCTTGTGTTCAGCTTAC +
Preference number: 4 (lower is better)
Translates to: VIPNVNKHRIQYILGRKCLLPGW*SLCSAY
Trigger: GTAAGCTGAACACAAGGACCACCATCCTGGCAGCAA...GCATTTCCTGCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp TTTAGTCATCTCTGCCCACCAGACAGGGAAACTTCTCCGTTTTATTTTATTATTCAGACACAGACTCCTTaGGGTCATACTGGCCTTTGG +
Preference number: 4 (lower is better)
Translates to: FSHLCPPDRETSPFYFIIQTQTP*GHTGLW
Trigger: CCAAAGGCCAGTATGACCCCAAGGAGTCTGTGTCTG...AATAATAAAATAAAACGGAGAAGTTTCCCTGTCTGGTGGGCAGAGATGACTAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp GTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCAGGAAATGCTCAGGGAAGGAAGTGTaGAGAGCATTCACACCTCCT +
Preference number: 4 (lower is better)
Translates to: VIPNVNKHRIQYILGRKCSGKEV*RAFTPP
Trigger: AGGAGGTGTGAATGCTCTCCACACTTCCTTCCCTGA...GCATTTCCTGCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp AAAGCACTTAGCTGCCTTGTTAGATTTCTGAGTGCCACCATCCTGCCATTTGGTTCCGTCTCTTTCTTTTaGGTGTTCCTGATCTTTTTC +
Preference number: 4 (lower is better)
Translates to: KALSCLVRFLSATILPFGSVSFF*VFLIFF
Trigger: GAAAAAGATCAGGAACACCCAAAAGAAAGAGACGGA...ACCAAATGGCAGGATGGTGGCACTCAGAAATCTAACAAGGCAGCTAAGTGCTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp ACTCACATGGTAGAAACTAATTCTCCCACAAGCTGTCATCTAACTTGCATATATTGGGAATGTGTTCCCTaGCCAGTTCTGGACAAACAG +
Preference number: 4 (lower is better)
Translates to: THMVETNSPTSCHLTCIYWECVP*PVLDKQ
Trigger: CTGTTTGTCCAGAACTGGTCAGGGAACACATTCCCA...ATATATGCAAGTTAGATGACAGCTTGTGGGAGAATTAGTTTCTACCATGTGAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
CDS-3UTR TCA 90 bp TCACACCAACCGCAATTAATTATTCAGCATTTAGGTGATGAAGATGAACCTGACCCTGCTCCTGAATTTTaGTTTCCTGGTAATCCCGAC +
Preference number: 4 (lower is better)
Translates to: SHQPQLIIQHLGDEDEPDPAPEF*FPGNPD
Trigger: GTCGGGATTACCAGGAAATCAAAATTCAGGAGCAGG...GTCAGGTTCATCTTCATCACCTAAATGCTGAATAATTAATTGCGGTTGGTGTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp GTTAATAAACACCGCATTCAGTACATATTGGGCAGGAAATGCAAAGCAAACAGACCAACCAATAAAAGGTaGGATTCCCCTCTAACCCTG +
Preference number: 4 (lower is better)
Translates to: VNKHRIQYILGRKCKANRPTNKR*DSPLTL
Trigger: CAGGGTTAGAGGGGAATCTCACCTTTTATTGGTTGG...TCTGTTTGCTTTGCATTTCCTGCCCAATATGTACTGAATGCGGTGTTTATTAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp AGTCCCTCTGACTATGGTGTATGCTTCCTTACATCTAAAACTGGGAAACCACGAATATTTAAGGAATTGTaGTTTCCCTGTGCCAGGATC +
Preference number: 4 (lower is better)
Translates to: SPSDYGVCFLTSKTGKPRIFKEL*FPCARI
Trigger: GATCCTGGCACAGGGAAATCACAATTCCTTAAATAT...TCGTGGTTTCCCAGTTTTAGATGTAAGGAAGCATACACCATAGTCAGAGGGACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218549.3
CDS-3UTR TCA 90 bp ACCTGGTCTGACCCTTCATTTCTGTTACTGCTTTACCAAGAAAGTCTATGCGGAATATTTAAGGAATTGTaGTTTCCCTGTGCCAGGATC +
Preference number: 4 (lower is better)
Translates to: TWSDPSFLLLLYQESLCGIFKEL*FPCARI
Trigger: GATCCTGGCACAGGGAAATCACAATTCCTTAAATAT...TCCGCATAGACTTTCTTGGTAAAGCAGTAACAGAAATGAAGGGTCAGACCAGGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
CDS-3UTR TCA 90 bp TCACACCAACCGCAATTAATTATTCAGCATTTAGGTGATGAAGATGAACCTGACGGTGGAGATTCCGAATaGGGCAGAAGTAGGTTTTCA +
Preference number: 4 (lower is better)
Translates to: SHQPQLIIQHLGDEDEPDGGDSE*GRSRFS
Trigger: TGAAAACCTACTTCTGCCTCATTCGGAATCTCCACC...GTCAGGTTCATCTTCATCACCTAAATGCTGAATAATTAATTGCGGTTGGTGTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp TTCGGCAAGTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCATGTCACGGTCAGACCTaGACTAGTAGATCCAATTCC +
Preference number: 4 (lower is better)
Translates to: FGKSFQMLINTAFSTYWACHGQT*TSRSNS
Trigger: GGAATTGGATCTACTAGTGCAGGTCTGACCGTGACA...TGCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGACTTGCCGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp AAAGCACTTAGCTGCCTTGTTAGATTTCTGAGTGCCACCATCCTGCCATTTGGTTTTTCATCTTCTCCATaGTCCACAGATTCTCTGATT +
Preference number: 4 (lower is better)
Translates to: KALSCLVRFLSATILPFGFSSSP*STDSLI
Trigger: AATCAGAGAATCTGTGGAGCATGGAGAAGATGAAAA...ACCAAATGGCAGGATGGTGGCACTCAGAAATCTAACAAGGCAGCTAAGTGCTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp CAAAGCAAACAGAAAGCACTTAGCTGCCTTGTTAGATTTCTGAGTGCCACCATCCAGCTTCTAATAATTTaGTTCTTTGCTGTGGCCCAT +
Preference number: 4 (lower is better)
Translates to: QSKQKALSCLVRFLSATIQLLII*FFAVAH
Trigger: ATGGGCCACAGCAAAGAAGCAAATTATTAGAAGCTG...GATGGTGGCACTCAGAAATCTAACAAGGCAGCTAAGTGCTTTCTGTTTGCTTTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp CGCTACATATACATTCTTCTTCTGAGCCATATCCCAACCCAACGTTCTTGGTTTCAGCATGAACCTTGCTaGTTTTATTACCGCAGGAAA +
Preference number: 4 (lower is better)
Translates to: RYIYILLLSHIPTQRSWFQHEPC*FYYRRK
Trigger: TTTCCTGCGGTAATAAAAGCAGCAAGGTTCATGCTG...AAACCAAGAACGTTGGGTTGGGATATGGCTCAGAAGAAGAATGTATATGTAGCG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp GGATATGTGAGAGAAGAAGCTCAGAATAGAACTCCTCTAGTAAAAACCAAACCAAGTGTCCCACATCCTTaGTTTTGGGAATGTGTTCCC +
Preference number: 4 (lower is better)
Translates to: GYVREEAQNRTPLVKTKPSVPHP*FWECVP
Trigger: GGGAACACATTCCCAAAACCAAGGATGTGGGACACT...TGGTTTGGTTTTTACTAGAGGAGTTCTATTCTGAGCTTCTTCTCTCACATATCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp CTCTGGCTCTCATTAACGTGTAAGATCAGGGTATTTTCTGTAGTTGACATAATCGGTAATCCCGACATCTaGCTGGAGATGAAGACAAGT +
Preference number: 4 (lower is better)
Translates to: LWLSLTCKIRVFSVVDIIGNPDI*LEMKTS
Trigger: ACTTGTCTTCATCTCCAGCCAGATGTCGGGATTACC...GATTATGTCAACTACAGAAAATACCCTGATCTTACACGTTAATGAGAGCCAGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218549.3
CDS-3UTR CCA 90 bp GGTTCAGATCTGCTCTTTCTTTCAGTTTACAGAAATGCCGAACTTACAAGGGTAGGTCAAAACGGACCTTaGGGTAATCTTTGCTGCATA +
Preference number: 4 (lower is better)
Translates to: GSDLLFLSVYRNAELTRVGQNGP*GNLCCI
Trigger: TATGCAGCAAAGATTACCCCAAGGTCCGTTTTGACC...TACCCTTGTAAGTTCGGCATTTCTGTAAACTGAAAGAAAGAGCAGATCTGAACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218549.3
CDS-3UTR CCA 90 bp CAAAGCAAACAGAAAGCACTTAGCTGCCTTGTTAGATTTCTGAGTGCCACCATCTCCGTCTCTTTCTTTTaGGTGTTCCTGATCTTTTTC +
Preference number: 4 (lower is better)
Translates to: QSKQKALSCLVRFLSATISVSFF*VFLIFF
Trigger: GAAAAAGATCAGGAACACCCAAAAGAAAGAGACGGA...GATGGTGGCACTCAGAAATCTAACAAGGCAGCTAAGTGCTTTCTGTTTGCTTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp GTTAATAAACACCGCATTCAGTACATATTGGGCAGGAAATGCAAAGCAAACAGATATCGAAGGAGGACTTaGTTGCTCACTTCAGACAGT +
Preference number: 4 (lower is better)
Translates to: VNKHRIQYILGRKCKANRYRRRT*LLTSDS
Trigger: ACTGTCTGAAGTGAGCAATCAAGTCCTCCTTCGATA...TCTGTTTGCTTTGCATTTCCTGCCCAATATGTACTGAATGCGGTGTTTATTAAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp GTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCAGGAAATGCGCTATGGTGCCAGCATaGACCTTGCTGCTTTTATTA +
Preference number: 4 (lower is better)
Translates to: VIPNVNKHRIQYILGRKCAMVPA*TLLLLL
Trigger: TAATAAAAGCAGCAAGGTTCATGCTGGCACCATAGC...GCATTTCCTGCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp TTCGGCAAGTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCATTCCGATTTGGATTCTaGTGGGGAAGTGAAGGAGAA +
Preference number: 4 (lower is better)
Translates to: FGKSFQMLINTAFSTYWAFRFGF*WGSEGE
Trigger: TTCTCCTTCACTTCCCCATCAGAATCCAAATCGGAA...TGCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGACTTGCCGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp GGCAAGTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCAGGATCTAACCCTGGTTCCTaGAGCATCAGTTCTTTGAAT +
Preference number: 4 (lower is better)
Translates to: GKSFQMLINTAFSTYWAGSNPGS*SISSLN
Trigger: ATTCAAAGAACTGATGCTGCAGGAACCAGGGTTAGA...TCCTGCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGACTTGCC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp ATGGTTCAGATCTGCTCTTTCTTTCAGTTTACAGAAATGCCGAACTTACAAGGGTCTAACCCTGGTTCCTaGAGCATCAGTTCTTTGAAT +
Preference number: 4 (lower is better)
Translates to: MVQICSFFQFTEMPNLQGSNPGS*SISSLN
Trigger: ATTCAAAGAACTGATGCTGCAGGAACCAGGGTTAGA...CCCTTGTAAGTTCGGCATTTCTGTAAACTGAAAGAAAGAGCAGATCTGAACCAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218549.3
CDS-3UTR GCA 90 bp TGCCAAGCCTACTATTTCATTCAATTCAATACCCAGGACTCACATGGTAGAAACTCTAACCCTGGTTCCTaGAGCATCAGTTCTTTGAAT +
Preference number: 4 (lower is better)
Translates to: CQAYYFIQFNTQDSHGRNSNPGS*SISSLN
Trigger: ATTCAAAGAACTGATGCTGCAGGAACCAGGGTTAGA...GTTTCTACCATGTGAGTCCTGGGTATTGAATTGAATGAAATAGTAGGCTTGGCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
CDS-3UTR GCA 90 bp GAAGTCCCTCTGACTATGGTGTATGCTTCCTTACATCTAAAACTGGGAAACCACCCTTGGGGTAATCTTTaGTGCATATTTAAGGAATTG +
Preference number: 4 (lower is better)
Translates to: EVPLTMVYASLHLKLGNHPWGNL*CIFKEL
Trigger: CAATTCCTTAAATATGCAGCAAAGATTACCCCAAGG...GTGGTTTCCCAGTTTTAGATGTAAGGAAGCATACACCATAGTCAGAGGGACTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218549.3
CDS-3UTR GCA 90 bp GGATATGTGAGAGAAGAAGCTCAGAATAGAACTCCTCTAGTAAAAACCAAACCATTCAGATACAACCACTaGCTGACTTGCCTTTGTACG +
Preference number: 4 (lower is better)
Translates to: GYVREEAQNRTPLVKTKPFRYNH*LTCLCT
Trigger: CGTACAAAGGCAAGTCAGGCAGTGGTTGTATCTGAA...TGGTTTGGTTTTTACTAGAGGAGTTCTATTCTGAGCTTCTTCTCTCACATATCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp GTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCAGGAAATGCTTCAGATACAACCACTaGCTGACTTGCCTTTGTACG +
Preference number: 4 (lower is better)
Translates to: VIPNVNKHRIQYILGRKCFRYNH*LTCLCT
Trigger: CGTACAAAGGCAAGTCAGGCAGTGGTTGTATCTGAA...GCATTTCCTGCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp GTTAATAAACACCGCATTCAGTACATATTGGGCAGGAAATGCAAAGCAAACAGATTCAGATACAACCACTaGCTGACTTGCCTTTGTACG +
Preference number: 4 (lower is better)
Translates to: VNKHRIQYILGRKCKANRFRYNH*LTCLCT
Trigger: CGTACAAAGGCAAGTCAGGCAGTGGTTGTATCTGAA...TCTGTTTGCTTTGCATTTCCTGCCCAATATGTACTGAATGCGGTGTTTATTAAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp GGCAAGTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCAGGATCTAGTGAATGTGACTaGCATTGGTGTACACTCTCA +
Preference number: 4 (lower is better)
Translates to: GKSFQMLINTAFSTYWAGSSECD*HWCTLS
Trigger: TGAGAGTGTACACCAATGCCAGTCACATTCACTAGA...TCCTGCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGACTTGCC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp AAGCATGCATACAGTTGTTCATTCACAACCTGGTCTGACCCTTCATTTCTGTTAGTTCTTATGGTACTCTaGAACATAGGACTCAAACAC +
Preference number: 4 (lower is better)
Translates to: KHAYSCSFTTWSDPSFLLVLMVL*NIGLKH
