RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MCM10 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026669

Ensembl transcript IDs: ENSMUST00000027980.8, ENSMUST00000102985.8

Found 297 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AGCGCCTTCAGCCCACACAGAGCAGAGACAAAGCTGGATGCCACCTaGGGCATGCAATCTTTGGCTCTAAAGCCTCAACCGTGTATTTCC +
Preference number: 1 (lower is better)
Translates to: SAFSPHRAETKLDAT*GMQSLALKPQPCIS
Trigger: GGAAATACACGGTTGAGGCTTTAGAGCCAAAGATTGCATGCCCCAGGTGGCATCCAGCTTTGTCTCTGCTCTGTGTGGGCTGAAGGCGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102985.8
3UTR TCA 90 bp GACATTACAGACAAGCAGCCTGGGCTTCATGTTCCACATAAGGACTaGGCACGGAAGTGGGGAGAGACCCATGCCATGTTAGCTCTCTTG +
Preference number: 1 (lower is better)
Translates to: DITDKQPGLHVPHKD*ARKWGETHAMLALL
Trigger: CAAGAGAGCTAACATGGCATGGGTCTCTCCCCACTTCCGTGCTCAGTCCTTATGTGGAACATGAAGCCCAGGCTGCTTGTCTGTAATGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
3UTR CCA 90 bp CCCGTCAGAGAAAAAGCTGCAATCACAGTCAACAGAAGGAAACCCTaGTACCCAGTGTCAGTAGATCCAGACTACACAGAGGCAGCGCTA +
Preference number: 1 (lower is better)
Translates to: PVREKAAITVNRRKP*YPVSVDPDYTEAAL
Trigger: TAGCGCTGCCTCTGTGTAGTCTGGATCTACTGACACTGGGTACCAGGGTTTCCTTCTGTTGACTGTGATTGCAGCTTTTTCTCTGACGGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
3UTR CCA 90 bp CACACCTGTAGGCCTACCCAGAGTCCTGGGTTCTGTCTGTGTAGCTaGTTTCTGAGTCACGTTTCACAGCCTCTCAAGTTGTACATTTGC +
Preference number: 1 (lower is better)
Translates to: HTCRPTQSPGFCLCS*FLSHVSQPLKLYIC
Trigger: GCAAATGTACAACTTGAGAGGCTGTGAAACGTGACTCAGAAACCAGCTACACAGACAGAACCCAGGACTCTGGGTAGGCCTACAGGTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102985.8
3UTR TCA 90 bp TTTCAAGGCCCATGGGTAGGTAGTTCTCTCCCCTCTCCTCACCCCTaGATATTCTGGGAAACCATACACACACAGACACACACACACATG +
Preference number: 1 (lower is better)
Translates to: FQGPWVGSSLPSPHP*IFWETIHTQTHTHM
Trigger: CATGTGTGTGTGTGTCTGTGTGTGTATGGTTTCCCAGAATATTCAGGGGTGAGGAGAGGGGAGAGAACTACCTACCCATGGGCCTTGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102985.8
3UTR TCA 90 bp CCATGCCATGTTAGCTCTCTTGTCTCTCGTGCCCACGTTAACACCTaGAGGAGACACAGAGGCAAAGTTCTTGAGTCACCTTTCAGTTCT +
Preference number: 1 (lower is better)
Translates to: PCHVSSLVSRAHVNT*RRHRGKVLESPFSS
Trigger: AGAACTGAAAGGTGACTCAAGAACTTTGCCTCTGTGTCTCCTTCAGGTGTTAACGTGGGCACGAGAGACAAGAGAGCTAACATGGCATGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
3UTR CCA 90 bp TTCCCATATGCACATGAGTGTCAAATATGGTGTCAGGCCAGCACATaGAGGAAAGCGGGTAGGCACCATGGTTATCAAGCACTTCTTTCT +
Preference number: 1 (lower is better)
Translates to: FPYAHECQIWCQAST*RKAGRHHGYQALLS
Trigger: AGAAAGAAGTGCTTGATAACCATGGTGCCTACCCGCTTTCCTCCATGTGCTGGCCTGACACCATATTTGACACTCATGTGCATATGGGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
3UTR TCA 90 bp GAAACTTTTCTCCATACGAAGGAACTGAGTCACAAACTGGCTTGCTaGCTTCCCGTCAGAGAAAAAGCTGCAATCACAGTCAACAGAAGG +
Preference number: 1 (lower is better)
Translates to: ETFLHTKELSHKLAC*LPVREKAAITVNRR
Trigger: CCTTCTGTTGACTGTGATTGCAGCTTTTTCTCTGACGGGAAGTCAGCAAGCCAGTTTGTGACTCAGTTCCTTCGTATGGAGAAAAGTTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
3UTR-3UTR TCA 90 bp GGGAGAGACCCATGCCATGTTAGCTCTCTTGTCTCTCGTGCCCACGTTAACACCCAGAGGCAAAGTTCTTaGGTCACCTTTCAGTTCTGG +
Preference number: 2 (lower is better)
Translates to: GRDPCHVSSLVSRAHVNTQRQSS*VTFQFW
Trigger: CCAGAACTGAAAGGTGACTCAAGAACTTTGCCTCTG...GGTGTTAACGTGGGCACGAGAGACAAGAGAGCTAACATGGCATGGGTCTCTCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
3UTR-3UTR TCA 90 bp CTGGGCTTCATGTTCCACATAAGGACTGAGCACGGAAGTGGGGAGAGACCCATGCAGAGGCAAAGTTCTTaGGTCACCTTTCAGTTCTGG +
Preference number: 2 (lower is better)
Translates to: LGFMFHIRTEHGSGERPMQRQSS*VTFQFW
Trigger: CCAGAACTGAAAGGTGACTCAAGAACTTTGCCTCTG...CATGGGTCTCTCCCCACTTCCGTGCTCAGTCCTTATGTGGAACATGAAGCCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
3UTR-3UTR TCA 90 bp GACTTCCCGTCAGAGAAAAAGCTGCAATCACAGTCAACAGAAGGAAACCCTGGTGCCCACGTTAACACCTaGAGGAGACACAGAGGCAAA +
Preference number: 2 (lower is better)
Translates to: DFPSEKKLQSQSTEGNPGAHVNT*RRHRGK
Trigger: TTTGCCTCTGTGTCTCCTTCAGGTGTTAACGTGGGC...ACCAGGGTTTCCTTCTGTTGACTGTGATTGCAGCTTTTTCTCTGACGGGAAGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
3UTR-3UTR GCA 90 bp CACACAATAGTAAGCACACCTGTAGGCCTACCCAGAGTCCTGGGTTCTGTCTGTACAGAGCCAATCTCTTaGTTTTCAGAGCCACAGGAG +
Preference number: 2 (lower is better)
Translates to: HTIVSTPVGLPRVLGSVCTEPIS*FSEPQE
Trigger: CTCCTGTGGCTCTGAAAAGCAAGAGATTGGCTCTGT...ACAGACAGAACCCAGGACTCTGGGTAGGCCTACAGGTGTGCTTACTATTGTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102985.8
3UTR-3UTR TCA 90 bp CTGGGCTTCATGTTCCACATAAGGACTGAGCACGGAAGTGGGGAGAGACCCATGTTTCCCATATGCACATaGGTGTCAAATATGGTGTCA +
Preference number: 2 (lower is better)
Translates to: LGFMFHIRTEHGSGERPMFPICT*VSNMVS
Trigger: TGACACCATATTTGACACTCATGTGCATATGGGAAA...CATGGGTCTCTCCCCACTTCCGTGCTCAGTCCTTATGTGGAACATGAAGCCCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
3UTR CAA 90 bp CAGAGAAACTTTTCTCCATACGAAGGAACTGAGTCACAAACTGGCTaGCTGACTTCCCGTCAGAGAAAAAGCTGCAATCACAGTCAACAG +
Preference number: 2 (lower is better)
Translates to: QRNFSPYEGTESQTG*LTSRQRKSCNHSQQ
Trigger: CTGTTGACTGTGATTGCAGCTTTTTCTCTGACGGGAAGTCAGCAAGCCAGTTTGTGACTCAGTTCCTTCGTATGGAGAAAAGTTTCTCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
3UTR-3UTR TCA 90 bp GGGTGGAGAGAACCACCAGTGAGCCTTACTATTTTCTTTATTGAGTTTAGAAACTTTCCCATATGCACATaGGTGTCAAATATGGTGTCA +
Preference number: 2 (lower is better)
Translates to: GWREPPVSLTIFFIEFRNFPICT*VSNMVS
Trigger: TGACACCATATTTGACACTCATGTGCATATGGGAAA...GTTTCTAAACTCAATAAAGAAAATAGTAAGGCTCACTGGTGGTTCTCTCCACCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102985.8
3UTR-3UTR GCA 90 bp TGGAGAGAACCACCAGTGAGCCTTACTATTTTCTTTATTGAGTTTAGAAACCAACGTCAGAGAAAAAGCTaGAATCACAGTCAACAGAAG +
Preference number: 2 (lower is better)
Translates to: WREPPVSLTIFFIEFRNQRQRKS*NHSQQK
Trigger: CTTCTGTTGACTGTGATTGCAGCTTTTTCTCTGACG...TTGGTTTCTAAACTCAATAAAGAAAATAGTAAGGCTCACTGGTGGTTCTCTCCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102985.8
3UTR GCA 72 bp ATCTCCCACCGGCGGCCATCTGCTGTTCCTGATCCCTaGATGTGTGCTGCGGACTTCAGGTACATCACTCTC +
Preference number: 3 (lower is better)
Translates to: ISHRRPSAVPDP*MCAADFRYITL
Trigger: GAGAGTGATGTACCTGAAGTCCGCAGCACACATGCAGGGATCAGGAACAGCAGATGGCCGCCGGTGGGAGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102985.8
3UTR GCA 72 bp CGCCTTCAGCCCACACAGAGCAGAGACAAAGCTGGATaGCACCTGGGGCATGCAATCTTTGGCTCTAAAGCC +
Preference number: 3 (lower is better)
Translates to: RLQPTQSRDKAG*HLGHAIFGSKA
Trigger: GGCTTTAGAGCCAAAGATTGCATGCCCCAGGTGGCATCCAGCTTTGTCTCTGCTCTGTGTGGGCTGAAGGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102985.8
3UTR CCA 72 bp AGCCCACACAGAGCAGAGACAAAGCTGGATGCCACCTaGGGCATGCAATCTTTGGCTCTAAAGCCTCAACCG +
Preference number: 3 (lower is better)
Translates to: SPHRAETKLDAT*GMQSLALKPQP
Trigger: CGGTTGAGGCTTTAGAGCCAAAGATTGCATGCCCCAGGTGGCATCCAGCTTTGTCTCTGCTCTGTGTGGGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102985.8
3UTR TCA 72 bp GGAAAAGCCGCAGTGCCCCGGTTTCCCATATGCACATaGGTGTCAAATATGGTGTCAGGCCAGCACATGGAG +
Preference number: 3 (lower is better)
Translates to: GKAAVPRFPICT*VSNMVSGQHME
Trigger: CTCCATGTGCTGGCCTGACACCATATTTGACACTCATGTGCATATGGGAAACCGGGGCACTGCGGCTTTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
3UTR TCA 72 bp GACAAGCAGCCTGGGCTTCATGTTCCACATAAGGACTaGGCACGGAAGTGGGGAGAGACCCATGCCATGTTA +
Preference number: 3 (lower is better)
Translates to: DKQPGLHVPHKD*ARKWGETHAML
Trigger: TAACATGGCATGGGTCTCTCCCCACTTCCGTGCTCAGTCCTTATGTGGAACATGAAGCCCAGGCTGCTTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
3UTR CCA 72 bp AGGCCTACCCAGAGTCCTGGGTTCTGTCTGTGTAGCTaGTTTCTGAGTCACGTTTCACAGCCTCTCAAGTTG +
Preference number: 3 (lower is better)
Translates to: RPTQSPGFCLCS*FLSHVSQPLKL
Trigger: CAACTTGAGAGGCTGTGAAACGTGACTCAGAAACCAGCTACACAGACAGAACCCAGGACTCTGGGTAGGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102985.8
3UTR TCA 72 bp GTTAGCTCTCTTGTCTCTCGTGCCCACGTTAACACCTaGAGGAGACACAGAGGCAAAGTTCTTGAGTCACCT +
Preference number: 3 (lower is better)
Translates to: VSSLVSRAHVNT*RRHRGKVLESP
Trigger: AGGTGACTCAAGAACTTTGCCTCTGTGTCTCCTTCAGGTGTTAACGTGGGCACGAGAGACAAGAGAGCTAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
3UTR TCA 72 bp CTCCATACGAAGGAACTGAGTCACAAACTGGCTTGCTaGCTTCCCGTCAGAGAAAAAGCTGCAATCACAGTC +
Preference number: 3 (lower is better)
Translates to: LHTKELSHKLAC*LPVREKAAITV
Trigger: GACTGTGATTGCAGCTTTTTCTCTGACGGGAAGTCAGCAAGCCAGTTTGTGACTCAGTTCCTTCGTATGGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
3UTR TCA 72 bp CCCAGAGTCCTGGGTTCTGTCTGTGTAGCTGGTTTCTaGGTCACGTTTCACAGCCTCTCAAGTTGTACATTT +
Preference number: 3 (lower is better)
Translates to: PRVLGSVCVAGF*VTFHSLSSCTF
Trigger: AAATGTACAACTTGAGAGGCTGTGAAACGTGACTCAGAAACCAGCTACACAGACAGAACCCAGGACTCTGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102985.8
3UTR CCA 72 bp GGTGAGGAGAGCTTAGGCATTTCTATCCGAGTCCCATaGCACTGTAGGCAGAGAAACTTTTCTCCATACGAA +
Preference number: 3 (lower is better)
Translates to: GEESLGISIRVP*HCRQRNFSPYE
Trigger: TTCGTATGGAGAAAAGTTTCTCTGCCTACAGTGCCATGGGACTCGGATAGAAATGCCTAAGCTCTCCTCACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
3UTR CCA 72 bp GAAAAAGCTGCAATCACAGTCAACAGAAGGAAACCCTaGTACCCAGTGTCAGTAGATCCAGACTACACAGAG +
Preference number: 3 (lower is better)
Translates to: EKAAITVNRRKP*YPVSVDPDYTE
Trigger: CTCTGTGTAGTCTGGATCTACTGACACTGGGTACCAGGGTTTCCTTCTGTTGACTGTGATTGCAGCTTTTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
3UTR-3UTR CAA 90 bp AATATTCTGGGAAACCATACACACACAGACACACACACACATGATGAACACAAAACAGAGGCAAAGTTCTaGAGTCACCTTTCAGTTCTG +
Preference number: 3 (lower is better)
Translates to: NILGNHTHTDTHTHDEHKTEAKF*SHLSVL
Trigger: CAGAACTGAAAGGTGACTCAAGAACTTTGCCTCTGT...TTTGTGTTCATCATGTGTGTGTGTGTCTGTGTGTGTATGGTTTCCCAGAATATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102985.8
CDS-3UTR CCA 90 bp TCACCTTTCAGTTCTGGGGCAGGCATCTGTGACTCAAGGAAAAGCCGCAGTGCCTGCCTCTGCCCAGCTTaGGCATCCGTGGGGTTGCAG +
Preference number: 4 (lower is better)
Translates to: SPFSSGAGICDSRKSRSACLCPA*ASVGLQ
Trigger: CTGCAACCCCACGGATGCCCAAGCTGGGCAGAGGCA...GGCACTGCGGCTTTTCCTTGAGTCACAGATGCCTGCCCCAGAACTGAAAGGTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR GCA 90 bp CTGGGCTTCATGTTCCACATAAGGACTGAGCACGGAAGTGGGGAGAGACCCATGGGGCATCCGTGGGGTTaGAGTTCCTTCCAACCTGGG +
Preference number: 4 (lower is better)
Translates to: LGFMFHIRTEHGSGERPMGHPWG*SSFQPG
Trigger: CCCAGGTTGGAAGGAACTGCAACCCCACGGATGCCC...CATGGGTCTCTCCCCACTTCCGTGCTCAGTCCTTATGTGGAACATGAAGCCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR GCA 90 bp CACAGAGCCAATCTCTTGCTTTTCAGAGCCACAGGAGTAAGGCCGGTTGGGCGGCTCTTCACGCCGTCGTaGCAGTGGAGGTTATGCTGC +
Preference number: 4 (lower is better)
Translates to: HRANLLLFRATGVRPVGRLFTPS*QWRLCC
Trigger: GCAGCATAACCTCCACTGGCACGACGGCGTGAAGAG...CCGCCCAACCGGCCTTACTCCTGTGGCTCTGAAAAGCAAGAGATTGGCTCTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR TCA 90 bp GCACAGAGCCAATCTCTTGCTTTTCAGAGCCACAGGAGTAAGGCCGGTTGGGCGAGGTCTCCAGAGGCTTaGAGTGGGTATAGGTGCACG +
Preference number: 4 (lower is better)
Translates to: AQSQSLAFQSHRSKAGWARSPEA*SGYRCT
Trigger: CGTGCACCTATACCCACTTCAAGCCTCTGGAGACCT...CGCCCAACCGGCCTTACTCCTGTGGCTCTGAAAAGCAAGAGATTGGCTCTGTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR GCA 90 bp CTGGGCTTCATGTTCCACATAAGGACTGAGCACGGAAGTGGGGAGAGACCCATGCTTCTGAGATGCCTCTaGCCAGCTTGGGCATCCGTG +
Preference number: 4 (lower is better)
Translates to: LGFMFHIRTEHGSGERPMLLRCL*PAWASV
Trigger: CACGGATGCCCAAGCTGGGCAGAGGCATCTCAGAAG...CATGGGTCTCTCCCCACTTCCGTGCTCAGTCCTTATGTGGAACATGAAGCCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CCA 90 bp GCACAGAGCCAATCTCTTGCTTTTCAGAGCCACAGGAGTAAGGCCGGTTGGGCGCTCTGCAGGAGTCTTTaGCTTCCGAGCAACCCGCTT +
Preference number: 4 (lower is better)
Translates to: AQSQSLAFQSHRSKAGWALCRSL*LPSNPL
Trigger: AAGCGGGTTGCTCGGAAGCCAAAGACTCCTGCAGAG...CGCCCAACCGGCCTTACTCCTGTGGCTCTGAAAAGCAAGAGATTGGCTCTGTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CCA 90 bp CACAGAGCCAATCTCTTGCTTTTCAGAGCCACAGGAGTAAGGCCGGTTGGGCGGGGCTGTTCAGAAACTTaGCGTGCTCTTCCCCTCTCG +
Preference number: 4 (lower is better)
Translates to: HRANLLLFRATGVRPVGRGCSET*RALPLS
Trigger: CGAGAGGGGAAGAGCACGCCAAGTTTCTGAACAGCC...CCGCCCAACCGGCCTTACTCCTGTGGCTCTGAAAAGCAAGAGATTGGCTCTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR TCA 90 bp CTGGGCTTCATGTTCCACATAAGGACTGAGCACGGAAGTGGGGAGAGACCCATGGGGCCATCAATTCCCTaGACTCCTCAGAGCAGGACA +
Preference number: 4 (lower is better)
Translates to: LGFMFHIRTEHGSGERPMGPSIP*TPQSRT
Trigger: TGTCCTGCTCTGAGGAGTTCAGGGAATTGATGGCCC...CATGGGTCTCTCCCCACTTCCGTGCTCAGTCCTTATGTGGAACATGAAGCCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR GCA 90 bp GAGACCCATGCCATGTTAGCTCTCTTGTCTCTCGTGCCCACGTTAACACCTGAACGTCCCCTTCTGAGATaGCTCTGCCCAGCTTGGGCA +
