Pregenerated sensors for MC5R (Mus musculus)
Ensembl gene IDs: ENSMUSG00000007480Ensembl transcript IDs: ENSMUST00000172148.4, ENSMUST00000239469.2
Found 70 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTGGGGAGGAGGGAAAGGCACACAGCCAGTGTCAGGGTTGGTGCTTaGGCTTTCGTCCCTTTCCTCTACTCCAGACTGGAGAAAATGGCT | + |
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Preference number: 1 (lower is better) Translates to: LGRRERHTASVRVGA*AFVPFLYSRLEKMA Trigger: AGCCATTTTCTCCAGTCTGGAGTAGAGGAAAGGGACGAAAGCTCAAGCACCAACCCTGACACTGGCTGTGTGCCTTTCCCTCCTCCCCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| 3UTR TCA 90 bp | AACCCTATGATCTTCGCTGGGATCCAGAGGGCCACGTGGCTCTGTTaGGCACAGCAAGTCTCTTGGCATCCAAAACACTGCTCTGGCCAC | + |
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Preference number: 1 (lower is better) Translates to: NPMIFAGIQRATWLC*AQQVSWHPKHCSGH Trigger: GTGGCCAGAGCAGTGTTTTGGATGCCAAGAGACTTGCTGTGCTCAACAGAGCCACGTGGCCCTCTGGATCCCAGCGAAGATCATAGGGTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| 3UTR CCA 90 bp | TCAGGGTTGGTGCTTGAGCTTTCGTCCCTTTCCTCTACTCCAGACTaGAGAAAATGGCTTGTCTTTGCTGTGGACCGGGCCTTTGATGGT | + |
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Preference number: 1 (lower is better) Translates to: SGLVLELSSLSSTPD*RKWLVFAVDRAFDG Trigger: ACCATCAAAGGCCCGGTCCACAGCAAAGACAAGCCATTTTCTCCAGTCTGGAGTAGAGGAAAGGGACGAAAGCTCAAGCACCAACCCTGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| 3UTR GCA 90 bp | CACAAATTGTCACAGACCATTTCCACCACGGAGACAATTCACATGTaGATACCTCGGACACACAATAACCAAACGGAGCTGCAAAGGGGG | + |
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Preference number: 1 (lower is better) Translates to: HKLSQTISTTETIHM*IPRTHNNQTELQRG Trigger: CCCCCTTTGCAGCTCCGTTTGGTTATTGTGTGTCCGAGGTATGCACATGTGAATTGTCTCCGTGGTGGAAATGGTCTGTGACAATTTGTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| 3UTR TCA 90 bp | GAAGAGAATCAGACTAGTGACAGTTGGGTGTCCAGACAAGCAGTGTaGCCACCAACATCAATGTCTTATTCTTCCCCTGTGATCAGGACT | + |
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Preference number: 1 (lower is better) Translates to: EENQTSDSWVSRQAV*PPTSMSYSSPVIRT Trigger: AGTCCTGATCACAGGGGAAGAATAAGACATTGATGTTGGTGGTCACACTGCTTGTCTGGACACCCAACTGTCACTAGTCTGATTCTCTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| 3UTR GCA 90 bp | GTCAAGTATCCAACCACAGAGAAAACACTAATTCCAGCATATTACTaGGAAACCGAACCTGTGAGCTGGAGGGACTCGTACCCTTTGCTT | + |
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Preference number: 1 (lower is better) Translates to: VKYPTTEKTLIPAYY*ETEPVSWRDSYPLL Trigger: AAGCAAAGGGTACGAGTCCCTCCAGCTCACAGGTTCGGTTTCGCAGTAATATGCTGGAATTAGTGTTTTCTCTGTGGTTGGATACTTGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| 3UTR GCA 90 bp | CCCTCTTACACCCACAGTTCACTGTGGGATGACCTGTATGTCCGCTaGCTTATTTACATTTCTCTTTCATTTGGAAGCAGCCTAGATGTC | + |
