Pregenerated sensors for MCEE (Mus musculus)
Ensembl gene IDs: ENSMUSG00000033429Ensembl transcript IDs: ENSMUST00000037205.11, ENSMUST00000206194.2, ENSMUST00000206882.2
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TGCTTGGGTCAATTAATTAAGTTTCTCATAATTATAAATCATGCTTaGTCCAGTTCTACAAGGACCCCACCACAGTCTTTGGGATGGAGG | + |
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Preference number: 1 (lower is better) Translates to: CLGQLIKFLIIINHA*SSSTRTPPQSLGWR Trigger: CCTCCATCCCAAAGACTGTGGTGGGGTCCTTGTAGAACTGGAGCAAGCATGATTTATAATTATGAGAAACTTAATTAATTGACCCAAGCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000206882.2 |
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| 3UTR-3UTR GCA 90 bp | AATCATGCTTGCTCCAGTTCTACAAGGACCCCACCACAGTCTTTGGGATGGAGGCACAGGTTTCCCATGTaGTCCTATTTTGGCCTCATC | + |
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Preference number: 2 (lower is better) Translates to: NHACSSSTRTPPQSLGWRHRFPM*SYFGLI Trigger: GATGAGGCCAAAATAGGAGCACATGGGAAACCTGTG...CCTCCATCCCAAAGACTGTGGTGGGGTCCTTGTAGAACTGGAGCAAGCATGATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000206882.2 |
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| 3UTR-3UTR CAA 90 bp | AGTAGTGGAAGTAGTAGCACAATACATCTGATAATATTGATAAGGGTTGCTTGGATACATCTGATAATATaGATAAGGGTTGCTTGGGTC | + |
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Preference number: 3 (lower is better) Translates to: SSGSSSTIHLIILIRVAWIHLII*IRVAWV Trigger: GACCCAAGCAACCCTTATCAATATTATCAGATGTAT...CCAAGCAACCCTTATCAATATTATCAGATGTATTGTGCTACTACTTCCACTACT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000037205.11 ENSMUST00000206194.2 ENSMUST00000206882.2 |
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| CDS-3UTR TCA 90 bp | TATAAATCATGCTTGCTCCAGTTCTACAAGGACCCCACCACAGTCTTTGGGATGCCATCACAGCTGCACTaGTGTTGTCCACCTGTAGCG | + |
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Preference number: 4 (lower is better) Translates to: YKSCLLQFYKDPTTVFGMPSQLH*CCPPVA Trigger: CGCTACAGGTGGACAACATCAGTGCAGCTGTGATGG...CATCCCAAAGACTGTGGTGGGGTCCTTGTAGAACTGGAGCAAGCATGATTTATA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000206882.2 |
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| CDS-3UTR TCA 90 bp | AGTAGTGGAAGTAGTAGCACAATACATCTGATAATATTGATAAGGGTTGCTTGGCCATCACAGCTGCACTaGTGTTGTCCACCTGGGCCC | + |
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Preference number: 4 (lower is better) Translates to: SSGSSSTIHLIILIRVAWPSQLH*CCPPGP Trigger: GGGCCCAGGTGGACAACATCAGTGCAGCTGTGATGG...CCAAGCAACCCTTATCAATATTATCAGATGTATTGTGCTACTACTTCCACTACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000206194.2 |
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| CDS-3UTR TCA 90 bp | AGTAGTGGAAGTAGTAGCACAATACATCTGATAATATTGATAAGGGTTGCTTGGACCTCGATGCAGACGTaGTGCATTCCTCCAGCCTTG | + |
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Preference number: 4 (lower is better) Translates to: SSGSSSTIHLIILIRVAWTSMQT*CIPPAL Trigger: CAAGGCTGGAGGAATGCATCACGTCTGCATCGAGGT...CCAAGCAACCCTTATCAATATTATCAGATGTATTGTGCTACTACTTCCACTACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037205.11 |
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| CDS-3UTR TCA 90 bp | AGTAGTGGAAGTAGTAGCACAATACATCTGATAATATTGATAAGGGTTGCTTGGCCATCACAGCTGCACTaGTGTTGTCCACCTCGATGC | + |
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Preference number: 4 (lower is better) Translates to: SSGSSSTIHLIILIRVAWPSQLH*CCPPRC Trigger: GCATCGAGGTGGACAACATCAGTGCAGCTGTGATGG...CCAAGCAACCCTTATCAATATTATCAGATGTATTGTGCTACTACTTCCACTACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037205.11 |