Preference number: 4 (lower is better)
Translates to: ETHAMLALLSLVPTLTPERPLLR*LCPAWA
Trigger: TGCCCAAGCTGGGCAGAGGCATCTCAGAAGGGGACG...TTCAGGTGTTAACGTGGGCACGAGAGACAAGAGAGCTAACATGGCATGGGTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR GCA 90 bp GGGAGAGACCCATGCCATGTTAGCTCTCTTGTCTCTCGTGCCCACGTTAACACCTTCAGAAACTTGGCGTaGTCTTCCCCTCTCGGCAGC +
Preference number: 4 (lower is better)
Translates to: GRDPCHVSSLVSRAHVNTFRNLA*SSPLGS
Trigger: GCTGCCGAGAGGGGAAGAGCACGCCAAGTTTCTGAA...GGTGTTAACGTGGGCACGAGAGACAAGAGAGCTAACATGGCATGGGTCTCTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CCA 90 bp CTGGGCTTCATGTTCCACATAAGGACTGAGCACGGAAGTGGGGAGAGACCCATGTCCTGCTCATTTCTGTaGAGGAGACTCGAGGTCGCC +
Preference number: 4 (lower is better)
Translates to: LGFMFHIRTEHGSGERPMSCSFL*RRLEVA
Trigger: GGCGACCTCGAGTCTCCTCCACAGAAATGAGCAGGA...CATGGGTCTCTCCCCACTTCCGTGCTCAGTCCTTATGTGGAACATGAAGCCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CCA 90 bp AGGAAACCCTGGTACCCAGTGTCAGTAGATCCAGACTACACAGAGGCAGCGCTAGCCGCTCCTTCAGGCTaGTGCCTTTGCGGAACTTCT +
Preference number: 4 (lower is better)
Translates to: RKPWYPVSVDPDYTEAALAAPSG*CLCGTS
Trigger: AGAAGTTCCGCAAAGGCACCAGCCTGAAGGAGCGGC...TAGCGCTGCCTCTGTGTAGTCTGGATCTACTGACACTGGGTACCAGGGTTTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CCA 90 bp CACAGAGCCAATCTCTTGCTTTTCAGAGCCACAGGAGTAAGGCCGGTTGGGCGGCTGAGATGGACTGGATaGCAGGTTTGGAACTCCCTG +
Preference number: 4 (lower is better)
Translates to: HRANLLLFRATGVRPVGRLRWTG*QVWNSL
Trigger: CAGGGAGTTCCAAACCTGCCATCCAGTCCATCTCAG...CCGCCCAACCGGCCTTACTCCTGTGGCTCTGAAAAGCAAGAGATTGGCTCTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CCA 90 bp CATGGAGGAAAGCGGGTAGGCACCATGGTTATCAAGCACTTCTTTCTCACAGAGTGCCTCTGCCCAGCTTaGGCATCCGTGGGGTTGCAG +
Preference number: 4 (lower is better)
Translates to: HGGKRVGTMVIKHFFLTECLCPA*ASVGLQ
Trigger: CTGCAACCCCACGGATGCCCAAGCTGGGCAGAGGCA...CTCTGTGAGAAAGAAGTGCTTGATAACCATGGTGCCTACCCGCTTTCCTCCATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CCA 90 bp GTGGGGAGAGACCCATGCCATGTTAGCTCTCTTGTCTCTCGTGCCCACGTTAACGCTTGTCCAGGGAGATaGTCCTGTTTCCACAGGGAC +
Preference number: 4 (lower is better)
Translates to: VGRDPCHVSSLVSRAHVNACPGR*SCFHRD
Trigger: GTCCCTGTGGAAACAGGACCATCTCCCTGGACAAGC...GTTAACGTGGGCACGAGAGACAAGAGAGCTAACATGGCATGGGTCTCTCCCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR TCA 90 bp GGGAGAGACCCATGCCATGTTAGCTCTCTTGTCTCTCGTGCCCACGTTAACACCCAGTGGCTGCAGAGATaGATCAGGTGGTTCCTGCAA +
Preference number: 4 (lower is better)
Translates to: GRDPCHVSSLVSRAHVNTQWLQR*IRWFLQ
Trigger: TTGCAGGAACCACCTGATTCATCTCTGCAGCCACTG...GGTGTTAACGTGGGCACGAGAGACAAGAGAGCTAACATGGCATGGGTCTCTCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR GCA 90 bp TACCCAGTGTCAGTAGATCCAGACTACACAGAGGCAGCGCTATTCATCACCAGACGTCCCCTTCTGAGATaGCTCTGCCCAGCTTGGGCA +
Preference number: 4 (lower is better)
Translates to: YPVSVDPDYTEAALFITRRPLLR*LCPAWA
Trigger: TGCCCAAGCTGGGCAGAGGCATCTCAGAAGGGGACG...TCTGGTGATGAATAGCGCTGCCTCTGTGTAGTCTGGATCTACTGACACTGGGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CCA 90 bp GCACAGAGCCAATCTCTTGCTTTTCAGAGCCACAGGAGTAAGGCCGGTTGGGCGTGGCTTTGGGTAAAGTaGGGACATCAAGCTCTGCAG +
Preference number: 4 (lower is better)
Translates to: AQSQSLAFQSHRSKAGWAWLWVK*GHQALQ
Trigger: CTGCAGAGCTTGATGTCCCCACTTTACCCAAAGCCA...CGCCCAACCGGCCTTACTCCTGTGGCTCTGAAAAGCAAGAGATTGGCTCTGTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CCA 90 bp AGTCACCTTTCAGTTCTGGGGCAGGCATCTGTGACTCAAGGAAAAGCCGCAGTGTCCTGCTCATTTCTGTaGAGGAGACTCGAGGTCGCC +
Preference number: 4 (lower is better)
Translates to: SHLSVLGQASVTQGKAAVSCSFL*RRLEVA
Trigger: GGCGACCTCGAGTCTCCTCCACAGAAATGAGCAGGA...CACTGCGGCTTTTCCTTGAGTCACAGATGCCTGCCCCAGAACTGAAAGGTGACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CCA 90 bp CTTAGGGAAACAGGGACTACAATGGTTAGCGCCTTCAGCCCACACAGAGCAGAGGGGCTGATGCTGAGATaGACTGGATGGCAGGTTTGG +
Preference number: 4 (lower is better)
Translates to: LRETGTTMVSAFSPHRAEGLMLR*TGWQVW
Trigger: CCAAACCTGCCATCCAGTCCATCTCAGCATCAGCCC...CTCTGCTCTGTGTGGGCTGAAGGCGCTAACCATTGTAGTCCCTGTTTCCCTAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102985.8
CDS-3UTR TCA 90 bp TATCAAGCACTTCTTTCTCACAGAGTCAACCAGGAAAAAGGACAGCACAGAGCCAGACTCGAGGTCGCCTaGGGCGTAGGCCTGAGAAGG +
Preference number: 4 (lower is better)
Translates to: YQALLSHRVNQEKGQHRARLEVA*GVGLRR
Trigger: CCTTCTCAGGCCTACGCCTCAGGCGACCTCGAGTCT...GGCTCTGTGCTGTCCTTTTTCCTGGTTGACTCTGTGAGAAAGAAGTGCTTGATA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR TCA 90 bp TCACCTTTCAGTTCTGGGGCAGGCATCTGTGACTCAAGGAAAAGCCGCAGTGCCGTTTTGTTTCCTGGATaGTCGAGTTTGTGCCCCGGA +
Preference number: 4 (lower is better)
Translates to: SPFSSGAGICDSRKSRSAVLFPG*SSLCPG
Trigger: TCCGGGGCACAAACTCGATCATCCAGGAAACAAAAC...GGCACTGCGGCTTTTCCTTGAGTCACAGATGCCTGCCCCAGAACTGAAAGGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR TCA 90 bp GAGACCCATGCCATGTTAGCTCTCTTGTCTCTCGTGCCCACGTTAACACCTGAAGGGCCATCAATTCCCTaGACTCCTCAGAGCAGGACA +
Preference number: 4 (lower is better)
Translates to: ETHAMLALLSLVPTLTPEGPSIP*TPQSRT
Trigger: TGTCCTGCTCTGAGGAGTTCAGGGAATTGATGGCCC...TTCAGGTGTTAACGTGGGCACGAGAGACAAGAGAGCTAACATGGCATGGGTCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR GCA 90 bp AGGACAGCACAGAGCCAATCTCTTGCTTTTCAGAGCCACAGGAGTAAGGCCGGTTCAGGCTGGTGCCTTTaGGGAACTTCTTCGGAATCC +
Preference number: 4 (lower is better)
Translates to: RTAQSQSLAFQSHRSKAGSGWCL*GTSSES
Trigger: GGATTCCGAAGAAGTTCCGCAAAGGCACCAGCCTGA...ACCGGCCTTACTCCTGTGGCTCTGAAAAGCAAGAGATTGGCTCTGTGCTGTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR GCA 90 bp ATTAAAGAAATAAAGGCACCCACACTCAGGTCCCCAGAGCTCTGTAAGCACCTGGGGCATCCGTGGGGTTaGAGTTCCTTCCAACCTGGG +
Preference number: 4 (lower is better)
Translates to: IKEIKAPTLRSPELCKHLGHPWG*SSFQPG
Trigger: CCCAGGTTGGAAGGAACTGCAACCCCACGGATGCCC...CAGGTGCTTACAGAGCTCTGGGGACCTGAGTGTGGGTGCCTTTATTTCTTTAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000102985.8
CDS-3UTR GCA 90 bp TCTCCATACGAAGGAACTGAGTCACAAACTGGCTTGCTGACTTCCCGTCAGAGACTTCTGAGATGCCTCTaGCCAGCTTGGGCATCCGTG +
Preference number: 4 (lower is better)
Translates to: SPYEGTESQTGLLTSRQRLLRCL*PAWASV
Trigger: CACGGATGCCCAAGCTGGGCAGAGGCATCTCAGAAG...TCTCTGACGGGAAGTCAGCAAGCCAGTTTGTGACTCAGTTCCTTCGTATGGAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CCA 90 bp GGGAGAGACCCATGCCATGTTAGCTCTCTTGTCTCTCGTGCCCACGTTAACACCCATCACCAAAGAGAGTaGCCAAACGTTCCTCCTGGT +
Preference number: 4 (lower is better)
Translates to: GRDPCHVSSLVSRAHVNTHHQRE*PNVPPG
Trigger: ACCAGGAGGAACGTTTGGCCACTCTCTTTGGTGATG...GGTGTTAACGTGGGCACGAGAGACAAGAGAGCTAACATGGCATGGGTCTCTCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CCA 90 bp GAGACCCATGCCATGTTAGCTCTCTTGTCTCTCGTGCCCACGTTAACACCTGAAGGGCTGATGCTGAGATaGACTGGATGGCAGGTTTGG +
Preference number: 4 (lower is better)
Translates to: ETHAMLALLSLVPTLTPEGLMLR*TGWQVW
Trigger: CCAAACCTGCCATCCAGTCCATCTCAGCATCAGCCC...TTCAGGTGTTAACGTGGGCACGAGAGACAAGAGAGCTAACATGGCATGGGTCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR TCA 90 bp CATGGTTATCAAGCACTTCTTTCTCACAGAGTCAACCAGGAAAAAGGACAGCACAGACTCGAGGTCGCCTaGGGCGTAGGCCTGAGAAGG +
Preference number: 4 (lower is better)
Translates to: HGYQALLSHRVNQEKGQHRLEVA*GVGLRR
Trigger: CCTTCTCAGGCCTACGCCTCAGGCGACCTCGAGTCT...GTGCTGTCCTTTTTCCTGGTTGACTCTGTGAGAAAGAAGTGCTTGATAACCATG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR TCA 90 bp CTGGGCTTCATGTTCCACATAAGGACTGAGCACGGAAGTGGGGAGAGACCCATGTTGGTCAGCGTGGTTTaGACCTTCTTCTTAGGAGCA +
Preference number: 4 (lower is better)
Translates to: LGFMFHIRTEHGSGERPMLVSVV*TFFLGA
Trigger: TGCTCCTAAGAAGAAGGTTCAAACCACGCTGACCAA...CATGGGTCTCTCCCCACTTCCGTGCTCAGTCCTTATGTGGAACATGAAGCCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR TCA 90 bp AGGAAACCCTGGTACCCAGTGTCAGTAGATCCAGACTACACAGAGGCAGCGCTAGTTTTGTTTCCTGGATaGTCGAGTTTGTGCCCCGGA +
Preference number: 4 (lower is better)
Translates to: RKPWYPVSVDPDYTEAALVLFPG*SSLCPG
Trigger: TCCGGGGCACAAACTCGATCATCCAGGAAACAAAAC...TAGCGCTGCCTCTGTGTAGTCTGGATCTACTGACACTGGGTACCAGGGTTTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR TCA 90 bp AGGAAACCCTGGTACCCAGTGTCAGTAGATCCAGACTACACAGAGGCAGCGCTAGCTCTGGACTTCACTTaGGCTTTGGAGGAATCGCTT +
Preference number: 4 (lower is better)
Translates to: RKPWYPVSVDPDYTEAALALDFT*ALEESL
Trigger: AAGCGATTCCTCCAAAGCTCAAGTGAAGTCCAGAGC...TAGCGCTGCCTCTGTGTAGTCTGGATCTACTGACACTGGGTACCAGGGTTTCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR TCA 90 bp AGCACATGGAGGAAAGCGGGTAGGCACCATGGTTATCAAGCACTTCTTTCTCACAGGTCTCCAGAGGCTTaGAGTGGGTATAGGTGCACG +
Preference number: 4 (lower is better)
Translates to: STWRKAGRHHGYQALLSHRSPEA*SGYRCT
Trigger: CGTGCACCTATACCCACTTCAAGCCTCTGGAGACCT...GTGAGAAAGAAGTGCTTGATAACCATGGTGCCTACCCGCTTTCCTCCATGTGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR GCA 90 bp TCTCCATACGAAGGAACTGAGTCACAAACTGGCTTGCTGACTTCCCGTCAGAGATGGTTCCTGCAAGGGTaGTGTCCCTGGAGGCTGTTT +
Preference number: 4 (lower is better)
Translates to: SPYEGTESQTGLLTSRQRWFLQG*CPWRLF
Trigger: AAACAGCCTCCAGGGACAGCACCCTTGCAGGAACCA...TCTCTGACGGGAAGTCAGCAAGCCAGTTTGTGACTCAGTTCCTTCGTATGGAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR GCA 90 bp TCTCCATACGAAGGAACTGAGTCACAAACTGGCTTGCTGACTTCCCGTCAGAGAGAATCAGGTGGTTCCTaGAAGGGTGCTGTCCCTGGA +
Preference number: 4 (lower is better)
Translates to: SPYEGTESQTGLLTSRQRESGGS*KGAVPG
Trigger: TCCAGGGACAGCACCCTTGCAGGAACCACCTGATTC...TCTCTGACGGGAAGTCAGCAAGCCAGTTTGTGACTCAGTTCCTTCGTATGGAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR GCA 90 bp CTGGGCTTCATGTTCCACATAAGGACTGAGCACGGAAGTGGGGAGAGACCCATGTCCTTAAGCAGTGGCTaGAGAGATGAATCAGGTGGT +
Preference number: 4 (lower is better)
Translates to: LGFMFHIRTEHGSGERPMSLSSG*RDESGG
Trigger: ACCACCTGATTCATCTCTGCAGCCACTGCTTAAGGA...CATGGGTCTCTCCCCACTTCCGTGCTCAGTCCTTATGTGGAACATGAAGCCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CCA 90 bp GGGAGAGACCCATGCCATGTTAGCTCTCTTGTCTCTCGTGCCCACGTTAACACCGTCCCCAGAATTCCCTaGGGACACTGTGTTTTGATT +
Preference number: 4 (lower is better)
Translates to: GRDPCHVSSLVSRAHVNTVPRIP*GHCVLI
Trigger: AATCAAAACACAGTGTCCCCAGGGAATTCTGGGGAC...GGTGTTAACGTGGGCACGAGAGACAAGAGAGCTAACATGGCATGGGTCTCTCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CCA 90 bp GTTGGGACATTACAGACAAGCAGCCTGGGCTTCATGTTCCACATAAGGACTGAGGGCTGTTCAGAAACTTaGCGTGCTCTTCCCCTCTCG +
Preference number: 4 (lower is better)
Translates to: VGTLQTSSLGFMFHIRTEGCSET*RALPLS
Trigger: CGAGAGGGGAAGAGCACGCCAAGTTTCTGAACAGCC...CTCAGTCCTTATGTGGAACATGAAGCCCAGGCTGCTTGTCTGTAATGTCCCAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR TCA 90 bp GCTCTCTTGTCTCTCGTGCCCACGTTAACACCTGAAGGAGACACAGAGGCAAAGTGCAGAAAAGCACGCTaGCTCCTGAATTCTCCGAAT +
Preference number: 4 (lower is better)
Translates to: ALLSLVPTLTPEGDTEAKCRKAR*LLNSPN
Trigger: ATTCGGAGAATTCAGGAGTCAGCGTGCTTTTCTGCA...CTTTGCCTCTGTGTCTCCTTCAGGTGTTAACGTGGGCACGAGAGACAAGAGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR TCA 90 bp AGTCACCTTTCAGTTCTGGGGCAGGCATCTGTGACTCAAGGAAAAGCCGCAGTGTGCAGAAAAGCACGCTaGCTCCTGAATTCTCCGAAT +
Preference number: 4 (lower is better)
Translates to: SHLSVLGQASVTQGKAAVCRKAR*LLNSPN
Trigger: ATTCGGAGAATTCAGGAGTCAGCGTGCTTTTCTGCA...CACTGCGGCTTTTCCTTGAGTCACAGATGCCTGCCCCAGAACTGAAAGGTGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR TCA 90 bp GAGACCCATGCCATGTTAGCTCTCTTGTCTCTCGTGCCCACGTTAACACCTGAATACTGGGCCTGGATGTaGTACTGGCAGTATTCACAG +
Preference number: 4 (lower is better)
Translates to: ETHAMLALLSLVPTLTPEYWAWM*YWQYSQ
Trigger: CTGTGAATACTGCCAGTATCACATCCAGGCCCAGTA...TTCAGGTGTTAACGTGGGCACGAGAGACAAGAGAGCTAACATGGCATGGGTCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR GCA 90 bp CTGGGCTTCATGTTCCACATAAGGACTGAGCACGGAAGTGGGGAGAGACCCATGTTCCAGGTTCTCAGTTaGCATCTTCTCCTTGATCTG +
Preference number: 4 (lower is better)
Translates to: LGFMFHIRTEHGSGERPMFQVLS*HLLLDL
Trigger: CAGATCAAGGAGAAGATGGCAACTGAGAACCTGGAA...CATGGGTCTCTCCCCACTTCCGTGCTCAGTCCTTATGTGGAACATGAAGCCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR GCA 90 bp GTGGGGAGAGACCCATGCCATGTTAGCTCTCTTGTCTCTCGTGCCCACGTTAACTTCCAGGTTCTCAGTTaGCATCTTCTCCTTGATCTG +
Preference number: 4 (lower is better)
Translates to: VGRDPCHVSSLVSRAHVNFQVLS*HLLLDL
Trigger: CAGATCAAGGAGAAGATGGCAACTGAGAACCTGGAA...GTTAACGTGGGCACGAGAGACAAGAGAGCTAACATGGCATGGGTCTCTCCCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR GCA 90 bp AGGACAGCACAGAGCCAATCTCTTGCTTTTCAGAGCCACAGGAGTAAGGCCGGTCAGGAGAAACTGTGTTaGTATTCTCCACACGCTCCT +
Preference number: 4 (lower is better)
Translates to: RTAQSQSLAFQSHRSKAGQEKLC*YSPHAP
Trigger: AGGAGCGTGTGGAGAATAGCAACACAGTTTCTCCTG...ACCGGCCTTACTCCTGTGGCTCTGAAAAGCAAGAGATTGGCTCTGTGCTGTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR GCA 90 bp TATCAAGCACTTCTTTCTCACAGAGTCAACCAGGAAAAAGGACAGCACAGAGCCCTCTTCACGCCGTCGTaGCAGTGGAGGTTATGCTGC +
Preference number: 4 (lower is better)
Translates to: YQALLSHRVNQEKGQHRALFTPS*QWRLCC
