Pregenerated sensors for MCCC2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021646Ensembl transcript IDs: ENSMUST00000022148.7, ENSMUST00000221344.2, ENSMUST00000222083.2
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TCTCCTCAAAGATCTCATCATAAGTTCAGGCTGCCCCCTCCACGGTaGAGTTCAGGCACAGATGCAGCAGCCCGACCTCAGTCCCCGGGG | + |
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Preference number: 1 (lower is better) Translates to: SPQRSHHKFRLPPPR*SSGTDAAARPQSPG Trigger: CCCCGGGGACTGAGGTCGGGCTGCTGCATCTGTGCCTGAACTGCACCGTGGAGGGGGCAGCCTGAACTTATGATGAGATCTTTGAGGAGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000221344.2 |
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| 3UTR-3UTR GCA 90 bp | GCCGCGCCCGGGCCTTCTCACTCCCTCCTAGTCTCACATACTGGGCTCGCTCATCTGCCCCCTCCACGGTaGAGTTCAGGCACAGATGCA | + |
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Preference number: 2 (lower is better) Translates to: AAPGPSHSLLVSHTGLAHLPPPR*SSGTDA Trigger: TGCATCTGTGCCTGAACTGCACCGTGGAGGGGGCAG...ATGAGCGAGCCCAGTATGTGAGACTAGGAGGGAGTGAGAAGGCCCGGGCGCGGC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000221344.2 |
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| 3UTR-3UTR TCA 90 bp | GACGGTGGCATCGTTAGCCACAATCATGCATTCTACCCCCGACACTCGCCCAATGAGACCCTGGGTCTATaGGATTGTCGATTCTGTCTC | + |
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Preference number: 2 (lower is better) Translates to: DGGIVSHNHAFYPRHSPNETLGL*DCRFCL Trigger: GAGACAGAATCGACAATCTCATAGACCCAGGGTCTC...ATTGGGCGAGTGTCGGGGGTAGAATGCATGATTGTGGCTAACGATGCCACCGTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000221344.2 |
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| 3UTR CCA 72 bp | CAGCAGCCCGACCTCAGTCCCCGGGGAAGCCGACAGTaGGACAGTTCACTCCTCAACGTGCCGATAGGTGGA | + |
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Preference number: 3 (lower is better) Translates to: QQPDLSPRGSRQ*DSSLLNVPIGG Trigger: TCCACCTATCGGCACGTTGAGGAGTGAACTGTCCCACTGTCGGCTTCCCCGGGGACTGAGGTCGGGCTGCTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000221344.2 |
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| 3UTR GCA 72 bp | AGATCTCATCATAAGTTCAGGCTGCCCCCTCCACGGTaGAGTTCAGGCACAGATGCAGCAGCCCGACCTCAG | + |
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Preference number: 3 (lower is better) Translates to: RSHHKFRLPPPR*SSGTDAAARPQ Trigger: CTGAGGTCGGGCTGCTGCATCTGTGCCTGAACTGCACCGTGGAGGGGGCAGCCTGAACTTATGATGAGATCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000221344.2 |
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| 3UTR CAA 72 bp | GAGAATTCCAGAAAGGGAGACCCTGGGTCTATGAGATaGTCGATTCTGTCTCTGGGGAGCAGTTTTCCTCTG | + |
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Preference number: 4 (lower is better) Translates to: ENSRKGDPGSMR*SILSLGSSFPL Trigger: CAGAGGAAAACTGCTCCCCAGAGACAGAATCGACAATCTCATAGACCCAGGGTCTCCCTTTCTGGAATTCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000221344.2 |
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| CDS GCA 90 bp | GCTCATAGTTCTCCTGGTAGGTGGAGGAGGCCGAGTCAGGCTGGGTaGCCAGTCGGGCCACTGAGTCCCCGTGATAGGCACGCTGCGGGG | + |
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Preference number: 5 (lower is better) Translates to: AHSSPGRWRRPSQAG*PVGPLSPRDRHAAG Trigger: CCCCGCAGCGTGCCTATCACGGGGACTCAGTGGCCCGACTGGGCACCCAGCCTGACTCGGCCTCCTCCACCTACCAGGAGAACTATGAGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022148.7 |
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| CDS GCA 90 bp | CCTGAAGATGCCAAAGTCAGTCCTCTGGATGGGCGCATTGAGGGCTaGACTGAGGCTGAGCCCCAGGACCAGCCTGGTGTCCACCGGGTC | + |
