Pregenerated sensors for MCHR1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000050164Ensembl transcript IDs: ENSMUST00000166855.3
Found 86 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCCAGGCAGCGTGCTTCAGGAGATCCACCAGCTTGGGAGAAAGACTaGCTTCTATCAACACCAATGAGAGATGGGAGGGAACGCTCGGCT | + |
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Preference number: 1 (lower is better) Translates to: PRQRASGDPPAWEKD*LLSTPMRDGRERSA Trigger: AGCCGAGCGTTCCCTCCCATCTCTCATTGGTGTTGATAGAAGGCAGTCTTTCTCCCAAGCTGGTGGATCTCCTGAAGCACGCTGCCTGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| 3UTR GCA 90 bp | AAAGAGAACGTGAAATCCGCACAGGATGCTGGAGCCCAGGCAGCGTaGTTCAGGAGATCCACCAGCTTGGGAGAAAGACTGCCTTCTATC | + |
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Preference number: 1 (lower is better) Translates to: KENVKSAQDAGAQAA*FRRSTSLGERLPSI Trigger: GATAGAAGGCAGTCTTTCTCCCAAGCTGGTGGATCTCCTGAAGCACGCTGCCTGGGCTCCAGCATCCTGTGCGGATTTCACGTTCTCTTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| 3UTR GCA 90 bp | AACAGATACAGACCCCGAGAACCAGTCAAACCACCCTTTCCTTCTTaGTCCGCTTCTATTCTGTCAAGGGGATCCCTGCAGTCTGAGGCT | + |
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Preference number: 1 (lower is better) Translates to: NRYRPREPVKPPFPS*SASILSRGSLQSEA Trigger: AGCCTCAGACTGCAGGGATCCCCTTGACAGAATAGAAGCGGAGCAAGAAGGAAAGGGTGGTTTGACTGGTTCTCGGGGTCTGTATCTGTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| 3UTR TCA 90 bp | CCTAGTTTTAAAGGAACCCAGCTAGGCACCTCCACCTTCTTCCCTTaGGAGAAAGATATATGCGAGCCAACAGATACAGACCCCGAGAAC | + |
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Preference number: 1 (lower is better) Translates to: PSFKGTQLGTSTFFP*EKDICEPTDTDPEN Trigger: GTTCTCGGGGTCTGTATCTGTTGGCTCGCATATATCTTTCTCTCAAGGGAAGAAGGTGGAGGTGCCTAGCTGGGTTCCTTTAAAACTAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| 3UTR TCA 90 bp | GAAGGCTCAAGCACAAAGATGATGCCAACATATCAGGTATTAGAGTaGCCCCTGCACATGCAGAATTCATGGATGCTCGCTCTGGATCAG | + |
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Preference number: 1 (lower is better) Translates to: EGSSTKMMPTYQVLE*PLHMQNSWMLALDQ Trigger: CTGATCCAGAGCGAGCATCCATGAATTCTGCATGTGCAGGGGTCACTCTAATACCTGATATGTTGGCATCATCTTTGTGCTTGAGCCTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| 3UTR CAA 90 bp | CAGGATGCTGGAGCCCAGGCAGCGTGCTTCAGGAGATCCACCAGCTaGGGAGAAAGACTGCCTTCTATCAACACCAATGAGAGATGGGAG | + |
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Preference number: 2 (lower is better) Translates to: QDAGAQAACFRRSTS*GERLPSINTNERWE Trigger: CTCCCATCTCTCATTGGTGTTGATAGAAGGCAGTCTTTCTCCCAAGCTGGTGGATCTCCTGAAGCACGCTGCCTGGGCTCCAGCATCCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| 3UTR-3UTR GCA 90 bp | TCCCCTAAAGAGAACGTGAAATCCGCACAGGATGCTGGAGCCCAGGCAGCGTGCCCACCCTTTCCTTCTTaGTCCGCTTCTATTCTGTCA | + |
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Preference number: 2 (lower is better) Translates to: SPKENVKSAQDAGAQAACPPFPS*SASILS Trigger: TGACAGAATAGAAGCGGAGCAAGAAGGAAAGGGTGG...GCACGCTGCCTGGGCTCCAGCATCCTGTGCGGATTTCACGTTCTCTTTAGGGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| 3UTR-3UTR GCA 90 bp | TCCCCTAAAGAGAACGTGAAATCCGCACAGGATGCTGGAGCCCAGGCAGCGTGCGCTTGGGAGAAAGACTaGCTTCTATCAACACCAATG | + |
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Preference number: 2 (lower is better) Translates to: SPKENVKSAQDAGAQAACAWEKD*LLSTPM Trigger: CATTGGTGTTGATAGAAGGCAGTCTTTCTCCCAAGC...GCACGCTGCCTGGGCTCCAGCATCCTGTGCGGATTTCACGTTCTCTTTAGGGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| 3UTR-3UTR CCA 90 bp | GTGACCCCTGCACATGCAGAATTCATGGATGCTCGCTCTGGATCAGCCATAGACGGAGATCCACCAGCTTaGGAGAAAGACTGCCTTCTA | + |
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Preference number: 2 (lower is better) Translates to: VTPAHAEFMDARSGSAIDGDPPA*EKDCLL Trigger: TAGAAGGCAGTCTTTCTCCCAAGCTGGTGGATCTCC...GTCTATGGCTGATCCAGAGCGAGCATCCATGAATTCTGCATGTGCAGGGGTCAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| 3UTR-3UTR CCA 90 bp | GTGACCCCTGCACATGCAGAATTCATGGATGCTCGCTCTGGATCAGCCATAGACAATTTGTGGGCCCCGTaGAATGTGGTTTGCTACAAG | + |