Trigger: GCAGCATAACCTCCACTGGCACGACGGCGTGAAGAG...GGCTCTGTGCTGTCCTTTTTCCTGGTTGACTCTGTGAGAAAGAAGTGCTTGATA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CCA 90 bp AGTCACCTTTCAGTTCTGGGGCAGGCATCTGTGACTCAAGGAAAAGCCGCAGTGCTTTCAAGCCATCTTTaGGCTTCATGGGGTTTGCGT +
Preference number: 4 (lower is better)
Translates to: SHLSVLGQASVTQGKAAVLSSHL*ASWGLR
Trigger: ACGCAAACCCCATGAAGCCCAAAGATGGCTTGAAAG...CACTGCGGCTTTTCCTTGAGTCACAGATGCCTGCCCCAGAACTGAAAGGTGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CCA 90 bp GTTGGGACATTACAGACAAGCAGCCTGGGCTTCATGTTCCACATAAGGACTGAGGTCCCCCAGAGAAAGTaGACTGCAGATCAGTCCTCT +
Preference number: 4 (lower is better)
Translates to: VGTLQTSSLGFMFHIRTEVPQRK*TADQSS
Trigger: AGAGGACTGATCTGCAGTCCACTTTCTCTGGGGGAC...CTCAGTCCTTATGTGGAACATGAAGCCCAGGCTGCTTGTCTGTAATGTCCCAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CCA 90 bp GTGGGGAGAGACCCATGCCATGTTAGCTCTCTTGTCTCTCGTGCCCACGTTAACCAGGACAAGCTCTTCTaGGGAATACCAAGCTTTTGT +
Preference number: 4 (lower is better)
Translates to: VGRDPCHVSSLVSRAHVNQDKLF*GIPSFC
Trigger: ACAAAAGCTTGGTATTCCCCAGAAGAGCTTGTCCTG...GTTAACGTGGGCACGAGAGACAAGAGAGCTAACATGGCATGGGTCTCTCCCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CCA 90 bp GGGAGAGACCCATGCCATGTTAGCTCTCTTGTCTCTCGTGCCCACGTTAACACCCTGAAGCCTTGGCTCTaGCTAGATGCTTTTGTAAGT +
Preference number: 4 (lower is better)
Translates to: GRDPCHVSSLVSRAHVNTLKPWL*LDAFVS
Trigger: ACTTACAAAAGCATCTAGCCAGAGCCAAGGCTTCAG...GGTGTTAACGTGGGCACGAGAGACAAGAGAGCTAACATGGCATGGGTCTCTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CCA 90 bp TCACCTTTCAGTTCTGGGGCAGGCATCTGTGACTCAAGGAAAAGCCGCAGTGCCATTTCACTTCCCGGGTaGCTCTCATCTTTTCTTCCA +
Preference number: 4 (lower is better)
Translates to: SPFSSGAGICDSRKSRSAISLPG*LSSFLP
Trigger: TGGAAGAAAAGATGAGAGCCACCCGGGAAGTGAAAT...GGCACTGCGGCTTTTCCTTGAGTCACAGATGCCTGCCCCAGAACTGAAAGGTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CCA 90 bp GTTGGGACATTACAGACAAGCAGCCTGGGCTTCATGTTCCACATAAGGACTGAGACGGCAGTGCTTGTTTaGGAGCTTGTCCAGGGAGAT +
Preference number: 4 (lower is better)
Translates to: VGTLQTSSLGFMFHIRTETAVLV*ELVQGD
Trigger: ATCTCCCTGGACAAGCTCCCAAACAAGCACTGCCGT...CTCAGTCCTTATGTGGAACATGAAGCCCAGGCTGCTTGTCTGTAATGTCCCAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CCA 90 bp TCTCCATACGAAGGAACTGAGTCACAAACTGGCTTGCTGACTTCCCGTCAGAGAACGGCAGTGCTTGTTTaGGAGCTTGTCCAGGGAGAT +
Preference number: 4 (lower is better)
Translates to: SPYEGTESQTGLLTSRQRTAVLV*ELVQGD
Trigger: ATCTCCCTGGACAAGCTCCCAAACAAGCACTGCCGT...TCTCTGACGGGAAGTCAGCAAGCCAGTTTGTGACTCAGTTCCTTCGTATGGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR TCA 90 bp CACAGAGCCAATCTCTTGCTTTTCAGAGCCACAGGAGTAAGGCCGGTTGGGCGGTTCCAGAGATCTTTGTaGACATCTCCAAACAAGAAC +
Preference number: 4 (lower is better)
Translates to: HRANLLLFRATGVRPVGRFQRSL*TSPNKN
Trigger: GTTCTTGTTTGGAGATGTTCACAAAGATCTCTGGAA...CCGCCCAACCGGCCTTACTCCTGTGGCTCTGAAAAGCAAGAGATTGGCTCTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR TCA 90 bp AGTCACCTTTCAGTTCTGGGGCAGGCATCTGTGACTCAAGGAAAAGCCGCAGTGTTGGATCTACTTTTGTaGGAATCTGGCCTTTTGCCC +
Preference number: 4 (lower is better)
Translates to: SHLSVLGQASVTQGKAAVLDLLL*ESGLLP
Trigger: GGGCAAAAGGCCAGATTCTCACAAAAGTAGATCCAA...CACTGCGGCTTTTCCTTGAGTCACAGATGCCTGCCCCAGAACTGAAAGGTGACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR TCA 90 bp CACACAATAGTAAGCACACCTGTAGGCCTACCCAGAGTCCTGGGTTCTGTCTGTTTCCACAGGGACATTTaGAAAACCTCTTCACGCCGT +
Preference number: 4 (lower is better)
Translates to: HTIVSTPVGLPRVLGSVCFHRDI*KTSSRR
Trigger: ACGGCGTGAAGAGGTTTTTCAAATGTCCCTGTGGAA...ACAGACAGAACCCAGGACTCTGGGTAGGCCTACAGGTGTGCTTACTATTGTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102985.8
CDS-3UTR GCA 90 bp CACAGAGCCAATCTCTTGCTTTTCAGAGCCACAGGAGTAAGGCCGGTTGGGCGGGATGCAGCTTTTAGCTaGTCCTGTAAGGATTTCATT +
Preference number: 4 (lower is better)
Translates to: HRANLLLFRATGVRPVGRDAAFS*SCKDFI
Trigger: AATGAAATCCTTACAGGAGCAGCTAAAAGCTGCATC...CCGCCCAACCGGCCTTACTCCTGTGGCTCTGAAAAGCAAGAGATTGGCTCTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR GCA 90 bp AGCACATGGAGGAAAGCGGGTAGGCACCATGGTTATCAAGCACTTCTTTCTCACCTTGAGGTGAGGGTGTaGTTGATCTCGAAGAAGAGG +
Preference number: 4 (lower is better)
Translates to: STWRKAGRHHGYQALLSHLEVRV*LISKKR
Trigger: CCTCTTCTTCGAGATCAAGCACACCCTCACCTCAAG...GTGAGAAAGAAGTGCTTGATAACCATGGTGCCTACCCGCTTTCCTCCATGTGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR GCA 90 bp CTGGGCTTCATGTTCCACATAAGGACTGAGCACGGAAGTGGGGAGAGACCCATGTTGGCTCTGGCTAGATaGTTTTGTAAGTTTCTGGCT +
Preference number: 4 (lower is better)
Translates to: LGFMFHIRTEHGSGERPMLALAR*FCKFLA
Trigger: AGCCAGAAACTTACAAAAGCATCTAGCCAGAGCCAA...CATGGGTCTCTCCCCACTTCCGTGCTCAGTCCTTATGTGGAACATGAAGCCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR GCA 90 bp AGGACAGCACAGAGCCAATCTCTTGCTTTTCAGAGCCACAGGAGTAAGGCCGGTAGCATCTGTTGTTTCTaGTGCTTCAAGAGGGCTGAT +
Preference number: 4 (lower is better)
Translates to: RTAQSQSLAFQSHRSKAGSICCF*CFKRAD
Trigger: ATCAGCCCTCTTGAAGCAGCAGAAACAACAGATGCT...ACCGGCCTTACTCCTGTGGCTCTGAAAAGCAAGAGATTGGCTCTGTGCTGTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR GCA 90 bp GCTCTCTTGTCTCTCGTGCCCACGTTAACACCTGAAGGAGACACAGAGGCAAAGCTTTTTAGCTTCTGCTaGTGCGCTCAGTTTTGGTCT +
Preference number: 4 (lower is better)
Translates to: ALLSLVPTLTPEGDTEAKLFSFC*CAQFWS
Trigger: AGACCAAAACTGAGCGCAGCAGCAGAAGCTAAAAAG...CTTTGCCTCTGTGTCTCCTTCAGGTGTTAACGTGGGCACGAGAGACAAGAGAGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CCA 90 bp AGGAGACACAGAGGCAAAGTTCTTGAGTCACCTTTCAGTTCTGGGGCAGGCATCCTTTCAAGCCATCTTTaGGCTTCATGGGGTTTGCGT +
Preference number: 4 (lower is better)
Translates to: RRHRGKVLESPFSSGAGILSSHL*ASWGLR
Trigger: ACGCAAACCCCATGAAGCCCAAAGATGGCTTGAAAG...GATGCCTGCCCCAGAACTGAAAGGTGACTCAAGAACTTTGCCTCTGTGTCTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CCA 90 bp CATGGTTATCAAGCACTTCTTTCTCACAGAGTCAACCAGGAAAAAGGACAGCACGCCGCTCCTTCAGGCTaGTGCCTTTGCGGAACTTCT +
Preference number: 4 (lower is better)
Translates to: HGYQALLSHRVNQEKGQHAAPSG*CLCGTS
Trigger: AGAAGTTCCGCAAAGGCACCAGCCTGAAGGAGCGGC...GTGCTGTCCTTTTTCCTGGTTGACTCTGTGAGAAAGAAGTGCTTGATAACCATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CCA 90 bp ATTAAAGAAATAAAGGCACCCACACTCAGGTCCCCAGAGCTCTGTAAGCACCTGACTGGATGGCAGGTTTaGAACTCCCTGAAGCCTTGG +
Preference number: 4 (lower is better)
Translates to: IKEIKAPTLRSPELCKHLTGWQV*NSLKPW
Trigger: CCAAGGCTTCAGGGAGTTCCAAACCTGCCATCCAGT...CAGGTGCTTACAGAGCTCTGGGGACCTGAGTGTGGGTGCCTTTATTTCTTTAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102985.8
CDS-3UTR CCA 90 bp GCACTTCTTTCTCACAGAGTCAACCAGGAAAAAGGACAGCACAGAGCCAATCTCCTGAGATGGACTGGATaGCAGGTTTGGAACTCCCTG +
Preference number: 4 (lower is better)
Translates to: ALLSHRVNQEKGQHRANLLRWTG*QVWNSL
Trigger: CAGGGAGTTCCAAACCTGCCATCCAGTCCATCTCAG...GAGATTGGCTCTGTGCTGTCCTTTTTCCTGGTTGACTCTGTGAGAAAGAAGTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CCA 90 bp AAAGTTCTTGAGTCACCTTTCAGTTCTGGGGCAGGCATCTGTGACTCAAGGAAAGCTTGTCCAGGGAGATaGTCCTGTTTCCACAGGGAC +
Preference number: 4 (lower is better)
Translates to: KVLESPFSSGAGICDSRKACPGR*SCFHRD
Trigger: GTCCCTGTGGAAACAGGACCATCTCCCTGGACAAGC...TTTCCTTGAGTCACAGATGCCTGCCCCAGAACTGAAAGGTGACTCAAGAACTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
3UTR CAA 72 bp ACGTTAACACCTGAAGGAGACACAGAGGCAAAGTTCTaGAGTCACCTTTCAGTTCTGGGGCAGGCATCTGTG +
Preference number: 4 (lower is better)
Translates to: TLTPEGDTEAKF*SHLSVLGQASV
Trigger: CACAGATGCCTGCCCCAGAACTGAAAGGTGACTCAAGAACTTTGCCTCTGTGTCTCCTTCAGGTGTTAACGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR TCA 90 bp AAAGTTCTTGAGTCACCTTTCAGTTCTGGGGCAGGCATCTGTGACTCAAGGAAACAGTGGCTGCAGAGATaGATCAGGTGGTTCCTGCAA +
Preference number: 4 (lower is better)
Translates to: KVLESPFSSGAGICDSRKQWLQR*IRWFLQ
Trigger: TTGCAGGAACCACCTGATTCATCTCTGCAGCCACTG...TTTCCTTGAGTCACAGATGCCTGCCCCAGAACTGAAAGGTGACTCAAGAACTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR TCA 90 bp GCACTTCTTTCTCACAGAGTCAACCAGGAAAAAGGACAGCACAGAGCCAATCTCTTTCCAGGAACAGCTTaGGGTGAGGGTGTGCTTGAT +
Preference number: 4 (lower is better)
Translates to: ALLSHRVNQEKGQHRANLFPGTA*GEGVLD
Trigger: ATCAAGCACACCCTCACCTCAAGCTGTTCCTGGAAA...GAGATTGGCTCTGTGCTGTCCTTTTTCCTGGTTGACTCTGTGAGAAAGAAGTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR TCA 90 bp CATGGTTATCAAGCACTTCTTTCTCACAGAGTCAACCAGGAAAAAGGACAGCACCAGTCCTCTTTGCGCTaGGCTTCTTGTACTGGGCCT +
Preference number: 4 (lower is better)
Translates to: HGYQALLSHRVNQEKGQHQSSLR*ASCTGP
Trigger: AGGCCCAGTACAAGAAGCTCAGCGCAAAGAGGACTG...GTGCTGTCCTTTTTCCTGGTTGACTCTGTGAGAAAGAAGTGCTTGATAACCATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR TCA 90 bp GTTGGGACATTACAGACAAGCAGCCTGGGCTTCATGTTCCACATAAGGACTGAGCTTCTGTATGTCTTCTaGTCTCCTCTTCCGCATCTC +
Preference number: 4 (lower is better)
Translates to: VGTLQTSSLGFMFHIRTELLYVF*SPLPHL
Trigger: GAGATGCGGAAGAGGAGATCAGAAGACATACAGAAG...CTCAGTCCTTATGTGGAACATGAAGCCCAGGCTGCTTGTCTGTAATGTCCCAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR TCA 90 bp ATTAAAGAAATAAAGGCACCCACACTCAGGTCCCCAGAGCTCTGTAAGCACCTGGCTCTGGACTTCACTTaGGCTTTGGAGGAATCGCTT +
Preference number: 4 (lower is better)
Translates to: IKEIKAPTLRSPELCKHLALDFT*ALEESL
Trigger: AAGCGATTCCTCCAAAGCTCAAGTGAAGTCCAGAGC...CAGGTGCTTACAGAGCTCTGGGGACCTGAGTGTGGGTGCCTTTATTTCTTTAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102985.8
CDS-3UTR TCA 90 bp CTGGGCTTCATGTTCCACATAAGGACTGAGCACGGAAGTGGGGAGAGACCCATGGCTTTTAGAATCTTCTaGAATTCCTCGGACTCTAAG +
Preference number: 4 (lower is better)
Translates to: LGFMFHIRTEHGSGERPMAFRIF*NSSDSK
Trigger: CTTAGAGTCCGAGGAATTTCAGAAGATTCTAAAAGC...CATGGGTCTCTCCCCACTTCCGTGCTCAGTCCTTATGTGGAACATGAAGCCCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR TCA 90 bp CATGGAGGAAAGCGGGTAGGCACCATGGTTATCAAGCACTTCTTTCTCACAGAGTTCCACAGGGACATTTaGAAAACCTCTTCACGCCGT +
Preference number: 4 (lower is better)
Translates to: HGGKRVGTMVIKHFFLTEFHRDI*KTSSRR
Trigger: ACGGCGTGAAGAGGTTTTTCAAATGTCCCTGTGGAA...CTCTGTGAGAAAGAAGTGCTTGATAACCATGGTGCCTACCCGCTTTCCTCCATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR GCA 90 bp GACTTCCCGTCAGAGAAAAAGCTGCAATCACAGTCAACAGAAGGAAACCCTGGTCTTGAGGTGAGGGTGTaGTTGATCTCGAAGAAGAGG +
Preference number: 4 (lower is better)
Translates to: DFPSEKKLQSQSTEGNPGLEVRV*LISKKR
Trigger: CCTCTTCTTCGAGATCAAGCACACCCTCACCTCAAG...ACCAGGGTTTCCTTCTGTTGACTGTGATTGCAGCTTTTTCTCTGACGGGAAGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR GCA 90 bp AGCACATGGAGGAAAGCGGGTAGGCACCATGGTTATCAAGCACTTCTTTCTCACCAGATCAGTCCTCTTTaGGCTGAGCTTCTTGTACTG +
Preference number: 4 (lower is better)
Translates to: STWRKAGRHHGYQALLSHQISPL*AELLVL
Trigger: CAGTACAAGAAGCTCAGCGCAAAGAGGACTGATCTG...GTGAGAAAGAAGTGCTTGATAACCATGGTGCCTACCCGCTTTCCTCCATGTGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR GCA 90 bp TATCAAGCACTTCTTTCTCACAGAGTCAACCAGGAAAAAGGACAGCACAGAGCCTCAGGCTGGTGCCTTTaGGGAACTTCTTCGGAATCC +
Preference number: 4 (lower is better)
Translates to: YQALLSHRVNQEKGQHRASGWCL*GTSSES
Trigger: GGATTCCGAAGAAGTTCCGCAAAGGCACCAGCCTGA...GGCTCTGTGCTGTCCTTTTTCCTGGTTGACTCTGTGAGAAAGAAGTGCTTGATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR GCA 90 bp GAGACCCATGCCATGTTAGCTCTCTTGTCTCTCGTGCCCACGTTAACACCTGAAATCTGTTGTTTCTGCTaGTTCAAGAGGGCTGATGCT +
Preference number: 4 (lower is better)
Translates to: ETHAMLALLSLVPTLTPEICCFC*FKRADA
Trigger: AGCATCAGCCCTCTTGAAGCAGCAGAAACAACAGAT...TTCAGGTGTTAACGTGGGCACGAGAGACAAGAGAGCTAACATGGCATGGGTCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR GCA 90 bp GCTCTCTTGTCTCTCGTGCCCACGTTAACACCTGAAGGAGACACAGAGGCAAAGGCTCGGCCATCCATTTaGTTCCTTACAGTATTGTTT +
Preference number: 4 (lower is better)
Translates to: ALLSLVPTLTPEGDTEAKARPSI*FLTVLF
Trigger: AAACAATACTGTAAGGAAGCAAATGGATGGCCGAGC...CTTTGCCTCTGTGTCTCCTTCAGGTGTTAACGTGGGCACGAGAGACAAGAGAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR GCA 90 bp GTGGGGAGAGACCCATGCCATGTTAGCTCTCTTGTCTCTCGTGCCCACGTTAACTTCAGGATGTCTGTGTaGTTGGACTTTGCTTTTAGA +
Preference number: 4 (lower is better)
Translates to: VGRDPCHVSSLVSRAHVNFRMSV*LDFAFR
Trigger: TCTAAAAGCAAAGTCCAAGCACACAGACATCCTGAA...GTTAACGTGGGCACGAGAGACAAGAGAGCTAACATGGCATGGGTCTCTCCCCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CCA 90 bp GCACTTCTTTCTCACAGAGTCAACCAGGAAAAAGGACAGCACAGAGCCAATCTCCATCACCAAAGAGAGTaGCCAAACGTTCCTCCTGGT +
Preference number: 4 (lower is better)
Translates to: ALLSHRVNQEKGQHRANLHHQRE*PNVPPG
Trigger: ACCAGGAGGAACGTTTGGCCACTCTCTTTGGTGATG...GAGATTGGCTCTGTGCTGTCCTTTTTCCTGGTTGACTCTGTGAGAAAGAAGTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CCA 90 bp CTGGGCTTCATGTTCCACATAAGGACTGAGCACGGAAGTGGGGAGAGACCCATGTTTTGTTTTGTTTCCTaGATGATCGAGTTTGTGCCC +
Preference number: 4 (lower is better)
Translates to: LGFMFHIRTEHGSGERPMFCFVS*MIEFVP