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Preference number: 5 (lower is better) Translates to: PEDAKVSPLDGRIEG*TEAEPQDQPGVHRV Trigger: GACCCGGTGGACACCAGGCTGGTCCTGGGGCTCAGCCTCAGTGCAGCCCTCAATGCGCCCATCCAGAGGACTGACTTTGGCATCTTCAGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022148.7 ENSMUST00000222083.2 |
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| CDS GCA 90 bp | CTGTGGCTAACACCGTGGCTGCCTGCTCTCCTCCCATCACAGAGATaGGGGCATTTGGCCACATGTAGAGAAACCTTGGACTGTATGCTC | + |
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Preference number: 5 (lower is better) Translates to: LWLTPWLPALLPSQR*GHLATCRETLDCML Trigger: GAGCATACAGTCCAAGGTTTCTCTACATGTGGCCAAATGCCCGCATCTCTGTGATGGGAGGAGAGCAGGCAGCCACGGTGTTAGCCACAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022148.7 ENSMUST00000222083.2 |
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| CDS CCA 90 bp | CACCGTGGCTGCCTGCTCTCCTCCCATCACAGAGATGCGGGCATTTaGCCACATGTAGAGAAACCTTGGACTGTATGCTCTGCCACACAT | + |
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Preference number: 5 (lower is better) Translates to: HRGCLLSSHHRDAGI*PHVEKPWTVCSATH Trigger: ATGTGTGGCAGAGCATACAGTCCAAGGTTTCTCTACATGTGGCCAAATGCCCGCATCTCTGTGATGGGAGGAGAGCAGGCAGCCACGGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022148.7 ENSMUST00000222083.2 |
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| CDS GCA 90 bp | AACCAGATAGATGCATGGGAGTCGGTTCTGCAGCGCAATCTCTTGTaGCCGCACGTGCTTTTTCACAGTCACTGGGTAGTAGGTGCCTCC | + |
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Preference number: 5 (lower is better) Translates to: NQIDAWESVLQRNLL*PHVLFHSHWVVGAS Trigger: GGAGGCACCTACTACCCAGTGACTGTGAAAAAGCACGTGCGGGCACAAGAGATTGCGCTGCAGAACCGACTCCCATGCATCTATCTGGTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022148.7 |
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| CDS CCA 90 bp | CTGCAGCGCAATCTCTTGTGCCCGCACGTGCTTTTTCACAGTCACTaGGTAGTAGGTGCCTCCTTTGACGGTGGCATCGTTAGCCACAAT | + |
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Preference number: 5 (lower is better) Translates to: LQRNLLCPHVLFHSH*VVGASFDGGIVSHN Trigger: ATTGTGGCTAACGATGCCACCGTCAAAGGAGGCACCTACTACCCAGTGACTGTGAAAAAGCACGTGCGGGCACAAGAGATTGCGCTGCAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022148.7 |
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| CDS TCA 90 bp | CCAAGGGTGGTCCAGCCAAGAAGATGGTACCCTGCTTCTGTACAATaGTGTTTTCATCAGCCATTGCAGGCACATACGCACCTCCTGCCG | + |
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Preference number: 5 (lower is better) Translates to: PRVVQPRRWYPASVQ*CFHQPLQAHTHLLP Trigger: CGGCAGGAGGTGCGTATGTGCCTGCAATGGCTGATGAAAACATCATTGTACAGAAGCAGGGTACCATCTTCTTGGCTGGACCACCCTTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022148.7 |
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| CDS GCA 90 bp | GAAGATGGTACCCTGCTTCTGTACAATGATGTTTTCATCAGCCATTaGAGGCACATACGCACCTCCTGCCGTACAGGAGCCCATGACCAC | + |
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Preference number: 5 (lower is better) Translates to: EDGTLLLYNDVFISH*RHIRTSCRTGAHDH Trigger: GTGGTCATGGGCTCCTGTACGGCAGGAGGTGCGTATGTGCCTGCAATGGCTGATGAAAACATCATTGTACAGAAGCAGGGTACCATCTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022148.7 |
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| CDS GCA 90 bp | TGCGGGCATTTGGCCACATGTAGAGAAACCTTGGACTGTATGCTCTaGCACACATTCCGTAGTTTCCAGCCCCGTACGATCCCCCAATTA | + |