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Preference number: 2 (lower is better) Translates to: VTPAHAEFMDARSGSAIDNLWAP*NVVCYK Trigger: CTTGTAGCAAACCACATTCCACGGGGCCCACAAATT...GTCTATGGCTGATCCAGAGCGAGCATCCATGAATTCTGCATGTGCAGGGGTCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| 3UTR-3UTR TCA 90 bp | TTATTTCATTCCCATTTGGGAGTGGAAGGCTCAAGCACAAAGATGATGCCAACAGGATCAGCCATAGACTaGCAGCTGTGCCCTATGAAG | + |
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Preference number: 2 (lower is better) Translates to: LFHSHLGVEGSSTKMMPTGSAID*QLCPMK Trigger: CTTCATAGGGCACAGCTGTCAGTCTATGGCTGATCC...TGTTGGCATCATCTTTGTGCTTGAGCCTTCCACTCCCAAATGGGAATGAAATAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| 3UTR CCA 72 bp | CTGGCTGCAAGCCTCCCTAGCAATTTGTGGGCCCCGTaGAATGTGGTTTGCTACAAGCCCCCAGCCTCCAGC | + |
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Preference number: 3 (lower is better) Translates to: LAASLPSNLWAP*NVVCYKPPASS Trigger: GCTGGAGGCTGGGGGCTTGTAGCAAACCACATTCCACGGGGCCCACAAATTGCTAGGGAGGCTTGCAGCCAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| 3UTR GCA 72 bp | GTGAAATCCGCACAGGATGCTGGAGCCCAGGCAGCGTaGTTCAGGAGATCCACCAGCTTGGGAGAAAGACTG | + |
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Preference number: 3 (lower is better) Translates to: VKSAQDAGAQAA*FRRSTSLGERL Trigger: CAGTCTTTCTCCCAAGCTGGTGGATCTCCTGAAGCACGCTGCCTGGGCTCCAGCATCCTGTGCGGATTTCAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| 3UTR CCA 72 bp | CAAGCCTCCCTAGCAATTTGTGGGCCCCGTGGAATGTaGTTTGCTACAAGCCCCCAGCCTCCAGCTTCTGCA | + |
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Preference number: 3 (lower is better) Translates to: QASLAICGPRGM*FATSPQPPASA Trigger: TGCAGAAGCTGGAGGCTGGGGGCTTGTAGCAAACCACATTCCACGGGGCCCACAAATTGCTAGGGAGGCTTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| 3UTR CCA 72 bp | GAGCCCAGGCAGCGTGCTTCAGGAGATCCACCAGCTTaGGAGAAAGACTGCCTTCTATCAACACCAATGAGA | + |
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Preference number: 3 (lower is better) Translates to: EPRQRASGDPPA*EKDCLLSTPMR Trigger: TCTCATTGGTGTTGATAGAAGGCAGTCTTTCTCCCAAGCTGGTGGATCTCCTGAAGCACGCTGCCTGGGCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| 3UTR CCA 72 bp | GGAGAAAGACTGCCTTCTATCAACACCAATGAGAGATaGGAGGGAACGCTCGGCTTGCCCAGTCTCACAGTA | + |
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Preference number: 3 (lower is better) Translates to: GERLPSINTNER*EGTLGLPSLTV Trigger: TACTGTGAGACTGGGCAAGCCGAGCGTTCCCTCCCATCTCTCATTGGTGTTGATAGAAGGCAGTCTTTCTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| 3UTR-3UTR CAA 90 bp | TTTTTAAACTCCTGTGGGCTCAGAGCCCACACCCCAGTGTCAACATGCATCCCCCTCCACCTTCTTCCCTaGAGAGAAAGATATATGCGA | + |
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Preference number: 3 (lower is better) Translates to: FLNSCGLRAHTPVSTCIPLHLLP*RERYMR Trigger: TCGCATATATCTTTCTCTCAAGGGAAGAAGGTGGAG...GGGGATGCATGTTGACACTGGGGTGTGGGCTCTGAGCCCACAGGAGTTTAAAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| 3UTR TCA 72 bp | GAATTCATGGATGCTCGCTCTGGATCAGCCATAGACTaGCAGCTGTGCCCTATGAAGAGAATGTCGCTGTCA | + |
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Preference number: 3 (lower is better) Translates to: EFMDARSGSAID*QLCPMKRMSLS Trigger: TGACAGCGACATTCTCTTCATAGGGCACAGCTGTCAGTCTATGGCTGATCCAGAGCGAGCATCCATGAATTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| 3UTR TCA 72 bp | AAAGGAACCCAGCTAGGCACCTCCACCTTCTTCCCTTaGGAGAAAGATATATGCGAGCCAACAGATACAGAC | + |
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Preference number: 3 (lower is better) Translates to: KGTQLGTSTFFP*EKDICEPTDTD Trigger: GTCTGTATCTGTTGGCTCGCATATATCTTTCTCTCAAGGGAAGAAGGTGGAGGTGCCTAGCTGGGTTCCTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| 3UTR GCA 72 bp | TTTTTATTAGTTTCAAGATCCACATCCACCCCAGGTTaGCTTGTCATTCTCGGTGATTGGATCTCTCTCGAC | + |
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Preference number: 3 (lower is better) Translates to: FLLVSRSTSTPG*LVILGDWISLD Trigger: GTCGAGAGAGATCCAATCACCGAGAATGACAAGGCAACCTGGGGTGGATGTGGATCTTGAAACTAATAAAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| 3UTR TCA 72 bp | CAGCTGTGCCCTATGAAGAGAATGTCGCTGTCACTGTaGAAACCCCTTTTTATTAGTTTCAAGATCCACATC | + |