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| CDS-3UTR CCA 90 bp | AGTAGTGGAAGTAGTAGCACAATACATCTGATAATATTGATAAGGGTTGCTTGGCTGATGTTGTCCACCTaGGCCCCTAGAACATCCCTG | + |
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Preference number: 4 (lower is better) Translates to: SSGSSSTIHLIILIRVAWLMLST*APRTSL Trigger: CAGGGATGTTCTAGGGGCCCAGGTGGACAACATCAG...CCAAGCAACCCTTATCAATATTATCAGATGTATTGTGCTACTACTTCCACTACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000206194.2 |
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| CDS-3UTR CCA 90 bp | AGTAGTGGAAGTAGTAGCACAATACATCTGATAATATTGATAAGGGTTGCTTGGGGCCTTTTCCAAATCTaGCACTGCTACAGCCACGTG | + |
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Preference number: 4 (lower is better) Translates to: SSGSSSTIHLIILIRVAWGLFQI*HCYSHV Trigger: CACGTGGCTGTAGCAGTGCCAGATTTGGAAAAGGCC...CCAAGCAACCCTTATCAATATTATCAGATGTATTGTGCTACTACTTCCACTACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000037205.11 ENSMUST00000206194.2 |
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| CDS-3UTR TCA 90 bp | AGTAGTGGAAGTAGTAGCACAATACATCTGATAATATTGATAAGGGTTGCTTGGACAGGACTGGATTCTTaGAACTGGGACTGTGGTGTG | + |
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Preference number: 4 (lower is better) Translates to: SSGSSSTIHLIILIRVAWTGLDS*NWDCGV Trigger: CACACCACAGTCCCAGTTTCAAGAATCCAGTCCTGT...CCAAGCAACCCTTATCAATATTATCAGATGTATTGTGCTACTACTTCCACTACT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000037205.11 ENSMUST00000206194.2 |
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| CDS-3UTR TCA 90 bp | AGTAGTGGAAGTAGTAGCACAATACATCTGATAATATTGATAAGGGTTGCTTGGTCACTCCCCAGTGGATaGAGCAGTTCCATCTTGGTA | + |
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Preference number: 4 (lower is better) Translates to: SSGSSSTIHLIILIRVAWSLPSG*SSSILV Trigger: TACCAAGATGGAACTGCTTCATCCACTGGGGAGTGA...CCAAGCAACCCTTATCAATATTATCAGATGTATTGTGCTACTACTTCCACTACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037205.11 |
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| CDS-3UTR GCA 90 bp | AGTAGTGGAAGTAGTAGCACAATACATCTGATAATATTGATAAGGGTTGCTTGGTGTTGTCCACCTCGATaGAGACGTGATGCATTCCTC | + |
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Preference number: 4 (lower is better) Translates to: SSGSSSTIHLIILIRVAWCCPPR*RRDAFL Trigger: GAGGAATGCATCACGTCTGCATCGAGGTGGACAACA...CCAAGCAACCCTTATCAATATTATCAGATGTATTGTGCTACTACTTCCACTACT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037205.11 |
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| CDS-3UTR GCA 90 bp | AGTAGTGGAAGTAGTAGCACAATACATCTGATAATATTGATAAGGGTTGCTTGGCAGATCCATCACAGCTaGACTGATGTTGTCCACCTC | + |
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Preference number: 4 (lower is better) Translates to: SSGSSSTIHLIILIRVAWQIHHS*TDVVHL Trigger: GAGGTGGACAACATCAGTGCAGCTGTGATGGATCTG...CCAAGCAACCCTTATCAATATTATCAGATGTATTGTGCTACTACTTCCACTACT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037205.11 |
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| CDS-3UTR GCA 90 bp | AGTAGTGGAAGTAGTAGCACAATACATCTGATAATATTGATAAGGGTTGCTTGGCAGATCCATCACAGCTaGACTGATGTTGTCCACCTG | + |
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Preference number: 4 (lower is better) Translates to: SSGSSSTIHLIILIRVAWQIHHS*TDVVHL Trigger: CAGGTGGACAACATCAGTGCAGCTGTGATGGATCTG...CCAAGCAACCCTTATCAATATTATCAGATGTATTGTGCTACTACTTCCACTACT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000206194.2 ENSMUST00000206882.2 |