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Preference number: 5 (lower is better) Translates to: CGHLATCRETLDCML*HTFRSFQPRTIPQL Trigger: TAATTGGGGGATCGTACGGGGCTGGAAACTACGGAATGTGTGGCAGAGCATACAGTCCAAGGTTTCTCTACATGTGGCCAAATGCCCGCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000022148.7 ENSMUST00000222083.2 |
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| CDS GCA 90 bp | CTCTTCGAACCTCTTAATGATGGGTTCTTTCAAAGCTGCCTCCTCTaGACTGGAGAACTGCTTCCCCTCGCGTGCTTTCTGGTCTCTAGC | + |
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Preference number: 5 (lower is better) Translates to: LFEPLNDGFFQSCLL*TGELLPLACFLVSS Trigger: GCTAGAGACCAGAAAGCACGCGAGGGGAAGCAGTTCTCCAGTGCAGAGGAGGCAGCTTTGAAAGAACCCATCATTAAGAGGTTCGAAGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022148.7 ENSMUST00000222083.2 |
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| CDS GCA 90 bp | GTTCCCTTCCTCTTCGAACCTCTTAATGATGGGTTCTTTCAAAGCTaGCTCCTCTGCACTGGAGAACTGCTTCCCCTCGCGTGCTTTCTG | + |
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Preference number: 5 (lower is better) Translates to: VPFLFEPLNDGFFQS*LLCTGELLPLACFL Trigger: CAGAAAGCACGCGAGGGGAAGCAGTTCTCCAGTGCAGAGGAGGCAGCTTTGAAAGAACCCATCATTAAGAGGTTCGAAGAGGAAGGGAAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022148.7 ENSMUST00000222083.2 |
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| CDS GCA 90 bp | CAGCCTGGTGTCCACCGGGTCAATAATCCCATCGTCCCACAGCCTTaGACTAGAGTAGTAAGGGTTCCCTTCCTCTTCGAACCTCTTAAT | + |
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Preference number: 5 (lower is better) Translates to: QPGVHRVNNPIVPQP*TRVVRVPFLFEPLN Trigger: ATTAAGAGGTTCGAAGAGGAAGGGAACCCTTACTACTCTAGTGCAAGGCTGTGGGACGATGGGATTATTGACCCGGTGGACACCAGGCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022148.7 ENSMUST00000222083.2 |
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| CDS GCA 90 bp | GTAGCTGCCTTCACCAAGGGTGGTCCAGCCAAGAAGATGGTACCCTaGTTCTGTACAATGATGTTTTCATCAGCCATTGCAGGCACATAC | + |
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Preference number: 5 (lower is better) Translates to: VAAFTKGGPAKKMVP*FCTMMFSSAIAGTY Trigger: GTATGTGCCTGCAATGGCTGATGAAAACATCATTGTACAGAAGCAGGGTACCATCTTCTTGGCTGGACCACCCTTGGTGAAGGCAGCTAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022148.7 |
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| CDS GCA 90 bp | TCCCCCAATTATGACAGTTATCTTAGGCACTTTGGCACAGGCTACTaGAGCTACCATTTTGGCACCATCCTTGGCAATCCCTTCAGCTTC | + |
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Preference number: 5 (lower is better) Translates to: SPNYDSYLRHFGTGY*SYHFGTILGNPFSF Trigger: GAAGCTGAAGGGATTGCCAAGGATGGTGCCAAAATGGTAGCTGCAGTAGCCTGTGCCAAAGTGCCTAAGATAACTGTCATAATTGGGGGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000022148.7 ENSMUST00000222083.2 |
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| CDS GCA 90 bp | TACAATGATGTTTTCATCAGCCATTGCAGGCACATACGCACCTCCTaGCGTACAGGAGCCCATGACCACAGCTATCTGTGTGATGTTTTT | + |
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Preference number: 5 (lower is better) Translates to: YNDVFISHCRHIRTS*RTGAHDHSYLCDVF Trigger: AAAAACATCACACAGATAGCTGTGGTCATGGGCTCCTGTACGGCAGGAGGTGCGTATGTGCCTGCAATGGCTGATGAAAACATCATTGTA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022148.7 |
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| CDS GCA 72 bp | TCTCCTGGTAGGTGGAGGAGGCCGAGTCAGGCTGGGTaGCCAGTCGGGCCACTGAGTCCCCGTGATAGGCAC | + |
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Preference number: 6 (lower is better) Translates to: SPGRWRRPSQAG*PVGPLSPRDRH Trigger: GTGCCTATCACGGGGACTCAGTGGCCCGACTGGGCACCCAGCCTGACTCGGCCTCCTCCACCTACCAGGAGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022148.7 |