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Preference number: 3 (lower is better) Translates to: QLCPMKRMSLSL*KPLFISFKIHI Trigger: GATGTGGATCTTGAAACTAATAAAAAGGGGTTTTCACAGTGACAGCGACATTCTCTTCATAGGGCACAGCTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS-3UTR CCA 90 bp | TCCCCTAAAGAGAACGTGAAATCCGCACAGGATGCTGGAGCCCAGGCAGCGTGCGGCAGATCACCAGGGTaGCCATGGAGGGCTTCCGGA | + |
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Preference number: 4 (lower is better) Translates to: SPKENVKSAQDAGAQAACGRSPG*PWRASG Trigger: TCCGGAAGCCCTCCATGGCCACCCTGGTGATCTGCC...GCACGCTGCCTGGGCTCCAGCATCCTGTGCGGATTTCACGTTCTCTTTAGGGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS-3UTR TCA 90 bp | TCCCCTAAAGAGAACGTGAAATCCGCACAGGATGCTGGAGCCCAGGCAGCGTGCCTGTCTGAGCATTGCTaGCCGTGCGAAGCTGCCCCT | + |
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Preference number: 4 (lower is better) Translates to: SPKENVKSAQDAGAQAACLSEHC*PCEAAP Trigger: AGGGGCAGCTTCGCACGGTCAGCAATGCTCAGACAG...GCACGCTGCCTGGGCTCCAGCATCCTGTGCGGATTTCACGTTCTCTTTAGGGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS-3UTR GCA 90 bp | CAAGCCTCCCTAGCAATTTGTGGGCCCCGTGGAATGTGGTTTGCTACAAGCCCCAGGAGACACTCCTTGTaGGAGGAGGTGGCCCCGCCA | + |
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Preference number: 4 (lower is better) Translates to: QASLAICGPRGMWFATSPRRHSL*EEVAPP Trigger: TGGCGGGGCCACCTCCTCGCACAAGGAGTGTCTCCT...GGGGCTTGTAGCAAACCACATTCCACGGGGCCCACAAATTGCTAGGGAGGCTTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS-3UTR CCA 90 bp | GCACAGGATGCTGGAGCCCAGGCAGCGTGCTTCAGGAGATCCACCAGCTTGGGAAGATGGGATGGACGGTaGCCAAGTAGCGGTCAATGG | + |
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Preference number: 4 (lower is better) Translates to: AQDAGAQAACFRRSTSLGRWDGR*PSSGQW Trigger: CCATTGACCGCTACTTGGCCACCGTCCATCCCATCT...TCCCAAGCTGGTGGATCTCCTGAAGCACGCTGCCTGGGCTCCAGCATCCTGTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS-3UTR CCA 90 bp | GCACAGGATGCTGGAGCCCAGGCAGCGTGCTTCAGGAGATCCACCAGCTTGGGAACTTGGTGGAGGAGATaGGATGGACGGTGGCCAAGT | + |
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Preference number: 4 (lower is better) Translates to: AQDAGAQAACFRRSTSLGTWWRR*DGRWPS Trigger: ACTTGGCCACCGTCCATCCCATCTCCTCCACCAAGT...TCCCAAGCTGGTGGATCTCCTGAAGCACGCTGCCTGGGCTCCAGCATCCTGTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS-3UTR CCA 90 bp | ACAGATACAGACCCCGAGAACCAGTCAAACCACCCTTTCCTTCTTGCTCCGCTTGTGCGAAGCTGCCCCTaGGCCGCGGGCTTCACCGAC | + |
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Preference number: 4 (lower is better) Translates to: TDTDPENQSNHPFLLAPLVRSCP*AAGFTD Trigger: GTCGGTGAAGCCCGCGGCCCAGGGGCAGCTTCGCAC...AAGCGGAGCAAGAAGGAAAGGGTGGTTTGACTGGTTCTCGGGGTCTGTATCTGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS-3UTR TCA 90 bp | CCCCAAACCTGGCTGCAAGCCTCCCTAGCAATTTGTGGGCCCCGTGGAATGTGGGGATGTAGGTGCTGGTaGACTGACTGTTGGCGTCCA | + |
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Preference number: 4 (lower is better) Translates to: PQTWLQASLAICGPRGMWGCRCW*TDCWRP Trigger: TGGACGCCAACAGTCAGTTCACCAGCACCTACATCC...CCACATTCCACGGGGCCCACAAATTGCTAGGGAGGCTTGCAGCCAGGTTTGGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS-3UTR TCA 90 bp | CAAGCCTCCCTAGCAATTTGTGGGCCCCGTGGAATGTGGTTTGCTACAAGCCCCTCCTCGTCAGCTGTCTaGGCATTGCTGACCGTGCGA | + |
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Preference number: 4 (lower is better) Translates to: QASLAICGPRGMWFATSPSSSAV*ALLTVR Trigger: TCGCACGGTCAGCAATGCTCAGACAGCTGACGAGGA...GGGGCTTGTAGCAAACCACATTCCACGGGGCCCACAAATTGCTAGGGAGGCTTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS-3UTR GCA 90 bp | CAAGCCTCCCTAGCAATTTGTGGGCCCCGTGGAATGTGGTTTGCTACAAGCCCCAGATGTCAGGGACGTTaGTGCACCAGTGCAGCTTGG | + |
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Preference number: 4 (lower is better) Translates to: QASLAICGPRGMWFATSPRCQGR*CTSAAW Trigger: CCAAGCTGCACTGGTGCAGCAACGTCCCTGACATCT...GGGGCTTGTAGCAAACCACATTCCACGGGGCCCACAAATTGCTAGGGAGGCTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS-3UTR CCA 90 bp | CCTTCTATCAACACCAATGAGAGATGGGAGGGAACGCTCGGCTTGCCCAGTCTCGCTTCCGGAACTTGGTaGAGGAGATGGGATGGACGG | + |
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Preference number: 4 (lower is better) Translates to: PSINTNERWEGTLGLPSLASGTW*RRWDGR Trigger: CCGTCCATCCCATCTCCTCCACCAAGTTCCGGAAGC...GAGACTGGGCAAGCCGAGCGTTCCCTCCCATCTCTCATTGGTGTTGATAGAAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS-3UTR TCA 90 bp | GGAGATCCACCAGCTTGGGAGAAAGACTGCCTTCTATCAACACCAATGAGAGATAGCCGGATGCTGCGTTaGGAGGCTGGGGCCACCGAA | + |