Trigger: GTGTTTGAGTCCTATGTTTCAGAGTACCATAAGAAC...TAACAGAAATGAAGGGTCAGACCAGGTTGTGAATGAACAACTGTATGCATGCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
CDS-3UTR TCA 90 bp GGCAAGTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCAGGAATATTTAAGGAATTGTaGTTTCCCTGTGCCAGGATC +
Preference number: 4 (lower is better)
Translates to: GKSFQMLINTAFSTYWAGIFKEL*FPCARI
Trigger: GATCCTGGCACAGGGAAATCACAATTCCTTAAATAT...TCCTGCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGACTTGCC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp GTTAATAAACACCGCATTCAGTACATATTGGGCAGGAAATGCAAAGCAAACAGATGCTTCTCCTTGCCCTaGGATTTATTGTTGGAGATT +
Preference number: 4 (lower is better)
Translates to: VNKHRIQYILGRKCKANRCFSLP*DLLLEI
Trigger: AATCTCCAACAATAAATCTCAGGGCAAGGAGAAGCA...TCTGTTTGCTTTGCATTTCCTGCCCAATATGTACTGAATGCGGTGTTTATTAAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp GGTTCAGATCTGCTCTTTCTTTCAGTTTACAGAAATGCCGAACTTACAAGGGTATCCACCATGAACACATaGTTGCATTTGTTACACATG +
Preference number: 4 (lower is better)
Translates to: GSDLLFLSVYRNAELTRVSTMNT*LHLLHM
Trigger: CATGTGTAACAAATGCAAGCATGTGTTCATGGTGGA...TACCCTTGTAAGTTCGGCATTTCTGTAAACTGAAAGAAAGAGCAGATCTGAACC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218549.3
CDS-3UTR GCA 90 bp TCACACCAACCGCAATTAATTATTCAGCATTTAGGTGATGAAGATGAACCTGACTCTAACCCTGGTTCCTaGAGCATCAGTTCTTTGAAT +
Preference number: 4 (lower is better)
Translates to: SHQPQLIIQHLGDEDEPDSNPGS*SISSLN
Trigger: ATTCAAAGAACTGATGCTGCAGGAACCAGGGTTAGA...GTCAGGTTCATCTTCATCACCTAAATGCTGAATAATTAATTGCGGTTGGTGTGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp ACTCACATGGTAGAAACTAATTCTCCCACAAGCTGTCATCTAACTTGCATATATATTGTGATTTCCCTGTaGCAGGATCCCCAACCAATA +
Preference number: 4 (lower is better)
Translates to: THMVETNSPTSCHLTCIYIVISL*QDPQPI
Trigger: TATTGGTTGGGGATCCTGGCACAGGGAAATCACAAT...ATATATGCAAGTTAGATGACAGCTTGTGGGAGAATTAGTTTCTACCATGTGAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
CDS-3UTR GCA 90 bp TTTAGTCATCTCTGCCCACCAGACAGGGAAACTTCTCCGTTTTATTTTATTATTATTGTGATTTCCCTGTaGCAGGATCCCCAACCAATA +
Preference number: 4 (lower is better)
Translates to: FSHLCPPDRETSPFYFIIIVISL*QDPQPI
Trigger: TATTGGTTGGGGATCCTGGCACAGGGAAATCACAAT...AATAATAAAATAAAACGGAGAAGTTTCCCTGTCTGGTGGGCAGAGATGACTAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp TCACACCAACCGCAATTAATTATTCAGCATTTAGGTGATGAAGATGAACCTGACAATAATTTGCTTCTTTaGTGTGGCCCATGCTTCTCC +
Preference number: 4 (lower is better)
Translates to: SHQPQLIIQHLGDEDEPDNNLLL*CGPCFS
Trigger: GGAGAAGCATGGGCCACAGCAAAGAAGCAAATTATT...GTCAGGTTCATCTTCATCACCTAAATGCTGAATAATTAATTGCGGTTGGTGTGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp GTTAATAAACACCGCATTCAGTACATATTGGGCAGGAAATGCAAAGCAAACAGAAATAATTTGCTTCTTTaGTGTGGCCCATGCTTCTCC +
Preference number: 4 (lower is better)
Translates to: VNKHRIQYILGRKCKANRNNLLL*CGPCFS
Trigger: GGAGAAGCATGGGCCACAGCAAAGAAGCAAATTATT...TCTGTTTGCTTTGCATTTCCTGCCCAATATGTACTGAATGCGGTGTTTATTAAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp GGATATGTGAGAGAAGAAGCTCAGAATAGAACTCCTCTAGTAAAAACCAAACCACAGCATGAACCTTGCTaGTTTTATTACCGCAGGAAA +
Preference number: 4 (lower is better)
Translates to: GYVREEAQNRTPLVKTKPQHEPC*FYYRRK
Trigger: TTTCCTGCGGTAATAAAAGCAGCAAGGTTCATGCTG...TGGTTTGGTTTTTACTAGAGGAGTTCTATTCTGAGCTTCTTCTCTCACATATCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp GTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCAGGAAATGCCAGCATGAACCTTGCTaGTTTTATTACCGCAGGAAA +
Preference number: 4 (lower is better)
Translates to: VIPNVNKHRIQYILGRKCQHEPC*FYYRRK
Trigger: TTTCCTGCGGTAATAAAAGCAGCAAGGTTCATGCTG...GCATTTCCTGCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp TCACACCAACCGCAATTAATTATTCAGCATTTAGGTGATGAAGATGAACCTGACGCAAACCTGATATCCTaGCATGAAGATTCTGCTTCA +
Preference number: 4 (lower is better)
Translates to: SHQPQLIIQHLGDEDEPDANLIS*HEDSAS
Trigger: TGAAGCAGAATCTTCATGCCAGGATATCAGGTTTGC...GTCAGGTTCATCTTCATCACCTAAATGCTGAATAATTAATTGCGGTTGGTGTGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR CCA 90 bp TCACACCAACCGCAATTAATTATTCAGCATTTAGGTGATGAAGATGAACCTGACTCTAGTGAATGTGACTaGCATTGGTGTACACTCTCA +
Preference number: 4 (lower is better)
Translates to: SHQPQLIIQHLGDEDEPDSSECD*HWCTLS
Trigger: TGAGAGTGTACACCAATGCCAGTCACATTCACTAGA...GTCAGGTTCATCTTCATCACCTAAATGCTGAATAATTAATTGCGGTTGGTGTGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR TCA 90 bp TTTCGGCAAGTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCATATTTAAGGAATTGTaGTTTCCCTGTGCCAGGATC +
Preference number: 4 (lower is better)
Translates to: FRQVIPNVNKHRIQYILGIFKEL*FPCARI
Trigger: GATCCTGGCACAGGGAAATCACAATTCCTTAAATAT...GCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGACTTGCCGAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp GGATATGTGAGAGAAGAAGCTCAGAATAGAACTCCTCTAGTAAAAACCAAACCATCCACCATGAACACATaGTTGCATTTGTTACACATG +
Preference number: 4 (lower is better)
Translates to: GYVREEAQNRTPLVKTKPSTMNT*LHLLHM
Trigger: CATGTGTAACAAATGCAAGCATGTGTTCATGGTGGA...TGGTTTGGTTTTTACTAGAGGAGTTCTATTCTGAGCTTCTTCTCTCACATATCC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp TTCGGCAAGTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCAACACTTATGGTTTGTTaGTCCATTGCTTCATGGATG +
Preference number: 4 (lower is better)
Translates to: FGKSFQMLINTAFSTYWATLMVC*SIASWM
Trigger: CATCCATGAAGCAATGGAGCAACAAACCATAAGTGT...TGCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGACTTGCCGAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp GGATATGTGAGAGAAGAAGCTCAGAATAGAACTCCTCTAGTAAAAACCAAACCAACACTTATGGTTTGTTaGTCCATTGCTTCATGGATG +
Preference number: 4 (lower is better)
Translates to: GYVREEAQNRTPLVKTKPTLMVC*SIASWM
Trigger: CATCCATGAAGCAATGGAGCAACAAACCATAAGTGT...TGGTTTGGTTTTTACTAGAGGAGTTCTATTCTGAGCTTCTTCTCTCACATATCC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp GTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCAGGAAATGCCAGCTTCTAATAATTTaGTTCTTTGCTGTGGCCCAT +
Preference number: 4 (lower is better)
Translates to: VIPNVNKHRIQYILGRKCQLLII*FFAVAH
Trigger: ATGGGCCACAGCAAAGAAGCAAATTATTAGAAGCTG...GCATTTCCTGCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp GTTAATAAACACCGCATTCAGTACATATTGGGCAGGAAATGCAAAGCAAACAGACAGCTTCTAATAATTTaGTTCTTTGCTGTGGCCCAT +
Preference number: 4 (lower is better)
Translates to: VNKHRIQYILGRKCKANRQLLII*FFAVAH
Trigger: ATGGGCCACAGCAAAGAAGCAAATTATTAGAAGCTG...TCTGTTTGCTTTGCATTTCCTGCCCAATATGTACTGAATGCGGTGTTTATTAAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp CTTCTTCTGAGCCATATCCCAACCCAACGTTCTTGGTTTTATAAAAAGACAAACTTTAGAACTGTCAACTaGTATTTCACTAGCACTGGG +
Preference number: 4 (lower is better)
Translates to: LLLSHIPTQRSWFYKKTNFRTVN*YFTSTG
Trigger: CCCAGTGCTAGTGAAATAGCAGTTGACAGTTCTAAA...GTTTGTCTTTTTATAAAACCAAGAACGTTGGGTTGGGATATGGCTCAGAAGAAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp CTTCTTCTGAGCCATATCCCAACCCAACGTTCTTGGTTTTATAAAAAGACAAACCCTTGGGGTAATCTTTaGTGCATATTTAAGGAATTG +
Preference number: 4 (lower is better)
Translates to: LLLSHIPTQRSWFYKKTNPWGNL*CIFKEL
Trigger: CAATTCCTTAAATATGCAGCAAAGATTACCCCAAGG...GTTTGTCTTTTTATAAAACCAAGAACGTTGGGTTGGGATATGGCTCAGAAGAAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp TTTCGGCAAGTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCCCTTGGGGTAATCTTTaGTGCATATTTAAGGAATTG +
Preference number: 4 (lower is better)
Translates to: FRQVIPNVNKHRIQYILGPWGNL*CIFKEL
Trigger: CAATTCCTTAAATATGCAGCAAAGATTACCCCAAGG...GCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGACTTGCCGAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR GCA 90 bp ACTCACATGGTAGAAACTAATTCTCCCACAAGCTGTCATCTAACTTGCATATATCCTTGGGGTAATCTTTaGTGCATATTTAAGGAATTG +
Preference number: 4 (lower is better)
Translates to: THMVETNSPTSCHLTCIYPWGNL*CIFKEL
Trigger: CAATTCCTTAAATATGCAGCAAAGATTACCCCAAGG...ATATATGCAAGTTAGATGACAGCTTGTGGGAGAATTAGTTTCTACCATGTGAGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
3UTR CAA 72 bp ATTCCAAATGTTAATAAACACCGCATTCAGTACATATaGGGCAGGAAATGCAAAGCAAACAGAAAGCACTTA +
Preference number: 4 (lower is better)
Translates to: IPNVNKHRIQYI*GRKCKANRKHL
Trigger: TAAGTGCTTTCTGTTTGCTTTGCATTTCCTGCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAAT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS GCA 90 bp GTGGGTAGGGCTCAACACGCACTGTCTTGGTCGCCGGGACCGCGCTaGGGCCGTGGTCGCCCCAGCCCGACCCGCGCGGCGTTGGAGGGG +
Preference number: 5 (lower is better)
Translates to: VGRAQHALSWSPGPR*GRGRPSPTRAALEG
Trigger: CCCCTCCAACGCCGCGCGGGTCGGGCTGGGGCGACCACGGCCGCAGCGCGGTCCCGGCGACCAAGACAGTGCGTGTTGAGCCCTACCCAC
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075540.8
CDS CCA 90 bp TTCCCGCGGACCCCGAGCCGCGCACTGCCTCAACTTTCCGGCCGCTaGGGCTTCTTCCGGGTGCGGACGCAGGCGGGCGCGCGCCAGGAC +
Preference number: 5 (lower is better)
Translates to: FPRTPSRALPQLSGR*GFFRVRTQAGARQD
Trigger: GTCCTGGCGCGCGCCCGCCTGCGTCCGCACCCGGAAGAAGCCCCAGCGGCCGGAAAGTTGAGGCAGTGCGCGGCTCGGGGTCCGCGGGAA
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075540.8
CDS CCA 90 bp TGCCTTTGCTGGCCGAGCACTGGAGCTGTGGTCGCAGGAGGGCTGTaGCACCTGTCCCTGCTGTCCCTGCTGTCCCTGCTGTCCCTGCTG +
Preference number: 5 (lower is better)
Translates to: CLCWPSTGAVVAGGL*HLSLLSLLSLLSLL
Trigger: CAGCAGGGACAGCAGGGACAGCAGGGACAGCAGGGACAGGTGCCACAGCCCTCCTGCGACCACAGCTCCAGTGCTCGGCCAGCAAAGGCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS GCA 90 bp AGATTCGCTCTCTCTGTGGGCTGCTGCAGCTGGAAAGTCTGCCTTTaGTGGCCGAGCACTGGAGCTGTGGTCGCAGGAGGGCTGTGGCAC +
Preference number: 5 (lower is better)
Translates to: RFALSVGCCSWKVCL*WPSTGAVVAGGLWH
Trigger: GTGCCACAGCCCTCCTGCGACCACAGCTCCAGTGCTCGGCCAGCAAAGGCAGACTTTCCAGCTGCAGCAGCCCACAGAGAGAGCGAATCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp GATGCCATTGCAGATGTGACAGGGCTACAGCTGGCCTTCCGGAGCTCGCTTCTCAGCTGGAGGCGGGGTTaGGGCCGGACAAGACGTCTG +
Preference number: 5 (lower is better)
Translates to: DAIADVTGLQLAFRSSLLSWRRG*GRTRRL
Trigger: CAGACGTCTTGTCCGGCCCAAACCCCGCCTCCAGCT...GAGAAGCGAGCTCCGGAAGGCCAGCTGTAGCCCTGTCACATCTGCAATGGCATC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075540.8
CDS GCA 90 bp GTGGAAAGATTCGCTCTCTCTGTGGGCTGCTGCAGCTGGAAAGTCTaGCTTTGCTGGCCGAGCACTGGAGCTGTGGTCGCAGGAGGGCTG +
Preference number: 5 (lower is better)
Translates to: VERFALSVGCCSWKV*LCWPSTGAVVAGGL
Trigger: CAGCCCTCCTGCGACCACAGCTCCAGTGCTCGGCCAGCAAAGGCAGACTTTCCAGCTGCAGCAGCCCACAGAGAGAGCGAATCTTTCCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp ATGAAGATGAACCTGACAAGGGAGTTGGGCTTCGGCAGGGCCACGCACGTACTAGGCATGGGGCGGGGTTaGAGCGGGACACCGGTTCCA +