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| CDS-3UTR CCA 90 bp | AGTAGTGGAAGTAGTAGCACAATACATCTGATAATATTGATAAGGGTTGCTTGGCAGAAAGCCTGTGATTaGACTATCACTCCCCAGTGG | + |
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Preference number: 4 (lower is better) Translates to: SSGSSSTIHLIILIRVAWQKACD*TITPQW Trigger: CCACTGGGGAGTGATAGTCCAATCACAGGCTTTCTG...CCAAGCAACCCTTATCAATATTATCAGATGTATTGTGCTACTACTTCCACTACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037205.11 |
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| CDS-3UTR CCA 90 bp | AGTAGTGGAAGTAGTAGCACAATACATCTGATAATATTGATAAGGGTTGCTTGGCCCCACCACAGTCTTTaGGATGGAGGAAAATCACAG | + |
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Preference number: 4 (lower is better) Translates to: SSGSSSTIHLIILIRVAWPHHSL*DGGKSQ Trigger: CTGTGATTTTCCTCCATCCCAAAGACTGTGGTGGGG...CCAAGCAACCCTTATCAATATTATCAGATGTATTGTGCTACTACTTCCACTACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000037205.11 ENSMUST00000206194.2 |
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| CDS-3UTR GCA 90 bp | AGTAGTGGAAGTAGTAGCACAATACATCTGATAATATTGATAAGGGTTGCTTGGCACAGGTTTCCCATGTaGTCCTATTTTGGCCTCATC | + |
|
Preference number: 4 (lower is better) Translates to: SSGSSSTIHLIILIRVAWHRFPM*SYFGLI Trigger: GATGAGGCCAAAATAGGAGCACATGGGAAACCTGTG...CCAAGCAACCCTTATCAATATTATCAGATGTATTGTGCTACTACTTCCACTACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037205.11 ENSMUST00000206194.2 |
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| CDS-3UTR CCA 90 bp | AGTAGTGGAAGTAGTAGCACAATACATCTGATAATATTGATAAGGGTTGCTTGGGCTTCCACACAGGACTaGATTCTTGAAACTGGGACT | + |
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Preference number: 4 (lower is better) Translates to: SSGSSSTIHLIILIRVAWASTQD*ILETGT Trigger: AGTCCCAGTTTCAAGAATCCAGTCCTGTGTGGAAGC...CCAAGCAACCCTTATCAATATTATCAGATGTATTGTGCTACTACTTCCACTACT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000037205.11 ENSMUST00000206194.2 |
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| CDS-3UTR CCA 90 bp | AGTAGTGGAAGTAGTAGCACAATACATCTGATAATATTGATAAGGGTTGCTTGGTTGAAACTGGGACTGTaGTGTGGAAAAACTTCTCCC | + |
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Preference number: 4 (lower is better) Translates to: SSGSSSTIHLIILIRVAWLKLGL*CGKTSP Trigger: GGGAGAAGTTTTTCCACACCACAGTCCCAGTTTCAA...CCAAGCAACCCTTATCAATATTATCAGATGTATTGTGCTACTACTTCCACTACT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000037205.11 ENSMUST00000206194.2 |
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| CDS-3UTR CCA 90 bp | AGTAGTGGAAGTAGTAGCACAATACATCTGATAATATTGATAAGGGTTGCTTGGCATGTGCTCCTATTTTaGCCTCATCACTCAGACTAC | + |
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Preference number: 4 (lower is better) Translates to: SSGSSSTIHLIILIRVAWHVLLF*PHHSDY Trigger: GTAGTCTGAGTGATGAGGCCAAAATAGGAGCACATG...CCAAGCAACCCTTATCAATATTATCAGATGTATTGTGCTACTACTTCCACTACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037205.11 ENSMUST00000206194.2 |
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| CDS-3UTR CCA 90 bp | AGTAGTGGAAGTAGTAGCACAATACATCTGATAATATTGATAAGGGTTGCTTGGCCACAGTCTTTGGGATaGAGGAAAATCACAGGTTTC | + |
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Preference number: 4 (lower is better) Translates to: SSGSSSTIHLIILIRVAWPQSLG*RKITGF Trigger: GAAACCTGTGATTTTCCTCCATCCCAAAGACTGTGG...CCAAGCAACCCTTATCAATATTATCAGATGTATTGTGCTACTACTTCCACTACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037205.11 ENSMUST00000206194.2 |
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| CDS-3UTR TCA 90 bp | AGTAGTGGAAGTAGTAGCACAATACATCTGATAATATTGATAAGGGTTGCTTGGAACATCCCTGTAAAATaGCGAGGCCTTTTCCAAATC | + |