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Preference number: 4 (lower is better) Translates to: GDPPAWEKDCLLSTPMRDSRMLR*EAGATE Trigger: TTCGGTGGCCCCAGCCTCTCAACGCAGCATCCGGCT...ATCTCTCATTGGTGTTGATAGAAGGCAGTCTTTCTCCCAAGCTGGTGGATCTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS-3UTR CCA 90 bp | TGCTGGAGCCCAGGCAGCGTGCTTCAGGAGATCCACCAGCTTGGGAGAAAGACTTGCCCAGGAGACAGATaGTACCAAACACTGAAGGCA | + |
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Preference number: 4 (lower is better) Translates to: CWSPGSVLQEIHQLGRKTCPGDR*YQTLKA Trigger: TGCCTTCAGTGTTTGGTACCATCTGTCTCCTGGGCA...AGTCTTTCTCCCAAGCTGGTGGATCTCCTGAAGCACGCTGCCTGGGCTCCAGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS-3UTR CCA 90 bp | CCCCAAACCTGGCTGCAAGCCTCCCTAGCAATTTGTGGGCCCCGTGGAATGTGGCCATTACCCATGAGCTaGTGGATCATGAAAGGCATG | + |
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Preference number: 4 (lower is better) Translates to: PQTWLQASLAICGPRGMWPLPMS*WIMKGM Trigger: CATGCCTTTCATGATCCACCAGCTCATGGGTAATGG...CCACATTCCACGGGGCCCACAAATTGCTAGGGAGGCTTGCAGCCAGGTTTGGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS-3UTR CCA 90 bp | GTCAAACCACCCTTTCCTTCTTGCTCCGCTTCTATTCTGTCAAGGGGATCCCTGTCACCAGGGTGGCCATaGAGGGCTTCCGGAACTTGG | + |
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Preference number: 4 (lower is better) Translates to: VKPPFPSCSASILSRGSLSPGWP*RASGTW Trigger: CCAAGTTCCGGAAGCCCTCCATGGCCACCCTGGTGA...CAGGGATCCCCTTGACAGAATAGAAGCGGAGCAAGAAGGAAAGGGTGGTTTGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| 3UTR CAA 72 bp | GGAGCCCAGGCAGCGTGCTTCAGGAGATCCACCAGCTaGGGAGAAAGACTGCCTTCTATCAACACCAATGAG | + |
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Preference number: 4 (lower is better) Translates to: GAQAACFRRSTS*GERLPSINTNE Trigger: CTCATTGGTGTTGATAGAAGGCAGTCTTTCTCCCAAGCTGGTGGATCTCCTGAAGCACGCTGCCTGGGCTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS-3UTR CCA 90 bp | CAGCGTGCTTCAGGAGATCCACCAGCTTGGGAGAAAGACTGCCTTCTATCAACACCAGACAGATGGCAATaGCTGTGCGGGTCACCCTCT | + |
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Preference number: 4 (lower is better) Translates to: QRASGDPPAWEKDCLLSTPDRWQ*LCGSPS Trigger: AGAGGGTGACCCGCACAGCCATTGCCATCTGTCTGG...TGTTGATAGAAGGCAGTCTTTCTCCCAAGCTGGTGGATCTCCTGAAGCACGCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS-3UTR GCA 90 bp | GACCCCTGCACATGCAGAATTCATGGATGCTCGCTCTGGATCAGCCATAGACTGTGTCAGGGACGTTGCTaGACCAGTGCAGCTTGGATT | + |
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Preference number: 4 (lower is better) Translates to: DPCTCRIHGCSLWISHRLCQGRC*TSAAWI Trigger: AATCCAAGCTGCACTGGTGCAGCAACGTCCCTGACA...CAGTCTATGGCTGATCCAGAGCGAGCATCCATGAATTCTGCATGTGCAGGGGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS-3UTR GCA 90 bp | AACCCAGCTAGGCACCTCCACCTTCTTCCCTTGAGAGAAAGATATATGCGAGCCAGATGGCAATGGCTGTaGGGGTCACCCTCTTTGTCC | + |
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Preference number: 4 (lower is better) Translates to: NPARHLHLLPLRERYMRARWQWL*GSPSLS Trigger: GGACAAAGAGGGTGACCCGCACAGCCATTGCCATCT...GGCTCGCATATATCTTTCTCTCAAGGGAAGAAGGTGGAGGTGCCTAGCTGGGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS-3UTR CCA 90 bp | GTCAAACCACCCTTTCCTTCTTGCTCCGCTTCTATTCTGTCAAGGGGATCCCTGCATCGGAGATGTTGCTaGCATTGGGGCCAGTGGACA | + |
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Preference number: 4 (lower is better) Translates to: VKPPFPSCSASILSRGSLHRRCC*HWGQWT Trigger: TGTCCACTGGCCCCAATGCCAGCAACATCTCCGATG...CAGGGATCCCCTTGACAGAATAGAAGCGGAGCAAGAAGGAAAGGGTGGTTTGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS-3UTR CCA 90 bp | CAGTGTCAACATGCATCCCCTAAAGAGAACGTGAAATCCGCACAGGATGCTGGAAGATGTTGCTGGCATTaGGGCCAGTGGACAGCAACG | + |
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Preference number: 4 (lower is better) Translates to: QCQHASPKENVKSAQDAGRCCWH*GQWTAT Trigger: CGTTGCTGTCCACTGGCCCCAATGCCAGCAACATCT...TCCAGCATCCTGTGCGGATTTCACGTTCTCTTTAGGGGATGCATGTTGACACTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS-3UTR CCA 90 bp | GACCCCTGCACATGCAGAATTCATGGATGCTCGCTCTGGATCAGCCATAGACTGTTACCCATGAGCTGGTaGATCATGAAAGGCATGCCC | + |