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| CDS GCA 72 bp | GCCAAAGTCAGTCCTCTGGATGGGCGCATTGAGGGCTaGACTGAGGCTGAGCCCCAGGACCAGCCTGGTGTC | + |
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Preference number: 6 (lower is better) Translates to: AKVSPLDGRIEG*TEAEPQDQPGV Trigger: GACACCAGGCTGGTCCTGGGGCTCAGCCTCAGTGCAGCCCTCAATGCGCCCATCCAGAGGACTGACTTTGGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022148.7 ENSMUST00000222083.2 |
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| CDS TCA 72 bp | GGAGGGCGTGGTGGTCGTCCAAAGCATAGTGGTCAGTaGCCCCAGACTTTCTGCAATGCAGGTCGGCACCTC | + |
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Preference number: 6 (lower is better) Translates to: GGRGGRPKHSGQ*PQTFCNAGRHL Trigger: GAGGTGCCGACCTGCATTGCAGAAAGTCTGGGGTCACTGACCACTATGCTTTGGACGACCACCACGCCCTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022148.7 ENSMUST00000222083.2 |
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| CDS GCA 72 bp | CGGCCAAAGTGGTCCCGGTCTGGAAAGGTGTCTGCTTaGCGAGGTAAGTTGGCCCCTCCTGAGTCAACCAGA | + |
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Preference number: 6 (lower is better) Translates to: RPKWSRSGKVSA*RGKLAPPESTR Trigger: TCTGGTTGACTCAGGAGGGGCCAACTTACCTCGGCAAGCAGACACCTTTCCAGACCGGGACCACTTTGGCCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022148.7 |
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| CDS GCA 72 bp | TGGTCTCTAGCCACTGTGGCTAACACCGTGGCTGCCTaGTCTCCTCCCATCACAGAGATGCGGGCATTTGGC | + |
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Preference number: 6 (lower is better) Translates to: WSLATVANTVAA*SPPITEMRAFG Trigger: GCCAAATGCCCGCATCTCTGTGATGGGAGGAGAGCAGGCAGCCACGGTGTTAGCCACAGTGGCTAGAGACCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022148.7 ENSMUST00000222083.2 |
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| CDS GCA 72 bp | TCCGAGATCCTCAGCGGACACCTCTTCACCTGTAGCTaGCTTCACCAAGGGTGGTCCAGCCAAGAAGATGGT | + |
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Preference number: 6 (lower is better) Translates to: SEILSGHLFTCS*LHQGWSSQEDG Trigger: ACCATCTTCTTGGCTGGACCACCCTTGGTGAAGGCAGCTACAGGTGAAGAGGTGTCCGCTGAGGATCTCGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022148.7 |
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| CDS GCA 72 bp | ACACCGTGGCTGCCTGCTCTCCTCCCATCACAGAGATaGGGGCATTTGGCCACATGTAGAGAAACCTTGGAC | + |
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Preference number: 6 (lower is better) Translates to: TPWLPALLPSQR*GHLATCRETLD Trigger: GTCCAAGGTTTCTCTACATGTGGCCAAATGCCCGCATCTCTGTGATGGGAGGAGAGCAGGCAGCCACGGTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022148.7 ENSMUST00000222083.2 |
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| CDS CAA 90 bp | ACACCGTGGCTGCCTGCTCTCCTCCCATCACAGAGATGCGGGCATTaGGCCACATGTAGAGAAACCTTGGACTGTATGCTCTGCCACACA | + |
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Preference number: 6 (lower is better) Translates to: TPWLPALLPSQRCGH*ATCRETLDCMLCHT Trigger: TGTGTGGCAGAGCATACAGTCCAAGGTTTCTCTACATGTGGCCAAATGCCCGCATCTCTGTGATGGGAGGAGAGCAGGCAGCCACGGTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022148.7 ENSMUST00000222083.2 |
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| CDS CAA 90 bp | GTCAACCAGATAGATGCATGGGAGTCGGTTCTGCAGCGCAATCTCTaGTGCCCGCACGTGCTTTTTCACAGTCACTGGGTAGTAGGTGCC | + |