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Preference number: 4 (lower is better) Translates to: SSGSSSTIHLIILIRVAWNIPVK*RGLFQI Trigger: GATTTGGAAAAGGCCTCGTCATTTTACAGGGATGTT...CCAAGCAACCCTTATCAATATTATCAGATGTATTGTGCTACTACTTCCACTACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000037205.11 ENSMUST00000206194.2 |
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| CDS-3UTR CCA 90 bp | AGTAGTGGAAGTAGTAGCACAATACATCTGATAATATTGATAAGGGTTGCTTGGATTGCAACTGAAGTTTaGACTCTGGAGAAAAGCCCT | + |
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Preference number: 4 (lower is better) Translates to: SSGSSSTIHLIILIRVAWIATEV*TLEKSP Trigger: AGGGCTTTTCTCCAGAGTCCAAACTTCAGTTGCAAT...CCAAGCAACCCTTATCAATATTATCAGATGTATTGTGCTACTACTTCCACTACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037205.11 ENSMUST00000206194.2 |
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| CDS CCA 90 bp | TGGGACTGTGGTGTGGAAAAACTTCTCCCTATTGCAACTGAAGTTTaGACTCTGGAGAAAAGCCCTGTAGCGCCCGCAGCCAACGCGGCG | + |
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Preference number: 5 (lower is better) Translates to: WDCGVEKLLPIATEV*TLEKSPVAPAANAA Trigger: CGCCGCGTTGGCTGCGGGCGCTACAGGGCTTTTCTCCAGAGTCCAAACTTCAGTTGCAATAGGGAGAAGTTTTTCCACACCACAGTCCCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000037205.11 ENSMUST00000206194.2 |
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| CDS-3UTR CAA 90 bp | CTCCAGTTCTACAAGGACCCCACCACAGTCTTTGGGATGGAGGAAAATCACAGGACAGCTGCACTGATGTaGTCCACCTGTAGCGCCCGC | + |
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Preference number: 5 (lower is better) Translates to: LQFYKDPTTVFGMEENHRTAALM*STCSAR Trigger: GCGGGCGCTACAGGTGGACAACATCAGTGCAGCTGT...CCTGTGATTTTCCTCCATCCCAAAGACTGTGGTGGGGTCCTTGTAGAACTGGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000206882.2 |
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| CDS TCA 90 bp | CACTCCCCAGTGGATGAAGCAGTTCCATCTTGGTATTTCCCAGGTTaGCAAAAACCACAGATACTCCATGTTCCGGCAGAGGGACCACCT | + |
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Preference number: 5 (lower is better) Translates to: HSPVDEAVPSWYFPG*QKPQILHVPAEGPP Trigger: AGGTGGTCCCTCTGCCGGAACATGGAGTATCTGTGGTTTTTGTCAACCTGGGAAATACCAAGATGGAACTGCTTCATCCACTGGGGAGTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000037205.11 |
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| CDS TCA 90 bp | AGACGTGATGCATTCCTCCAGCCTTGTTCTTCTGCAGAAAGCCTGTaGTTGGACTATCACTCCCCAGTGGATGAAGCAGTTCCATCTTGG | + |
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Preference number: 5 (lower is better) Translates to: RRDAFLQPCSSAESL*LDYHSPVDEAVPSW Trigger: CCAAGATGGAACTGCTTCATCCACTGGGGAGTGATAGTCCAATCACAGGCTTTCTGCAGAAGAACAAGGCTGGAGGAATGCATCACGTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037205.11 |
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| CDS TCA 90 bp | TCAGACTACGGATCTTCTTCTTCTTCAGATCCATCACAGCTGCACTaGTGTTGTCCACCTGGGCCCCTAGAACATCCCTGTAAAATGACG | + |
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Preference number: 5 (lower is better) Translates to: SDYGSSSSSDPSQLH*CCPPGPLEHPCKMT Trigger: CGTCATTTTACAGGGATGTTCTAGGGGCCCAGGTGGACAACATCAGTGCAGCTGTGATGGATCTGAAGAAGAAGAAGATCCGTAGTCTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000206194.2 |
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| CDS GCA 90 bp | CCCACCACAGTCTTTGGGATGGAGGAAAATCACAGGTTTCCCATGTaGTCCTATTTTGGCCTCATCACTCAGACTACGGATCTTCTTCTT | + |