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Preference number: 4 (lower is better) Translates to: DPCTCRIHGCSLWISHRLLPMSW*IMKGMP Trigger: GGGCATGCCTTTCATGATCCACCAGCTCATGGGTAA...CAGTCTATGGCTGATCCAGAGCGAGCATCCATGAATTCTGCATGTGCAGGGGTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS-3UTR GCA 90 bp | ACAGATACAGACCCCGAGAACCAGTCAAACCACCCTTTCCTTCTTGCTCCGCTTTGGAGTTTCCCACAATaGCCAGGAGACAGATGGTAC | + |
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Preference number: 4 (lower is better) Translates to: TDTDPENQSNHPFLLAPLWSFPQ*PGDRWY Trigger: GTACCATCTGTCTCCTGGGCATTGTGGGAAACTCCA...AAGCGGAGCAAGAAGGAAAGGGTGGTTTGACTGGTTCTCGGGGTCTGTATCTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS-3UTR CCA 90 bp | AGTGACCCCTGCACATGCAGAATTCATGGATGCTCGCTCTGGATCAGCCATAGATGCACCAGTGCAGCTTaGATTTCTTCACCACGGCAA | + |
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Preference number: 4 (lower is better) Translates to: SDPCTCRIHGCSLWISHRCTSAA*ISSPRQ Trigger: TTGCCGTGGTGAAGAAATCCAAGCTGCACTGGTGCA...TCTATGGCTGATCCAGAGCGAGCATCCATGAATTCTGCATGTGCAGGGGTCACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS-3UTR CCA 90 bp | CAGTGTCAACATGCATCCCCTAAAGAGAACGTGAAATCCGCACAGGATGCTGGAAGAAGACCAGACAGATaGCAATGGCTGTGCGGGTCA | + |
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Preference number: 4 (lower is better) Translates to: QCQHASPKENVKSAQDAGRRPDR*QWLCGS Trigger: TGACCCGCACAGCCATTGCCATCTGTCTGGTCTTCT...TCCAGCATCCTGTGCGGATTTCACGTTCTCTTTAGGGGATGCATGTTGACACTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS-3UTR GCA 90 bp | ATCCTAGCCCTGCCTAGTTTTAAAGGAACCCAGCTAGGCACCTCCACCTTCTTCCCACCGAAGACGTCATaGGCTGTAGTATTTTCACGT | + |
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Preference number: 4 (lower is better) Translates to: ILALPSFKGTQLGTSTFFPPKTS*AVVFSR Trigger: ACGTGAAAATACTACAGCGCATGACGTCTTCGGTGG...GAAGAAGGTGGAGGTGCCTAGCTGGGTTCCTTTAAAACTAGGCAGGGCTAGGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS-3UTR TCA 90 bp | TTATTTCATTCCCATTTGGGAGTGGAAGGCTCAAGCACAAAGATGATGCCAACAGATGGTACCAAACACTaGAGGCATGATGATGTTGAT | + |
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Preference number: 4 (lower is better) Translates to: LFHSHLGVEGSSTKMMPTDGTKH*RHDDVD Trigger: ATCAACATCATCATGCCTTCAGTGTTTGGTACCATC...TGTTGGCATCATCTTTGTGCTTGAGCCTTCCACTCCCAAATGGGAATGAAATAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS TCA 90 bp | TGCCTTTGCTTTCTGTCCTCTCCTCGTCAGCTGTCTGAGCATTGCTaGCCGTGCGAAGCTGCCCCTGGGCCGCGGGCTTCACCGACAGCA | + |
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Preference number: 5 (lower is better) Translates to: CLCFLSSPRQLSEHC*PCEAAPGPRASPTA Trigger: TGCTGTCGGTGAAGCCCGCGGCCCAGGGGCAGCTTCGCACGGTCAGCAATGCTCAGACAGCTGACGAGGAGAGGACAGAAAGCAAAGGCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS-3UTR CAA 90 bp | TGCTGGAGCCCAGGCAGCGTGCTTCAGGAGATCCACCAGCTTGGGAGAAAGACTAAGCCGGATGCTGCGTaGAGAGGCTGGGGCCACCGA | + |
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Preference number: 5 (lower is better) Translates to: CWSPGSVLQEIHQLGRKTKPDAA*RGWGHR Trigger: TCGGTGGCCCCAGCCTCTCAACGCAGCATCCGGCTT...AGTCTTTCTCCCAAGCTGGTGGATCTCCTGAAGCACGCTGCCTGGGCTCCAGCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS GCA 90 bp | TGGCAATGGCTGTGCGGGTCACCCTCTTTGTCCGAAGCCGGATGCTaGGTTGAGAGGCTGGGGCCACCGAAGACGTCATGCGCTGTAGTA | + |
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Preference number: 5 (lower is better) Translates to: WQWLCGSPSLSEAGC*VERLGPPKTSCAVV Trigger: TACTACAGCGCATGACGTCTTCGGTGGCCCCAGCCTCTCAACGCAGCATCCGGCTTCGGACAAAGAGGGTGACCCGCACAGCCATTGCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS GCA 90 bp | AGATGGCAATGGCTGTGCGGGTCACCCTCTTTGTCCGAAGCCGGATaGTGCGTTGAGAGGCTGGGGCCACCGAAGACGTCATGCGCTGTA | + |
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Preference number: 5 (lower is better) Translates to: RWQWLCGSPSLSEAG*CVERLGPPKTSCAV Trigger: TACAGCGCATGACGTCTTCGGTGGCCCCAGCCTCTCAACGCAGCATCCGGCTTCGGACAAAGAGGGTGACCCGCACAGCCATTGCCATCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS CCA 90 bp | GCAGCACGTAGTAGGGCGCCCAGCACACAAAGAAGACCAGACAGATaGCAATGGCTGTGCGGGTCACCCTCTTTGTCCGAAGCCGGATGC | + |