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Preference number: 6 (lower is better) Translates to: VNQIDAWESVLQRNL*CPHVLFHSHWVVGA Trigger: GGCACCTACTACCCAGTGACTGTGAAAAAGCACGTGCGGGCACAAGAGATTGCGCTGCAGAACCGACTCCCATGCATCTATCTGGTTGAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022148.7 |
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| CDS GCA 72 bp | GTTTTCATCAGCCATTGCAGGCACATACGCACCTCCTaGCGTACAGGAGCCCATGACCACAGCTATCTGTGT | + |
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Preference number: 6 (lower is better) Translates to: VFISHCRHIRTS*RTGAHDHSYLC Trigger: ACACAGATAGCTGTGGTCATGGGCTCCTGTACGGCAGGAGGTGCGTATGTGCCTGCAATGGCTGATGAAAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022148.7 |
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| CDS CAA 72 bp | CTGCCTGCTCTCCTCCCATCACAGAGATGCGGGCATTaGGCCACATGTAGAGAAACCTTGGACTGTATGCTC | + |
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Preference number: 6 (lower is better) Translates to: LPALLPSQRCGH*ATCRETLDCML Trigger: GAGCATACAGTCCAAGGTTTCTCTACATGTGGCCAAATGCCCGCATCTCTGTGATGGGAGGAGAGCAGGCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022148.7 ENSMUST00000222083.2 |
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| CDS GCA 72 bp | ACCCTGCTTCTGTACAATGATGTTTTCATCAGCCATTaGAGGCACATACGCACCTCCTGCCGTACAGGAGCC | + |
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Preference number: 6 (lower is better) Translates to: TLLLYNDVFISH*RHIRTSCRTGA Trigger: GGCTCCTGTACGGCAGGAGGTGCGTATGTGCCTGCAATGGCTGATGAAAACATCATTGTACAGAAGCAGGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022148.7 |
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| CDS GCA 72 bp | CCTCTTAATGATGGGTTCTTTCAAAGCTGCCTCCTCTaGACTGGAGAACTGCTTCCCCTCGCGTGCTTTCTG | + |
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Preference number: 6 (lower is better) Translates to: PLNDGFFQSCLL*TGELLPLACFL Trigger: CAGAAAGCACGCGAGGGGAAGCAGTTCTCCAGTGCAGAGGAGGCAGCTTTGAAAGAACCCATCATTAAGAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022148.7 ENSMUST00000222083.2 |
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| CDS GCA 72 bp | CTCTTCGAACCTCTTAATGATGGGTTCTTTCAAAGCTaGCTCCTCTGCACTGGAGAACTGCTTCCCCTCGCG | + |
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Preference number: 6 (lower is better) Translates to: LFEPLNDGFFQS*LLCTGELLPLA Trigger: CGCGAGGGGAAGCAGTTCTCCAGTGCAGAGGAGGCAGCTTTGAAAGAACCCATCATTAAGAGGTTCGAAGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022148.7 ENSMUST00000222083.2 |
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| CDS GCA 72 bp | GTCCACCGGGTCAATAATCCCATCGTCCCACAGCCTTaGACTAGAGTAGTAAGGGTTCCCTTCCTCTTCGAA | + |
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Preference number: 6 (lower is better) Translates to: VHRVNNPIVPQP*TRVVRVPFLFE Trigger: TTCGAAGAGGAAGGGAACCCTTACTACTCTAGTGCAAGGCTGTGGGACGATGGGATTATTGACCCGGTGGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022148.7 ENSMUST00000222083.2 |
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| CDS CCA 72 bp | AATCTCTTGTGCCCGCACGTGCTTTTTCACAGTCACTaGGTAGTAGGTGCCTCCTTTGACGGTGGCATCGTT | + |
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Preference number: 6 (lower is better) Translates to: NLLCPHVLFHSH*VVGASFDGGIV Trigger: AACGATGCCACCGTCAAAGGAGGCACCTACTACCCAGTGACTGTGAAAAAGCACGTGCGGGCACAAGAGATT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022148.7 |
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| CDS CAA 72 bp | ATAGATGCATGGGAGTCGGTTCTGCAGCGCAATCTCTaGTGCCCGCACGTGCTTTTTCACAGTCACTGGGTA | + |