Preference number: 5 (lower is better)
Translates to: MKMNLTRELGFGRATHVLGMGRG*SGTPVP
Trigger: TGGAACCGGTGTCCCGCTCAAACCCCGCCCCATGCC...TAGTACGTGCGTGGCCCTGCCGAAGCCCAACTCCCTTGTCAGGTTCATCTTCAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075540.8
CDS GCA 90 bp GTGAAGAGGGAGAGGGTGGAAAGATTCGCTCTCTCTGTGGGCTGCTaGAGCTGGAAAGTCTGCCTTTGCTGGCCGAGCACTGGAGCTGTG +
Preference number: 5 (lower is better)
Translates to: VKRERVERFALSVGC*SWKVCLCWPSTGAV
Trigger: CACAGCTCCAGTGCTCGGCCAGCAAAGGCAGACTTTCCAGCTGCAGCAGCCCACAGAGAGAGCGAATCTTTCCACCCTCTCCCTCTTCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS GCA 90 bp ACAGAGGGACAGTGGGTGGCAGTGGTCGCACTCTGGTTGTGCTTCTaGACACATTCTGTGACCCCTCCTTCAGCAGCTTGGGGAGTCTTC +
Preference number: 5 (lower is better)
Translates to: TEGQWVAVVALWLCF*THSVTPPSAAWGVF
Trigger: GAAGACTCCCCAAGCTGCTGAAGGAGGGGTCACAGAATGTGTGCAGAAGCACAACCAGAGTGCGACCACTGCCACCCACTGTCCCTCTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp GAAAGGCAAGGCGTGCGTGCTGGCACAAGGGGAACAAATCCAAGGGCCAGTGTTGGGTCATACTGGCCTTaGGGGTTAGTTGCTGCCAGG +
Preference number: 5 (lower is better)
Translates to: ERQGVRAGTRGTNPRASVGSYWP*GLVAAR
Trigger: CCTGGCAGCAACTAACCCCAAAGGCCAGTATGACCC...AACACTGGCCCTTGGATTTGTTCCCCTTGTGCCAGCACGCACGCCTTGCCTTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS CCA 90 bp CTGTCTGGTGGCTGCCTTGAGAGCTCCTTTGTCTTTCCGTGCAGCTaGTCAGAGCATCTGTCTCCTGAGGTGGATGTCGACTTTCCTGGC +
Preference number: 5 (lower is better)
Translates to: LSGGCLESSFVFPCS*SEHLSPEVDVDFPG
Trigger: GCCAGGAAAGTCGACATCCACCTCAGGAGACAGATGCTCTGACCAGCTGCACGGAAAGACAAAGGAGCTCTCAAGGCAGCCACCAGACAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS CCA 90 bp CTCCCGAGGGCAATGTTCACAGACACAGACTCCTTGGGGTCATACTaGCCTTTGGGGTTAGTTGCTGCCAGGATGGTGGTCCTTGTGTTC +
Preference number: 5 (lower is better)
Translates to: LPRAMFTDTDSLGSY*PLGLVAARMVVLVF
Trigger: GAACACAAGGACCACCATCCTGGCAGCAACTAACCCCAAAGGCCAGTATGACCCCAAGGAGTCTGTGTCTGTGAACATTGCCCTCGGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp ATGAAAGGCAAGGCGTGCGTGCTGGCACAAGGGGAACAAATCCAAGGGCCAGTGGTTCCCTCTCCTCTCTaGGTGGATTACTGTCTGGTG +
Preference number: 5 (lower is better)
Translates to: MKGKACVLAQGEQIQGPVVPSPL*VDYCLV
Trigger: CACCAGACAGTAATCCACCAAGAGAGGAGAGGGAAC...CACTGGCCCTTGGATTTGTTCCCCTTGTGCCAGCACGCACGCCTTGCCTTTCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS TCA 90 bp CTGTGGAACTCCAGCTACAGCTCTGTTCCTGCTGTGTTGAAGTCCTaGGCCTTGGCTTGTCCCTGGGATCATTTCTGCAGGAACCTGGAG +
Preference number: 5 (lower is better)
Translates to: LWNSSYSSVPAVLKS*ALACPWDHFCRNLE
Trigger: CTCCAGGTTCCTGCAGAAATGATCCCAGGGACAAGCCAAGGCTCAGGACTTCAACACAGCAGGAACAGAGCTGTAGCTGGAGTTCCACAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS TCA 90 bp CTGTTCCCTCTCCTCTCTTGGTGGATTACTGTCTGGTGGCTGCCTTaGGAGCTCCTTTGTCTTTCCGTGCAGCTGGTCAGAGCATCTGTC +
Preference number: 5 (lower is better)
Translates to: LFPLLSWWITVWWLP*ELLCLSVQLVRASV
Trigger: GACAGATGCTCTGACCAGCTGCACGGAAAGACAAAGGAGCTCTCAAGGCAGCCACCAGACAGTAATCCACCAAGAGAGGAGAGGGAACAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp ATGAAGATGAACCTGACAAGGGAGTTGGGCTTCGGCAGGGCCACGCACGTACTAGTGGTCGCACTCTGGTaGTGCTTCTGCACACATTCT +
Preference number: 5 (lower is better)
Translates to: MKMNLTRELGFGRATHVLVVALW*CFCTHS
Trigger: AGAATGTGTGCAGAAGCACAACCAGAGTGCGACCAC...TAGTACGTGCGTGGCCCTGCCGAAGCCCAACTCCCTTGTCAGGTTCATCTTCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp TTAGGTGATGAAGATGAACCTGACAAGGGAGTTGGGCTTCGGCAGGGCCACGCATGTCTGGTGGCTGCCTaGAGAGCTCCTTTGTCTTTC +
Preference number: 5 (lower is better)
Translates to: LGDEDEPDKGVGLRQGHACLVAA*RAPLSF
Trigger: GAAAGACAAAGGAGCTCTCAAGGCAGCCACCAGACA...TGCGTGGCCCTGCCGAAGCCCAACTCCCTTGTCAGGTTCATCTTCATCACCTAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp ATGAAGATGAACCTGACAAGGGAGTTGGGCTTCGGCAGGGCCACGCACGTACTATGTCTGGTGGCTGCCTaGAGAGCTCCTTTGTCTTTC +
Preference number: 5 (lower is better)
Translates to: MKMNLTRELGFGRATHVLCLVAA*RAPLSF
Trigger: GAAAGACAAAGGAGCTCTCAAGGCAGCCACCAGACA...TAGTACGTGCGTGGCCCTGCCGAAGCCCAACTCCCTTGTCAGGTTCATCTTCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp TTAGGTGATGAAGATGAACCTGACAAGGGAGTTGGGCTTCGGCAGGGCCACGCAGTTCCCTCTCCTCTCTaGGTGGATTACTGTCTGGTG +
Preference number: 5 (lower is better)
Translates to: LGDEDEPDKGVGLRQGHAVPSPL*VDYCLV
Trigger: CACCAGACAGTAATCCACCAAGAGAGGAGAGGGAAC...TGCGTGGCCCTGCCGAAGCCCAACTCCCTTGTCAGGTTCATCTTCATCACCTAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS GCA 90 bp AGACACAGACTCCTTGGGGTCATACTGGCCTTTGGGGTTAGTTGCTaGCAGGATGGTGGTCCTTGTGTTCAGCTTACAAACAAGGCCAGC +
Preference number: 5 (lower is better)
Translates to: RHRLLGVILAFGVSC*QDGGPCVQLTNKAS
Trigger: GCTGGCCTTGTTTGTAAGCTGAACACAAGGACCACCATCCTGGCAGCAACTAACCCCAAAGGCCAGTATGACCCCAAGGAGTCTGTGTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS GCA 90 bp CACAGACACAGACTCCTTGGGGTCATACTGGCCTTTGGGGTTAGTTaGTGCCAGGATGGTGGTCCTTGTGTTCAGCTTACAAACAAGGCC +
Preference number: 5 (lower is better)
Translates to: HRHRLLGVILAFGVS*CQDGGPCVQLTNKA
Trigger: GGCCTTGTTTGTAAGCTGAACACAAGGACCACCATCCTGGCAGCAACTAACCCCAAAGGCCAGTATGACCCCAAGGAGTCTGTGTCTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS GCA 90 bp GGATTACTGTCTGGTGGCTGCCTTGAGAGCTCCTTTGTCTTTCCGTaGAGCTGGTCAGAGCATCTGTCTCCTGAGGTGGATGTCGACTTT +
Preference number: 5 (lower is better)
Translates to: GLLSGGCLESSFVFP*SWSEHLSPEVDVDF
Trigger: AAAGTCGACATCCACCTCAGGAGACAGATGCTCTGACCAGCTGCACGGAAAGACAAAGGAGCTCTCAAGGCAGCCACCAGACAGTAATCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp TGCCATTGCAGATGTGACAGGGCTACAGCTGGCCTTCCGGAGCTCGCTTCTCTTTGCAGCATCAGTTCTTaGAATTCCACCAGCCAGTAC +
Preference number: 5 (lower is better)
Translates to: CHCRCDRATAGLPELASLCSISS*NSTSQY
Trigger: GTACTGGCTGGTGGAATTCAAAGAACTGATGCTGCA...AAGAGAAGCGAGCTCCGGAAGGCCAGCTGTAGCCCTGTCACATCTGCAATGGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp TTAGGTGATGAAGATGAACCTGACAAGGGAGTTGGGCTTCGGCAGGGCCACGCACATTCTCCTGAGTCTTaGACAGCTGTCACGGTCAGA +
Preference number: 5 (lower is better)
Translates to: LGDEDEPDKGVGLRQGHAHSPES*TAVTVR
Trigger: TCTGACCGTGACAGCTGTCAAAGACTCAGGAGAATG...TGCGTGGCCCTGCCGAAGCCCAACTCCCTTGTCAGGTTCATCTTCATCACCTAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS GCA 90 bp TCTGCACCAGATCTCTCTGTGGAACTCCAGCTACAGCTCTGTTCCTaGTGTGTTGAAGTCCTGAGCCTTGGCTTGTCCCTGGGATCATTT +
Preference number: 5 (lower is better)
Translates to: SAPDLSVELQLQLCS*CVEVLSLGLSLGSF
Trigger: AAATGATCCCAGGGACAAGCCAAGGCTCAGGACTTCAACACAGCAGGAACAGAGCTGTAGCTGGAGTTCCACAGAGAGATCTGGTGCAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS CCA 90 bp GAGCGTGAGCTTCTGCTAATCGGATCAAGCTTTCTAACAGGCGGATaGTTGTCCGGGCTGCATTCCGGGAATCACTCTGCCTTTGCATTT +
Preference number: 5 (lower is better)
Translates to: ERELLLIGSSFLTGG*LSGLHSGNHSAFAF
Trigger: AAATGCAAAGGCAGAGTGATTCCCGGAATGCAGCCCGGACAACCATCCGCCTGTTAGAAAGCTTGATCCGATTAGCAGAAGCTCACGCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp TTAGGTGATGAAGATGAACCTGACAAGGGAGTTGGGCTTCGGCAGGGCCACGCATCCAACAGACAGCCTTaGCACCTGCTCCTGAATTTT +
Preference number: 5 (lower is better)
Translates to: LGDEDEPDKGVGLRQGHASNRQP*HLLLNF
Trigger: AAAATTCAGGAGCAGGTGCAAAGGCTGTCTGTTGGA...TGCGTGGCCCTGCCGAAGCCCAACTCCCTTGTCAGGTTCATCTTCATCACCTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp GAAAGGCAAGGCGTGCGTGCTGGCACAAGGGGAACAAATCCAAGGGCCAGTGTTCCAGCTTCTAATAATTaGCTTCTTTGCTGTGGCCCA +
Preference number: 5 (lower is better)
Translates to: ERQGVRAGTRGTNPRASVPASNN*LLCCGP
Trigger: TGGGCCACAGCAAAGAAGCAAATTATTAGAAGCTGG...AACACTGGCCCTTGGATTTGTTCCCCTTGTGCCAGCACGCACGCCTTGCCTTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS TCA 90 bp CCTCCCAGTCAAAATCTAATGCTTCGTCATCTAGTTCCGACAGAGTaGAGAGGGAGAGGGTGGAAAGATTCGCTCTCTCTGTGGGCTGCT +
Preference number: 5 (lower is better)
Translates to: PPSQNLMLRHLVPTE*RGRGWKDSLSLWAA
Trigger: AGCAGCCCACAGAGAGAGCGAATCTTTCCACCCTCTCCCTCTTCACTCTGTCGGAACTAGATGACGAAGCATTAGATTTTGACTGGGAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS GCA 90 bp AAGGAAGTGTGGAGAGCATTCACACCTCCTAGCAGAGCACCTCCCTaGATTGAAGACTCCATCACAGATACAGCTGTAACGGCATCTTCC +
Preference number: 5 (lower is better)
Translates to: KEVWRAFTPPSRAPP*IEDSITDTAVTASS
Trigger: GGAAGATGCCGTTACAGCTGTATCTGTGATGGAGTCTTCAATGCAGGGAGGTGCTCTGCTAGGAGGTGTGAATGCTCTCCACACTTCCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp CAGGGTTTTTCTAGGCCACCCCAGTGCATCTTACCACAACTTGTGTTACACCAGGAAGGGACTGCAGAATaGCCAAGGCTGACCTTCGAA +
Preference number: 5 (lower is better)
Translates to: QGFSRPPQCILPQLVLHQEGTAE*PRLTFE
Trigger: TTCGAAGGTCAGCCTTGGCAATTCTGCAGTCCCTTC...CTGGTGTAACACAAGTTGTGGTAAGATGCACTGGGGTGGCCTAGAAAAACCCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000218549.3
CDS-3UTR CAA 90 bp ATGGTGATGATGCACAGGAGAGCCATGGGATGCAGGTTATGCGGTGCCTTCACAAAGTGTCCCACATCCTaGGTTTTGGGAATGTGTTCC +
Preference number: 5 (lower is better)
Translates to: MVMMHRRAMGCRLCGAFTKCPTS*VLGMCS
Trigger: GGAACACATTCCCAAAACCAAGGATGTGGGACACTT...TGTGAAGGCACCGCATAACCTGCATCCCATGGCTCTCCTGTGCATCATCACCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000218549.3
ENSMUST00000219838.3
CDS-3UTR CAA 90 bp ATGAAGATGAACCTGACAAGGGAGTTGGGCTTCGGCAGGGCCACGCACGTACTAAGGTCATCTCCAGATTaGCAACTGTCAACTAGGTCA +
Preference number: 5 (lower is better)
Translates to: MKMNLTRELGFGRATHVLRSSPD*QLSTRS
Trigger: TGACCTAGTTGACAGTTGCAAATCTGGAGATGACCT...TAGTACGTGCGTGGCCCTGCCGAAGCCCAACTCCCTTGTCAGGTTCATCTTCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp TGCCATTGCAGATGTGACAGGGCTACAGCTGGCCTTCCGGAGCTCGCTTCTCTTAGCAACACTTATGGTTaGTTGCTCCATTGCTTCATG +
Preference number: 5 (lower is better)
Translates to: CHCRCDRATAGLPELASLSNTYG*LLHCFM
Trigger: CATGAAGCAATGGAGCAACAAACCATAAGTGTTGCT...AAGAGAAGCGAGCTCCGGAAGGCCAGCTGTAGCCCTGTCACATCTGCAATGGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp ATGAAAGGCAAGGCGTGCGTGCTGGCACAAGGGGAACAAATCCAAGGGCCAGTGCAGCTGCTTCTCTTCTaGTTCTTTGTTGGGGAATTT +
Preference number: 5 (lower is better)
Translates to: MKGKACVLAQGEQIQGPVQLLLF*FFVGEF
Trigger: AAATTCCCCAACAAAGAACAAGAAGAGAAGCAGCTG...CACTGGCCCTTGGATTTGTTCCCCTTGTGCCAGCACGCACGCCTTGCCTTTCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS GCA 90 bp AGGAGAAGCTTGCCAGTCTGGCTATGGTGCCAGCATGAACCTTGCTaGTTTTATTACCGCAGGAAACCCCTTCCTTTCTGTCTTTCTCAC +
Preference number: 5 (lower is better)