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Preference number: 5 (lower is better) Translates to: AARSRAPSTQRRPDR*QWLCGSPSLSEAGC Trigger: GCATCCGGCTTCGGACAAAGAGGGTGACCCGCACAGCCATTGCCATCTGTCTGGTCTTCTTTGTGTGCTGGGCGCCCTACTACGTGCTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS-3UTR CAA 90 bp | TGCTGGAGCCCAGGCAGCGTGCTTCAGGAGATCCACCAGCTTGGGAGAAAGACTTGGCCATCGGAGATGTaGCTGGCATTGGGGCCAGTG | + |
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Preference number: 5 (lower is better) Translates to: CWSPGSVLQEIHQLGRKTWPSEM*LALGPV Trigger: CACTGGCCCCAATGCCAGCAACATCTCCGATGGCCA...AGTCTTTCTCCCAAGCTGGTGGATCTCCTGAAGCACGCTGCCTGGGCTCCAGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS TCA 90 bp | ATGGCTGTGCGGGTCACCCTCTTTGTCCGAAGCCGGATGCTGCGTTaGGAGGCTGGGGCCACCGAAGACGTCATGCGCTGTAGTATTTTC | + |
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Preference number: 5 (lower is better) Translates to: MAVRVTLFVRSRMLR*EAGATEDVMRCSIF Trigger: GAAAATACTACAGCGCATGACGTCTTCGGTGGCCCCAGCCTCTCAACGCAGCATCCGGCTTCGGACAAAGAGGGTGACCCGCACAGCCAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS CCA 90 bp | CGTAGTAGGGCGCCCAGCACACAAAGAAGACCAGACAGATGGCAATaGCTGTGCGGGTCACCCTCTTTGTCCGAAGCCGGATGCTGCGTT | + |
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Preference number: 5 (lower is better) Translates to: RSRAPSTQRRPDRWQ*LCGSPSLSEAGCCV Trigger: AACGCAGCATCCGGCTTCGGACAAAGAGGGTGACCCGCACAGCCATTGCCATCTGTCTGGTCTTCTTTGTGTGCTGGGCGCCCTACTACG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS-3UTR CAA 90 bp | CCCCAAACCTGGCTGCAAGCCTCCCTAGCAATTTGTGGGCCCCGTGGAATGTGGAAGATGTCAGGGACGTaGCTGCACCAGTGCAGCTTG | + |
|
Preference number: 5 (lower is better) Translates to: PQTWLQASLAICGPRGMWKMSGT*LHQCSL Trigger: CAAGCTGCACTGGTGCAGCAACGTCCCTGACATCTT...CCACATTCCACGGGGCCCACAAATTGCTAGGGAGGCTTGCAGCCAGGTTTGGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS-3UTR CAA 90 bp | AGTGACCCCTGCACATGCAGAATTCATGGATGCTCGCTCTGGATCAGCCATAGATGTAGGAGACACTCCTaGTGCGAGGAGGTGGCCCCG | + |
|
Preference number: 5 (lower is better) Translates to: SDPCTCRIHGCSLWISHRCRRHS*CEEVAP Trigger: CGGGGCCACCTCCTCGCACAAGGAGTGTCTCCTACA...TCTATGGCTGATCCAGAGCGAGCATCCATGAATTCTGCATGTGCAGGGGTCACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS-3UTR CAA 90 bp | ACAGATACAGACCCCGAGAACCAGTCAAACCACCCTTTCCTTCTTGCTCCGCTTTGCGGGTCACCCTCTTaGTCCGAAGCCGGATGCTGC | + |
|
Preference number: 5 (lower is better) Translates to: TDTDPENQSNHPFLLAPLCGSPS*SEAGCC Trigger: GCAGCATCCGGCTTCGGACAAAGAGGGTGACCCGCA...AAGCGGAGCAAGAAGGAAAGGGTGGTTTGACTGGTTCTCGGGGTCTGTATCTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS-3UTR CAA 90 bp | ACAGATACAGACCCCGAGAACCAGTCAAACCACCCTTTCCTTCTTGCTCCGCTTGAGATGTTGCTGGCATaGGGGCCAGTGGACAGCAAC | + |
|
Preference number: 5 (lower is better) Translates to: TDTDPENQSNHPFLLAPLEMLLA*GPVDSN Trigger: GTTGCTGTCCACTGGCCCCAATGCCAGCAACATCTC...AAGCGGAGCAAGAAGGAAAGGGTGGTTTGACTGGTTCTCGGGGTCTGTATCTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS GCA 90 bp | TTGGCGTCCATGGCTGTGATGAGGGTGCACATGGTTTCCCCAAAGTaGCAGACACCATTACCCATGAGCTGGTGGATCATGAAAGGCATG | + |
|
Preference number: 5 (lower is better) Translates to: LASMAVMRVHMVSPK*QTPLPMSWWIMKGM Trigger: CATGCCTTTCATGATCCACCAGCTCATGGGTAATGGTGTCTGGCACTTTGGGGAAACCATGTGCACCCTCATCACAGCCATGGACGCCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS CCA 90 bp | GTGCACATGGTTTCCCCAAAGTGCCAGACACCATTACCCATGAGCTaGTGGATCATGAAAGGCATGCCCAGCAGGAAAAGCAGATCCACC | + |
|
Preference number: 5 (lower is better) Translates to: VHMVSPKCQTPLPMS*WIMKGMPSRKSRST Trigger: GGTGGATCTGCTTTTCCTGCTGGGCATGCCTTTCATGATCCACCAGCTCATGGGTAATGGTGTCTGGCACTTTGGGGAAACCATGTGCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS-3UTR CAA 90 bp | AGTGACCCCTGCACATGCAGAATTCATGGATGCTCGCTCTGGATCAGCCATAGACTGCACCAGTGCAGCTaGGATTTCTTCACCACGGCA | + |
|
Preference number: 5 (lower is better) Translates to: SDPCTCRIHGCSLWISHRLHQCS*DFFTTA Trigger: TGCCGTGGTGAAGAAATCCAAGCTGCACTGGTGCAG...TCTATGGCTGATCCAGAGCGAGCATCCATGAATTCTGCATGTGCAGGGGTCACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS-3UTR CAA 90 bp | GGAGATCCACCAGCTTGGGAGAAAGACTGCCTTCTATCAACACCAATGAGAGATGAGGGCTTCCGGAACTaGGTGGAGGAGATGGGATGG | + |