Trigger: GGGCACAAACTCGATCATCCAGGAAACAAAACAAAA...CATGGGTCTCTCCCCACTTCCGTGCTCAGTCCTTATGTGGAACATGAAGCCCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CCA 90 bp AGCACATGGAGGAAAGCGGGTAGGCACCATGGTTATCAAGCACTTCTTTCTCACAACTCCCTGAAGCCTTaGCTCTGGCTAGATGCTTTT +
Preference number: 4 (lower is better)
Translates to: STWRKAGRHHGYQALLSHNSLKP*LWLDAF
Trigger: AAAAGCATCTAGCCAGAGCCAAGGCTTCAGGGAGTT...GTGAGAAAGAAGTGCTTGATAACCATGGTGCCTACCCGCTTTCCTCCATGTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CCA 90 bp TTGCTGACTTCCCGTCAGAGAAAAAGCTGCAATCACAGTCAACAGAAGGAAACCACTGGATGGCAGGTTTaGAACTCCCTGAAGCCTTGG +
Preference number: 4 (lower is better)
Translates to: LLTSRQRKSCNHSQQKETTGWQV*NSLKPW
Trigger: CCAAGGCTTCAGGGAGTTCCAAACCTGCCATCCAGT...GGTTTCCTTCTGTTGACTGTGATTGCAGCTTTTTCTCTGACGGGAAGTCAGCAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR TCA 90 bp CTTAGGGAAACAGGGACTACAATGGTTAGCGCCTTCAGCCCACACAGAGCAGAGTTCCAGAGATCTTTGTaGACATCTCCAAACAAGAAC +
Preference number: 4 (lower is better)
Translates to: LRETGTTMVSAFSPHRAEFQRSL*TSPNKN
Trigger: GTTCTTGTTTGGAGATGTTCACAAAGATCTCTGGAA...CTCTGCTCTGTGTGGGCTGAAGGCGCTAACCATTGTAGTCCCTGTTTCCCTAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102985.8
CDS-3UTR TCA 90 bp GTCAACCAGGAAAAAGGACAGCACAGAGCCAATCTCTTGCTTTTCAGAGCCACATTGGTCAGCGTGGTTTaGACCTTCTTCTTAGGAGCA +
Preference number: 4 (lower is better)
Translates to: VNQEKGQHRANLLLFRATLVSVV*TFFLGA
Trigger: TGCTCCTAAGAAGAAGGTTCAAACCACGCTGACCAA...TGTGGCTCTGAAAAGCAAGAGATTGGCTCTGTGCTGTCCTTTTTCCTGGTTGAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR GCA 90 bp TATCAAGCACTTCTTTCTCACAGAGTCAACCAGGAAAAAGGACAGCACAGAGCCCCTATGACGGTCCCTTaGTCTGTCTTCCAGAGATCT +
Preference number: 4 (lower is better)
Translates to: YQALLSHRVNQEKGQHRAPMTVP*SVFQRS
Trigger: AGATCTCTGGAAGACAGAGCAAGGGACCGTCATAGG...GGCTCTGTGCTGTCCTTTTTCCTGGTTGACTCTGTGAGAAAGAAGTGCTTGATA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR GCA 90 bp TTGCTGACTTCCCGTCAGAGAAAAAGCTGCAATCACAGTCAACAGAAGGAAACCCCAGAGAAAGTGGACTaGAGATCAGTCCTCTTTGCG +
Preference number: 4 (lower is better)
Translates to: LLTSRQRKSCNHSQQKETPEKVD*RSVLFA
Trigger: CGCAAAGAGGACTGATCTGCAGTCCACTTTCTCTGG...GGTTTCCTTCTGTTGACTGTGATTGCAGCTTTTTCTCTGACGGGAAGTCAGCAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR GCA 90 bp ACAATAGTAAGCACACCTGTAGGCCTACCCAGAGTCCTGGGTTCTGTCTGTGTAAGCATCTGTTGTTTCTaGTGCTTCAAGAGGGCTGAT +
Preference number: 4 (lower is better)
Translates to: TIVSTPVGLPRVLGSVCVSICCF*CFKRAD
Trigger: ATCAGCCCTCTTGAAGCAGCAGAAACAACAGATGCT...TACACAGACAGAACCCAGGACTCTGGGTAGGCCTACAGGTGTGCTTACTATTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102985.8
CDS-3UTR GCA 90 bp CTCTCCTCACCCCTGAATATTCTGGGAAACCATACACACACAGACACACACACACAGGAGAAACTGTGTTaGTATTCTCCACACGCTCCT +
Preference number: 4 (lower is better)
Translates to: LSSPLNILGNHTHTDTHTQEKLC*YSPHAP
Trigger: AGGAGCGTGTGGAGAATAGCAACACAGTTTCTCCTG...TGTGTGTGTGTCTGTGTGTGTATGGTTTCCCAGAATATTCAGGGGTGAGGAGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102985.8
CDS-3UTR CCA 90 bp GACAGGACCAGCATTCACATGGGTCAAATACCGTTAGAAAACAGTTTGTCCAGCTGGCTTTGGGTAAAGTaGGGACATCAAGCTCTGCAG +
Preference number: 4 (lower is better)
Translates to: DRTSIHMGQIPLENSLSSWLWVK*GHQALQ
Trigger: CTGCAGAGCTTGATGTCCCCACTTTACCCAAAGCCA...GCTGGACAAACTGTTTTCTAACGGTATTTGACCCATGTGAATGCTGGTCCTGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102985.8
CDS-3UTR CCA 90 bp TGGTTATCAAGCACTTCTTTCTCACAGAGTCAACCAGGAAAAAGGACAGCACAGCCCGGACAACCAGATTaGTCAGCGTGGTTTGAACCT +
Preference number: 4 (lower is better)
Translates to: WLSSTSFSQSQPGKRTAQPGQPD*SAWFEP
Trigger: AGGTTCAAACCACGCTGACCAATCTGGTTGTCCGGG...CTGTGCTGTCCTTTTTCCTGGTTGACTCTGTGAGAAAGAAGTGCTTGATAACCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CCA 90 bp GCTCTCTTGTCTCTCGTGCCCACGTTAACACCTGAAGGAGACACAGAGGCAAAGTTTTGTTTTGTTTCCTaGATGATCGAGTTTGTGCCC +
Preference number: 4 (lower is better)
Translates to: ALLSLVPTLTPEGDTEAKFCFVS*MIEFVP
Trigger: GGGCACAAACTCGATCATCCAGGAAACAAAACAAAA...CTTTGCCTCTGTGTCTCCTTCAGGTGTTAACGTGGGCACGAGAGACAAGAGAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CCA 90 bp ACAATAGTAAGCACACCTGTAGGCCTACCCAGAGTCCTGGGTTCTGTCTGTGTACAGGACAAGCTCTTCTaGGGAATACCAAGCTTTTGT +
Preference number: 4 (lower is better)
Translates to: TIVSTPVGLPRVLGSVCVQDKLF*GIPSFC
Trigger: ACAAAAGCTTGGTATTCCCCAGAAGAGCTTGTCCTG...TACACAGACAGAACCCAGGACTCTGGGTAGGCCTACAGGTGTGCTTACTATTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102985.8
CDS-3UTR CCA 90 bp GCACTTCTTTCTCACAGAGTCAACCAGGAAAAAGGACAGCACAGAGCCAATCTCGCTTTTGTAAGTTTCTaGCTCCAAATGTGGGCAGGG +
Preference number: 4 (lower is better)
Translates to: ALLSHRVNQEKGQHRANLAFVSF*LQMWAG
Trigger: CCCTGCCCACATTTGGAGCCAGAAACTTACAAAAGC...GAGATTGGCTCTGTGCTGTCCTTTTTCCTGGTTGACTCTGTGAGAAAGAAGTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR TCA 90 bp AACTTTTCTCCATACGAAGGAACTGAGTCACAAACTGGCTTGCTGACTTCCCGTCTTCTGTATGTCTTCTaGTCTCCTCTTCCGCATCTC +
Preference number: 4 (lower is better)
Translates to: NFSPYEGTESQTGLLTSRLLYVF*SPLPHL
Trigger: GAGATGCGGAAGAGGAGATCAGAAGACATACAGAAG...ACGGGAAGTCAGCAAGCCAGTTTGTGACTCAGTTCCTTCGTATGGAGAAAAGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR GCA 90 bp GAGACCCATGCCATGTTAGCTCTCTTGTCTCTCGTGCCCACGTTAACACCTGAATTCTTTAATTCATCTTaGAGCTCCTCGCTGGTTTTC +
Preference number: 4 (lower is better)
Translates to: ETHAMLALLSLVPTLTPEFFNSS*SSSLVF
Trigger: GAAAACCAGCGAGGAGCTGCAAGATGAATTAAAGAA...TTCAGGTGTTAACGTGGGCACGAGAGACAAGAGAGCTAACATGGCATGGGTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR GCA 90 bp AGCTGGTTTCTGAGTCACGTTTCACAGCCTCTCAAGTTGTACATTTGCTTTTATGAATCAGGTGGTTCCTaGAAGGGTGCTGTCCCTGGA +
Preference number: 4 (lower is better)
Translates to: SWFLSHVSQPLKLYICFYESGGS*KGAVPG
Trigger: TCCAGGGACAGCACCCTTGCAGGAACCACCTGATTC...ATAAAAGCAAATGTACAACTTGAGAGGCTGTGAAACGTGACTCAGAAACCAGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102985.8
CDS-3UTR GCA 90 bp GCGGACTTCAGGTACATCACTCTCCAGATTAGTCCTAAGCCTTTAGTTCTTACTCCTATGACGGTCCCTTaGTCTGTCTTCCAGAGATCT +
Preference number: 4 (lower is better)
Translates to: ADFRYITLQISPKPLVLTPMTVP*SVFQRS
Trigger: AGATCTCTGGAAGACAGAGCAAGGGACCGTCATAGG...AGTAAGAACTAAAGGCTTAGGACTAATCTGGAGAGTGATGTACCTGAAGTCCGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102985.8
CDS-3UTR GCA 90 bp AAAGTTCTTGAGTCACCTTTCAGTTCTGGGGCAGGCATCTGTGACTCAAGGAAACAGATCAGTCCTCTTTaGGCTGAGCTTCTTGTACTG +
Preference number: 4 (lower is better)
Translates to: KVLESPFSSGAGICDSRKQISPL*AELLVL
Trigger: CAGTACAAGAAGCTCAGCGCAAAGAGGACTGATCTG...TTTCCTTGAGTCACAGATGCCTGCCCCAGAACTGAAAGGTGACTCAAGAACTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR GCA 90 bp GAGACCCATGCCATGTTAGCTCTCTTGTCTCTCGTGCCCACGTTAACACCTGAATTCAGGATGTCTGTGTaGTTGGACTTTGCTTTTAGA +
Preference number: 4 (lower is better)
Translates to: ETHAMLALLSLVPTLTPEFRMSV*LDFAFR
Trigger: TCTAAAAGCAAAGTCCAAGCACACAGACATCCTGAA...TTCAGGTGTTAACGTGGGCACGAGAGACAAGAGAGCTAACATGGCATGGGTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR GCA 90 bp GGGTGGAGAGAACCACCAGTGAGCCTTACTATTTTCTTTATTGAGTTTAGAAACTTCAGAAACTTGGCGTaGTCTTCCCCTCTCGGCAGC +
Preference number: 4 (lower is better)
Translates to: GWREPPVSLTIFFIEFRNFRNLA*SSPLGS
Trigger: GCTGCCGAGAGGGGAAGAGCACGCCAAGTTTCTGAA...GTTTCTAAACTCAATAAAGAAAATAGTAAGGCTCACTGGTGGTTCTCTCCACCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102985.8
CDS-3UTR CCA 90 bp TTGCTGACTTCCCGTCAGAGAAAAAGCTGCAATCACAGTCAACAGAAGGAAACCAACTCCCTGAAGCCTTaGCTCTGGCTAGATGCTTTT +
Preference number: 4 (lower is better)
Translates to: LLTSRQRKSCNHSQQKETNSLKP*LWLDAF
Trigger: AAAAGCATCTAGCCAGAGCCAAGGCTTCAGGGAGTT...GGTTTCCTTCTGTTGACTGTGATTGCAGCTTTTTCTCTGACGGGAAGTCAGCAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CCA 90 bp GTCAACCAGGAAAAAGGACAGCACAGAGCCAATCTCTTGCTTTTCAGAGCCACAATTTCACTTCCCGGGTaGCTCTCATCTTTTCTTCCA +
Preference number: 4 (lower is better)
Translates to: VNQEKGQHRANLLLFRATISLPG*LSSFLP
Trigger: TGGAAGAAAAGATGAGAGCCACCCGGGAAGTGAAAT...TGTGGCTCTGAAAAGCAAGAGATTGGCTCTGTGCTGTCCTTTTTCCTGGTTGAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR TCA 90 bp CTCTCCTCACCCCTGAATATTCTGGGAAACCATACACACACAGACACACACACAATCTTCTCCTTGATCTaGGGCAGTCTGATTAGTTTC +
Preference number: 4 (lower is better)
Translates to: LSSPLNILGNHTHTDTHTIFSLI*GSLISF
Trigger: GAAACTAATCAGACTGCCTCAGATCAAGGAGAAGAT...TGTGTGTGTGTCTGTGTGTGTATGGTTTCCCAGAATATTCAGGGGTGAGGAGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102985.8
CDS-3UTR TCA 90 bp AATATTCTGGGAAACCATACACACACAGACACACACACACATGATGAACACAAACAGTCCTCTTTGCGCTaGGCTTCTTGTACTGGGCCT +
Preference number: 4 (lower is better)
Translates to: NILGNHTHTDTHTHDEHKQSSLR*ASCTGP
Trigger: AGGCCCAGTACAAGAAGCTCAGCGCAAAGAGGACTG...TTTGTGTTCATCATGTGTGTGTGTGTCTGTGTGTGTATGGTTTCCCAGAATATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102985.8
CDS-3UTR GCA 90 bp TATCAAGCACTTCTTTCTCACAGAGTCAACCAGGAAAAAGGACAGCACAGAGCCATCTGTTGTTTCTGCTaGTTCAAGAGGGCTGATGCT +
Preference number: 4 (lower is better)
Translates to: YQALLSHRVNQEKGQHRAICCFC*FKRADA
Trigger: AGCATCAGCCCTCTTGAAGCAGCAGAAACAACAGAT...GGCTCTGTGCTGTCCTTTTTCCTGGTTGACTCTGTGAGAAAGAAGTGCTTGATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CCA 90 bp AGCTGGTTTCTGAGTCACGTTTCACAGCCTCTCAAGTTGTACATTTGCTTTTATGTCCCCCAGAGAAAGTaGACTGCAGATCAGTCCTCT +
Preference number: 4 (lower is better)
Translates to: SWFLSHVSQPLKLYICFYVPQRK*TADQSS
Trigger: AGAGGACTGATCTGCAGTCCACTTTCTCTGGGGGAC...ATAAAAGCAAATGTACAACTTGAGAGGCTGTGAAACGTGACTCAGAAACCAGCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102985.8
CDS-3UTR CCA 90 bp TATCAAGCACTTCTTTCTCACAGAGTCAACCAGGAAAAAGGACAGCACAGAGCCCTGAAGCCTTGGCTCTaGCTAGATGCTTTTGTAAGT +
Preference number: 4 (lower is better)
Translates to: YQALLSHRVNQEKGQHRALKPWL*LDAFVS
Trigger: ACTTACAAAAGCATCTAGCCAGAGCCAAGGCTTCAG...GGCTCTGTGCTGTCCTTTTTCCTGGTTGACTCTGTGAGAAAGAAGTGCTTGATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
3UTR CAA 72 bp TTTTCTCCATACGAAGGAACTGAGTCACAAACTGGCTaGCTGACTTCCCGTCAGAGAAAAAGCTGCAATCAC +
Preference number: 4 (lower is better)
Translates to: FSPYEGTESQTG*LTSRQRKSCNH
Trigger: GTGATTGCAGCTTTTTCTCTGACGGGAAGTCAGCAAGCCAGTTTGTGACTCAGTTCCTTCGTATGGAGAAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR GCA 90 bp CTCTCCTCACCCCTGAATATTCTGGGAAACCATACACACACAGACACACACACAGATGCAGCTTTTAGCTaGTCCTGTAAGGATTTCATT +
Preference number: 4 (lower is better)
Translates to: LSSPLNILGNHTHTDTHTDAAFS*SCKDFI
Trigger: AATGAAATCCTTACAGGAGCAGCTAAAAGCTGCATC...TGTGTGTGTGTCTGTGTGTGTATGGTTTCCCAGAATATTCAGGGGTGAGGAGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102985.8
CDS-3UTR GCA 90 bp GACAGGACCAGCATTCACATGGGTCAAATACCGTTAGAAAACAGTTTGTCCAGCTTGGCTCTGGCTAGATaGTTTTGTAAGTTTCTGGCT +
Preference number: 4 (lower is better)
Translates to: DRTSIHMGQIPLENSLSSLALAR*FCKFLA
Trigger: AGCCAGAAACTTACAAAAGCATCTAGCCAGAGCCAA...GCTGGACAAACTGTTTTCTAACGGTATTTGACCCATGTGAATGCTGGTCCTGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102985.8
CDS-3UTR GCA 90 bp CATGGTTATCAAGCACTTCTTTCTCACAGAGTCAACCAGGAAAAAGGACAGCACCTTTTTAGCTTCTGCTaGTGCGCTCAGTTTTGGTCT +
Preference number: 4 (lower is better)
Translates to: HGYQALLSHRVNQEKGQHLFSFC*CAQFWS
Trigger: AGACCAAAACTGAGCGCAGCAGCAGAAGCTAAAAAG...GTGCTGTCCTTTTTCCTGGTTGACTCTGTGAGAAAGAAGTGCTTGATAACCATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR GCA 90 bp TTGCTGACTTCCCGTCAGAGAAAAAGCTGCAATCACAGTCAACAGAAGGAAACCGCTCGGCCATCCATTTaGTTCCTTACAGTATTGTTT +
Preference number: 4 (lower is better)
Translates to: LLTSRQRKSCNHSQQKETARPSI*FLTVLF
Trigger: AAACAATACTGTAAGGAAGCAAATGGATGGCCGAGC...GGTTTCCTTCTGTTGACTGTGATTGCAGCTTTTTCTCTGACGGGAAGTCAGCAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CCA 90 bp GTCAACCAGGAAAAAGGACAGCACAGAGCCAATCTCTTGCTTTTCAGAGCCACAGGATGTCTGTGTGCTTaGACTTTGCTTTTAGAATCT +
Preference number: 4 (lower is better)
Translates to: VNQEKGQHRANLLLFRATGCLCA*TLLLES
Trigger: AGATTCTAAAAGCAAAGTCCAAGCACACAGACATCC...TGTGGCTCTGAAAAGCAAGAGATTGGCTCTGTGCTGTCCTTTTTCCTGGTTGAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR TCA 90 bp CATGGTTATCAAGCACTTCTTTCTCACAGAGTCAACCAGGAAAAAGGACAGCACATCTTCTCCTTGATCTaGGGCAGTCTGATTAGTTTC +
Preference number: 4 (lower is better)
Translates to: HGYQALLSHRVNQEKGQHIFSLI*GSLISF
Trigger: GAAACTAATCAGACTGCCTCAGATCAAGGAGAAGAT...GTGCTGTCCTTTTTCCTGGTTGACTCTGTGAGAAAGAAGTGCTTGATAACCATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR GCA 90 bp AACTTTTCTCCATACGAAGGAACTGAGTCACAAACTGGCTTGCTGACTTCCCGTTTCTTTAATTCATCTTaGAGCTCCTCGCTGGTTTTC +
Preference number: 4 (lower is better)
Translates to: NFSPYEGTESQTGLLTSRFFNSS*SSSLVF
Trigger: GAAAACCAGCGAGGAGCTGCAAGATGAATTAAAGAA...ACGGGAAGTCAGCAAGCCAGTTTGTGACTCAGTTCCTTCGTATGGAGAAAAGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CCA 90 bp TGGAGAGAACCACCAGTGAGCCTTACTATTTTCTTTATTGAGTTTAGAAACCAACCCGGACAACCAGATTaGTCAGCGTGGTTTGAACCT +
Preference number: 4 (lower is better)
Translates to: WREPPVSLTIFFIEFRNQPGQPD*SAWFEP