Translates to: RRSLPVWLWCQHEPC*FYYRRKPLPFCLSH
Trigger: GTGAGAAAGACAGAAAGGAAGGGGTTTCCTGCGGTAATAAAAGCAGCAAGGTTCATGCTGGCACCATAGCCAGACTGGCAAGCTTCTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS CCA 90 bp GACAAACAGGCAAACCTGATATCCTGGCATGAAGATTCTGCTTCATaGATAACCCCTCCGTCTCAGGAAGGGACTGCAGAATTGCCAAGG +
Preference number: 5 (lower is better)
Translates to: DKQANLISWHEDSAS*ITPPSQEGTAELPR
Trigger: CCTTGGCAATTCTGCAGTCCCTTCCTGAGACGGAGGGGTTATCCATGAAGCAGAATCTTCATGCCAGGATATCAGGTTTGCCTGTTTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000218549.3
ENSMUST00000219838.3
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp AGTGCTTGGCATGCCACAGGATTGGTTGGCAATCATTTCATGTCACATCAGCCACCCACATCCTTGGTTTaGGGAATGTGTTCCCTGACC +
Preference number: 5 (lower is better)
Translates to: SAWHATGLVGNHFMSHQPPTSLV*GMCSLT
Trigger: GGTCAGGGAACACATTCCCAAAACCAAGGATGTGGG...TGGCTGATGTGACATGAAATGATTGCCAACCAATCCTGTGGCATGCCAAGCACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
CDS-3UTR CAA 90 bp CGTGCTGGCACAAGGGGAACAAATCCAAGGGCCAGTGTTTCTGTAAGCTACGGTATACATCCCAAAAACTaGAGGACACAAGCTGGCCAA +
Preference number: 5 (lower is better)
Translates to: RAGTRGTNPRASVSVSYGIHPKN*RTQAGQ
Trigger: TTGGCCAGCTTGTGTCCTCAAGTTTTTGGGATGTAT...ACCGTAGCTTACAGAAACACTGGCCCTTGGATTTGTTCCCCTTGTGCCAGCACG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp TTAGGTGATGAAGATGAACCTGACAAGGGAGTTGGGCTTCGGCAGGGCCACGCAGTCCTGTCATGTTCTTaGAGGCTGTTAAATTCGTCA +
Preference number: 5 (lower is better)
Translates to: LGDEDEPDKGVGLRQGHAVLSCS*RLLNSS
Trigger: TGACGAATTTAACAGCCTCAAAGAACATGACAGGAC...TGCGTGGCCCTGCCGAAGCCCAACTCCCTTGTCAGGTTCATCTTCATCACCTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp TGCCATTGCAGATGTGACAGGGCTACAGCTGGCCTTCCGGAGCTCGCTTCTCTTAACACTTATGGTTTGTaGCTCCATTGCTTCATGGAT +
Preference number: 5 (lower is better)
Translates to: CHCRCDRATAGLPELASLNTYGL*LHCFMD
Trigger: ATCCATGAAGCAATGGAGCAACAAACCATAAGTGTT...AAGAGAAGCGAGCTCCGGAAGGCCAGCTGTAGCCCTGTCACATCTGCAATGGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp TTAGGTGATGAAGATGAACCTGACAAGGGAGTTGGGCTTCGGCAGGGCCACGCAAGCAACACTTATGGTTaGTTGCTCCATTGCTTCATG +
Preference number: 5 (lower is better)
Translates to: LGDEDEPDKGVGLRQGHASNTYG*LLHCFM
Trigger: CATGAAGCAATGGAGCAACAAACCATAAGTGTTGCT...TGCGTGGCCCTGCCGAAGCCCAACTCCCTTGTCAGGTTCATCTTCATCACCTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp GATGCCATTGCAGATGTGACAGGGCTACAGCTGGCCTTCCGGAGCTCGCTTCTCTCTTCTTGTTCTTTGTaGGGGAATTTTAGAACTGTC +
Preference number: 5 (lower is better)
Translates to: DAIADVTGLQLAFRSSLLSSCSL*GNFRTV
Trigger: GACAGTTCTAAAATTCCCCAACAAAGAACAAGAAGA...GAGAAGCGAGCTCCGGAAGGCCAGCTGTAGCCCTGTCACATCTGCAATGGCATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS TCA 90 bp CGAACTCCAAGACCTTCACCAGACTCGTTCGGATCACTGTCCCAGTaGCAGATAAGAAGTGTCCCACATCCTTGGTTTTGGGAATGTGTT +
Preference number: 5 (lower is better)
Translates to: RTPRPSPDSFGSLSQ*QIRSVPHPWFWECV
Trigger: AACACATTCCCAAAACCAAGGATGTGGGACACTTCTTATCTGTCACTGGGACAGTGATCCGAACGAGTCTGGTGAAGGTCTTGGAGTTCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000218549.3
ENSMUST00000219838.3
ENSMUST00000237608.2
CDS CCA 90 bp TTCTGTAACCTTTCCAGTCTTCGAAGTTCTTCCTGCAAGAGGCCCTaGAGTTCCAGCTTTTCCAGAATGAGTTCACACTGCCTCTGGTAC +
Preference number: 5 (lower is better)
Translates to: FCNLSSLRSSSCKRP*SSSFSRMSSHCLWY
Trigger: GTACCAGAGGCAGTGTGAACTCATTCTGGAAAAGCTGGAACTCCAGGGCCTCTTGCAGGAAGAACTTCGAAGACTGGAAAGGTTACAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS CCA 90 bp TTTCTGCAGGAACCTGGAGCCACCTCCTCCTCTAGTGAATGTGACTaGCATTGGTGTACACTCTCATTCTGTAACCTTTCCAGTCTTCGA +
Preference number: 5 (lower is better)
Translates to: FLQEPGATSSSSECD*HWCTLSFCNLSSLR
Trigger: TCGAAGACTGGAAAGGTTACAGAATGAGAGTGTACACCAATGCCAGTCACATTCACTAGAGGAGGAGGTGGCTCCAGGTTCCTGCAGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp ATTTCTGAGTGCCACCATCCTGCCATTTGGTCTGGATATGTGAGAGAAGAAGCTCCCACATCCTTGGTTTaGGGAATGTGTTCCCTGACC +
Preference number: 5 (lower is better)
Translates to: ISECHHPAIWSGYVREEAPTSLV*GMCSLT
Trigger: GGTCAGGGAACACATTCCCAAAACCAAGGATGTGGG...AGCTTCTTCTCTCACATATCCAGACCAAATGGCAGGATGGTGGCACTCAGAAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp CAGGGTTTTTCTAGGCCACCCCAGTGCATCTTACCACAACTTGTGTTACACCAGAAGTGTCCCACATCCTaGGTTTTGGGAATGTGTTCC +
Preference number: 5 (lower is better)
Translates to: QGFSRPPQCILPQLVLHQKCPTS*VLGMCS
Trigger: GGAACACATTCCCAAAACCAAGGATGTGGGACACTT...CTGGTGTAACACAAGTTGTGGTAAGATGCACTGGGGTGGCCTAGAAAAACCCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000218549.3
CDS-3UTR CAA 90 bp CAGGGTTTTTCTAGGCCACCCCAGTGCATCTTACCACAACTTGTGTTACACCAGTCCAACAGACAGCCTTaGCACCTGCTCCTGAATTTT +
Preference number: 5 (lower is better)
Translates to: QGFSRPPQCILPQLVLHQSNRQP*HLLLNF
Trigger: AAAATTCAGGAGCAGGTGCAAAGGCTGTCTGTTGGA...CTGGTGTAACACAAGTTGTGGTAAGATGCACTGGGGTGGCCTAGAAAAACCCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000218549.3
CDS-3UTR CAA 90 bp ATGAAAGGCAAGGCGTGCGTGCTGGCACAAGGGGAACAAATCCAAGGGCCAGTGTTGCTCATTATTCACTaGGACATAGTTGGCTTTCAA +
Preference number: 5 (lower is better)
Translates to: MKGKACVLAQGEQIQGPVLLIIH*DIVGFQ
Trigger: TTGAAAGCCAACTATGTCCAAGTGAATAATGAGCAA...CACTGGCCCTTGGATTTGTTCCCCTTGTGCCAGCACGCACGCCTTGCCTTTCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp ATGAAGATGAACCTGACAAGGGAGTTGGGCTTCGGCAGGGCCACGCACGTACTATTCCGTCTCTTTCTTTaGGGTGTTCCTGATCTTTTT +
Preference number: 5 (lower is better)
Translates to: MKMNLTRELGFGRATHVLFRLFL*GVPDLF
Trigger: AAAAAGATCAGGAACACCCAAAAGAAAGAGACGGAA...TAGTACGTGCGTGGCCCTGCCGAAGCCCAACTCCCTTGTCAGGTTCATCTTCAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp GAAAGGCAAGGCGTGCGTGCTGGCACAAGGGGAACAAATCCAAGGGCCAGTGTTTGTTTAAATGTGAATTaGGCCAGCTTTACTGTTGGA +
Preference number: 5 (lower is better)
Translates to: ERQGVRAGTRGTNPRASVCLNVN*ASFTVG
Trigger: TCCAACAGTAAAGCTGGCCAAATTCACATTTAAACA...AACACTGGCCCTTGGATTTGTTCCCCTTGTGCCAGCACGCACGCCTTGCCTTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp CGTGCTGGCACAAGGGGAACAAATCCAAGGGCCAGTGTTTCTGTAAGCTACGGTCAGCTGCTTCTCTTCTaGTTCTTTGTTGGGGAATTT +
Preference number: 5 (lower is better)
Translates to: RAGTRGTNPRASVSVSYGQLLLF*FFVGEF
Trigger: AAATTCCCCAACAAAGAACAAGAAGAGAAGCAGCTG...ACCGTAGCTTACAGAAACACTGGCCCTTGGATTTGTTCCCCTTGTGCCAGCACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp AAAGCACTTAGCTGCCTTGTTAGATTTCTGAGTGCCACCATCCTGCCATTTGGTGTTCCCTCTCCTCTCTaGGTGGATTACTGTCTGGTG +
Preference number: 5 (lower is better)
Translates to: KALSCLVRFLSATILPFGVPSPL*VDYCLV
Trigger: CACCAGACAGTAATCCACCAAGAGAGGAGAGGGAAC...ACCAAATGGCAGGATGGTGGCACTCAGAAATCTAACAAGGCAGCTAAGTGCTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS TCA 90 bp AGTACCATGGCCACAGCAAGCTTCACTAGATACATCCCAAAAACTTaGGGACACAAGCTGGCCAATATTTCATTCCTCCCTGCAAAGGGG +
Preference number: 5 (lower is better)
Translates to: STMATASFTRYIPKT*GHKLANISFLPAKG
Trigger: CCCCTTTGCAGGGAGGAATGAAATATTGGCCAGCTTGTGTCCTCAAGTTTTTGGGATGTATCTAGTGAAGCTTGCTGTGGCCATGGTACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000218549.3
ENSMUST00000219838.3
ENSMUST00000237608.2
CDS TCA 90 bp GGACTTGATTGCTCACTTCAGACAGTGTGGGGTGGAGATTCCGAATaGGGCAGAAGTAGGTTTTCATCTTCTCCATGCTCCACAGATTCT +
Preference number: 5 (lower is better)
Translates to: GLDCSLQTVWGGDSE*GRSRFSSSPCSTDS
Trigger: AGAATCTGTGGAGCATGGAGAAGATGAAAACCTACTTCTGCCTCATTCGGAATCTCCACCCCACACTGTCTGAAGTGAGCAATCAAGTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp GGAGAGCCATGGGATGCAGGTTATGCGGTGCCTTCACATCTAAGCTTTTATACTTCCAACAGACAGCCTTaGCACCTGCTCCTGAATTTT +
Preference number: 5 (lower is better)
Translates to: GEPWDAGYAVPSHLSFYTSNRQP*HLLLNF
Trigger: AAAATTCAGGAGCAGGTGCAAAGGCTGTCTGTTGGA...AGTATAAAAGCTTAGATGTGAAGGCACCGCATAACCTGCATCCCATGGCTCTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
CDS-3UTR CAA 90 bp ATTTCTGAGTGCCACCATCCTGCCATTTGGTCTGGATATGTGAGAGAAGAAGCTGAGCACCTCCCTGCATaGAAGACTCCATCACAGATA +
Preference number: 5 (lower is better)
Translates to: ISECHHPAIWSGYVREEAEHLPA*KTPSQI
Trigger: TATCTGTGATGGAGTCTTCAATGCAGGGAGGTGCTC...AGCTTCTTCTCTCACATATCCAGACCAAATGGCAGGATGGTGGCACTCAGAAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp CACCATCCTGCCATTTGGTCTGGATATGTGAGAGAAGAAGCTCAGAATAGAACTGTGGTCGCACTCTGGTaGTGCTTCTGCACACATTCT +
Preference number: 5 (lower is better)
Translates to: HHPAIWSGYVREEAQNRTVVALW*CFCTHS
Trigger: AGAATGTGTGCAGAAGCACAACCAGAGTGCGACCAC...AGTTCTATTCTGAGCTTCTTCTCTCACATATCCAGACCAAATGGCAGGATGGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp ATGAAGATGAACCTGACAAGGGAGTTGGGCTTCGGCAGGGCCACGCACGTACTATCTTCTTGTTCTTTGTaGGGGAATTTTAGAACTGTC +
Preference number: 5 (lower is better)
Translates to: MKMNLTRELGFGRATHVLSSCSL*GNFRTV
Trigger: GACAGTTCTAAAATTCCCCAACAAAGAACAAGAAGA...TAGTACGTGCGTGGCCCTGCCGAAGCCCAACTCCCTTGTCAGGTTCATCTTCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp CACCATCCTGCCATTTGGTCTGGATATGTGAGAGAAGAAGCTCAGAATAGAACTTGTCTGGTGGCTGCCTaGAGAGCTCCTTTGTCTTTC +
Preference number: 5 (lower is better)
Translates to: HHPAIWSGYVREEAQNRTCLVAA*RAPLSF
Trigger: GAAAGACAAAGGAGCTCTCAAGGCAGCCACCAGACA...AGTTCTATTCTGAGCTTCTTCTCTCACATATCCAGACCAAATGGCAGGATGGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS TCA 90 bp CAGATAAGAAGTGTCCCACATCCTTGGTTTTGGGAATGTGTTCCCTaGCCAGTTCTGGACAAACAGGCAAACCTGATATCCTGGCATGAA +
Preference number: 5 (lower is better)
Translates to: QIRSVPHPWFWECVP*PVLDKQANLISWHE
Trigger: TTCATGCCAGGATATCAGGTTTGCCTGTTTGTCCAGAACTGGTCAGGGAACACATTCCCAAAACCAAGGATGTGGGACACTTCTTATCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000218549.3
ENSMUST00000219838.3
ENSMUST00000237608.2
CDS TCA 90 bp ACCCACGTGAGTCCAGCAGGAAGATCATGCACAGTGAGATGGCATTaGAGCACAGATTTGCAACTGTCAACTAGGTCATCTTCCAGAATA +
Preference number: 5 (lower is better)
Translates to: THVSPAGRSCTVRWH*STDLQLSTRSSSRI
Trigger: TATTCTGGAAGATGACCTAGTTGACAGTTGCAAATCTGTGCTTCAATGCCATCTCACTGTGCATGATCTTCCTGCTGGACTCACGTGGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218549.3
CDS GCA 90 bp TGTACACTCTCATTCTGTAACCTTTCCAGTCTTCGAAGTTCTTCCTaGAAGAGGCCCTGGAGTTCCAGCTTTTCCAGAATGAGTTCACAC +
Preference number: 5 (lower is better)
Translates to: CTLSFCNLSSLRSSS*KRPWSSSFSRMSSH
Trigger: GTGTGAACTCATTCTGGAAAAGCTGGAACTCCAGGGCCTCTTGCAGGAAGAACTTCGAAGACTGGAAAGGTTACAGAATGAGAGTGTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp AGGGTTTTTCTAGGCCACCCCAGTGCATCTTACCACAACTTGTGTTACACCAGAATACATCCCAAAAACTaGAGGACACAAGCTGGCCAA +