|
Preference number: 5 (lower is better) Translates to: GDPPAWEKDCLLSTPMRDEGFRN*VEEMGW Trigger: CCATCCCATCTCCTCCACCAAGTTCCGGAAGCCCTC...ATCTCTCATTGGTGTTGATAGAAGGCAGTCTTTCTCCCAAGCTGGTGGATCTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS CCA 90 bp | AGGCATGATGATGTTGATGTAGGAGACACTCCTTGTGCGAGGAGGTaGCCCCGCCAATGTGAAATTATCCTGGCCATCGGAGATGTTGCT | + |
|
Preference number: 5 (lower is better) Translates to: RHDDVDVGDTPCARR*PRQCEIILAIGDVA Trigger: AGCAACATCTCCGATGGCCAGGATAATTTCACATTGGCGGGGCCACCTCCTCGCACAAGGAGTGTCTCCTACATCAACATCATCATGCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS CCA 90 bp | CACATGGTTTCCCCAAAGTGCCAGACACCATTACCCATGAGCTGGTaGATCATGAAAGGCATGCCCAGCAGGAAAAGCAGATCCACCACA | + |
|
Preference number: 5 (lower is better) Translates to: HMVSPKCQTPLPMSW*IMKGMPSRKSRSTT Trigger: TGTGGTGGATCTGCTTTTCCTGCTGGGCATGCCTTTCATGATCCACCAGCTCATGGGTAATGGTGTCTGGCACTTTGGGGAAACCATGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS GCA 90 bp | ACAGAGAGGTTGATGATGAAGATGTCAGGGACGTTGCTGCACCAGTaGAGCTTGGATTTCTTCACCACGGCAAAAATGACTGTGGAGTTT | + |
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Preference number: 5 (lower is better) Translates to: TERLMMKMSGTLLHQ*SLDFFTTAKMTVEF Trigger: AAACTCCACAGTCATTTTTGCCGTGGTGAAGAAATCCAAGCTGCACTGGTGCAGCAACGTCCCTGACATCTTCATCATCAACCTCTCTGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS CAA 72 bp | GCGGGTCACCCTCTTTGTCCGAAGCCGGATGCTGCGTaGAGAGGCTGGGGCCACCGAAGACGTCATGCGCTG | + |
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Preference number: 6 (lower is better) Translates to: AGHPLCPKPDAA*RGWGHRRRHAL Trigger: CAGCGCATGACGTCTTCGGTGGCCCCAGCCTCTCAACGCAGCATCCGGCTTCGGACAAAGAGGGTGACCCGC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS TCA 72 bp | CGGGTCACCCTCTTTGTCCGAAGCCGGATGCTGCGTTaGGAGGCTGGGGCCACCGAAGACGTCATGCGCTGT | + |
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Preference number: 6 (lower is better) Translates to: RVTLFVRSRMLR*EAGATEDVMRC Trigger: ACAGCGCATGACGTCTTCGGTGGCCCCAGCCTCTCAACGCAGCATCCGGCTTCGGACAAAGAGGGTGACCCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS GCA 72 bp | CTGTGCGGGTCACCCTCTTTGTCCGAAGCCGGATGCTaGGTTGAGAGGCTGGGGCCACCGAAGACGTCATGC | + |
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Preference number: 6 (lower is better) Translates to: LCGSPSLSEAGC*VERLGPPKTSC Trigger: GCATGACGTCTTCGGTGGCCCCAGCCTCTCAACGCAGCATCCGGCTTCGGACAAAGAGGGTGACCCGCACAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS GCA 72 bp | TGGCTGTGCGGGTCACCCTCTTTGTCCGAAGCCGGATaGTGCGTTGAGAGGCTGGGGCCACCGAAGACGTCA | + |
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Preference number: 6 (lower is better) Translates to: WLCGSPSLSEAG*CVERLGPPKTS Trigger: TGACGTCTTCGGTGGCCCCAGCCTCTCAACGCAGCATCCGGCTTCGGACAAAGAGGGTGACCCGCACAGCCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS CCA 72 bp | TCACCAGGGTGGCCATGGAGGGCTTCCGGAACTTGGTaGAGGAGATGGGATGGACGGTGGCCAAGTAGCGGT | + |
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Preference number: 6 (lower is better) Translates to: SPGWPWRASGTW*RRWDGRWPSSG Trigger: ACCGCTACTTGGCCACCGTCCATCCCATCTCCTCCACCAAGTTCCGGAAGCCCTCCATGGCCACCCTGGTGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS CAA 72 bp | CCAGACAGATGGCAATGGCTGTGCGGGTCACCCTCTTaGTCCGAAGCCGGATGCTGCGTTGAGAGGCTGGGG | + |
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Preference number: 6 (lower is better) Translates to: PDRWQWLCGSPS*SEAGCCVERLG Trigger: CCCCAGCCTCTCAACGCAGCATCCGGCTTCGGACAAAGAGGGTGACCCGCACAGCCATTGCCATCTGTCTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS CAA 90 bp | CAAAGAAGACCAGACAGATGGCAATGGCTGTGCGGGTCACCCTCTTaGTCCGAAGCCGGATGCTGCGTTGAGAGGCTGGGGCCACCGAAG | + |
|
Preference number: 6 (lower is better) Translates to: QRRPDRWQWLCGSPS*SEAGCCVERLGPPK Trigger: CTTCGGTGGCCCCAGCCTCTCAACGCAGCATCCGGCTTCGGACAAAGAGGGTGACCCGCACAGCCATTGCCATCTGTCTGGTCTTCTTTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS CCA 72 bp | GCGCCCAGCACACAAAGAAGACCAGACAGATGGCAATaGCTGTGCGGGTCACCCTCTTTGTCCGAAGCCGGA | + |