Trigger: AGGTTCAAACCACGCTGACCAATCTGGTTGTCCGGG...TTGGTTTCTAAACTCAATAAAGAAAATAGTAAGGCTCACTGGTGGTTCTCTCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102985.8
CDS-3UTR CCA 90 bp GGGTGGAGAGAACCACCAGTGAGCCTTACTATTTTCTTTATTGAGTTTAGAAACGCTTTTGTAAGTTTCTaGCTCCAAATGTGGGCAGGG +
Preference number: 4 (lower is better)
Translates to: GWREPPVSLTIFFIEFRNAFVSF*LQMWAG
Trigger: CCCTGCCCACATTTGGAGCCAGAAACTTACAAAAGC...GTTTCTAAACTCAATAAAGAAAATAGTAAGGCTCACTGGTGGTTCTCTCCACCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102985.8
CDS-3UTR CCA 90 bp TATCAAGCACTTCTTTCTCACAGAGTCAACCAGGAAAAAGGACAGCACAGAGCCGGATGTCTGTGTGCTTaGACTTTGCTTTTAGAATCT +
Preference number: 4 (lower is better)
Translates to: YQALLSHRVNQEKGQHRAGCLCA*TLLLES
Trigger: AGATTCTAAAAGCAAAGTCCAAGCACACAGACATCC...GGCTCTGTGCTGTCCTTTTTCCTGGTTGACTCTGTGAGAAAGAAGTGCTTGATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR TCA 90 bp AAAGGCAGGATTAAAAGGTTAGTTCCATTAATGAATATTTTCAAGGCCCATGGGTACTGGGCCTGGATGTaGTACTGGCAGTATTCACAG +
Preference number: 4 (lower is better)
Translates to: KGRIKRLVPLMNIFKAHGYWAWM*YWQYSQ
Trigger: CTGTGAATACTGCCAGTATCACATCCAGGCCCAGTA...CCCATGGGCCTTGAAAATATTCATTAATGGAACTAACCTTTTAATCCTGCCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102985.8
CDS-3UTR GCA 90 bp TGGAGAGAACCACCAGTGAGCCTTACTATTTTCTTTATTGAGTTTAGAAACCAACCAGAGAAAGTGGACTaGAGATCAGTCCTCTTTGCG +
Preference number: 4 (lower is better)
Translates to: WREPPVSLTIFFIEFRNQPEKVD*RSVLFA
Trigger: CGCAAAGAGGACTGATCTGCAGTCCACTTTCTCTGG...TTGGTTTCTAAACTCAATAAAGAAAATAGTAAGGCTCACTGGTGGTTCTCTCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102985.8
CDS-3UTR GCA 90 bp AAAGGCAGGATTAAAAGGTTAGTTCCATTAATGAATATTTTCAAGGCCCATGGGTCCTTAAGCAGTGGCTaGAGAGATGAATCAGGTGGT +
Preference number: 4 (lower is better)
Translates to: KGRIKRLVPLMNIFKAHGSLSSG*RDESGG
Trigger: ACCACCTGATTCATCTCTGCAGCCACTGCTTAAGGA...CCCATGGGCCTTGAAAATATTCATTAATGGAACTAACCTTTTAATCCTGCCTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102985.8
CDS-3UTR CCA 90 bp TGGAGAGAACCACCAGTGAGCCTTACTATTTTCTTTATTGAGTTTAGAAACCAAGTCCCCAGAATTCCCTaGGGACACTGTGTTTTGATT +
Preference number: 4 (lower is better)
Translates to: WREPPVSLTIFFIEFRNQVPRIP*GHCVLI
Trigger: AATCAAAACACAGTGTCCCCAGGGAATTCTGGGGAC...TTGGTTTCTAAACTCAATAAAGAAAATAGTAAGGCTCACTGGTGGTTCTCTCCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000102985.8
CDS-3UTR TCA 90 bp GGGTGGAGAGAACCACCAGTGAGCCTTACTATTTTCTTTATTGAGTTTAGAAACGCTTTTAGAATCTTCTaGAATTCCTCGGACTCTAAG +
Preference number: 4 (lower is better)
Translates to: GWREPPVSLTIFFIEFRNAFRIF*NSSDSK
Trigger: CTTAGAGTCCGAGGAATTTCAGAAGATTCTAAAAGC...GTTTCTAAACTCAATAAAGAAAATAGTAAGGCTCACTGGTGGTTCTCTCCACCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102985.8
CDS CCA 90 bp GCAGTTCCTTCCAACCTGGGGAACTCAGCCCCAGTTCGAGGAGACTaGGCAGCAGCCTGTCGAGAGGAAGACGGCACTGCTGGGCTCTGG +
Preference number: 5 (lower is better)
Translates to: AVPSNLGNSAPVRGD*AAACREEDGTAGLW
Trigger: CCAGAGCCCAGCAGTGCCGTCTTCCTCTCGACAGGCTGCTGCCCAGTCTCCTCGAACTGGGGCTGAGTTCCCCAGGTTGGAAGGAACTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CCA 90 bp CTCTGCCCAGCTTGGGCATCCGTGGGGTTGCAGTTCCTTCCAACCTaGGGAACTCAGCCCCAGTTCGAGGAGACTGGGCAGCAGCCTGTC +
Preference number: 5 (lower is better)
Translates to: LCPAWASVGLQFLPT*GTQPQFEETGQQPV
Trigger: GACAGGCTGCTGCCCAGTCTCCTCGAACTGGGGCTGAGTTCCCCAGGTTGGAAGGAACTGCAACCCCACGGATGCCCAAGCTGGGCAGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CAA 90 bp GCACAGAGCCAATCTCTTGCTTTTCAGAGCCACAGGAGTAAGGCCGGTTGGGCGCTCGCTGGTTTTCTCTaGGCTGGGAGCAGGAGGGGG +
Preference number: 5 (lower is better)
Translates to: AQSQSLAFQSHRSKAGWALAGFL*AGSRRG
Trigger: CCCCCTCCTGCTCCCAGCCAAGAGAAAACCAGCGAG...CGCCCAACCGGCCTTACTCCTGTGGCTCTGAAAAGCAAGAGATTGGCTCTGTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CAA 90 bp GCACAGAGCCAATCTCTTGCTTTTCAGAGCCACAGGAGTAAGGCCGGTTGGGCGATGCCTCTGCCCAGCTaGGGCATCCGTGGGGTTGCA +
Preference number: 5 (lower is better)
Translates to: AQSQSLAFQSHRSKAGWAMPLPS*GIRGVA
Trigger: TGCAACCCCACGGATGCCCAAGCTGGGCAGAGGCAT...CGCCCAACCGGCCTTACTCCTGTGGCTCTGAAAAGCAAGAGATTGGCTCTGTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS TCA 90 bp CTGCCATCTTCCTGCTCATTTCTGTGGAGGAGACTCGAGGTCGCCTaGGGCGTAGGCCTGAGAAGGCTTCCACAGAGACCTGGGAAACCT +
Preference number: 5 (lower is better)
Translates to: LPSSCSFLWRRLEVA*GVGLRRLPQRPGKP
Trigger: AGGTTTCCCAGGTCTCTGTGGAAGCCTTCTCAGGCCTACGCCTCAGGCGACCTCGAGTCTCCTCCACAGAAATGAGCAGGAAGATGGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS TCA 90 bp ATGATCGAGTTTGTGCCCCGGACAACCAGATTGGTCAGCGTGGTTTaGACCTTCTTCTTAGGAGCAATGGCCGCCGCCCTGGACGCTGCG +
Preference number: 5 (lower is better)
Translates to: MIEFVPRTTRLVSVV*TFFLGAMAAALDAA
Trigger: CGCAGCGTCCAGGGCGGCGGCCATTGCTCCTAAGAAGAAGGTTCAAACCACGCTGACCAATCTGGTTGTCCGGGGCACAAACTCGATCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CAA 90 bp CACAGAGCCAATCTCTTGCTTTTCAGAGCCACAGGAGTAAGGCCGGTTGGGCGGACTCTGCAGGAGTCTTaGGCTTCCGAGCAACCCGCT +
Preference number: 5 (lower is better)
Translates to: HRANLLLFRATGVRPVGRTLQES*ASEQPA
Trigger: AGCGGGTTGCTCGGAAGCCAAAGACTCCTGCAGAGT...CCGCCCAACCGGCCTTACTCCTGTGGCTCTGAAAAGCAAGAGATTGGCTCTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CAA 90 bp AGGAAACCCTGGTACCCAGTGTCAGTAGATCCAGACTACACAGAGGCAGCGCTATGGGCATCCGTGGGGTaGCAGTTCCTTCCAACCTGG +
Preference number: 5 (lower is better)
Translates to: RKPWYPVSVDPDYTEAALWASVG*QFLPTW
Trigger: CCAGGTTGGAAGGAACTGCAACCCCACGGATGCCCA...TAGCGCTGCCTCTGTGTAGTCTGGATCTACTGACACTGGGTACCAGGGTTTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS GCA 90 bp CCTTTGCGGAACTTCTTCGGAATCCGTCCCCCAGAGAAAGTGGACTaGAGATCAGTCCTCTTTGCGCTGAGCTTCTTGTACTGGGCCTGG +
Preference number: 5 (lower is better)
Translates to: PLRNFFGIRPPEKVD*RSVLFALSFLYWAW
Trigger: CCAGGCCCAGTACAAGAAGCTCAGCGCAAAGAGGACTGATCTGCAGTCCACTTTCTCTGGGGGACGGATTCCGAAGAAGTTCCGCAAAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS GCA 90 bp CACCATAGTAGAAACCATCTTGGCACAGCCGCTCCTTCAGGCTGGTaGCTTTGCGGAACTTCTTCGGAATCCGTCCCCCAGAGAAAGTGG +
Preference number: 5 (lower is better)
Translates to: HHSRNHLGTAAPSGW*LCGTSSESVPQRKW
Trigger: CCACTTTCTCTGGGGGACGGATTCCGAAGAAGTTCCGCAAAGGCACCAGCCTGAAGGAGCGGCTGTGCCAAGATGGTTTCTACTATGGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS GCA 90 bp GTCCTGTTTCCACAGGGACATTTGAAAAACCTCTTCACGCCGTCGTaGCAGTGGAGGTTATGCTGCTCGCTGACACAGGTCTCCAGAGGC +
Preference number: 5 (lower is better)
Translates to: VLFPQGHLKNLFTPS*QWRLCCSLTQVSRG
Trigger: GCCTCTGGAGACCTGTGTCAGCGAGCAGCATAACCTCCACTGGCACGACGGCGTGAAGAGGTTTTTCAAATGTCCCTGTGGAAACAGGAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CCA 90 bp CACCACCATAGTAGAAACCATCTTGGCACAGCCGCTCCTTCAGGCTaGTGCCTTTGCGGAACTTCTTCGGAATCCGTCCCCCAGAGAAAG +
Preference number: 5 (lower is better)
Translates to: HHHSRNHLGTAAPSG*CLCGTSSESVPQRK
Trigger: CTTTCTCTGGGGGACGGATTCCGAAGAAGTTCCGCAAAGGCACCAGCCTGAAGGAGCGGCTGTGCCAAGATGGTTTCTACTATGGTGGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CCA 90 bp GACTGGGCAGCAGCCTGTCGAGAGGAAGACGGCACTGCTGGGCTCTaGACTTCACTTGAGCTTTGGAGGAATCGCTTCTGTATGTCTTCT +
Preference number: 5 (lower is better)
Translates to: DWAAACREEDGTAGL*TSLELWRNRFCMSS
Trigger: AGAAGACATACAGAAGCGATTCCTCCAAAGCTCAAGTGAAGTCCAGAGCCCAGCAGTGCCGTCTTCCTCTCGACAGGCTGCTGCCCAGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CAA 90 bp AGGAAACCCTGGTACCCAGTGTCAGTAGATCCAGACTACACAGAGGCAGCGCTAACTCTGCAGGAGTCTTaGGCTTCCGAGCAACCCGCT +
Preference number: 5 (lower is better)
Translates to: RKPWYPVSVDPDYTEAALTLQES*ASEQPA
Trigger: AGCGGGTTGCTCGGAAGCCAAAGACTCCTGCAGAGT...TAGCGCTGCCTCTGTGTAGTCTGGATCTACTGACACTGGGTACCAGGGTTTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS GCA 90 bp CGGAATCCGTCCCCCAGAGAAAGTGGACTGCAGATCAGTCCTCTTTaGGCTGAGCTTCTTGTACTGGGCCTGGATGTGATACTGGCAGTA +
Preference number: 5 (lower is better)
Translates to: RNPSPRESGLQISPL*AELLVLGLDVILAV
Trigger: TACTGCCAGTATCACATCCAGGCCCAGTACAAGAAGCTCAGCGCAAAGAGGACTGATCTGCAGTCCACTTTCTCTGGGGGACGGATTCCG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS GCA 90 bp GTGAATCATCAAAGAAGAGAACATCGTCCCCTTCTGAGATGCCTCTaGCCAGCTTGGGCATCCGTGGGGTTGCAGTTCCTTCCAACCTGG +
Preference number: 5 (lower is better)
Translates to: VNHQRREHRPLLRCL*PAWASVGLQFLPTW
Trigger: CCAGGTTGGAAGGAACTGCAACCCCACGGATGCCCAAGCTGGGCAGAGGCATCTCAGAAGGGGACGATGTTCTCTTCTTTGATGATTCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS GCA 90 bp GTGGTGGTGAATCATCAAAGAAGAGAACATCGTCCCCTTCTGAGATaGCTCTGCCCAGCTTGGGCATCCGTGGGGTTGCAGTTCCTTCCA +
Preference number: 5 (lower is better)
Translates to: VVVNHQRREHRPLLR*LCPAWASVGLQFLP
Trigger: TGGAAGGAACTGCAACCCCACGGATGCCCAAGCTGGGCAGAGGCATCTCAGAAGGGGACGATGTTCTCTTCTTTGATGATTCACCACCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CAA 90 bp GTCAACCAGGAAAAAGGACAGCACAGAGCCAATCTCTTGCTTTTCAGAGCCACACTCGCTGGTTTTCTCTaGGCTGGGAGCAGGAGGGGG +
Preference number: 5 (lower is better)
Translates to: VNQEKGQHRANLLLFRATLAGFL*AGSRRG
Trigger: CCCCCTCCTGCTCCCAGCCAAGAGAAAACCAGCGAG...TGTGGCTCTGAAAAGCAAGAGATTGGCTCTGTGCTGTCCTTTTTCCTGGTTGAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CAA 90 bp AGTCACCTTTCAGTTCTGGGGCAGGCATCTGTGACTCAAGGAAAAGCCGCAGTGGCAACCCGCTTGGCTTaGGGTAAAGTGGGGACATCA +
Preference number: 5 (lower is better)
Translates to: SHLSVLGQASVTQGKAAVATRLA*GKVGTS
Trigger: TGATGTCCCCACTTTACCCAAAGCCAAGCGGGTTGC...CACTGCGGCTTTTCCTTGAGTCACAGATGCCTGCCCCAGAACTGAAAGGTGACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CAA 90 bp GAAATAAAGGCACCCACACTCAGGTCCCCAGAGCTCTGTAAGCACCTGGACATCGCCTATGACGGTCCCTaGCTCTGTCTTCCAGAGATC +
Preference number: 5 (lower is better)
Translates to: EIKAPTLRSPELCKHLDIAYDGP*LCLPEI
Trigger: GATCTCTGGAAGACAGAGCAAGGGACCGTCATAGGC...GATGTCCAGGTGCTTACAGAGCTCTGGGGACCTGAGTGTGGGTGCCTTTATTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102985.8
CDS-3UTR CAA 90 bp GCACAGAGCCAATCTCTTGCTTTTCAGAGCCACAGGAGTAAGGCCGGTTGGGCGTCTCCATTCTTCTTCTaGGCTTTACAGGCTCCCAGG +
Preference number: 5 (lower is better)
Translates to: AQSQSLAFQSHRSKAGWASPFFF*ALQAPR
Trigger: CCTGGGAGCCTGTAAAGCCAAGAAGAAGAATGGAGA...CGCCCAACCGGCCTTACTCCTGTGGCTCTGAAAAGCAAGAGATTGGCTCTGTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CAA 90 bp AGTCACCTTTCAGTTCTGGGGCAGGCATCTGTGACTCAAGGAAAAGCCGCAGTGTACGGCAGTGCTTGTTaGGGAGCTTGTCCAGGGAGA +
Preference number: 5 (lower is better)
Translates to: SHLSVLGQASVTQGKAAVYGSAC*GACPGR
Trigger: TCTCCCTGGACAAGCTCCCAAACAAGCACTGCCGTA...CACTGCGGCTTTTCCTTGAGTCACAGATGCCTGCCCCAGAACTGAAAGGTGACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS TCA 90 bp TCCGTCCCCCAGAGAAAGTGGACTGCAGATCAGTCCTCTTTGCGCTaGGCTTCTTGTACTGGGCCTGGATGTGATACTGGCAGTATTCAC +
Preference number: 5 (lower is better)
Translates to: SVPQRKWTADQSSLR*ASCTGPGCDTGSIH
Trigger: GTGAATACTGCCAGTATCACATCCAGGCCCAGTACAAGAAGCTCAGCGCAAAGAGGACTGATCTGCAGTCCACTTTCTCTGGGGGACGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS TCA 90 bp TTGGGAGCTTGTCCAGGGAGATGGTCCTGTTTCCACAGGGACATTTaGAAAACCTCTTCACGCCGTCGTGCCAGTGGAGGTTATGCTGCT +
Preference number: 5 (lower is better)
Translates to: LGACPGRWSCFHRDI*KTSSRRRASGGYAA
Trigger: AGCAGCATAACCTCCACTGGCACGACGGCGTGAAGAGGTTTTTCAAATGTCCCTGTGGAAACAGGACCATCTCCCTGGACAAGCTCCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CCA 90 bp CAGGAGTCTTTGGCTTCCGAGCAACCCGCTTGGCTTTGGGTAAAGTaGGGACATCAAGCTCTGCAGAAAAGCACGCTGACTCCTGAATTC +
Preference number: 5 (lower is better)
Translates to: QESLASEQPAWLWVK*GHQALQKSTLTPEF
Trigger: GAATTCAGGAGTCAGCGTGCTTTTCTGCAGAGCTTGATGTCCCCACTTTACCCAAAGCCAAGCGGGTTGCTCGGAAGCCAAAGACTCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CCA 90 bp ATGACTCTGCAGGAGTCTTTGGCTTCCGAGCAACCCGCTTGGCTTTaGGTAAAGTGGGGACATCAAGCTCTGCAGAAAAGCACGCTGACT +
Preference number: 5 (lower is better)
Translates to: MTLQESLASEQPAWL*VKWGHQALQKSTLT
Trigger: AGTCAGCGTGCTTTTCTGCAGAGCTTGATGTCCCCACTTTACCCAAAGCCAAGCGGGTTGCTCGGAAGCCAAAGACTCCTGCAGAGTCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CCA 90 bp GTTGTTTCTGCTGCTTCAAGAGGGCTGATGCTGAGATGGACTGGATaGCAGGTTTGGAACTCCCTGAAGCCTTGGCTCTGGCTAGATGCT +
Preference number: 5 (lower is better)
Translates to: VVSAASRGLMLRWTG*QVWNSLKPWLWLDA
Trigger: AGCATCTAGCCAGAGCCAAGGCTTCAGGGAGTTCCAAACCTGCCATCCAGTCCATCTCAGCATCAGCCCTCTTGAAGCAGCAGAAACAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CCA 90 bp TTTCCACAGGGACATTTGAAAAACCTCTTCACGCCGTCGTGCCAGTaGAGGTTATGCTGCTCGCTGACACAGGTCTCCAGAGGCTTGAAG +
Preference number: 5 (lower is better)
Translates to: FPQGHLKNLFTPSCQ*RLCCSLTQVSRGLK
Trigger: CTTCAAGCCTCTGGAGACCTGTGTCAGCGAGCAGCATAACCTCCACTGGCACGACGGCGTGAAGAGGTTTTTCAAATGTCCCTGTGGAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CAA 90 bp TATCAAGCACTTCTTTCTCACAGAGTCAACCAGGAAAAAGGACAGCACAGAGCCATGCCTCTGCCCAGCTaGGGCATCCGTGGGGTTGCA +
Preference number: 5 (lower is better)
Translates to: YQALLSHRVNQEKGQHRAMPLPS*GIRGVA