Preference number: 5 (lower is better)
Translates to: RVFLGHPSASYHNLCYTRIHPKN*RTQAGQ
Trigger: TTGGCCAGCTTGTGTCCTCAAGTTTTTGGGATGTAT...TCTGGTGTAACACAAGTTGTGGTAAGATGCACTGGGGTGGCCTAGAAAAACCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000218549.3
CDS-3UTR CAA 90 bp AAAGCACTTAGCTGCCTTGTTAGATTTCTGAGTGCCACCATCCTGCCATTTGGTCCAGGATGGTGGTCCTaGTGTTCAGCTTACAAACAA +
Preference number: 5 (lower is better)
Translates to: KALSCLVRFLSATILPFGPGWWS*CSAYKQ
Trigger: TTGTTTGTAAGCTGAACACAAGGACCACCATCCTGG...ACCAAATGGCAGGATGGTGGCACTCAGAAATCTAACAAGGCAGCTAAGTGCTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp GTTAATAAACACCGCATTCAGTACATATTGGGCAGGAAATGCAAAGCAAACAGAGGGTCATACTGGCCTTaGGGGTTAGTTGCTGCCAGG +
Preference number: 5 (lower is better)
Translates to: VNKHRIQYILGRKCKANRGSYWP*GLVAAR
Trigger: CCTGGCAGCAACTAACCCCAAAGGCCAGTATGACCC...TCTGTTTGCTTTGCATTTCCTGCCCAATATGTACTGAATGCGGTGTTTATTAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp ATTTCTGAGTGCCACCATCCTGCCATTTGGTCTGGATATGTGAGAGAAGAAGCTGTATCGAAGGAGGACTaGATTGCTCACTTCAGACAG +
Preference number: 5 (lower is better)
Translates to: ISECHHPAIWSGYVREEAVSKED*IAHFRQ
Trigger: CTGTCTGAAGTGAGCAATCAAGTCCTCCTTCGATAC...AGCTTCTTCTCTCACATATCCAGACCAAATGGCAGGATGGTGGCACTCAGAAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp AAAGCACTTAGCTGCCTTGTTAGATTTCTGAGTGCCACCATCCTGCCATTTGGTACTCTGCCTTTGCATTaGGTAGTATCGAAGGAGGAC +
Preference number: 5 (lower is better)
Translates to: KALSCLVRFLSATILPFGTLPLH*VVSKED
Trigger: GTCCTCCTTCGATACTACCAAATGCAAAGGCAGAGT...ACCAAATGGCAGGATGGTGGCACTCAGAAATCTAACAAGGCAGCTAAGTGCTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp GAGTGCCACCATCCTGCCATTTGGTCTGGATATGTGAGAGAAGAAGCTCAGAATGGAATCACTCTGCCTTaGCATTTGGTAGTATCGAAG +
Preference number: 5 (lower is better)
Translates to: ECHHPAIWSGYVREEAQNGITLP*HLVVSK
Trigger: CTTCGATACTACCAAATGCAAAGGCAGAGTGATTCC...ATTCTGAGCTTCTTCTCTCACATATCCAGACCAAATGGCAGGATGGTGGCACTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp AGGGTTTTTCTAGGCCACCCCAGTGCATCTTACCACAACTTGTGTTACACCAGACACAGTGAGATGGCATaGAAGCACAGATTTGCAACT +
Preference number: 5 (lower is better)
Translates to: RVFLGHPSASYHNLCYTRHSEMA*KHRFAT
Trigger: AGTTGCAAATCTGTGCTTCAATGCCATCTCACTGTG...TCTGGTGTAACACAAGTTGTGGTAAGATGCACTGGGGTGGCCTAGAAAAACCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000218549.3
CDS-3UTR CAA 90 bp CAAAGCAAACAGAAAGCACTTAGCTGCCTTGTTAGATTTCTGAGTGCCACCATCTCCAACAGACAGCCTTaGCACCTGCTCCTGAATTTT +
Preference number: 5 (lower is better)
Translates to: QSKQKALSCLVRFLSATISNRQP*HLLLNF
Trigger: AAAATTCAGGAGCAGGTGCAAAGGCTGTCTGTTGGA...GATGGTGGCACTCAGAAATCTAACAAGGCAGCTAAGTGCTTTCTGTTTGCTTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp GAGTGCCACCATCCTGCCATTTGGTCTGGATATGTGAGAGAAGAAGCTCAGAATCAGCTGCTTCTCTTCTaGTTCTTTGTTGGGGAATTT +
Preference number: 5 (lower is better)
Translates to: ECHHPAIWSGYVREEAQNQLLLF*FFVGEF
Trigger: AAATTCCCCAACAAAGAACAAGAAGAGAAGCAGCTG...ATTCTGAGCTTCTTCTCTCACATATCCAGACCAAATGGCAGGATGGTGGCACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS TCA 90 bp AGTGTTCCCAGAAGTCTTCAAATTCTTTTCGAGTGTCCTCATCCATaGCCATCCCCGAGGATTGCTCATTATTCACTTGGACATAGTTGG +
Preference number: 5 (lower is better)
Translates to: SVPRSLQILFECPHP*PSPRIAHYSLGHSW
Trigger: CCAACTATGTCCAAGTGAATAATGAGCAATCCTCGGGGATGGTCATGGATGAGGACACTCGAAAAGAATTTGAAGACTTCTGGGAACACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000218549.3
ENSMUST00000219838.3
ENSMUST00000237608.2
CDS TCA 90 bp TTTACTGTTGGAGTCTCCATACCTTCAGGTTCAGGCTCTTCCACCTaGGCAGATTTCCGTCTCTTTCTTTTGGGTGTTCCTGATCTTTTT +
Preference number: 5 (lower is better)
Translates to: FTVGVSIPSGSGSST*ADFRLFLLGVPDLF
Trigger: AAAAAGATCAGGAACACCCAAAAGAAAGAGACGGAAATCTGCTCAGGTGGAAGAGCCTGAACCTGAAGGTATGGAGACTCCAACAGTAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS GCA 90 bp CATTCATGGCTCCTGATGATGGAAGATGTCCAGCTTCTAATAATTTaGTTCTTTGCTGTGGCCCATGCTTCTCCTTGCCCTGAGATTTAT +
Preference number: 5 (lower is better)
Translates to: HSWLLMMEDVQLLII*FFAVAHASPCPEIY
Trigger: ATAAATCTCAGGGCAAGGAGAAGCATGGGCCACAGCAAAGAAGCAAATTATTAGAAGCTGGACATCTTCCATCATCAGGAGCCATGAATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS CCA 90 bp CAGCAAGCTTCACTAGATACATCCCAAAAACTTGAGGACACAAGCTaGCCAATATTTCATTCCTCCCTGCAAAGGGGTCACTCTTATAGT +
Preference number: 5 (lower is better)
Translates to: QQASLDTSQKLEDTS*PIFHSSLQRGHSYS
Trigger: ACTATAAGAGTGACCCCTTTGCAGGGAGGAATGAAATATTGGCCAGCTTGTGTCCTCAAGTTTTTGGGATGTATCTAGTGAAGCTTGCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000218549.3
ENSMUST00000219838.3
ENSMUST00000237608.2
CDS CCA 90 bp CAGTTTTGTCTTCTGTTTAAATGTGAATTTGGCCAGCTTTACTGTTaGAGTCTCCATACCTTCAGGTTCAGGCTCTTCCACCTGAGCAGA +
Preference number: 5 (lower is better)
Translates to: QFCLLFKCEFGQLYC*SLHTFRFRLFHLSR
Trigger: TCTGCTCAGGTGGAAGAGCCTGAACCTGAAGGTATGGAGACTCCAACAGTAAAGCTGGCCAAATTCACATTTAAACAGAAGACAAAACTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp GGATATGTGAGAGAAGAAGCTCAGAATAGAACTCCTCTAGTAAAAACCAAACCAGAAGGGACTGCAGAATaGCCAAGGCTGACCTTCGAA +
Preference number: 5 (lower is better)
Translates to: GYVREEAQNRTPLVKTKPEGTAE*PRLTFE
Trigger: TTCGAAGGTCAGCCTTGGCAATTCTGCAGTCCCTTC...TGGTTTGGTTTTTACTAGAGGAGTTCTATTCTGAGCTTCTTCTCTCACATATCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp CTCTGGCTCTCATTAACGTGTAAGATCAGGGTATTTTCTGTAGTTGACATAATCCCCACATCCTTGGTTTaGGGAATGTGTTCCCTGACC +
Preference number: 5 (lower is better)
Translates to: LWLSLTCKIRVFSVVDIIPTSLV*GMCSLT
Trigger: GGTCAGGGAACACATTCCCAAAACCAAGGATGTGGG...GATTATGTCAACTACAGAAAATACCCTGATCTTACACGTTAATGAGAGCCAGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218549.3
CDS-3UTR CAA 90 bp CAAAGCAAACAGAAAGCACTTAGCTGCCTTGTTAGATTTCTGAGTGCCACCATCAGGTCATCTCCAGATTaGCAACTGTCAACTAGGTCA +
Preference number: 5 (lower is better)
Translates to: QSKQKALSCLVRFLSATIRSSPD*QLSTRS
Trigger: TGACCTAGTTGACAGTTGCAAATCTGGAGATGACCT...GATGGTGGCACTCAGAAATCTAACAAGGCAGCTAAGTGCTTTCTGTTTGCTTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp ACCTGGTCTGACCCTTCATTTCTGTTACTGCTTTACCAAGAAAGTCTATGCGGAATACATCCCAAAAACTaGAGGACACAAGCTGGCCAA +
Preference number: 5 (lower is better)
Translates to: TWSDPSFLLLLYQESLCGIHPKN*RTQAGQ
Trigger: TTGGCCAGCTTGTGTCCTCAAGTTTTTGGGATGTAT...TCCGCATAGACTTTCTTGGTAAAGCAGTAACAGAAATGAAGGGTCAGACCAGGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
CDS-3UTR CAA 90 bp GTTAATAAACACCGCATTCAGTACATATTGGGCAGGAAATGCAAAGCAAACAGAACAGACACAGACTCCTaGGGGTCATACTGGCCTTTG +
Preference number: 5 (lower is better)
Translates to: VNKHRIQYILGRKCKANRTDTDS*GSYWPL
Trigger: CAAAGGCCAGTATGACCCCAAGGAGTCTGTGTCTGT...TCTGTTTGCTTTGCATTTCCTGCCCAATATGTACTGAATGCGGTGTTTATTAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp GTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCAGGAAATGCACAGACACAGACTCCTaGGGGTCATACTGGCCTTTG +
Preference number: 5 (lower is better)
Translates to: VIPNVNKHRIQYILGRKCTDTDS*GSYWPL
Trigger: CAAAGGCCAGTATGACCCCAAGGAGTCTGTGTCTGT...GCATTTCCTGCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp CGCTACATATACATTCTTCTTCTGAGCCATATCCCAACCCAACGTTCTTGGTTTGTATCGAAGGAGGACTaGATTGCTCACTTCAGACAG +
Preference number: 5 (lower is better)
Translates to: RYIYILLLSHIPTQRSWFVSKED*IAHFRQ
Trigger: CTGTCTGAAGTGAGCAATCAAGTCCTCCTTCGATAC...AAACCAAGAACGTTGGGTTGGGATATGGCTCAGAAGAAGAATGTATATGTAGCG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp GGATATGTGAGAGAAGAAGCTCAGAATAGAACTCCTCTAGTAAAAACCAAACCAGTGGTCGCACTCTGGTaGTGCTTCTGCACACATTCT +
Preference number: 5 (lower is better)
Translates to: GYVREEAQNRTPLVKTKPVVALW*CFCTHS
Trigger: AGAATGTGTGCAGAAGCACAACCAGAGTGCGACCAC...TGGTTTGGTTTTTACTAGAGGAGTTCTATTCTGAGCTTCTTCTCTCACATATCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp TTTCGGCAAGTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCGTGGTCGCACTCTGGTaGTGCTTCTGCACACATTCT +
Preference number: 5 (lower is better)
Translates to: FRQVIPNVNKHRIQYILGVVALW*CFCTHS
Trigger: AGAATGTGTGCAGAAGCACAACCAGAGTGCGACCAC...GCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGACTTGCCGAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp AAAGCACTTAGCTGCCTTGTTAGATTTCTGAGTGCCACCATCCTGCCATTTGGTCAGCTGCTTCTCTTCTaGTTCTTTGTTGGGGAATTT +
Preference number: 5 (lower is better)
Translates to: KALSCLVRFLSATILPFGQLLLF*FFVGEF
Trigger: AAATTCCCCAACAAAGAACAAGAAGAGAAGCAGCTG...ACCAAATGGCAGGATGGTGGCACTCAGAAATCTAACAAGGCAGCTAAGTGCTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp TTTCGGCAAGTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCTGTCTGGTGGCTGCCTaGAGAGCTCCTTTGTCTTTC +
Preference number: 5 (lower is better)
Translates to: FRQVIPNVNKHRIQYILGCLVAA*RAPLSF
Trigger: GAAAGACAAAGGAGCTCTCAAGGCAGCCACCAGACA...GCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGACTTGCCGAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp CTTCTTCTGAGCCATATCCCAACCCAACGTTCTTGGTTTTATAAAAAGACAAACGTTCCCTCTCCTCTCTaGGTGGATTACTGTCTGGTG +
Preference number: 5 (lower is better)
Translates to: LLLSHIPTQRSWFYKKTNVPSPL*VDYCLV
Trigger: CACCAGACAGTAATCCACCAAGAGAGGAGAGGGAAC...GTTTGTCTTTTTATAAAACCAAGAACGTTGGGTTGGGATATGGCTCAGAAGAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp ACTCACATGGTAGAAACTAATTCTCCCACAAGCTGTCATCTAACTTGCATATATGAAGGGACTGCAGAATaGCCAAGGCTGACCTTCGAA +
Preference number: 5 (lower is better)
Translates to: THMVETNSPTSCHLTCIYEGTAE*PRLTFE
Trigger: TTCGAAGGTCAGCCTTGGCAATTCTGCAGTCCCTTC...ATATATGCAAGTTAGATGACAGCTTGTGGGAGAATTAGTTTCTACCATGTGAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
CDS-3UTR CAA 90 bp TTTAGTCATCTCTGCCCACCAGACAGGGAAACTTCTCCGTTTTATTTTATTATTCCCACATCCTTGGTTTaGGGAATGTGTTCCCTGACC +
Preference number: 5 (lower is better)
Translates to: FSHLCPPDRETSPFYFIIPTSLV*GMCSLT
Trigger: GGTCAGGGAACACATTCCCAAAACCAAGGATGTGGG...AATAATAAAATAAAACGGAGAAGTTTCCCTGTCTGGTGGGCAGAGATGACTAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp GTGTATGCTTCCTTACATCTAAAACTGGGAAACCACGACCATAAATCATTGTCCTGCAGCATCAGTTCTTaGAATTCCACCAGCCAGTAC +
Preference number: 5 (lower is better)
Translates to: VYASLHLKLGNHDHKSLSCSISS*NSTSQY
Trigger: GTACTGGCTGGTGGAATTCAAAGAACTGATGCTGCA...GGACAATGATTTATGGTCGTGGTTTCCCAGTTTTAGATGTAAGGAAGCATACAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218549.3
CDS-3UTR CAA 90 bp GTTAATAAACACCGCATTCAGTACATATTGGGCAGGAAATGCAAAGCAAACAGACATTCTCCTGAGTCTTaGACAGCTGTCACGGTCAGA +