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Preference number: 6 (lower is better) Translates to: APSTQRRPDRWQ*LCGSPSLSEAG Trigger: TCCGGCTTCGGACAAAGAGGGTGACCCGCACAGCCATTGCCATCTGTCTGGTCTTCTTTGTGTGCTGGGCGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS CCA 72 bp | AGTAGGGCGCCCAGCACACAAAGAAGACCAGACAGATaGCAATGGCTGTGCGGGTCACCCTCTTTGTCCGAA | + |
|
Preference number: 6 (lower is better) Translates to: SRAPSTQRRPDR*QWLCGSPSLSE Trigger: TTCGGACAAAGAGGGTGACCCGCACAGCCATTGCCATCTGTCTGGTCTTCTTTGTGTGCTGGGCGCCCTACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS CAA 72 bp | GTGAAATTATCCTGGCCATCGGAGATGTTGCTGGCATaGGGGCCAGTGGACAGCAACGAGGCTTGCAGATCC | + |
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Preference number: 6 (lower is better) Translates to: VKLSWPSEMLLA*GPVDSNEACRS Trigger: GGATCTGCAAGCCTCGTTGCTGTCCACTGGCCCCAATGCCAGCAACATCTCCGATGGCCAGGATAATTTCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS CCA 72 bp | GATGTTGATGTAGGAGACACTCCTTGTGCGAGGAGGTaGCCCCGCCAATGTGAAATTATCCTGGCCATCGGA | + |
|
Preference number: 6 (lower is better) Translates to: DVDVGDTPCARR*PRQCEIILAIG Trigger: TCCGATGGCCAGGATAATTTCACATTGGCGGGGCCACCTCCTCGCACAAGGAGTGTCTCCTACATCAACATC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS GCA 72 bp | ATGGCTGTGATGAGGGTGCACATGGTTTCCCCAAAGTaGCAGACACCATTACCCATGAGCTGGTGGATCATG | + |
|
Preference number: 6 (lower is better) Translates to: MAVMRVHMVSPK*QTPLPMSWWIM Trigger: CATGATCCACCAGCTCATGGGTAATGGTGTCTGGCACTTTGGGGAAACCATGTGCACCCTCATCACAGCCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS CCA 72 bp | TCCCCAAAGTGCCAGACACCATTACCCATGAGCTGGTaGATCATGAAAGGCATGCCCAGCAGGAAAAGCAGA | + |
|
Preference number: 6 (lower is better) Translates to: SPKCQTPLPMSW*IMKGMPSRKSR Trigger: TCTGCTTTTCCTGCTGGGCATGCCTTTCATGATCCACCAGCTCATGGGTAATGGTGTCTGGCACTTTGGGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS CCA 72 bp | GTTTCCCCAAAGTGCCAGACACCATTACCCATGAGCTaGTGGATCATGAAAGGCATGCCCAGCAGGAAAAGC | + |
|
Preference number: 6 (lower is better) Translates to: VSPKCQTPLPMS*WIMKGMPSRKS Trigger: GCTTTTCCTGCTGGGCATGCCTTTCATGATCCACCAGCTCATGGGTAATGGTGTCTGGCACTTTGGGGAAAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS CAA 72 bp | ACCACAGAGAGGTTGATGATGAAGATGTCAGGGACGTaGCTGCACCAGTGCAGCTTGGATTTCTTCACCACG | + |
|
Preference number: 6 (lower is better) Translates to: TTERLMMKMSGT*LHQCSLDFFTT Trigger: CGTGGTGAAGAAATCCAAGCTGCACTGGTGCAGCAACGTCCCTGACATCTTCATCATCAACCTCTCTGTGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS CAA 90 bp | AGCAGATCCACCACAGAGAGGTTGATGATGAAGATGTCAGGGACGTaGCTGCACCAGTGCAGCTTGGATTTCTTCACCACGGCAAAAATG | + |
|
Preference number: 6 (lower is better) Translates to: SRSTTERLMMKMSGT*LHQCSLDFFTTAKM Trigger: CATTTTTGCCGTGGTGAAGAAATCCAAGCTGCACTGGTGCAGCAACGTCCCTGACATCTTCATCATCAACCTCTCTGTGGTGGATCTGCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS CAA 72 bp | ATGAAGATGTCAGGGACGTTGCTGCACCAGTGCAGCTaGGATTTCTTCACCACGGCAAAAATGACTGTGGAG | + |
|
Preference number: 6 (lower is better) Translates to: MKMSGTLLHQCS*DFFTTAKMTVE Trigger: CTCCACAGTCATTTTTGCCGTGGTGAAGAAATCCAAGCTGCACTGGTGCAGCAACGTCCCTGACATCTTCAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS CAA 90 bp | AGGTTGATGATGAAGATGTCAGGGACGTTGCTGCACCAGTGCAGCTaGGATTTCTTCACCACGGCAAAAATGACTGTGGAGTTTCCCACA | + |
|
Preference number: 6 (lower is better) Translates to: RLMMKMSGTLLHQCS*DFFTTAKMTVEFPT Trigger: TGTGGGAAACTCCACAGTCATTTTTGCCGTGGTGAAGAAATCCAAGCTGCACTGGTGCAGCAACGTCCCTGACATCTTCATCATCAACCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS TCA 72 bp | ACGGAAGGGCGAAGGCCAGGAAAAACTGATACAGAGTaGACCAGTAAAGATCAGTATCTGGGTTTGGTAGGC | + |
|
Preference number: 6 (lower is better) Translates to: TEGRRPGKTDTE*TSKDQYLGLVG Trigger: GCCTACCAAACCCAGATACTGATCTTTACTGGTTCACTCTGTATCAGTTTTTCCTGGCCTTCGCCCTTCCGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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| CDS GCA 72 bp | TTGATGATGAAGATGTCAGGGACGTTGCTGCACCAGTaGAGCTTGGATTTCTTCACCACGGCAAAAATGACT | + |
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Preference number: 6 (lower is better) Translates to: LMMKMSGTLLHQ*SLDFFTTAKMT Trigger: AGTCATTTTTGCCGTGGTGAAGAAATCCAAGCTGCACTGGTGCAGCAACGTCCCTGACATCTTCATCATCAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000166855.3 |
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