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Preference number: 5 (lower is better) Translates to: PTTVFGMEENHRFPM*SYFGLITQTTDLLL Trigger: AAGAAGAAGATCCGTAGTCTGAGTGATGAGGCCAAAATAGGAGCACATGGGAAACCTGTGATTTTCCTCCATCCCAAAGACTGTGGTGGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000037205.11 ENSMUST00000206194.2 |
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| CDS CCA 90 bp | CCAGCTTCCACACAGGACTGGATTCTTGAAACTGGGACTGTGGTGTaGAAAAACTTCTCCCTATTGCAACTGAAGTTTGGACTCTGGAGA | + |
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Preference number: 5 (lower is better) Translates to: PASTQDWILETGTVV*KNFSLLQLKFGLWR Trigger: TCTCCAGAGTCCAAACTTCAGTTGCAATAGGGAGAAGTTTTTCCACACCACAGTCCCAGTTTCAAGAATCCAGTCCTGTGTGGAAGCTGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000037205.11 ENSMUST00000206194.2 |
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| CDS TCA 90 bp | TTCTTCTGCAGAAAGCCTGTGATTGGACTATCACTCCCCAGTGGATaGAGCAGTTCCATCTTGGTATTTCCCAGGTTGACAAAAACCACA | + |
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Preference number: 5 (lower is better) Translates to: FFCRKPVIGLSLPSG*SSSILVFPRLTKTT Trigger: TGTGGTTTTTGTCAACCTGGGAAATACCAAGATGGAACTGCTTCATCCACTGGGGAGTGATAGTCCAATCACAGGCTTTCTGCAGAAGAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000037205.11 |
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| CDS CCA 90 bp | CTTGTTCTTCTGCAGAAAGCCTGTGATTGGACTATCACTCCCCAGTaGATGAAGCAGTTCCATCTTGGTATTTCCCAGGTTGACAAAAAC | + |
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Preference number: 5 (lower is better) Translates to: LVLLQKACDWTITPQ*MKQFHLGISQVDKN Trigger: GTTTTTGTCAACCTGGGAAATACCAAGATGGAACTGCTTCATCCACTGGGGAGTGATAGTCCAATCACAGGCTTTCTGCAGAAGAACAAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000037205.11 |
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| CDS-3UTR CAA 90 bp | AGTAGTGGAAGTAGTAGCACAATACATCTGATAATATTGATAAGGGTTGCTTGGACAGCTGCACTGATGTaGTCCACCTGGGCCCCTAGA | + |
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Preference number: 5 (lower is better) Translates to: SSGSSSTIHLIILIRVAWTAALM*STWAPR Trigger: TCTAGGGGCCCAGGTGGACAACATCAGTGCAGCTGT...CCAAGCAACCCTTATCAATATTATCAGATGTATTGTGCTACTACTTCCACTACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000206194.2 |
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| CDS-3UTR CAA 90 bp | AGTAGTGGAAGTAGTAGCACAATACATCTGATAATATTGATAAGGGTTGCTTGGACAGCTGCACTGATGTaGTCCACCTCGATGCAGACG | + |
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Preference number: 5 (lower is better) Translates to: SSGSSSTIHLIILIRVAWTAALM*STSMQT Trigger: CGTCTGCATCGAGGTGGACAACATCAGTGCAGCTGT...CCAAGCAACCCTTATCAATATTATCAGATGTATTGTGCTACTACTTCCACTACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037205.11 |
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| CDS-3UTR CAA 90 bp | AGTAGTGGAAGTAGTAGCACAATACATCTGATAATATTGATAAGGGTTGCTTGGTGCATTCCTCCAGCCTaGTTCTTCTGCAGAAAGCCT | + |
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Preference number: 5 (lower is better) Translates to: SSGSSSTIHLIILIRVAWCIPPA*FFCRKP Trigger: AGGCTTTCTGCAGAAGAACAAGGCTGGAGGAATGCA...CCAAGCAACCCTTATCAATATTATCAGATGTATTGTGCTACTACTTCCACTACT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037205.11 |
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| CDS-3UTR CAA 90 bp | AGTAGTGGAAGTAGTAGCACAATACATCTGATAATATTGATAAGGGTTGCTTGGACCCCACCACAGTCTTaGGGATGGAGGAAAATCACA | + |
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Preference number: 5 (lower is better) Translates to: SSGSSSTIHLIILIRVAWTPPQS*GWRKIT Trigger: TGTGATTTTCCTCCATCCCAAAGACTGTGGTGGGGT...CCAAGCAACCCTTATCAATATTATCAGATGTATTGTGCTACTACTTCCACTACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000037205.11 ENSMUST00000206194.2 |