Trigger: TGCAACCCCACGGATGCCCAAGCTGGGCAGAGGCAT...GGCTCTGTGCTGTCCTTTTTCCTGGTTGACTCTGTGAGAAAGAAGTGCTTGATA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS GCA 90 bp CATCACCAAAGAGAGTGGCCAAACGTTCCTCCTGGTTTCCAGTCTTaGCCTCTTCTCCACTGCCAGCCTCTTCTGTGTAAGACTCACCAT +
Preference number: 5 (lower is better)
Translates to: HHQREWPNVPPGFQS*PLLHCQPLLCKTHH
Trigger: ATGGTGAGTCTTACACAGAAGAGGCTGGCAGTGGAGAAGAGGGCAAGACTGGAAACCAGGAGGAACGTTTGGCCACTCTCTTTGGTGATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS GCA 90 bp GGTTTGAACCTTCTTCTTAGGAGCAATGGCCGCCGCCCTGGACGCTaGGAAGGATTCGGAAGAAACACCACCATAGTAGAAACCATCTTG +
Preference number: 5 (lower is better)
Translates to: GLNLLLRSNGRRPGR*EGFGRNTTIVETIL
Trigger: CAAGATGGTTTCTACTATGGTGGTGTTTCTTCCGAATCCTTCGCAGCGTCCAGGGCGGCGGCCATTGCTCCTAAGAAGAAGGTTCAAACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CCA 90 bp TTGAAGATGACTCTGCAGGAGTCTTTGGCTTCCGAGCAACCCGCTTaGCTTTGGGTAAAGTGGGGACATCAAGCTCTGCAGAAAAGCACG +
Preference number: 5 (lower is better)
Translates to: LKMTLQESLASEQPA*LWVKWGHQALQKST
Trigger: CGTGCTTTTCTGCAGAGCTTGATGTCCCCACTTTACCCAAAGCCAAGCGGGTTGCTCGGAAGCCAAAGACTCCTGCAGAGTCATCTTCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CCA 90 bp GCTGCTTCAAGAGGGCTGATGCTGAGATGGACTGGATGGCAGGTTTaGAACTCCCTGAAGCCTTGGCTCTGGCTAGATGCTTTTGTAAGT +
Preference number: 5 (lower is better)
Translates to: AASRGLMLRWTGWQV*NSLKPWLWLDAFVS
Trigger: ACTTACAAAAGCATCTAGCCAGAGCCAAGGCTTCAGGGAGTTCCAAACCTGCCATCCAGTCCATCTCAGCATCAGCCCTCTTGAAGCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CCA 90 bp ATCTGTTGTTTCTGCTGCTTCAAGAGGGCTGATGCTGAGATGGACTaGATGGCAGGTTTGGAACTCCCTGAAGCCTTGGCTCTGGCTAGA +
Preference number: 5 (lower is better)
Translates to: ICCFCCFKRADAEMD*MAGLELPEALALAR
Trigger: TCTAGCCAGAGCCAAGGCTTCAGGGAGTTCCAAACCTGCCATCCAGTCCATCTCAGCATCAGCCCTCTTGAAGCAGCAGAAACAACAGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CAA 90 bp AGCACATGGAGGAAAGCGGGTAGGCACCATGGTTATCAAGCACTTCTTTCTCACTCCTGGTTTCCAGTCTaGCCCTCTTCTCCACTGCCA +
Preference number: 5 (lower is better)
Translates to: STWRKAGRHHGYQALLSHSWFPV*PSSPLP
Trigger: TGGCAGTGGAGAAGAGGGCAAGACTGGAAACCAGGA...GTGAGAAAGAAGTGCTTGATAACCATGGTGCCTACCCGCTTTCCTCCATGTGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CAA 90 bp CTGGGCTTCATGTTCCACATAAGGACTGAGCACGGAAGTGGGGAGAGACCCATGCGCTCAGTTTTGGTCTaGGTGGTGGTGAATCATCAA +
Preference number: 5 (lower is better)
Translates to: LGFMFHIRTEHGSGERPMRSVLV*VVVNHQ
Trigger: TTGATGATTCACCACCACCAAGACCAAAACTGAGCG...CATGGGTCTCTCCCCACTTCCGTGCTCAGTCCTTATGTGGAACATGAAGCCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CAA 90 bp CATGGAGGAAAGCGGGTAGGCACCATGGTTATCAAGCACTTCTTTCTCACAGAGTACGGCAGTGCTTGTTaGGGAGCTTGTCCAGGGAGA +
Preference number: 5 (lower is better)
Translates to: HGGKRVGTMVIKHFFLTEYGSAC*GACPGR
Trigger: TCTCCCTGGACAAGCTCCCAAACAAGCACTGCCGTA...CTCTGTGAGAAAGAAGTGCTTGATAACCATGGTGCCTACCCGCTTTCCTCCATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS TCA 90 bp CTGAATTCTCCGAATTCTCTTCTCCTTAAGCAGTGGCTGCAGAGATaGATCAGGTGGTTCCTGCAAGGGTGCTGTCCCTGGAGGCTGTTT +
Preference number: 5 (lower is better)
Translates to: LNSPNSLLLKQWLQR*IRWFLQGCCPWRLF
Trigger: AAACAGCCTCCAGGGACAGCACCCTTGCAGGAACCACCTGATTCATCTCTGCAGCCACTGCTTAAGGAGAAGAGAATTCGGAGAATTCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS GCA 90 bp CAGGGTCCCCGTCTCCCAGAGACAAGGACTTATCCTTTTCTGAGCTaGAAGGTAAGACTGCCTCATTCTCTTCCAGTAGAGATGTCAGGA +
Preference number: 5 (lower is better)
Translates to: QGPRLPETRTYPFLS*KVRLPHSLPVEMSG
Trigger: TCCTGACATCTCTACTGGAAGAGAATGAGGCAGTCTTACCTTGCAGCTCAGAAAAGGATAAGTCCTTGTCTCTGGGAGACGGGGACCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS GCA 90 bp ATGTCTTCTGATCTCCTCTTCCGCATCTCCAGCATCTGTTGTTTCTaGTGCTTCAAGAGGGCTGATGCTGAGATGGACTGGATGGCAGGT +
Preference number: 5 (lower is better)
Translates to: MSSDLLFRISSICCF*CFKRADAEMDWMAG
Trigger: ACCTGCCATCCAGTCCATCTCAGCATCAGCCCTCTTGAAGCAGCAGAAACAACAGATGCTGGAGATGCGGAAGAGGAGATCAGAAGACAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CCA 90 bp GTTCAGTTTCCAGATGCTAAACGTTTGCCCACTGGTAGCACTCTGTaGAGTGACCTTCCTGAGGATAACCCCAAACGTCACCCAGTCTGT +
Preference number: 5 (lower is better)
Translates to: VQFPDAKRLPTGSTL*SDLPEDNPKRHPVC
Trigger: ACAGACTGGGTGACGTTTGGGGTTATCCTCAGGAAGGTCACTCCACAGAGTGCTACCAGTGGGCAAACGTTTAGCATCTGGAAACTGAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CAA 90 bp CACAGAGCCAATCTCTTGCTTTTCAGAGCCACAGGAGTAAGGCCGGTTGGGCGGTGGGGACACTGTGTTTaGATTTCTAATTGTCCTGCT +
Preference number: 5 (lower is better)
Translates to: HRANLLLFRATGVRPVGRWGHCV*ISNCPA
Trigger: AGCAGGACAATTAGAAATCAAAACACAGTGTCCCCA...CCGCCCAACCGGCCTTACTCCTGTGGCTCTGAAAAGCAAGAGATTGGCTCTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CAA 90 bp GTCAACCAGGAAAAAGGACAGCACAGAGCCAATCTCTTGCTTTTCAGAGCCACAGCCTATGACGGTCCCTaGCTCTGTCTTCCAGAGATC +
Preference number: 5 (lower is better)
Translates to: VNQEKGQHRANLLLFRATAYDGP*LCLPEI
Trigger: GATCTCTGGAAGACAGAGCAAGGGACCGTCATAGGC...TGTGGCTCTGAAAAGCAAGAGATTGGCTCTGTGCTGTCCTTTTTCCTGGTTGAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CAA 90 bp AGTCACCTTTCAGTTCTGGGGCAGGCATCTGTGACTCAAGGAAAAGCCGCAGTGATTGGTCAGCGTGGTTaGAACCTTCTTCTTAGGAGC +
Preference number: 5 (lower is better)
Translates to: SHLSVLGQASVTQGKAAVIGQRG*NLLLRS
Trigger: GCTCCTAAGAAGAAGGTTCAAACCACGCTGACCAAT...CACTGCGGCTTTTCCTTGAGTCACAGATGCCTGCCCCAGAACTGAAAGGTGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CAA 90 bp TGGTTATCAAGCACTTCTTTCTCACAGAGTCAACCAGGAAAAAGGACAGCACAGTGGGCATCCGTGGGGTaGCAGTTCCTTCCAACCTGG +
Preference number: 5 (lower is better)
Translates to: WLSSTSFSQSQPGKRTAQWASVG*QFLPTW
Trigger: CCAGGTTGGAAGGAACTGCAACCCCACGGATGCCCA...CTGTGCTGTCCTTTTTCCTGGTTGACTCTGTGAGAAAGAAGTGCTTGATAACCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CAA 90 bp GTTGGGACATTACAGACAAGCAGCCTGGGCTTCATGTTCCACATAAGGACTGAGCTGCTGCGCTCAGTTTaGGTCTTGGTGGTGGTGAAT +
Preference number: 5 (lower is better)
Translates to: VGTLQTSSLGFMFHIRTELLRSV*VLVVVN
Trigger: ATTCACCACCACCAAGACCAAAACTGAGCGCAGCAG...CTCAGTCCTTATGTGGAACATGAAGCCCAGGCTGCTTGTCTGTAATGTCCCAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CAA 90 bp AGGACAGCACAGAGCCAATCTCTTGCTTTTCAGAGCCACAGGAGTAAGGCCGGTTTTCCACAGGGACATTaGAAAAACCTCTTCACGCCG +
Preference number: 5 (lower is better)
Translates to: RTAQSQSLAFQSHRSKAGFPQGH*KNLFTP
Trigger: CGGCGTGAAGAGGTTTTTCAAATGTCCCTGTGGAAA...ACCGGCCTTACTCCTGTGGCTCTGAAAAGCAAGAGATTGGCTCTGTGCTGTCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS TCA 90 bp TTTGTAAGTTTCTGGCTCCAAATGTGGGCAGGGCCATCAATTCCCTaGACTCCTCAGAGCAGGACAAGCTCTTCTGGGGAATACCAAGCT +
Preference number: 5 (lower is better)
Translates to: FVSFWLQMWAGPSIP*TPQSRTSSSGEYQA
Trigger: AGCTTGGTATTCCCCAGAAGAGCTTGTCCTGCTCTGAGGAGTTCAGGGAATTGATGGCCCTGCCCACATTTGGAGCCAGAAACTTACAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS GCA 90 bp CTCTTCTCCTTAAGCAGTGGCTGCAGAGATGAATCAGGTGGTTCCTaGAAGGGTGCTGTCCCTGGAGGCTGTTTAATTGATGCAGCTTTT +
Preference number: 5 (lower is better)
Translates to: LFSLSSGCRDESGGS*KGAVPGGCLIDAAF
Trigger: AAAAGCTGCATCAATTAAACAGCCTCCAGGGACAGCACCCTTGCAGGAACCACCTGATTCATCTCTGCAGCCACTGCTTAAGGAGAAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CAA 90 bp TATCAAGCACTTCTTTCTCACAGAGTCAACCAGGAAAAAGGACAGCACAGAGCCTCCTGGTTTCCAGTCTaGCCCTCTTCTCCACTGCCA +
Preference number: 5 (lower is better)
Translates to: YQALLSHRVNQEKGQHRASWFPV*PSSPLP
Trigger: TGGCAGTGGAGAAGAGGGCAAGACTGGAAACCAGGA...GGCTCTGTGCTGTCCTTTTTCCTGGTTGACTCTGTGAGAAAGAAGTGCTTGATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CAA 90 bp CATGGAGGAAAGCGGGTAGGCACCATGGTTATCAAGCACTTCTTTCTCACAGAGTCTTTCAAGCCATCTTaGGGCTTCATGGGGTTTGCG +
Preference number: 5 (lower is better)
Translates to: HGGKRVGTMVIKHFFLTESFKPS*GFMGFA
Trigger: CGCAAACCCCATGAAGCCCAAAGATGGCTTGAAAGA...CTCTGTGAGAAAGAAGTGCTTGATAACCATGGTGCCTACCCGCTTTCCTCCATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CAA 90 bp TCTCCATACGAAGGAACTGAGTCACAAACTGGCTTGCTGACTTCCCGTCAGAGAATAGTAGAAACCATCTaGGCACAGCCGCTCCTTCAG +
Preference number: 5 (lower is better)
Translates to: SPYEGTESQTGLLTSRQRIVETI*AQPLLQ
Trigger: CTGAAGGAGCGGCTGTGCCAAGATGGTTTCTACTAT...TCTCTGACGGGAAGTCAGCAAGCCAGTTTGTGACTCAGTTCCTTCGTATGGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CAA 90 bp GTCAACCAGGAAAAAGGACAGCACAGAGCCAATCTCTTGCTTTTCAGAGCCACACTGCTGCGCTCAGTTTaGGTCTTGGTGGTGGTGAAT +
Preference number: 5 (lower is better)
Translates to: VNQEKGQHRANLLLFRATLLRSV*VLVVVN
Trigger: ATTCACCACCACCAAGACCAAAACTGAGCGCAGCAG...TGTGGCTCTGAAAAGCAAGAGATTGGCTCTGTGCTGTCCTTTTTCCTGGTTGAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CAA 90 bp TACCCAGTGTCAGTAGATCCAGACTACACAGAGGCAGCGCTATTCATCACCAGATCAGGAGAAACTGTGTaGCTATTCTCCACACGCTCC +
Preference number: 5 (lower is better)
Translates to: YPVSVDPDYTEAALFITRSGETV*LFSTRS
Trigger: GGAGCGTGTGGAGAATAGCAACACAGTTTCTCCTGA...TCTGGTGATGAATAGCGCTGCCTCTGTGTAGTCTGGATCTACTGACACTGGGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS TCA 90 bp GGTAAAGTGGGGACATCAAGCTCTGCAGAAAAGCACGCTGACTCCTaGATTCTCCGAATTCTCTTCTCCTTAAGCAGTGGCTGCAGAGAT +
Preference number: 5 (lower is better)
Translates to: GKVGTSSSAEKHADS*ILRILFSLSSGCRD
Trigger: ATCTCTGCAGCCACTGCTTAAGGAGAAGAGAATTCGGAGAATTCAGGAGTCAGCGTGCTTTTCTGCAGAGCTTGATGTCCCCACTTTACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CAA 90 bp GCTCTCTTGTCTCTCGTGCCCACGTTAACACCTGAAGGAGACACAGAGGCAAAGTGGGGACACTGTGTTTaGATTTCTAATTGTCCTGCT +
Preference number: 5 (lower is better)
Translates to: ALLSLVPTLTPEGDTEAKWGHCV*ISNCPA
Trigger: AGCAGGACAATTAGAAATCAAAACACAGTGTCCCCA...CTTTGCCTCTGTGTCTCCTTCAGGTGTTAACGTGGGCACGAGAGACAAGAGAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CAA 90 bp GCACTTCTTTCTCACAGAGTCAACCAGGAAAAAGGACAGCACAGAGCCAATCTCTCTCCATTCTTCTTCTaGGCTTTACAGGCTCCCAGG +
Preference number: 5 (lower is better)
Translates to: ALLSHRVNQEKGQHRANLSPFFF*ALQAPR
Trigger: CCTGGGAGCCTGTAAAGCCAAGAAGAAGAATGGAGA...GAGATTGGCTCTGTGCTGTCCTTTTTCCTGGTTGACTCTGTGAGAAAGAAGTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CAA 90 bp GTGGGGAGAGACCCATGCCATGTTAGCTCTCTTGTCTCTCGTGCCCACGTTAACGGGAATACCAAGCTTTaGTTTTGTTTCCTGGATGAT +
Preference number: 5 (lower is better)
Translates to: VGRDPCHVSSLVSRAHVNGNTKL*FCFLDD
Trigger: ATCATCCAGGAAACAAAACAAAAGCTTGGTATTCCC...GTTAACGTGGGCACGAGAGACAAGAGAGCTAACATGGCATGGGTCTCTCCCCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CAA 90 bp TACCCAGTGTCAGTAGATCCAGACTACACAGAGGCAGCGCTATTCATCACCAGACGCTCAGTTTTGGTCTaGGTGGTGGTGAATCATCAA +
Preference number: 5 (lower is better)
Translates to: YPVSVDPDYTEAALFITRRSVLV*VVVNHQ
Trigger: TTGATGATTCACCACCACCAAGACCAAAACTGAGCG...TCTGGTGATGAATAGCGCTGCCTCTGTGTAGTCTGGATCTACTGACACTGGGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS GCA 90 bp TTCTCCACACGCTCCTTCACTCCCAGCATGGCTCGGCCATCCATTTaGTTCCTTACAGTATTGTTTGGATCTACTTTTGTGAGAATCTGG +
Preference number: 5 (lower is better)
Translates to: FSTRSFTPSMARPSI*FLTVLFGSTFVRIW
Trigger: CCAGATTCTCACAAAAGTAGATCCAAACAATACTGTAAGGAAGCAAATGGATGGCCGAGCCATGCTGGGAGTGAAGGAGCGTGTGGAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CCA 90 bp GAGAAACTGTGTTGCTATTCTCCACACGCTCCTTCACTCCCAGCATaGCTCGGCCATCCATTTGCTTCCTTACAGTATTGTTTGGATCTA +
Preference number: 5 (lower is better)
Translates to: EKLCCYSPHAPSLPA*LGHPFASLQYCLDL
Trigger: TAGATCCAAACAATACTGTAAGGAAGCAAATGGATGGCCGAGCCATGCTGGGAGTGAAGGAGCGTGTGGAGAATAGCAACACAGTTTCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CAA 90 bp TTGCTGACTTCCCGTCAGAGAAAAAGCTGCAATCACAGTCAACAGAAGGAAACCATAGTAGAAACCATCTaGGCACAGCCGCTCCTTCAG +
Preference number: 5 (lower is better)
Translates to: LLTSRQRKSCNHSQQKETIVETI*AQPLLQ
Trigger: CTGAAGGAGCGGCTGTGCCAAGATGGTTTCTACTAT...GGTTTCCTTCTGTTGACTGTGATTGCAGCTTTTTCTCTGACGGGAAGTCAGCAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CAA 90 bp GCACTTCTTTCTCACAGAGTCAACCAGGAAAAAGGACAGCACAGAGCCAATCTCCATCTCCAGCATCTGTaGTTTCTGCTGCTTCAAGAG +
Preference number: 5 (lower is better)
Translates to: ALLSHRVNQEKGQHRANLHLQHL*FLLLQE
Trigger: CTCTTGAAGCAGCAGAAACAACAGATGCTGGAGATG...GAGATTGGCTCTGTGCTGTCCTTTTTCCTGGTTGACTCTGTGAGAAAGAAGTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS TCA 90 bp AGATCAGTCCTCTTTGCGCTGAGCTTCTTGTACTGGGCCTGGATGTaGTACTGGCAGTATTCACAGTCATGCAAGTTAACTGTCTGTGTA +
Preference number: 5 (lower is better)
Translates to: RSVLFALSFLYWAWM*YWQYSQSCKLTVCV
Trigger: TACACAGACAGTTAACTTGCATGACTGTGAATACTGCCAGTATCACATCCAGGCCCAGTACAAGAAGCTCAGCGCAAAGAGGACTGATCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CAA 90 bp TTGCTGACTTCCCGTCAGAGAAAAAGCTGCAATCACAGTCAACAGAAGGAAACCATTGGTCAGCGTGGTTaGAACCTTCTTCTTAGGAGC +
Preference number: 5 (lower is better)
Translates to: LLTSRQRKSCNHSQQKETIGQRG*NLLLRS
Trigger: GCTCCTAAGAAGAAGGTTCAAACCACGCTGACCAAT...GGTTTCCTTCTGTTGACTGTGATTGCAGCTTTTTCTCTGACGGGAAGTCAGCAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CAA 90 bp AACTTTTCTCCATACGAAGGAACTGAGTCACAAACTGGCTTGCTGACTTCCCGTCATCTCCAGCATCTGTaGTTTCTGCTGCTTCAAGAG +