Preference number: 5 (lower is better)
Translates to: VNKHRIQYILGRKCKANRHSPES*TAVTVR
Trigger: TCTGACCGTGACAGCTGTCAAAGACTCAGGAGAATG...TCTGTTTGCTTTGCATTTCCTGCCCAATATGTACTGAATGCGGTGTTTATTAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp GTTAATAAACACCGCATTCAGTACATATTGGGCAGGAAATGCAAAGCAAACAGAGAGCACCTCCCTGCATaGAAGACTCCATCACAGATA +
Preference number: 5 (lower is better)
Translates to: VNKHRIQYILGRKCKANREHLPA*KTPSQI
Trigger: TATCTGTGATGGAGTCTTCAATGCAGGGAGGTGCTC...TCTGTTTGCTTTGCATTTCCTGCCCAATATGTACTGAATGCGGTGTTTATTAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp GGATATGTGAGAGAAGAAGCTCAGAATAGAACTCCTCTAGTAAAAACCAAACCAGAGCACCTCCCTGCATaGAAGACTCCATCACAGATA +
Preference number: 5 (lower is better)
Translates to: GYVREEAQNRTPLVKTKPEHLPA*KTPSQI
Trigger: TATCTGTGATGGAGTCTTCAATGCAGGGAGGTGCTC...TGGTTTGGTTTTTACTAGAGGAGTTCTATTCTGAGCTTCTTCTCTCACATATCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp ATTTCTGAGTGCCACCATCCTGCCATTTGGTCTGGATATGTGAGAGAAGAAGCTTTCCGTCTCTTTCTTTaGGGTGTTCCTGATCTTTTT +
Preference number: 5 (lower is better)
Translates to: ISECHHPAIWSGYVREEAFRLFL*GVPDLF
Trigger: AAAAAGATCAGGAACACCCAAAAGAAAGAGACGGAA...AGCTTCTTCTCTCACATATCCAGACCAAATGGCAGGATGGTGGCACTCAGAAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp GAGTGCCACCATCCTGCCATTTGGTCTGGATATGTGAGAGAAGAAGCTCAGAATTGTTTAAATGTGAATTaGGCCAGCTTTACTGTTGGA +
Preference number: 5 (lower is better)
Translates to: ECHHPAIWSGYVREEAQNCLNVN*ASFTVG
Trigger: TCCAACAGTAAAGCTGGCCAAATTCACATTTAAACA...ATTCTGAGCTTCTTCTCTCACATATCCAGACCAAATGGCAGGATGGTGGCACTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp CTTCTTCTGAGCCATATCCCAACCCAACGTTCTTGGTTTTATAAAAAGACAAACAAGTGTCCCACATCCTaGGTTTTGGGAATGTGTTCC +
Preference number: 5 (lower is better)
Translates to: LLLSHIPTQRSWFYKKTNKCPTS*VLGMCS
Trigger: GGAACACATTCCCAAAACCAAGGATGTGGGACACTT...GTTTGTCTTTTTATAAAACCAAGAACGTTGGGTTGGGATATGGCTCAGAAGAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp TCACACCAACCGCAATTAATTATTCAGCATTTAGGTGATGAAGATGAACCTGACAAGTGTCCCACATCCTaGGTTTTGGGAATGTGTTCC +
Preference number: 5 (lower is better)
Translates to: SHQPQLIIQHLGDEDEPDKCPTS*VLGMCS
Trigger: GGAACACATTCCCAAAACCAAGGATGTGGGACACTT...GTCAGGTTCATCTTCATCACCTAAATGCTGAATAATTAATTGCGGTTGGTGTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp AAGCATGCATACAGTTGTTCATTCACAACCTGGTCTGACCCTTCATTTCTGTTAAGGTCATCTCCAGATTaGCAACTGTCAACTAGGTCA +
Preference number: 5 (lower is better)
Translates to: KHAYSCSFTTWSDPSFLLRSSPD*QLSTRS
Trigger: TGACCTAGTTGACAGTTGCAAATCTGGAGATGACCT...TAACAGAAATGAAGGGTCAGACCAGGTTGTGAATGAACAACTGTATGCATGCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
CDS-3UTR CAA 90 bp CTTCTTCTGAGCCATATCCCAACCCAACGTTCTTGGTTTTATAAAAAGACAAACTGCAGCATCAGTTCTTaGAATTCCACCAGCCAGTAC +
Preference number: 5 (lower is better)
Translates to: LLLSHIPTQRSWFYKKTNCSISS*NSTSQY
Trigger: GTACTGGCTGGTGGAATTCAAAGAACTGATGCTGCA...GTTTGTCTTTTTATAAAACCAAGAACGTTGGGTTGGGATATGGCTCAGAAGAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp TTTCGGCAAGTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCCCAGGATGGTGGTCCTaGTGTTCAGCTTACAAACAA +
Preference number: 5 (lower is better)
Translates to: FRQVIPNVNKHRIQYILGPGWWS*CSAYKQ
Trigger: TTGTTTGTAAGCTGAACACAAGGACCACCATCCTGG...GCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGACTTGCCGAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp GTTAATAAACACCGCATTCAGTACATATTGGGCAGGAAATGCAAAGCAAACAGAACTCTGCCTTTGCATTaGGTAGTATCGAAGGAGGAC +
Preference number: 5 (lower is better)
Translates to: VNKHRIQYILGRKCKANRTLPLH*VVSKED
Trigger: GTCCTCCTTCGATACTACCAAATGCAAAGGCAGAGT...TCTGTTTGCTTTGCATTTCCTGCCCAATATGTACTGAATGCGGTGTTTATTAAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp TTCGGCAAGTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCAATACATCCCAAAAACTaGAGGACACAAGCTGGCCAA +
Preference number: 5 (lower is better)
Translates to: FGKSFQMLINTAFSTYWAIHPKN*RTQAGQ
Trigger: TTGGCCAGCTTGTGTCCTCAAGTTTTTGGGATGTAT...TGCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGACTTGCCGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp ACTCACATGGTAGAAACTAATTCTCCCACAAGCTGTCATCTAACTTGCATATATTGCAGCATCAGTTCTTaGAATTCCACCAGCCAGTAC +
Preference number: 5 (lower is better)
Translates to: THMVETNSPTSCHLTCIYCSISS*NSTSQY
Trigger: GTACTGGCTGGTGGAATTCAAAGAACTGATGCTGCA...ATATATGCAAGTTAGATGACAGCTTGTGGGAGAATTAGTTTCTACCATGTGAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
CDS-3UTR CAA 90 bp GTTAATAAACACCGCATTCAGTACATATTGGGCAGGAAATGCAAAGCAAACAGAGGAATCACTCTGCCTTaGCATTTGGTAGTATCGAAG +
Preference number: 5 (lower is better)
Translates to: VNKHRIQYILGRKCKANRGITLP*HLVVSK
Trigger: CTTCGATACTACCAAATGCAAAGGCAGAGTGATTCC...TCTGTTTGCTTTGCATTTCCTGCCCAATATGTACTGAATGCGGTGTTTATTAAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp TTCGGCAAGTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCACCAGCTTCTAATAATTaGCTTCTTTGCTGTGGCCCA +
Preference number: 5 (lower is better)
Translates to: FGKSFQMLINTAFSTYWAPASNN*LLCCGP
Trigger: TGGGCCACAGCAAAGAAGCAAATTATTAGAAGCTGG...TGCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGACTTGCCGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp GTTAATAAACACCGCATTCAGTACATATTGGGCAGGAAATGCAAAGCAAACAGACCAGCTTCTAATAATTaGCTTCTTTGCTGTGGCCCA +
Preference number: 5 (lower is better)
Translates to: VNKHRIQYILGRKCKANRPASNN*LLCCGP
Trigger: TGGGCCACAGCAAAGAAGCAAATTATTAGAAGCTGG...TCTGTTTGCTTTGCATTTCCTGCCCAATATGTACTGAATGCGGTGTTTATTAAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp GGATATGTGAGAGAAGAAGCTCAGAATAGAACTCCTCTAGTAAAAACCAAACCACCAGCTTCTAATAATTaGCTTCTTTGCTGTGGCCCA +
Preference number: 5 (lower is better)
Translates to: GYVREEAQNRTPLVKTKPPASNN*LLCCGP
Trigger: TGGGCCACAGCAAAGAAGCAAATTATTAGAAGCTGG...TGGTTTGGTTTTTACTAGAGGAGTTCTATTCTGAGCTTCTTCTCTCACATATCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp CGCTACATATACATTCTTCTTCTGAGCCATATCCCAACCCAACGTTCTTGGTTTTTGCTCATTATTCACTaGGACATAGTTGGCTTTCAA +
Preference number: 5 (lower is better)
Translates to: RYIYILLLSHIPTQRSWFLLIIH*DIVGFQ
Trigger: TTGAAAGCCAACTATGTCCAAGTGAATAATGAGCAA...AAACCAAGAACGTTGGGTTGGGATATGGCTCAGAAGAAGAATGTATATGTAGCG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp TTTCGGCAAGTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCGTCCTGTCATGTTCTTaGAGGCTGTTAAATTCGTCA +
Preference number: 5 (lower is better)
Translates to: FRQVIPNVNKHRIQYILGVLSCS*RLLNSS
Trigger: TGACGAATTTAACAGCCTCAAAGAACATGACAGGAC...GCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGACTTGCCGAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp GTGTATGCTTCCTTACATCTAAAACTGGGAAACCACGACCATAAATCATTGTCCTTGCTCATTATTCACTaGGACATAGTTGGCTTTCAA +
Preference number: 5 (lower is better)
Translates to: VYASLHLKLGNHDHKSLSLLIIH*DIVGFQ
Trigger: TTGAAAGCCAACTATGTCCAAGTGAATAATGAGCAA...GGACAATGATTTATGGTCGTGGTTTCCCAGTTTTAGATGTAAGGAAGCATACAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218549.3
CDS-3UTR CAA 90 bp TGCCAAGCCTACTATTTCATTCAATTCAATACCCAGGACTCACATGGTAGAAACTTGCTCATTATTCACTaGGACATAGTTGGCTTTCAA +
Preference number: 5 (lower is better)
Translates to: CQAYYFIQFNTQDSHGRNLLIIH*DIVGFQ
Trigger: TTGAAAGCCAACTATGTCCAAGTGAATAATGAGCAA...GTTTCTACCATGTGAGTCCTGGGTATTGAATTGAATGAAATAGTAGGCTTGGCA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219838.3
CDS-3UTR CAA 90 bp GTTAATAAACACCGCATTCAGTACATATTGGGCAGGAAATGCAAAGCAAACAGAAACACTTATGGTTTGTaGCTCCATTGCTTCATGGAT +
Preference number: 5 (lower is better)
Translates to: VNKHRIQYILGRKCKANRNTYGL*LHCFMD
Trigger: ATCCATGAAGCAATGGAGCAACAAACCATAAGTGTT...TCTGTTTGCTTTGCATTTCCTGCCCAATATGTACTGAATGCGGTGTTTATTAAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp TTCGGCAAGTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCATTCCGTCTCTTTCTTTaGGGTGTTCCTGATCTTTTT +
Preference number: 5 (lower is better)
Translates to: FGKSFQMLINTAFSTYWAFRLFL*GVPDLF
Trigger: AAAAAGATCAGGAACACCCAAAAGAAAGAGACGGAA...TGCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGACTTGCCGAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp GTTAATAAACACCGCATTCAGTACATATTGGGCAGGAAATGCAAAGCAAACAGATTCCGTCTCTTTCTTTaGGGTGTTCCTGATCTTTTT +
Preference number: 5 (lower is better)
Translates to: VNKHRIQYILGRKCKANRFRLFL*GVPDLF
Trigger: AAAAAGATCAGGAACACCCAAAAGAAAGAGACGGAA...TCTGTTTGCTTTGCATTTCCTGCCCAATATGTACTGAATGCGGTGTTTATTAAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp GGATATGTGAGAGAAGAAGCTCAGAATAGAACTCCTCTAGTAAAAACCAAACCATGTTTAAATGTGAATTaGGCCAGCTTTACTGTTGGA +
Preference number: 5 (lower is better)
Translates to: GYVREEAQNRTPLVKTKPCLNVN*ASFTVG
Trigger: TCCAACAGTAAAGCTGGCCAAATTCACATTTAAACA...TGGTTTGGTTTTTACTAGAGGAGTTCTATTCTGAGCTTCTTCTCTCACATATCC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp TTTCGGCAAGTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCTGTTTAAATGTGAATTaGGCCAGCTTTACTGTTGGA +
Preference number: 5 (lower is better)
Translates to: FRQVIPNVNKHRIQYILGCLNVN*ASFTVG
Trigger: TCCAACAGTAAAGCTGGCCAAATTCACATTTAAACA...GCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGACTTGCCGAAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp GGATATGTGAGAGAAGAAGCTCAGAATAGAACTCCTCTAGTAAAAACCAAACCATCTTCTTGTTCTTTGTaGGGGAATTTTAGAACTGTC +
Preference number: 5 (lower is better)
Translates to: GYVREEAQNRTPLVKTKPSSCSL*GNFRTV
Trigger: GACAGTTCTAAAATTCCCCAACAAAGAACAAGAAGA...TGGTTTGGTTTTTACTAGAGGAGTTCTATTCTGAGCTTCTTCTCTCACATATCC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS-3UTR CAA 90 bp TTTCGGCAAGTCATTCCAAATGTTAATAAACACCGCATTCAGTACATATTGGGCTCTTCTTGTTCTTTGTaGGGGAATTTTAGAACTGTC +
Preference number: 5 (lower is better)
Translates to: FRQVIPNVNKHRIQYILGSSCSL*GNFRTV
Trigger: GACAGTTCTAAAATTCCCCAACAAAGAACAAGAAGA...GCCCAATATGTACTGAATGCGGTGTTTATTAACATTTGGAATGACTTGCCGAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000237608.2
CDS GCA 72 bp TGCCTCAACTTTCCGGCCGCTGGGGCTTCTTCCGGGTaGGGACGCAGGCGGGCGCGCGCCAGGACGGACGCT +
Preference number: 6 (lower is better)
Translates to: CLNFPAAGASSG*GRRRARARTDA
Trigger: AGCGTCCGTCCTGGCGCGCGCCCGCCTGCGTCCGCACCCGGAAGAAGCCCCAGCGGCCGGAAAGTTGAGGCA
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075540.8
CDS GCA 72 bp CTCTCTGTGGGCTGCTGCAGCTGGAAAGTCTGCCTTTaGTGGCCGAGCACTGGAGCTGTGGTCGCAGGAGGG +
Preference number: 6 (lower is better)