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| CDS-3UTR CAA 90 bp | AGTAGTGGAAGTAGTAGCACAATACATCTGATAATATTGATAAGGGTTGCTTGGCCATGTGCTCCTATTTaGGCCTCATCACTCAGACTA | + |
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Preference number: 5 (lower is better) Translates to: SSGSSSTIHLIILIRVAWPCAPI*ASSLRL Trigger: TAGTCTGAGTGATGAGGCCAAAATAGGAGCACATGG...CCAAGCAACCCTTATCAATATTATCAGATGTATTGTGCTACTACTTCCACTACT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000037205.11 ENSMUST00000206194.2 |
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| CDS-3UTR CAA 90 bp | AGTAGTGGAAGTAGTAGCACAATACATCTGATAATATTGATAAGGGTTGCTTGGAAAAACTTCTCCCTATaGCAACTGAAGTTTGGACTC | + |
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Preference number: 5 (lower is better) Translates to: SSGSSSTIHLIILIRVAWKNFSL*QLKFGL Trigger: GAGTCCAAACTTCAGTTGCAATAGGGAGAAGTTTTT...CCAAGCAACCCTTATCAATATTATCAGATGTATTGTGCTACTACTTCCACTACT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000037205.11 ENSMUST00000206194.2 |
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| CDS-3UTR CAA 90 bp | AGTAGTGGAAGTAGTAGCACAATACATCTGATAATATTGATAAGGGTTGCTTGGTTGGTATTTCCCAGGTaGACAAAAACCACAGATACT | + |
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Preference number: 5 (lower is better) Translates to: SSGSSSTIHLIILIRVAWLVFPR*TKTTDT Trigger: AGTATCTGTGGTTTTTGTCAACCTGGGAAATACCAA...CCAAGCAACCCTTATCAATATTATCAGATGTATTGTGCTACTACTTCCACTACT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000037205.11 |
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| CDS TCA 72 bp | GGATCTTCTTCTTCTTCAGATCCATCACAGCTGCACTaGTGTTGTCCACCTGTAGCGCCCGCAGCCAACGCG | + |
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Preference number: 6 (lower is better) Translates to: GSSSSSDPSQLH*CCPPVAPAANA Trigger: CGCGTTGGCTGCGGGCGCTACAGGTGGACAACATCAGTGCAGCTGTGATGGATCTGAAGAAGAAGAAGATCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000206882.2 |
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| CDS CCA 72 bp | GGTGTGGAAAAACTTCTCCCTATTGCAACTGAAGTTTaGACTCTGGAGAAAAGCCCTGTAGCGCCCGCAGCC | + |
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Preference number: 6 (lower is better) Translates to: GVEKLLPIATEV*TLEKSPVAPAA Trigger: GGCTGCGGGCGCTACAGGGCTTTTCTCCAGAGTCCAAACTTCAGTTGCAATAGGGAGAAGTTTTTCCACACC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000037205.11 ENSMUST00000206194.2 |
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| CDS CAA 90 bp | AGCCACGTGATTGAGCCGACCCAGCTTCCACACAGGACTGGATTCTaGAAACTGGGACTGTGGTGTGGAAAAACTTCTCCCTATTGCAAC | + |
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Preference number: 6 (lower is better) Translates to: SHVIEPTQLPHRTGF*KLGLWCGKTSPYCN Trigger: GTTGCAATAGGGAGAAGTTTTTCCACACCACAGTCCCAGTTTCAAGAATCCAGTCCTGTGTGGAAGCTGGGTCGGCTCAATCACGTGGCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000037205.11 ENSMUST00000206194.2 |
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| CDS TCA 72 bp | TTGAGCCGACCCAGCTTCCACACAGGACTGGATTCTTaGAACTGGGACTGTGGTGTGGAAAAACTTCTCCCT | + |
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Preference number: 6 (lower is better) Translates to: LSRPSFHTGLDS*NWDCGVEKLLP Trigger: AGGGAGAAGTTTTTCCACACCACAGTCCCAGTTTCAAGAATCCAGTCCTGTGTGGAAGCTGGGTCGGCTCAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000037205.11 ENSMUST00000206194.2 |