Preference number: 5 (lower is better)
Translates to: NFSPYEGTESQTGLLTSRHLQHL*FLLLQE
Trigger: CTCTTGAAGCAGCAGAAACAACAGATGCTGGAGATG...ACGGGAAGTCAGCAAGCCAGTTTGTGACTCAGTTCCTTCGTATGGAGAAAAGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CAA 90 bp TATCAAGCACTTCTTTCTCACAGAGTCAACCAGGAAAAAGGACAGCACAGAGCCGGCTCGGCCATCCATTaGCTTCCTTACAGTATTGTT +
Preference number: 5 (lower is better)
Translates to: YQALLSHRVNQEKGQHRAGSAIH*LPYSIV
Trigger: AACAATACTGTAAGGAAGCAAATGGATGGCCGAGCC...GGCTCTGTGCTGTCCTTTTTCCTGGTTGACTCTGTGAGAAAGAAGTGCTTGATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CAA 90 bp AGCTGGTTTCTGAGTCACGTTTCACAGCCTCTCAAGTTGTACATTTGCTTTTATTCTTTCAAGCCATCTTaGGGCTTCATGGGGTTTGCG +
Preference number: 5 (lower is better)
Translates to: SWFLSHVSQPLKLYICFYSFKPS*GFMGFA
Trigger: CGCAAACCCCATGAAGCCCAAAGATGGCTTGAAAGA...ATAAAAGCAAATGTACAACTTGAGAGGCTGTGAAACGTGACTCAGAAACCAGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102985.8
CDS-3UTR CAA 90 bp TACCCAGTGTCAGTAGATCCAGACTACACAGAGGCAGCGCTATTCATCACCAGATGCTTCCTTACAGTATaGTTTGGATCTACTTTTGTG +
Preference number: 5 (lower is better)
Translates to: YPVSVDPDYTEAALFITRCFLTV*FGSTFV
Trigger: CACAAAAGTAGATCCAAACAATACTGTAAGGAAGCA...TCTGGTGATGAATAGCGCTGCCTCTGTGTAGTCTGGATCTACTGACACTGGGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CAA 90 bp AGCACATGGAGGAAAGCGGGTAGGCACCATGGTTATCAAGCACTTCTTTCTCACTGCTTCCTTACAGTATaGTTTGGATCTACTTTTGTG +
Preference number: 5 (lower is better)
Translates to: STWRKAGRHHGYQALLSHCFLTV*FGSTFV
Trigger: CACAAAAGTAGATCCAAACAATACTGTAAGGAAGCA...GTGAGAAAGAAGTGCTTGATAACCATGGTGCCTACCCGCTTTCCTCCATGTGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CAA 90 bp AAAGTTCTTGAGTCACCTTTCAGTTCTGGGGCAGGCATCTGTGACTCAAGGAAAAGGATGTCTGTGTGCTaGGACTTTGCTTTTAGAATC +
Preference number: 5 (lower is better)
Translates to: KVLESPFSSGAGICDSRKRMSVC*DFAFRI
Trigger: GATTCTAAAAGCAAAGTCCAAGCACACAGACATCCT...TTTCCTTGAGTCACAGATGCCTGCCCCAGAACTGAAAGGTGACTCAAGAACTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CAA 90 bp AACTTTTCTCCATACGAAGGAACTGAGTCACAAACTGGCTTGCTGACTTCCCGTAGGATGTCTGTGTGCTaGGACTTTGCTTTTAGAATC +
Preference number: 5 (lower is better)
Translates to: NFSPYEGTESQTGLLTSRRMSVC*DFAFRI
Trigger: GATTCTAAAAGCAAAGTCCAAGCACACAGACATCCT...ACGGGAAGTCAGCAAGCCAGTTTGTGACTCAGTTCCTTCGTATGGAGAAAAGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS-3UTR CAA 90 bp GACAGGACCAGCATTCACATGGGTCAAATACCGTTAGAAAACAGTTTGTCCAGCGGGAATACCAAGCTTTaGTTTTGTTTCCTGGATGAT +
Preference number: 5 (lower is better)
Translates to: DRTSIHMGQIPLENSLSSGNTKL*FCFLDD
Trigger: ATCATCCAGGAAACAAAACAAAAGCTTGGTATTCCC...GCTGGACAAACTGTTTTCTAACGGTATTTGACCCATGTGAATGCTGGTCCTGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102985.8
CDS-3UTR CAA 90 bp AGCTGGTTTCTGAGTCACGTTTCACAGCCTCTCAAGTTGTACATTTGCTTTTATTTTCCACAGGGACATTaGAAAAACCTCTTCACGCCG +
Preference number: 5 (lower is better)
Translates to: SWFLSHVSQPLKLYICFYFPQGH*KNLFTP
Trigger: CGGCGTGAAGAGGTTTTTCAAATGTCCCTGTGGAAA...ATAAAAGCAAATGTACAACTTGAGAGGCTGTGAAACGTGACTCAGAAACCAGCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000102985.8
CDS-3UTR CAA 90 bp AAAGGCAGGATTAAAAGGTTAGTTCCATTAATGAATATTTTCAAGGCCCATGGGTCAGGAGAAACTGTGTaGCTATTCTCCACACGCTCC +
Preference number: 5 (lower is better)
Translates to: KGRIKRLVPLMNIFKAHGSGETV*LFSTRS
Trigger: GGAGCGTGTGGAGAATAGCAACACAGTTTCTCCTGA...CCCATGGGCCTTGAAAATATTCATTAATGGAACTAACCTTTTAATCCTGCCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102985.8
CDS GCA 90 bp ATTGATGCAGCTTTTAGCTGCTCCTGTAAGGATTTCATTTGCTCTTaGAACTTCTTTAATTCATCTTGCAGCTCCTCGCTGGTTTTCTCT +
Preference number: 5 (lower is better)
Translates to: IDAAFSCSCKDFICS*NFFNSSCSSSLVFS
Trigger: AGAGAAAACCAGCGAGGAGCTGCAAGATGAATTAAAGAAGTTGCAAGAGCAAATGAAATCCTTACAGGAGCAGCTAAAAGCTGCATCAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CCA 72 bp CCTGAGAAGGCTTCCACAGAGACCTGGGAAACCTGCTaGGGCCGGTCCCCAGAATTCCCTGGGGACACTGTG +
Preference number: 6 (lower is better)
Translates to: PEKASTETWETC*GRSPEFPGDTV
Trigger: CACAGTGTCCCCAGGGAATTCTGGGGACCGGCCCCAGCAGGTTTCCCAGGTCTCTGTGGAAGCCTTCTCAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CCA 72 bp CTGAGGCGTAGGCCTGAGAAGGCTTCCACAGAGACCTaGGAAACCTGCTGGGGCCGGTCCCCAGAATTCCCT +
Preference number: 6 (lower is better)
Translates to: LRRRPEKASTET*ETCWGRSPEFP
Trigger: AGGGAATTCTGGGGACCGGCCCCAGCAGGTTTCCCAGGTCTCTGTGGAAGCCTTCTCAGGCCTACGCCTCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CCA 72 bp TCCAACCTGGGGAACTCAGCCCCAGTTCGAGGAGACTaGGCAGCAGCCTGTCGAGAGGAAGACGGCACTGCT +
Preference number: 6 (lower is better)
Translates to: SNLGNSAPVRGD*AAACREEDGTA
Trigger: AGCAGTGCCGTCTTCCTCTCGACAGGCTGCTGCCCAGTCTCCTCGAACTGGGGCTGAGTTCCCCAGGTTGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CCA 72 bp GAACATCGTCCCCTTCTGAGATGCCTCTGCCCAGCTTaGGCATCCGTGGGGTTGCAGTTCCTTCCAACCTGG +
Preference number: 6 (lower is better)
Translates to: EHRPLLRCLCPA*ASVGLQFLPTW
Trigger: CCAGGTTGGAAGGAACTGCAACCCCACGGATGCCCAAGCTGGGCAGAGGCATCTCAGAAGGGGACGATGTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CAA 90 bp GATGATCGAGTTTGTGCCCCGGACAACCAGATTGGTCAGCGTGGTTaGAACCTTCTTCTTAGGAGCAATGGCCGCCGCCCTGGACGCTGC +
Preference number: 6 (lower is better)
Translates to: DDRVCAPDNQIGQRG*NLLLRSNGRRPGRC
Trigger: GCAGCGTCCAGGGCGGCGGCCATTGCTCCTAAGAAGAAGGTTCAAACCACGCTGACCAATCTGGTTGTCCGGGGCACAAACTCGATCATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS TCA 72 bp TCCTGCTCATTTCTGTGGAGGAGACTCGAGGTCGCCTaGGGCGTAGGCCTGAGAAGGCTTCCACAGAGACCT +
Preference number: 6 (lower is better)
Translates to: SCSFLWRRLEVA*GVGLRRLPQRP
Trigger: AGGTCTCTGTGGAAGCCTTCTCAGGCCTACGCCTCAGGCGACCTCGAGTCTCCTCCACAGAAATGAGCAGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS GCA 72 bp AGAAACCATCTTGGCACAGCCGCTCCTTCAGGCTGGTaGCTTTGCGGAACTTCTTCGGAATCCGTCCCCCAG +
Preference number: 6 (lower is better)
Translates to: RNHLGTAAPSGW*LCGTSSESVPQ
Trigger: CTGGGGGACGGATTCCGAAGAAGTTCCGCAAAGGCACCAGCCTGAAGGAGCGGCTGTGCCAAGATGGTTTCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS GCA 72 bp AACCTCTTCACGCCGTCGTGCCAGTGGAGGTTATGCTaGTCGCTGACACAGGTCTCCAGAGGCTTGAAGTGG +
Preference number: 6 (lower is better)
Translates to: NLFTPSCQWRLC*SLTQVSRGLKW
Trigger: CCACTTCAAGCCTCTGGAGACCTGTGTCAGCGAGCAGCATAACCTCCACTGGCACGACGGCGTGAAGAGGTT
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CAA 72 bp CCATCTTGGCACAGCCGCTCCTTCAGGCTGGTGCCTTaGCGGAACTTCTTCGGAATCCGTCCCCCAGAGAAA +
Preference number: 6 (lower is better)
Translates to: PSWHSRSFRLVP*RNFFGIRPPEK
Trigger: TTTCTCTGGGGGACGGATTCCGAAGAAGTTCCGCAAAGGCACCAGCCTGAAGGAGCGGCTGTGCCAAGATGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CAA 72 bp AGAACATCGTCCCCTTCTGAGATGCCTCTGCCCAGCTaGGGCATCCGTGGGGTTGCAGTTCCTTCCAACCTG +
Preference number: 6 (lower is better)
Translates to: RTSSPSEMPLPS*GIRGVAVPSNL
Trigger: CAGGTTGGAAGGAACTGCAACCCCACGGATGCCCAAGCTGGGCAGAGGCATCTCAGAAGGGGACGATGTTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS TCA 72 bp TTTGTGCCCCGGACAACCAGATTGGTCAGCGTGGTTTaGACCTTCTTCTTAGGAGCAATGGCCGCCGCCCTG +
Preference number: 6 (lower is better)
Translates to: FVPRTTRLVSVV*TFFLGAMAAAL
Trigger: CAGGGCGGCGGCCATTGCTCCTAAGAAGAAGGTTCAAACCACGCTGACCAATCTGGTTGTCCGGGGCACAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CCA 72 bp GCAGCCTGTCGAGAGGAAGACGGCACTGCTGGGCTCTaGACTTCACTTGAGCTTTGGAGGAATCGCTTCTGT +
Preference number: 6 (lower is better)
Translates to: AACREEDGTAGL*TSLELWRNRFC
Trigger: ACAGAAGCGATTCCTCCAAAGCTCAAGTGAAGTCCAGAGCCCAGCAGTGCCGTCTTCCTCTCGACAGGCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CAA 72 bp GTTTGTGCCCCGGACAACCAGATTGGTCAGCGTGGTTaGAACCTTCTTCTTAGGAGCAATGGCCGCCGCCCT +
Preference number: 6 (lower is better)
Translates to: VCAPDNQIGQRG*NLLLRSNGRRP
Trigger: AGGGCGGCGGCCATTGCTCCTAAGAAGAAGGTTCAAACCACGCTGACCAATCTGGTTGTCCGGGGCACAAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS GCA 72 bp CAAAGAAGAGAACATCGTCCCCTTCTGAGATGCCTCTaGCCAGCTTGGGCATCCGTGGGGTTGCAGTTCCTT +
Preference number: 6 (lower is better)
Translates to: QRREHRPLLRCL*PAWASVGLQFL
Trigger: AAGGAACTGCAACCCCACGGATGCCCAAGCTGGGCAGAGGCATCTCAGAAGGGGACGATGTTCTCTTCTTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS GCA 72 bp AAAAACCTCTTCACGCCGTCGTGCCAGTGGAGGTTATaGTGCTCGCTGACACAGGTCTCCAGAGGCTTGAAG +
Preference number: 6 (lower is better)
Translates to: KNLFTPSCQWRL*CSLTQVSRGLK
Trigger: CTTCAAGCCTCTGGAGACCTGTGTCAGCGAGCAGCATAACCTCCACTGGCACGACGGCGTGAAGAGGTTTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS GCA 72 bp CCACAGGGACATTTGAAAAACCTCTTCACGCCGTCGTaGCAGTGGAGGTTATGCTGCTCGCTGACACAGGTC +
Preference number: 6 (lower is better)
Translates to: PQGHLKNLFTPS*QWRLCCSLTQV
Trigger: GACCTGTGTCAGCGAGCAGCATAACCTCCACTGGCACGACGGCGTGAAGAGGTTTTTCAAATGTCCCTGTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CCA 72 bp ACTCTGCAGGAGTCTTTGGCTTCCGAGCAACCCGCTTaGCTTTGGGTAAAGTGGGGACATCAAGCTCTGCAG +
Preference number: 6 (lower is better)
Translates to: TLQESLASEQPA*LWVKWGHQALQ
Trigger: CTGCAGAGCTTGATGTCCCCACTTTACCCAAAGCCAAGCGGGTTGCTCGGAAGCCAAAGACTCCTGCAGAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CCA 72 bp AGAGGGCTGATGCTGAGATGGACTGGATGGCAGGTTTaGAACTCCCTGAAGCCTTGGCTCTGGCTAGATGCT +
Preference number: 6 (lower is better)
Translates to: RGLMLRWTGWQV*NSLKPWLWLDA
Trigger: AGCATCTAGCCAGAGCCAAGGCTTCAGGGAGTTCCAAACCTGCCATCCAGTCCATCTCAGCATCAGCCCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CAA 72 bp GACTCTGCAGGAGTCTTTGGCTTCCGAGCAACCCGCTaGGCTTTGGGTAAAGTGGGGACATCAAGCTCTGCA +
Preference number: 6 (lower is better)
Translates to: DSAGVFGFRATR*ALGKVGTSSSA
Trigger: TGCAGAGCTTGATGTCCCCACTTTACCCAAAGCCAAGCGGGTTGCTCGGAAGCCAAAGACTCCTGCAGAGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CAA 72 bp AAGAGGGCTGATGCTGAGATGGACTGGATGGCAGGTTaGGAACTCCCTGAAGCCTTGGCTCTGGCTAGATGC +
Preference number: 6 (lower is better)
Translates to: KRADAEMDWMAG*ELPEALALARC
Trigger: GCATCTAGCCAGAGCCAAGGCTTCAGGGAGTTCCAAACCTGCCATCCAGTCCATCTCAGCATCAGCCCTCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CAA 72 bp CTGGCAGGCTCCAGCTCCTCTTCAGGAGAAACTGTGTaGCTATTCTCCACACGCTCCTTCACTCCCAGCATG +
Preference number: 6 (lower is better)
Translates to: LAGSSSSSGETV*LFSTRSFTPSM
Trigger: CATGCTGGGAGTGAAGGAGCGTGTGGAGAATAGCAACACAGTTTCTCCTGAAGAGGAGCTGGAGCCTGCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CAA 72 bp CCCACTTGTAGAGGCCACAGTTACGGCAGTGCTTGTTaGGGAGCTTGTCCAGGGAGATGGTCCTGTTTCCAC +
Preference number: 6 (lower is better)
Translates to: PTCRGHSYGSAC*GACPGRWSCFH
Trigger: GTGGAAACAGGACCATCTCCCTGGACAAGCTCCCAAACAAGCACTGCCGTAACTGTGGCCTCTACAAGTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CAA 90 bp GATGACTCTGCAGGAGTCTTTGGCTTCCGAGCAACCCGCTTGGCTTaGGGTAAAGTGGGGACATCAAGCTCTGCAGAAAAGCACGCTGAC +
Preference number: 6 (lower is better)
Translates to: DDSAGVFGFRATRLA*GKVGTSSSAEKHAD
Trigger: GTCAGCGTGCTTTTCTGCAGAGCTTGATGTCCCCACTTTACCCAAAGCCAAGCGGGTTGCTCGGAAGCCAAAGACTCCTGCAGAGTCATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS TCA 72 bp CCGAATTCTCTTCTCCTTAAGCAGTGGCTGCAGAGATaGATCAGGTGGTTCCTGCAAGGGTGCTGTCCCTGG +
Preference number: 6 (lower is better)
Translates to: PNSLLLKQWLQR*IRWFLQGCCPW
Trigger: CCAGGGACAGCACCCTTGCAGGAACCACCTGATTCATCTCTGCAGCCACTGCTTAAGGAGAAGAGAATTCGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS TCA 72 bp TTCTGGCTCCAAATGTGGGCAGGGCCATCAATTCCCTaGACTCCTCAGAGCAGGACAAGCTCTTCTGGGGAA +
Preference number: 6 (lower is better)
Translates to: FWLQMWAGPSIP*TPQSRTSSSGE
Trigger: TTCCCCAGAAGAGCTTGTCCTGCTCTGAGGAGTTCAGGGAATTGATGGCCCTGCCCACATTTGGAGCCAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS GCA 72 bp CTTCTTCTTAGGAGCAATGGCCGCCGCCCTGGACGCTaGGAAGGATTCGGAAGAAACACCACCATAGTAGAA +
Preference number: 6 (lower is better)
Translates to: LLLRSNGRRPGR*EGFGRNTTIVE
Trigger: TTCTACTATGGTGGTGTTTCTTCCGAATCCTTCGCAGCGTCCAGGGCGGCGGCCATTGCTCCTAAGAAGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS GCA 72 bp AATCATCAAAGAAGAGAACATCGTCCCCTTCTGAGATaGCTCTGCCCAGCTTGGGCATCCGTGGGGTTGCAG +
Preference number: 6 (lower is better)
Translates to: NHQRREHRPLLR*LCPAWASVGLQ
Trigger: CTGCAACCCCACGGATGCCCAAGCTGGGCAGAGGCATCTCAGAAGGGGACGATGTTCTCTTCTTTGATGATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CCA 72 bp TTGGCTTCCGAGCAACCCGCTTGGCTTTGGGTAAAGTaGGGACATCAAGCTCTGCAGAAAAGCACGCTGACT +
Preference number: 6 (lower is better)
Translates to: LASEQPAWLWVK*GHQALQKSTLT
Trigger: AGTCAGCGTGCTTTTCTGCAGAGCTTGATGTCCCCACTTTACCCAAAGCCAAGCGGGTTGCTCGGAAGCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CCA 72 bp CAGGAGTCTTTGGCTTCCGAGCAACCCGCTTGGCTTTaGGTAAAGTGGGGACATCAAGCTCTGCAGAAAAGC +
Preference number: 6 (lower is better)
Translates to: QESLASEQPAWL*VKWGHQALQKS