Translates to: LSVGCCSWKVCL*WPSTGAVVAGG
Trigger: CCCTCCTGCGACCACAGCTCCAGTGCTCGGCCAGCAAAGGCAGACTTTCCAGCTGCAGCAGCCCACAGAGAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS CCA 72 bp TCTGTGGGCTGCTGCAGCTGGAAAGTCTGCCTTTGCTaGCCGAGCACTGGAGCTGTGGTCGCAGGAGGGCTG +
Preference number: 6 (lower is better)
Translates to: SVGCCSWKVCLC*PSTGAVVAGGL
Trigger: CAGCCCTCCTGCGACCACAGCTCCAGTGCTCGGCCAGCAAAGGCAGACTTTCCAGCTGCAGCAGCCCACAGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS CAA 72 bp TCTCTCTGTGGGCTGCTGCAGCTGGAAAGTCTGCCTTaGCTGGCCGAGCACTGGAGCTGTGGTCGCAGGAGG +
Preference number: 6 (lower is better)
Translates to: SLCGLLQLESLP*LAEHWSCGRRR
Trigger: CCTCCTGCGACCACAGCTCCAGTGCTCGGCCAGCAAAGGCAGACTTTCCAGCTGCAGCAGCCCACAGAGAGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS CAA 90 bp AAGATTCGCTCTCTCTGTGGGCTGCTGCAGCTGGAAAGTCTGCCTTaGCTGGCCGAGCACTGGAGCTGTGGTCGCAGGAGGGCTGTGGCA +
Preference number: 6 (lower is better)
Translates to: KIRSLCGLLQLESLP*LAEHWSCGRRRAVA
Trigger: TGCCACAGCCCTCCTGCGACCACAGCTCCAGTGCTCGGCCAGCAAAGGCAGACTTTCCAGCTGCAGCAGCCCACAGAGAGAGCGAATCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS GCA 72 bp AGGGAGAGGGTGGAAAGATTCGCTCTCTCTGTGGGCTaGTGCAGCTGGAAAGTCTGCCTTTGCTGGCCGAGC +
Preference number: 6 (lower is better)
Translates to: RERVERFALSVG*CSWKVCLCWPS
Trigger: GCTCGGCCAGCAAAGGCAGACTTTCCAGCTGCAGCAGCCCACAGAGAGAGCGAATCTTTCCACCCTCTCCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS CCA 72 bp GGGACAGAGGGACAGTGGGTGGCAGTGGTCGCACTCTaGTTGTGCTTCTGCACACATTCTGTGACCCCTCCT +
Preference number: 6 (lower is better)
Translates to: GTEGQWVAVVAL*LCFCTHSVTPP
Trigger: AGGAGGGGTCACAGAATGTGTGCAGAAGCACAACCAGAGTGCGACCACTGCCACCCACTGTCCCTCTGTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS GCA 72 bp CAGTGGGTGGCAGTGGTCGCACTCTGGTTGTGCTTCTaGACACATTCTGTGACCCCTCCTTCAGCAGCTTGG +
Preference number: 6 (lower is better)
Translates to: QWVAVVALWLCF*THSVTPPSAAW
Trigger: CCAAGCTGCTGAAGGAGGGGTCACAGAATGTGTGCAGAAGCACAACCAGAGTGCGACCACTGCCACCCACTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS GCA 72 bp GAGGGACAGTGGGTGGCAGTGGTCGCACTCTGGTTGTaGTTCTGCACACATTCTGTGACCCCTCCTTCAGCA +
Preference number: 6 (lower is better)
Translates to: EGQWVAVVALWL*FCTHSVTPPSA
Trigger: TGCTGAAGGAGGGGTCACAGAATGTGTGCAGAAGCACAACCAGAGTGCGACCACTGCCACCCACTGTCCCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS CAA 90 bp CAGCTACAGCTCTGTTCCTGCTGTGTTGAAGTCCTGAGCCTTGGCTaGTCCCTGGGATCATTTCTGCAGGAACCTGGAGCCACCTCCTCC +
Preference number: 6 (lower is better)
Translates to: QLQLCSCCVEVLSLG*SLGSFLQEPGATSS
Trigger: GGAGGAGGTGGCTCCAGGTTCCTGCAGAAATGATCCCAGGGACAAGCCAAGGCTCAGGACTTCAACACAGCAGGAACAGAGCTGTAGCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS CAA 90 bp CTTAAGAGTGGGCTCCCGAGGGCAATGTTCACAGACACAGACTCCTaGGGGTCATACTGGCCTTTGGGGTTAGTTGCTGCCAGGATGGTG +
Preference number: 6 (lower is better)
Translates to: LKSGLPRAMFTDTDS*GSYWPLGLVAARMV
Trigger: CACCATCCTGGCAGCAACTAACCCCAAAGGCCAGTATGACCCCAAGGAGTCTGTGTCTGTGAACATTGCCCTCGGGAGCCCACTCTTAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS GCA 72 bp TGTTGGTCTATTAAGCCCTGGACCAGGCGGGGAGTCTaGACCAGATCTCTCTGTGGAACTCCAGCTACAGCT +
Preference number: 6 (lower is better)
Translates to: CWSIKPWTRRGV*TRSLCGTPATA
Trigger: AGCTGTAGCTGGAGTTCCACAGAGAGATCTGGTGCAGACTCCCCGCCTGGTCCAGGGCTTAATAGACCAACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS GCA 72 bp TCTGGTGGCTGCCTTGAGAGCTCCTTTGTCTTTCCGTaGAGCTGGTCAGAGCATCTGTCTCCTGAGGTGGAT +
Preference number: 6 (lower is better)
Translates to: SGGCLESSFVFP*SWSEHLSPEVD
Trigger: ATCCACCTCAGGAGACAGATGCTCTGACCAGCTGCACGGAAAGACAAAGGAGCTCTCAAGGCAGCCACCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS CAA 90 bp CCTGTTCCCTCTCCTCTCTTGGTGGATTACTGTCTGGTGGCTGCCTaGAGAGCTCCTTTGTCTTTCCGTGCAGCTGGTCAGAGCATCTGT +
Preference number: 6 (lower is better)
Translates to: PVPSPLLVDYCLVAA*RAPLSFRAAGQSIC
Trigger: ACAGATGCTCTGACCAGCTGCACGGAAAGACAAAGGAGCTCTCAAGGCAGCCACCAGACAGTAATCCACCAAGAGAGGAGAGGGAACAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS TCA 72 bp TCCAGAGTCACGGCACTGCGGAACATCAGGCGAGCGTaGGCTTCTGCTAATCGGATCAAGCTTTCTAACAGG +
Preference number: 6 (lower is better)
Translates to: SRVTALRNIRRA*ASANRIKLSNR
Trigger: CCTGTTAGAAAGCTTGATCCGATTAGCAGAAGCTCACGCTCGCCTGATGTTCCGCAGTGCCGTGACTCTGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS TCA 72 bp CTCCTCTCTTGGTGGATTACTGTCTGGTGGCTGCCTTaGGAGCTCCTTTGTCTTTCCGTGCAGCTGGTCAGA +
Preference number: 6 (lower is better)
Translates to: LLSWWITVWWLP*ELLCLSVQLVR
Trigger: TCTGACCAGCTGCACGGAAAGACAAAGGAGCTCTCAAGGCAGCCACCAGACAGTAATCCACCAAGAGAGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS GCA 72 bp TGCTTCATGGATAACCCCTCCGTCTCAGGAAGGGACTaGAGAATTGCCAAGGCTGACCTTCGAAGTGCACTG +
Preference number: 6 (lower is better)
Translates to: CFMDNPSVSGRD*RIAKADLRSAL
Trigger: CAGTGCACTTCGAAGGTCAGCCTTGGCAATTCTGCAGTCCCTTCCTGAGACGGAGGGGTTATCCATGAAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000218549.3
ENSMUST00000219838.3
ENSMUST00000237608.2
CDS GCA 72 bp GATCTCTCTGTGGAACTCCAGCTACAGCTCTGTTCCTaGTGTGTTGAAGTCCTGAGCCTTGGCTTGTCCCTG +
Preference number: 6 (lower is better)
Translates to: DLSVELQLQLCS*CVEVLSLGLSL
Trigger: CAGGGACAAGCCAAGGCTCAGGACTTCAACACAGCAGGAACAGAGCTGTAGCTGGAGTTCCACAGAGAGATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS CCA 72 bp GCAATGTTCACAGACACAGACTCCTTGGGGTCATACTaGCCTTTGGGGTTAGTTGCTGCCAGGATGGTGGTC +
Preference number: 6 (lower is better)
Translates to: AMFTDTDSLGSY*PLGLVAARMVV
Trigger: GACCACCATCCTGGCAGCAACTAACCCCAAAGGCCAGTATGACCCCAAGGAGTCTGTGTCTGTGAACATTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS CCA 72 bp CTTCTGCTAATCGGATCAAGCTTTCTAACAGGCGGATaGTTGTCCGGGCTGCATTCCGGGAATCACTCTGCC +
Preference number: 6 (lower is better)
Translates to: LLLIGSSFLTGG*LSGLHSGNHSA
Trigger: GGCAGAGTGATTCCCGGAATGCAGCCCGGACAACCATCCGCCTGTTAGAAAGCTTGATCCGATTAGCAGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS CCA 72 bp TTCTGCACACATTCTGTGACCCCTCCTTCAGCAGCTTaGGGAGTCTTCGGGGCACAGAGTCTTCTTCATCAC +
Preference number: 6 (lower is better)
Translates to: FCTHSVTPPSAA*GVFGAQSLLHH
Trigger: GTGATGAAGAAGACTCTGTGCCCCGAAGACTCCCCAAGCTGCTGAAGGAGGGGTCACAGAATGTGTGCAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS CAA 72 bp TTCACAGACACAGACTCCTTGGGGTCATACTGGCCTTaGGGGTTAGTTGCTGCCAGGATGGTGGTCCTTGTG +
Preference number: 6 (lower is better)
Translates to: FTDTDSLGSYWP*GLVAARMVVLV
Trigger: CACAAGGACCACCATCCTGGCAGCAACTAACCCCAAAGGCCAGTATGACCCCAAGGAGTCTGTGTCTGTGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS CAA 72 bp GTGGATTACTGTCTGGTGGCTGCCTTGAGAGCTCCTTaGTCTTTCCGTGCAGCTGGTCAGAGCATCTGTCTC +
Preference number: 6 (lower is better)
Translates to: VDYCLVAALRAP*SFRAAGQSICL
Trigger: GAGACAGATGCTCTGACCAGCTGCACGGAAAGACAAAGGAGCTCTCAAGGCAGCCACCAGACAGTAATCCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS CAA 72 bp TCTCCTCTCTTGGTGGATTACTGTCTGGTGGCTGCCTaGAGAGCTCCTTTGTCTTTCCGTGCAGCTGGTCAG +
Preference number: 6 (lower is better)
Translates to: SPLLVDYCLVAA*RAPLSFRAAGQ
Trigger: CTGACCAGCTGCACGGAAAGACAAAGGAGCTCTCAAGGCAGCCACCAGACAGTAATCCACCAAGAGAGGAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS TCA 72 bp CACAGCTGGCTAAACTTGGACATGACGATGGCCGACTaGAGGTGTAATACTGCTCGAAGTCTGCCTCCACCA +
Preference number: 6 (lower is better)
Translates to: HSWLNLDMTMAD*RCNTARSLPPP
Trigger: TGGTGGAGGCAGACTTCGAGCAGTATTACACCTTCAGTCGGCCATCGTCATGTCCAAGTTTAGCCAGCTGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000218549.3
ENSMUST00000219838.3
ENSMUST00000237608.2
CDS TCA 72 bp TGTGGAACTCCAGCTACAGCTCTGTTCCTGCTGTGTTaGAGTCCTGAGCCTTGGCTTGTCCCTGGGATCATT +
Preference number: 6 (lower is better)
Translates to: CGTPATALFLLC*SPEPWLVPGII
Trigger: AATGATCCCAGGGACAAGCCAAGGCTCAGGACTTCAACACAGCAGGAACAGAGCTGTAGCTGGAGTTCCACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS GCA 72 bp AGACTCCTTGGGGTCATACTGGCCTTTGGGGTTAGTTaGTGCCAGGATGGTGGTCCTTGTGTTCAGCTTACA +
Preference number: 6 (lower is better)
Translates to: RLLGVILAFGVS*CQDGGPCVQLT
Trigger: TGTAAGCTGAACACAAGGACCACCATCCTGGCAGCAACTAACCCCAAAGGCCAGTATGACCCCAAGGAGTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS GCA 72 bp TCTTCGGGGCACAGAGTCTTCTTCATCACCCCGTCCTaGTTCAGATACAACCACTGCCTGACTTGCCTTTGT +
Preference number: 6 (lower is better)
Translates to: SSGHRVFFITPS*FRYNHCLTCLC
Trigger: ACAAAGGCAAGTCAGGCAGTGGTTGTATCTGAAGCAGGACGGGGTGATGAAGAAGACTCTGTGCCCCGAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS CAA 72 bp CTGCTAATCGGATCAAGCTTTCTAACAGGCGGATGGTaGTCCGGGCTGCATTCCGGGAATCACTCTGCCTTT +
Preference number: 6 (lower is better)
Translates to: LLIGSSFLTGGW*SGLHSGNHSAF
Trigger: AAAGGCAGAGTGATTCCCGGAATGCAGCCCGGACAACCATCCGCCTGTTAGAAAGCTTGATCCGATTAGCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS CAA 72 bp CTGCTGTCCTTCCTTTCAGGAGGGAGGGATTCCGATTaGGATTCTGATGGGGAAGTGAAGGAGAAGCTTGCC +
Preference number: 6 (lower is better)
Translates to: LLSFLSGGRDSD*DSDGEVKEKLA
Trigger: GGCAAGCTTCTCCTTCACTTCCCCATCAGAATCCAAATCGGAATCCCTCCCTCCTGAAAGGAAGGACAGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS CAA 90 bp AGGGCAATGTTCACAGACACAGACTCCTTGGGGTCATACTGGCCTTaGGGGTTAGTTGCTGCCAGGATGGTGGTCCTTGTGTTCAGCTTA +
Preference number: 6 (lower is better)
Translates to: RAMFTDTDSLGSYWP*GLVAARMVVLVFSL
Trigger: TAAGCTGAACACAAGGACCACCATCCTGGCAGCAACTAACCCCAAAGGCCAGTATGACCCCAAGGAGTCTGTGTCTGTGAACATTGCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS CAA 90 bp CGTGAGCTTCTGCTAATCGGATCAAGCTTTCTAACAGGCGGATGGTaGTCCGGGCTGCATTCCGGGAATCACTCTGCCTTTGCATTTGGT +
Preference number: 6 (lower is better)
Translates to: RELLLIGSSFLTGGW*SGLHSGNHSAFAFG
Trigger: ACCAAATGCAAAGGCAGAGTGATTCCCGGAATGCAGCCCGGACAACCATCCGCCTGTTAGAAAGCTTGATCCGATTAGCAGAAGCTCACG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS GCA 72 bp TGGAGAGCATTCACACCTCCTAGCAGAGCACCTCCCTaGATTGAAGACTCCATCACAGATACAGCTGTAACG +
Preference number: 6 (lower is better)
Translates to: WRAFTPPSRAPP*IEDSITDTAVT
Trigger: CGTTACAGCTGTATCTGTGATGGAGTCTTCAATGCAGGGAGGTGCTCTGCTAGGAGGTGTGAATGCTCTCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS GCA 72 bp AGCTTGCCAGTCTGGCTATGGTGCCAGCATGAACCTTaGTGCTTTTATTACCGCAGGAAACCCCTTCCTTTC +
Preference number: 6 (lower is better)
Translates to: SLPVWLWCQHEP*CFYYRRKPLPF