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| CDS TCA 72 bp | GGATCTTCTTCTTCTTCAGATCCATCACAGCTGCACTaGTGTTGTCCACCTGGGCCCCTAGAACATCCCTGT | + |
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Preference number: 6 (lower is better) Translates to: GSSSSSDPSQLH*CCPPGPLEHPC Trigger: ACAGGGATGTTCTAGGGGCCCAGGTGGACAACATCAGTGCAGCTGTGATGGATCTGAAGAAGAAGAAGATCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000206194.2 |
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| CDS CAA 72 bp | ATTGAGCCGACCCAGCTTCCACACAGGACTGGATTCTaGAAACTGGGACTGTGGTGTGGAAAAACTTCTCCC | + |
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Preference number: 6 (lower is better) Translates to: IEPTQLPHRTGF*KLGLWCGKTSP Trigger: GGGAGAAGTTTTTCCACACCACAGTCCCAGTTTCAAGAATCCAGTCCTGTGTGGAAGCTGGGTCGGCTCAAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000037205.11 ENSMUST00000206194.2 |
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| CDS TCA 72 bp | GGATCTTCTTCTTCTTCAGATCCATCACAGCTGCACTaGTGTTGTCCACCTCGATGCAGACGTGATGCATTC | + |
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Preference number: 6 (lower is better) Translates to: GSSSSSDPSQLH*CCPPRCRRDAF Trigger: GAATGCATCACGTCTGCATCGAGGTGGACAACATCAGTGCAGCTGTGATGGATCTGAAGAAGAAGAAGATCC 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037205.11 |
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| CDS GCA 72 bp | ACTACGGATCTTCTTCTTCTTCAGATCCATCACAGCTaGACTGATGTTGTCCACCTCGATGCAGACGTGATG | + |
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Preference number: 6 (lower is better) Translates to: TTDLLLLQIHHS*TDVVHLDADVM Trigger: CATCACGTCTGCATCGAGGTGGACAACATCAGTGCAGCTGTGATGGATCTGAAGAAGAAGAAGATCCGTAGT 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037205.11 |
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| CDS TCA 72 bp | GTGGATGAAGCAGTTCCATCTTGGTATTTCCCAGGTTaGCAAAAACCACAGATACTCCATGTTCCGGCAGAG | + |
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Preference number: 6 (lower is better) Translates to: VDEAVPSWYFPG*QKPQILHVPAE Trigger: CTCTGCCGGAACATGGAGTATCTGTGGTTTTTGTCAACCTGGGAAATACCAAGATGGAACTGCTTCATCCAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000037205.11 |
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| CDS GCA 72 bp | GTCTTTGGGATGGAGGAAAATCACAGGTTTCCCATGTaGTCCTATTTTGGCCTCATCACTCAGACTACGGAT | + |
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Preference number: 6 (lower is better) Translates to: VFGMEENHRFPM*SYFGLITQTTD Trigger: ATCCGTAGTCTGAGTGATGAGGCCAAAATAGGAGCACATGGGAAACCTGTGATTTTCCTCCATCCCAAAGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000037205.11 ENSMUST00000206194.2 |
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| CDS CAA 72 bp | GAAACTGGGACTGTGGTGTGGAAAAACTTCTCCCTATaGCAACTGAAGTTTGGACTCTGGAGAAAAGCCCTG | + |
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Preference number: 6 (lower is better) Translates to: ETGTVVWKNFSL*QLKFGLWRKAL Trigger: CAGGGCTTTTCTCCAGAGTCCAAACTTCAGTTGCAATAGGGAGAAGTTTTTCCACACCACAGTCCCAGTTTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000037205.11 ENSMUST00000206194.2 |
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| CDS CCA 72 bp | GGAGGAAAATCACAGGTTTCCCATGTGCTCCTATTTTaGCCTCATCACTCAGACTACGGATCTTCTTCTTCT | + |
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Preference number: 6 (lower is better) Translates to: GGKSQVSHVLLF*PHHSDYGSSSS Trigger: AGAAGAAGAAGATCCGTAGTCTGAGTGATGAGGCCAAAATAGGAGCACATGGGAAACCTGTGATTTTCCTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000037205.11 ENSMUST00000206194.2 |
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