Trigger: GCTTTTCTGCAGAGCTTGATGTCCCCACTTTACCCAAAGCCAAGCGGGTTGCTCGGAAGCCAAAGACTCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CCA 72 bp TTCTGCTGCTTCAAGAGGGCTGATGCTGAGATGGACTaGATGGCAGGTTTGGAACTCCCTGAAGCCTTGGCT +
Preference number: 6 (lower is better)
Translates to: FCCFKRADAEMD*MAGLELPEALA
Trigger: AGCCAAGGCTTCAGGGAGTTCCAAACCTGCCATCCAGTCCATCTCAGCATCAGCCCTCTTGAAGCAGCAGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CCA 72 bp GGACATTTGAAAAACCTCTTCACGCCGTCGTGCCAGTaGAGGTTATGCTGCTCGCTGACACAGGTCTCCAGA +
Preference number: 6 (lower is better)
Translates to: GHLKNLFTPSCQ*RLCCSLTQVSR
Trigger: TCTGGAGACCTGTGTCAGCGAGCAGCATAACCTCCACTGGCACGACGGCGTGAAGAGGTTTTTCAAATGTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CCA 72 bp CCACTTGTAGAGGCCACAGTTACGGCAGTGCTTGTTTaGGAGCTTGTCCAGGGAGATGGTCCTGTTTCCACA +
Preference number: 6 (lower is better)
Translates to: PLVEATVTAVLV*ELVQGDGPVST
Trigger: TGTGGAAACAGGACCATCTCCCTGGACAAGCTCCCAAACAAGCACTGCCGTAACTGTGGCCTCTACAAGTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CAA 90 bp GAAAACTGGAAGAAACCTGTAGTGGCTGTGCGGGTGTACGCATCCTaGAAGATGACTCTGCAGGAGTCTTTGGCTTCCGAGCAACCCGCT +
Preference number: 6 (lower is better)
Translates to: ENWKKPVVAVRVYAS*KMTLQESLASEQPA
Trigger: AGCGGGTTGCTCGGAAGCCAAAGACTCCTGCAGAGTCATCTTCAAGGATGCGTACACCCGCACAGCCACTACAGGTTTCTTCCAGTTTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CAA 90 bp CGCTGCGAAGGATTCGGAAGAAACACCACCATAGTAGAAACCATCTaGGCACAGCCGCTCCTTCAGGCTGGTGCCTTTGCGGAACTTCTT +
Preference number: 6 (lower is better)
Translates to: RCEGFGRNTTIVETI*AQPLLQAGAFAELL
Trigger: AAGAAGTTCCGCAAAGGCACCAGCCTGAAGGAGCGGCTGTGCCAAGATGGTTTCTACTATGGTGGTGTTTCTTCCGAATCCTTCGCAGCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CAA 90 bp CAGCCTGTCGAGAGGAAGACGGCACTGCTGGGCTCTGGACTTCACTaGAGCTTTGGAGGAATCGCTTCTGTATGTCTTCTGATCTCCTCT +
Preference number: 6 (lower is better)
Translates to: QPVERKTALLGSGLH*SFGGIASVCLLISS
Trigger: AGAGGAGATCAGAAGACATACAGAAGCGATTCCTCCAAAGCTCAAGTGAAGTCCAGAGCCCAGCAGTGCCGTCTTCCTCTCGACAGGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CAA 90 bp TTTGGGAGCTTGTCCAGGGAGATGGTCCTGTTTCCACAGGGACATTaGAAAAACCTCTTCACGCCGTCGTGCCAGTGGAGGTTATGCTGC +
Preference number: 6 (lower is better)
Translates to: FGSLSREMVLFPQGH*KNLFTPSCQWRLCC
Trigger: GCAGCATAACCTCCACTGGCACGACGGCGTGAAGAGGTTTTTCAAATGTCCCTGTGGAAACAGGACCATCTCCCTGGACAAGCTCCCAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS TCA 72 bp CAGAGAAAGTGGACTGCAGATCAGTCCTCTTTGCGCTaGGCTTCTTGTACTGGGCCTGGATGTGATACTGGC +
Preference number: 6 (lower is better)
Translates to: QRKWTADQSSLR*ASCTGPGCDTG
Trigger: GCCAGTATCACATCCAGGCCCAGTACAAGAAGCTCAGCGCAAAGAGGACTGATCTGCAGTCCACTTTCTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS GCA 72 bp CACCTCTTTCAAGCCATCTTTGGGCTTCATGGGGTTTaGGTTGAGCAAGCCTATGACGGTCCCTTGCTCTGT +
Preference number: 6 (lower is better)
Translates to: HLFQAIFGLHGV*VEQAYDGPLLC
Trigger: ACAGAGCAAGGGACCGTCATAGGCTTGCTCAACGCAAACCCCATGAAGCCCAAAGATGGCTTGAAAGAGGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS GCA 72 bp TCCCCCAGAGAAAGTGGACTGCAGATCAGTCCTCTTTaGGCTGAGCTTCTTGTACTGGGCCTGGATGTGATA +
Preference number: 6 (lower is better)
Translates to: SPRESGLQISPL*AELLVLGLDVI
Trigger: TATCACATCCAGGCCCAGTACAAGAAGCTCAGCGCAAAGAGGACTGATCTGCAGTCCACTTTCTCTGGGGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS GCA 72 bp CTCCTCTTCCGCATCTCCAGCATCTGTTGTTTCTGCTaGTTCAAGAGGGCTGATGCTGAGATGGACTGGATG +
Preference number: 6 (lower is better)
Translates to: LLFRISSICCFC*FKRADAEMDWM
Trigger: CATCCAGTCCATCTCAGCATCAGCCCTCTTGAAGCAGCAGAAACAACAGATGCTGGAGATGCGGAAGAGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS GCA 72 bp GATCTCCTCTTCCGCATCTCCAGCATCTGTTGTTTCTaGTGCTTCAAGAGGGCTGATGCTGAGATGGACTGG +
Preference number: 6 (lower is better)
Translates to: DLLFRISSICCF*CFKRADAEMDW
Trigger: CCAGTCCATCTCAGCATCAGCCCTCTTGAAGCAGCAGAAACAACAGATGCTGGAGATGCGGAAGAGGAGATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CCA 72 bp CCAGATGCTAAACGTTTGCCCACTGGTAGCACTCTGTaGAGTGACCTTCCTGAGGATAACCCCAAACGTCAC +
Preference number: 6 (lower is better)
Translates to: PDAKRLPTGSTL*SDLPEDNPKRH
Trigger: GTGACGTTTGGGGTTATCCTCAGGAAGGTCACTCCACAGAGTGCTACCAGTGGGCAAACGTTTAGCATCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CCA 72 bp GACGGCACTGCTGGGCTCTGGACTTCACTTGAGCTTTaGAGGAATCGCTTCTGTATGTCTTCTGATCTCCTC +
Preference number: 6 (lower is better)
Translates to: DGTAGLWTSLEL*RNRFCMSSDLL
Trigger: GAGGAGATCAGAAGACATACAGAAGCGATTCCTCCAAAGCTCAAGTGAAGTCCAGAGCCCAGCAGTGCCGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CAA 72 bp GTGTACGCATCCTTGAAGATGACTCTGCAGGAGTCTTaGGCTTCCGAGCAACCCGCTTGGCTTTGGGTAAAG +
Preference number: 6 (lower is better)
Translates to: VYASLKMTLQES*ASEQPAWLWVK
Trigger: CTTTACCCAAAGCCAAGCGGGTTGCTCGGAAGCCAAAGACTCCTGCAGAGTCATCTTCAAGGATGCGTACAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CAA 72 bp AAGAAACCTGTAGTGGCTGTGCGGGTGTACGCATCCTaGAAGATGACTCTGCAGGAGTCTTTGGCTTCCGAG +
Preference number: 6 (lower is better)
Translates to: KKPVVAVRVYAS*KMTLQESLASE
Trigger: CTCGGAAGCCAAAGACTCCTGCAGAGTCATCTTCAAGGATGCGTACACCCGCACAGCCACTACAGGTTTCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CAA 90 bp CTTGAAGATGACTCTGCAGGAGTCTTTGGCTTCCGAGCAACCCGCTaGGCTTTGGGTAAAGTGGGGACATCAAGCTCTGCAGAAAAGCAC +
Preference number: 6 (lower is better)
Translates to: LEDDSAGVFGFRATR*ALGKVGTSSSAEKH
Trigger: GTGCTTTTCTGCAGAGCTTGATGTCCCCACTTTACCCAAAGCCAAGCGGGTTGCTCGGAAGCCAAAGACTCCTGCAGAGTCATCTTCAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CAA 90 bp TGCTGCTTCAAGAGGGCTGATGCTGAGATGGACTGGATGGCAGGTTaGGAACTCCCTGAAGCCTTGGCTCTGGCTAGATGCTTTTGTAAG +
Preference number: 6 (lower is better)
Translates to: CCFKRADAEMDWMAG*ELPEALALARCFCK
Trigger: CTTACAAAAGCATCTAGCCAGAGCCAAGGCTTCAGGGAGTTCCAAACCTGCCATCCAGTCCATCTCAGCATCAGCCCTCTTGAAGCAGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CAA 90 bp AAGCACACCTCTTTCAAGCCATCTTTGGGCTTCATGGGGTTTGCGTaGAGCAAGCCTATGACGGTCCCTTGCTCTGTCTTCCAGAGATCT +
Preference number: 6 (lower is better)
Translates to: KHTSFKPSLGFMGFA*SKPMTVPCSVFQRS
Trigger: AGATCTCTGGAAGACAGAGCAAGGGACCGTCATAGGCTTGCTCAACGCAAACCCCATGAAGCCCAAAGATGGCTTGAAAGAGGTGTGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS GCA 72 bp AACTTCTTCGGAATCCGTCCCCCAGAGAAAGTGGACTaGAGATCAGTCCTCTTTGCGCTGAGCTTCTTGTAC +
Preference number: 6 (lower is better)
Translates to: NFFGIRPPEKVD*RSVLFALSFLY
Trigger: GTACAAGAAGCTCAGCGCAAAGAGGACTGATCTGCAGTCCACTTTCTCTGGGGGACGGATTCCGAAGAAGTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS GCA 72 bp GGTTTGGAACTCCCTGAAGCCTTGGCTCTGGCTAGATaGTTTTGTAAGTTTCTGGCTCCAAATGTGGGCAGG +
Preference number: 6 (lower is better)
Translates to: GLELPEALALAR*FCKFLAPNVGR
Trigger: CCTGCCCACATTTGGAGCCAGAAACTTACAAAAGCATCTAGCCAGAGCCAAGGCTTCAGGGAGTTCCAAACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CCA 72 bp CATCATCCGTTAAGTCCTCCACATCACCAAAGAGAGTaGCCAAACGTTCCTCCTGGTTTCCAGTCTTGCCCT +
Preference number: 6 (lower is better)
Translates to: HHPLSPPHHQRE*PNVPPGFQSCP
Trigger: AGGGCAAGACTGGAAACCAGGAGGAACGTTTGGCCACTCTCTTTGGTGATGTGGAGGACTTAACGGATGATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CCA 72 bp TGGACTGGATGGCAGGTTTGGAACTCCCTGAAGCCTTaGCTCTGGCTAGATGCTTTTGTAAGTTTCTGGCTC +
Preference number: 6 (lower is better)
Translates to: WTGWQVWNSLKP*LWLDAFVSFWL
Trigger: GAGCCAGAAACTTACAAAAGCATCTAGCCAGAGCCAAGGCTTCAGGGAGTTCCAAACCTGCCATCCAGTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CAA 72 bp CATGGGGTTTGCGTTGAGCAAGCCTATGACGGTCCCTaGCTCTGTCTTCCAGAGATCTTTGTGAACATCTCC +
Preference number: 6 (lower is better)
Translates to: HGVCVEQAYDGP*LCLPEIFVNIS
Trigger: GGAGATGTTCACAAAGATCTCTGGAAGACAGAGCAAGGGACCGTCATAGGCTTGCTCAACGCAAACCCCATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CAA 72 bp TCTTTCAAGCCATCTTTGGGCTTCATGGGGTTTGCGTaGAGCAAGCCTATGACGGTCCCTTGCTCTGTCTTC +
Preference number: 6 (lower is better)
Translates to: SFKPSLGFMGFA*SKPMTVPCSVF
Trigger: GAAGACAGAGCAAGGGACCGTCATAGGCTTGCTCAACGCAAACCCCATGAAGCCCAAAGATGGCTTGAAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CAA 90 bp CTGAGTCAGGTCATGAAGGTCGTTCAGTTTCCAGATGCTAAACGTTaGCCCACTGGTAGCACTCTGTGGAGTGACCTTCCTGAGGATAAC +
Preference number: 6 (lower is better)
Translates to: LSQVMKVVQFPDAKR*PTGSTLWSDLPEDN
Trigger: GTTATCCTCAGGAAGGTCACTCCACAGAGTGCTACCAGTGGGCAAACGTTTAGCATCTGGAAACTGAACGACCTTCATGACCTGACTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CCA 72 bp GGATGGCAGGTTTGGAACTCCCTGAAGCCTTGGCTCTaGCTAGATGCTTTTGTAAGTTTCTGGCTCCAAATG +
Preference number: 6 (lower is better)
Translates to: GWQVWNSLKPWL*LDAFVSFWLQM
Trigger: CATTTGGAGCCAGAAACTTACAAAAGCATCTAGCCAGAGCCAAGGCTTCAGGGAGTTCCAAACCTGCCATCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CCA 72 bp TGTTGCTATTCTCCACACGCTCCTTCACTCCCAGCATaGCTCGGCCATCCATTTGCTTCCTTACAGTATTGT +
Preference number: 6 (lower is better)
Translates to: CCYSPHAPSLPA*LGHPFASLQYC
Trigger: ACAATACTGTAAGGAAGCAAATGGATGGCCGAGCCATGCTGGGAGTGAAGGAGCGTGTGGAGAATAGCAACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CAA 72 bp GGGCCGGTCCCCAGAATTCCCTGGGGACACTGTGTTTaGATTTCTAATTGTCCTGCTACATTTGTTTCCAGG +
Preference number: 6 (lower is better)
Translates to: GPVPRIPWGHCV*ISNCPATFVSR
Trigger: CCTGGAAACAAATGTAGCAGGACAATTAGAAATCAAAACACAGTGTCCCCAGGGAATTCTGGGGACCGGCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CAA 72 bp GTCATGAAGGTCGTTCAGTTTCCAGATGCTAAACGTTaGCCCACTGGTAGCACTCTGTGGAGTGACCTTCCT +
Preference number: 6 (lower is better)
Translates to: VMKVVQFPDAKR*PTGSTLWSDLP
Trigger: AGGAAGGTCACTCCACAGAGTGCTACCAGTGGGCAAACGTTTAGCATCTGGAAACTGAACGACCTTCATGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CAA 72 bp ATGGACTGGATGGCAGGTTTGGAACTCCCTGAAGCCTaGGCTCTGGCTAGATGCTTTTGTAAGTTTCTGGCT +
Preference number: 6 (lower is better)
Translates to: MDWMAGLELPEA*ALARCFCKFLA
Trigger: AGCCAGAAACTTACAAAAGCATCTAGCCAGAGCCAAGGCTTCAGGGAGTTCCAAACCTGCCATCCAGTCCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS GCA 72 bp CGCTCCTTCACTCCCAGCATGGCTCGGCCATCCATTTaGTTCCTTACAGTATTGTTTGGATCTACTTTTGTG +
Preference number: 6 (lower is better)
Translates to: RSFTPSMARPSI*FLTVLFGSTFV
Trigger: CACAAAAGTAGATCCAAACAATACTGTAAGGAAGCAAATGGATGGCCGAGCCATGCTGGGAGTGAAGGAGCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CAA 72 bp TTAACTGTCTGTGTACATGGCTCTCCATTCTTCTTCTaGGCTTTACAGGCTCCCAGGTCCATAGCTTCTCCC +
Preference number: 6 (lower is better)
Translates to: LTVCVHGSPFFF*ALQAPRSIASP
Trigger: GGGAGAAGCTATGGACCTGGGAGCCTGTAAAGCCAAGAAGAAGAATGGAGAGCCATGTACACAGACAGTTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CAA 90 bp TTTGGGCTTCATGGGGTTTGCGTTGAGCAAGCCTATGACGGTCCCTaGCTCTGTCTTCCAGAGATCTTTGTGAACATCTCCAAACAAGAA +
Preference number: 6 (lower is better)
Translates to: FGLHGVCVEQAYDGP*LCLPEIFVNISKQE
Trigger: TTCTTGTTTGGAGATGTTCACAAAGATCTCTGGAAGACAGAGCAAGGGACCGTCATAGGCTTGCTCAACGCAAACCCCATGAAGCCCAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CAA 90 bp ATTCTCCACACGCTCCTTCACTCCCAGCATGGCTCGGCCATCCATTaGCTTCCTTACAGTATTGTTTGGATCTACTTTTGTGAGAATCTG +
Preference number: 6 (lower is better)
Translates to: ILHTLLHSQHGSAIH*LPYSIVWIYFCENL
Trigger: CAGATTCTCACAAAAGTAGATCCAAACAATACTGTAAGGAAGCAAATGGATGGCCGAGCCATGCTGGGAGTGAAGGAGCGTGTGGAGAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS TCA 72 bp CTCTTTGCGCTGAGCTTCTTGTACTGGGCCTGGATGTaGTACTGGCAGTATTCACAGTCATGCAAGTTAACT +
Preference number: 6 (lower is better)
Translates to: LFALSFLYWAWM*YWQYSQSCKLT
Trigger: AGTTAACTTGCATGACTGTGAATACTGCCAGTATCACATCCAGGCCCAGTACAAGAAGCTCAGCGCAAAGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CCA 72 bp AATTCCCTGAACTCCTCAGAGCAGGACAAGCTCTTCTaGGGAATACCAAGCTTTTGTTTTGTTTCCTGGATG +
Preference number: 6 (lower is better)
Translates to: NSLNSSEQDKLF*GIPSFCFVSWM
Trigger: CATCCAGGAAACAAAACAAAAGCTTGGTATTCCCCAGAAGAGCTTGTCCTGCTCTGAGGAGTTCAGGGAATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CAA 90 bp TCATGCAAGTTAACTGTCTGTGTACATGGCTCTCCATTCTTCTTCTaGGCTTTACAGGCTCCCAGGTCCATAGCTTCTCCCATAATTAAG +
Preference number: 6 (lower is better)
Translates to: SCKLTVCVHGSPFFF*ALQAPRSIASPIIK
Trigger: CTTAATTATGGGAGAAGCTATGGACCTGGGAGCCTGTAAAGCCAAGAAGAAGAATGGAGAGCCATGTACACAGACAGTTAACTTGCATGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CAA 90 bp TTCACTCCCAGCATGGCTCGGCCATCCATTTGCTTCCTTACAGTATaGTTTGGATCTACTTTTGTGAGAATCTGGCCTTTTGCCCTTAAT +
Preference number: 6 (lower is better)
Translates to: FTPSMARPSICFLTV*FGSTFVRIWPFALN
Trigger: ATTAAGGGCAAAAGGCCAGATTCTCACAAAAGTAGATCCAAACAATACTGTAAGGAAGCAAATGGATGGCCGAGCCATGCTGGGAGTGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8
CDS CAA 72 bp AGCATGGCTCGGCCATCCATTTGCTTCCTTACAGTATaGTTTGGATCTACTTTTGTGAGAATCTGGCCTTTT +
Preference number: 6 (lower is better)
Translates to: SMARPSICFLTV*FGSTFVRIWPF
Trigger: AAAAGGCCAGATTCTCACAAAAGTAGATCCAAACAATACTGTAAGGAAGCAAATGGATGGCCGAGCCATGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027980.8
ENSMUST00000102985.8