Trigger: GAAAGGAAGGGGTTTCCTGCGGTAATAAAAGCAGCAAGGTTCATGCTGGCACCATAGCCAGACTGGCAAGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS CAA 72 bp TGGATAACCCCTCCGTCTCAGGAAGGGACTGCAGAATaGCCAAGGCTGACCTTCGAAGTGCACTGTCAAAAA +
Preference number: 6 (lower is better)
Translates to: WITPPSQEGTAE*PRLTFEVHCQK
Trigger: TTTTTGACAGTGCACTTCGAAGGTCAGCCTTGGCAATTCTGCAGTCCCTTCCTGAGACGGAGGGGTTATCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000218549.3
ENSMUST00000219838.3
ENSMUST00000237608.2
CDS CAA 72 bp CCGGGCTGCATTCCGGGAATCACTCTGCCTTTGCATTaGGTAGTATCGAAGGAGGACTTGATTGCTCACTTC +
Preference number: 6 (lower is better)
Translates to: PGCIPGITLPLH*VVSKEDLIAHF
Trigger: GAAGTGAGCAATCAAGTCCTCCTTCGATACTACCAAATGCAAAGGCAGAGTGATTCCCGGAATGCAGCCCGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS CAA 90 bp CCGGGAATCACTCTGCCTTTGCATTTGGTAGTATCGAAGGAGGACTaGATTGCTCACTTCAGACAGTGTGGGGTGGAGATTCCGAATGAG +
Preference number: 6 (lower is better)
Translates to: PGITLPLHLVVSKED*IAHFRQCGVEIPNE
Trigger: CTCATTCGGAATCTCCACCCCACACTGTCTGAAGTGAGCAATCAAGTCCTCCTTCGATACTACCAAATGCAAAGGCAGAGTGATTCCCGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS CAA 90 bp GATGGTTGTCCGGGCTGCATTCCGGGAATCACTCTGCCTTTGCATTaGGTAGTATCGAAGGAGGACTTGATTGCTCACTTCAGACAGTGT +
Preference number: 6 (lower is better)
Translates to: DGCPGCIPGITLPLH*VVSKEDLIAHFRQC
Trigger: ACACTGTCTGAAGTGAGCAATCAAGTCCTCCTTCGATACTACCAAATGCAAAGGCAGAGTGATTCCCGGAATGCAGCCCGGACAACCATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS TCA 72 bp AGACCTTCACCAGACTCGTTCGGATCACTGTCCCAGTaGCAGATAAGAAGTGTCCCACATCCTTGGTTTTGG +
Preference number: 6 (lower is better)
Translates to: RPSPDSFGSLSQ*QIRSVPHPWFW
Trigger: CCAAAACCAAGGATGTGGGACACTTCTTATCTGTCACTGGGACAGTGATCCGAACGAGTCTGGTGAAGGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000218549.3
ENSMUST00000219838.3
ENSMUST00000237608.2
CDS TCA 72 bp GGAGTCTCCATACCTTCAGGTTCAGGCTCTTCCACCTaGGCAGATTTCCGTCTCTTTCTTTTGGGTGTTCCT +
Preference number: 6 (lower is better)
Translates to: GVSIPSGSGSST*ADFRLFLLGVP
Trigger: AGGAACACCCAAAAGAAAGAGACGGAAATCTGCTCAGGTGGAAGAGCCTGAACCTGAAGGTATGGAGACTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS GCA 72 bp TTGCCAGTCTGGCTATGGTGCCAGCATGAACCTTGCTaGTTTTATTACCGCAGGAAACCCCTTCCTTTCTGT +
Preference number: 6 (lower is better)
Translates to: LPVWLWCQHEPC*FYYRRKPLPFC
Trigger: ACAGAAAGGAAGGGGTTTCCTGCGGTAATAAAAGCAGCAAGGTTCATGCTGGCACCATAGCCAGACTGGCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS CCA 72 bp GCAAACCTGATATCCTGGCATGAAGATTCTGCTTCATaGATAACCCCTCCGTCTCAGGAAGGGACTGCAGAA +
Preference number: 6 (lower is better)
Translates to: ANLISWHEDSAS*ITPPSQEGTAE
Trigger: TTCTGCAGTCCCTTCCTGAGACGGAGGGGTTATCCATGAAGCAGAATCTTCATGCCAGGATATCAGGTTTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000218549.3
ENSMUST00000219838.3
ENSMUST00000237608.2
CDS CAA 72 bp TTCACAGCGTACATCTCGCTGAAAGGGTTTCCACCGTaGCATTACAACCCCATAGATGGTGAGGTCATCTCC +
Preference number: 6 (lower is better)
Translates to: FTAYISLKGFPP*HYNPIDGEVIS
Trigger: GGAGATGACCTCACCATCTATGGGGTTGTAATGCAACGGTGGAAACCCTTTCAGCGAGATGTACGCTGTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000218549.3
ENSMUST00000219838.3
ENSMUST00000237608.2
CDS CAA 72 bp AAAGCCCCAGCCTCTAGATTCCATTCTCCTGAGTCTTaGACAGCTGTCACGGTCAGACCTGCACTAGTAGAT +
Preference number: 6 (lower is better)
Translates to: KAPASRFHSPES*TAVTVRPALVD
Trigger: ATCTACTAGTGCAGGTCTGACCGTGACAGCTGTCAAAGACTCAGGAGAATGGAATCTAGAGGCTGGGGCTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS CAA 90 bp TCTGCTTCATGGATAACCCCTCCGTCTCAGGAAGGGACTGCAGAATaGCCAAGGCTGACCTTCGAAGTGCACTGTCAAAAACTGTTAGTA +
Preference number: 6 (lower is better)
Translates to: SASWITPPSQEGTAE*PRLTFEVHCQKLLV
Trigger: TACTAACAGTTTTTGACAGTGCACTTCGAAGGTCAGCCTTGGCAATTCTGCAGTCCCTTCCTGAGACGGAGGGGTTATCCATGAAGCAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000218549.3
ENSMUST00000219838.3
ENSMUST00000237608.2
CDS TCA 72 bp AGTGTCCCACATCCTTGGTTTTGGGAATGTGTTCCCTaGCCAGTTCTGGACAAACAGGCAAACCTGATATCC +
Preference number: 6 (lower is better)
Translates to: SVPHPWFWECVP*PVLDKQANLIS
Trigger: GGATATCAGGTTTGCCTGTTTGTCCAGAACTGGTCAGGGAACACATTCCCAAAACCAAGGATGTGGGACACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000218549.3
ENSMUST00000219838.3
ENSMUST00000237608.2
CDS GCA 72 bp CGATGGCCGACTGAAGGTGTAATACTGCTCGAAGTCTaGCTCCACCATGAACACATGCTTGCATTTGTTACA +
Preference number: 6 (lower is better)
Translates to: RWPTEGVILLEV*LHHEHMLAFVT
Trigger: TGTAACAAATGCAAGCATGTGTTCATGGTGGAGGCAGACTTCGAGCAGTATTACACCTTCAGTCGGCCATCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000218549.3
ENSMUST00000219838.3
ENSMUST00000237608.2
CDS GCA 72 bp GCCTTTGCATTTGGTAGTATCGAAGGAGGACTTGATTaGTCACTTCAGACAGTGTGGGGTGGAGATTCCGAA +
Preference number: 6 (lower is better)
Translates to: AFAFGSIEGGLD*SLQTVWGGDSE
Trigger: TTCGGAATCTCCACCCCACACTGTCTGAAGTGAGCAATCAAGTCCTCCTTCGATACTACCAAATGCAAAGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075540.8
ENSMUST00000237608.2
CDS CAA 72 bp GCTCCTGATGATGGAAGATGTCCAGCTTCTAATAATTaGCTTCTTTGCTGTGGCCCATGCTTCTCCTTGCCC +
Preference number: 6 (lower is better)
Translates to: APDDGRCPASNN*LLCCGPCFSLP
Trigger: GGGCAAGGAGAAGCATGGGCCACAGCAAAGAAGCAAATTATTAGAAGCTGGACATCTTCCATCATCAGGAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS CAA 90 bp ATCACTGTCCCAGTGACAGATAAGAAGTGTCCCACATCCTTGGTTTaGGGAATGTGTTCCCTGACCAGTTCTGGACAAACAGGCAAACCT +
Preference number: 6 (lower is better)
Translates to: ITVPVTDKKCPTSLV*GMCSLTSSGQTGKP
Trigger: AGGTTTGCCTGTTTGTCCAGAACTGGTCAGGGAACACATTCCCAAAACCAAGGATGTGGGACACTTCTTATCTGTCACTGGGACAGTGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000218549.3
ENSMUST00000219838.3
ENSMUST00000237608.2
CDS CAA 90 bp CCTTCGGGGGAGTGGGTCAGTTTTGTCTTCTGTTTAAATGTGAATTaGGCCAGCTTTACTGTTGGAGTCTCCATACCTTCAGGTTCAGGC +
Preference number: 6 (lower is better)
Translates to: PSGEWVSFVFCLNVN*ASFTVGVSIPSGSG
Trigger: GCCTGAACCTGAAGGTATGGAGACTCCAACAGTAAAGCTGGCCAAATTCACATTTAAACAGAAGACAAAACTGACCCACTCCCCCGAAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS CAA 90 bp AATCTCAACTTCACAGCGTACATCTCGCTGAAAGGGTTTCCACCGTaGCATTACAACCCCATAGATGGTGAGGTCATCTCCAGATTTGCA +
Preference number: 6 (lower is better)
Translates to: NLNFTAYISLKGFPP*HYNPIDGEVISRFA
Trigger: TGCAAATCTGGAGATGACCTCACCATCTATGGGGTTGTAATGCAACGGTGGAAACCCTTTCAGCGAGATGTACGCTGTGAAGTTGAGATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219838.3
ENSMUST00000237608.2
CDS TCA 72 bp AGGGTTTCCACCGTTGCATTACAACCCCATAGATGGTaGGGTCATCTCCAGATTTGCAACTGTCAACTAGGT +
Preference number: 6 (lower is better)
Translates to: RVSTVALQPHRW*GHLQICNCQLG
Trigger: ACCTAGTTGACAGTTGCAAATCTGGAGATGACCTCACCATCTATGGGGTTGTAATGCAACGGTGGAAACCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075540.8
ENSMUST00000219838.3
ENSMUST00000237608.2
CDS GCA 72 bp CTCCTGATGATGGAAGATGTCCAGCTTCTAATAATTTaGTTCTTTGCTGTGGCCCATGCTTCTCCTTGCCCT +
Preference number: 6 (lower is better)
Translates to: LLMMEDVQLLII*FFAVAHASPCP
Trigger: AGGGCAAGGAGAAGCATGGGCCACAGCAAAGAAGCAAATTATTAGAAGCTGGACATCTTCCATCATCAGGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS CAA 72 bp CCAGTGACAGATAAGAAGTGTCCCACATCCTTGGTTTaGGGAATGTGTTCCCTGACCAGTTCTGGACAAACA +
Preference number: 6 (lower is better)
Translates to: PVTDKKCPTSLV*GMCSLTSSGQT
Trigger: TGTTTGTCCAGAACTGGTCAGGGAACACATTCCCAAAACCAAGGATGTGGGACACTTCTTATCTGTCACTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000218549.3
ENSMUST00000219838.3
ENSMUST00000237608.2
CDS CAA 72 bp AAACCGTCACCTCTGCCATCTCTGTTCTCAGCTGAGTaGTTACAACTTGTTGGTCTATTAAGCCCTGGACCA +
Preference number: 6 (lower is better)
Translates to: KPSPLPSLFSAE*LQLVGLLSPGP
Trigger: TGGTCCAGGGCTTAATAGACCAACAAGTTGTAACAACTCAGCTGAGAACAGAGATGGCAGAGGTGACGGTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS CAA 90 bp AGTGTCCTCATCCATGACCATCCCCGAGGATTGCTCATTATTCACTaGGACATAGTTGGCTTTCAAGACAATCTCAACTTCACAGCGTAC +
Preference number: 6 (lower is better)
Translates to: SVLIHDHPRGLLIIH*DIVGFQDNLNFTAY
Trigger: GTACGCTGTGAAGTTGAGATTGTCTTGAAAGCCAACTATGTCCAAGTGAATAATGAGCAATCCTCGGGGATGGTCATGGATGAGGACACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000218549.3
ENSMUST00000219838.3
ENSMUST00000237608.2
CDS TCA 72 bp GCCACAGCAAGCTTCACTAGATACATCCCAAAAACTTaGGGACACAAGCTGGCCAATATTTCATTCCTCCCT +
Preference number: 6 (lower is better)
Translates to: ATASFTRYIPKT*GHKLANISFLP
Trigger: AGGGAGGAATGAAATATTGGCCAGCTTGTGTCCTCAAGTTTTTGGGATGTATCTAGTGAAGCTTGCTGTGGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000218549.3
ENSMUST00000219838.3
ENSMUST00000237608.2
CDS CCA 72 bp TCACTAGATACATCCCAAAAACTTGAGGACACAAGCTaGCCAATATTTCATTCCTCCCTGCAAAGGGGTCAC +
Preference number: 6 (lower is better)
Translates to: SLDTSQKLEDTS*PIFHSSLQRGH
Trigger: GTGACCCCTTTGCAGGGAGGAATGAAATATTGGCCAGCTTGTGTCCTCAAGTTTTTGGGATGTATCTAGTGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000218549.3
ENSMUST00000219838.3
ENSMUST00000237608.2
CDS CCA 72 bp CTTCTGTTTAAATGTGAATTTGGCCAGCTTTACTGTTaGAGTCTCCATACCTTCAGGTTCAGGCTCTTCCAC +
Preference number: 6 (lower is better)
Translates to: LLFKCEFGQLYC*SLHTFRFRLFH
Trigger: GTGGAAGAGCCTGAACCTGAAGGTATGGAGACTCCAACAGTAAAGCTGGCCAAATTCACATTTAAACAGAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2
CDS TCA 72 bp TTTCAGGATCAGAAGAATATCGTTCTTATGGTACTCTaGAACATAGGACTCAAACACCTGACCCACCAGGGT +
Preference number: 6 (lower is better)
Translates to: FQDQKNIVLMVL*NIGLKHLTHQG
Trigger: ACCCTGGTGGGTCAGGTGTTTGAGTCCTATGTTTCAGAGTACCATAAGAACGATATTCTTCTGATCCTGAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000218549.3
ENSMUST00000219838.3
ENSMUST00000237608.2
CDS CAA 72 bp ATCCATGACCATCCCCGAGGATTGCTCATTATTCACTaGGACATAGTTGGCTTTCAAGACAATCTCAACTTC +
Preference number: 6 (lower is better)
Translates to: IHDHPRGLLIIH*DIVGFQDNLNF
Trigger: GAAGTTGAGATTGTCTTGAAAGCCAACTATGTCCAAGTGAATAATGAGCAATCCTCGGGGATGGTCATGGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000218549.3
ENSMUST00000219838.3
ENSMUST00000237608.2
CDS TCA 72 bp TTGCTTCTTTGCTGTGGCCCATGCTTCTCCTTGCCCTaGGATTTATTGTTGGAGATTTTCAAATTCACATTT +
Preference number: 6 (lower is better)
Translates to: LLLCCGPCFSLP*DLLLEIFKFTF
Trigger: AAATGTGAATTTGAAAATCTCCAACAATAAATCTCAGGGCAAGGAGAAGCATGGGCCACAGCAAAGAAGCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075540.8
ENSMUST00000219547.2
ENSMUST00000220007.2
ENSMUST00000237608.2