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Preference number: 6 (lower is better) Translates to: IDAWESVLQRNL*CPHVLFHSHWV Trigger: TACCCAGTGACTGTGAAAAAGCACGTGCGGGCACAAGAGATTGCGCTGCAGAACCGACTCCCATGCATCTAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022148.7 |
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| CDS CCA 72 bp | CACAGGCTACTGCAGCTACCATTTTGGCACCATCCTTaGCAATCCCTTCAGCTTCATAGTCTCTGCCAACCA | + |
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Preference number: 6 (lower is better) Translates to: HRLLQLPFWHHP*QSLQLHSLCQP Trigger: TGGTTGGCAGAGACTATGAAGCTGAAGGGATTGCCAAGGATGGTGCCAAAATGGTAGCTGCAGTAGCCTGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022148.7 ENSMUST00000222083.2 |
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| CDS GCA 72 bp | TTCACCAAGGGTGGTCCAGCCAAGAAGATGGTACCCTaGTTCTGTACAATGATGTTTTCATCAGCCATTGCA | + |
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Preference number: 6 (lower is better) Translates to: FTKGGPAKKMVP*FCTMMFSSAIA Trigger: TGCAATGGCTGATGAAAACATCATTGTACAGAAGCAGGGTACCATCTTCTTGGCTGGACCACCCTTGGTGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022148.7 |
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| CDS CAA 72 bp | TACGATCCCCCAATTATGACAGTTATCTTAGGCACTTaGGCACAGGCTACTGCAGCTACCATTTTGGCACCA | + |
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Preference number: 6 (lower is better) Translates to: YDPPIMTVILGT*AQATAATILAP Trigger: TGGTGCCAAAATGGTAGCTGCAGTAGCCTGTGCCAAAGTGCCTAAGATAACTGTCATAATTGGGGGATCGTA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000022148.7 ENSMUST00000222083.2 |
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| CDS CAA 72 bp | GCAAATCCTGTAACTAGGGTGTCTCCATATAAGGCCTaGAACTCATTGAATCTGCTTCCATCCACGATTCTA | + |
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Preference number: 6 (lower is better) Translates to: ANPVTRVSPYKA*NSLNLLPSTIL Trigger: TAGAATCGTGGATGGAAGCAGATTCAATGAGTTCAAGGCCTTATATGGAGACACCCTAGTTACAGGATTTGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022148.7 ENSMUST00000222083.2 |
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| CDS CAA 90 bp | AATATTCGAGCAAATCCTGTAACTAGGGTGTCTCCATATAAGGCCTaGAACTCATTGAATCTGCTTCCATCCACGATTCTAGCAATGACC | + |
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Preference number: 6 (lower is better) Translates to: NIRANPVTRVSPYKA*NSLNLLPSTILAMT Trigger: GGTCATTGCTAGAATCGTGGATGGAAGCAGATTCAATGAGTTCAAGGCCTTATATGGAGACACCCTAGTTACAGGATTTGCTCGAATATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022148.7 |
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| CDS CAA 90 bp | GCAAATCCTGTAACTAGGGTGTCTCCATATAAGGCCTTGAACTCATaGAATCTGCTTCCATCCACGATTCTAGCAATGACATCCATTTTC | + |
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Preference number: 6 (lower is better) Translates to: ANPVTRVSPYKALNS*NLLPSTILAMTSIF Trigger: GAAAATGGATGTCATTGCTAGAATCGTGGATGGAAGCAGATTCAATGAGTTCAAGGCCTTATATGGAGACACCCTAGTTACAGGATTTGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000222083.2 |
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| CDS CAA 90 bp | AATATTCGAGCAAATCCTGTAACTAGGGTGTCTCCATATAAGGCCTaGAACTCATTGAATCTGCTTCCATCCACGATTCTAGCAATGACA | + |
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Preference number: 6 (lower is better) Translates to: NIRANPVTRVSPYKA*NSLNLLPSTILAMT Trigger: TGTCATTGCTAGAATCGTGGATGGAAGCAGATTCAATGAGTTCAAGGCCTTATATGGAGACACCCTAGTTACAGGATTTGCTCGAATATT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000222083.2 |
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