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Preference number: 1 (lower is better) Translates to: PSYTHSSLWDDLYVR*LIYISLSFGSSLDV Trigger: GACATCTAGGCTGCTTCCAAATGAAAGAGAAATGTAAATAAGGCAGCGGACATACAGGTCATCCCACAGTGAACTGTGGGTGTAAGAGGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| 3UTR GCA 90 bp | CACATGTTTCACATGCATGTCTATTCTTTTGCTAAGGGACCTTCATaGAAATGCATTTCCAACAGAAAACTAACATACAATGCCACATGT | + |
|
Preference number: 1 (lower is better) Translates to: HMFHMHVYSFAKGPS*KCISNRKLTYNATC Trigger: ACATGTGGCATTGTATGTTAGTTTTCTGTTGGAAATGCATTTGCATGAAGGTCCCTTAGCAAAAGAATAGACATGCATGTGAAACATGTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| 3UTR GCA 90 bp | TCCCACAGAGACATAAAGTTAACATACAATGTCACATGTTTCACATaGATGTCTATTCTTTTGCTAAGGGACCTTCATGCAAATGCATTT | + |
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Preference number: 1 (lower is better) Translates to: SHRDIKLTYNVTCFT*MSILLLRDLHANAF Trigger: AAATGCATTTGCATGAAGGTCCCTTAGCAAAAGAATAGACATGCATGTGAAACATGTGACATTGTATGTTAACTTTATGTCTCTGTGGGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| 3UTR CAA 90 bp | TTGAGCTTTCGTCCCTTTCCTCTACTCCAGACTGGAGAAAATGGCTaGTCTTTGCTGTGGACCGGGCCTTTGATGGTTGCTAGGGGCAGG | + |
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Preference number: 2 (lower is better) Translates to: LSFRPFPLLQTGENG*SLLWTGPLMVARGR Trigger: CCTGCCCCTAGCAACCATCAAAGGCCCGGTCCACAGCAAAGACAAGCCATTTTCTCCAGTCTGGAGTAGAGGAAAGGGACGAAAGCTCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| 3UTR-3UTR TCA 90 bp | CTCAAGGACTCTAGGCAGAAAATTCAACTTGGAAATTACAAACACCGCAAGCGCCACTGCTCTGGCCACTaGCACCTGTACCCTTCCTTC | + |
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Preference number: 2 (lower is better) Translates to: LKDSRQKIQLGNYKHRKRHCSGH*HLYPSF Trigger: GAAGGAAGGGTACAGGTGTCAGTGGCCAGAGCAGTG...GCGCTTGCGGTGTTTGTAATTTCCAAGTTGAATTTTCTGCCTAGAGTCCTTGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| 3UTR-3UTR CCA 90 bp | GTGCTTGAGCTTTCGTCCCTTTCCTCTACTCCAGACTGGAGAAAATGGCTTGTCAGACAGCGAGAGGCATaGAGGTTTTCACAAAACACG | + |
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Preference number: 2 (lower is better) Translates to: VLELSSLSSTPDWRKWLVRQREA*RFSQNT Trigger: CGTGTTTTGTGAAAACCTCCATGCCTCTCGCTGTCT...GACAAGCCATTTTCTCCAGTCTGGAGTAGAGGAAAGGGACGAAAGCTCAAGCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| 3UTR-3UTR GCA 90 bp | CAGGTCACTTACCAAGTCAGGCAGAGCATGGTGAAACCTCCTAAAAATGGAATGATAACCAAACGGAGCTaGAAAGGGGGCGAGGAACAA | + |
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Preference number: 2 (lower is better) Translates to: QVTYQVRQSMVKPPKNGMITKRS*KGGEEQ Trigger: TTGTTCCTCGCCCCCTTTGCAGCTCCGTTTGGTTAT...CATTCCATTTTTAGGAGGTTTCACCATGCTCTGCCTGACTTGGTAAGTGACCTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| 3UTR-3UTR CCA 90 bp | CACATGTTTCACATGCATGTCTATTCTTTTGCTAAGGGACCTTCATGCAAATGCAGCCAGTGTCAGGGTTaGTGCTTGAGCTTTCGTCCC | + |
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Preference number: 2 (lower is better) Translates to: HMFHMHVYSFAKGPSCKCSQCQG*CLSFRP Trigger: GGGACGAAAGCTCAAGCACCAACCCTGACACTGGCT...GCATTTGCATGAAGGTCCCTTAGCAAAAGAATAGACATGCATGTGAAACATGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| 3UTR-3UTR CCA 90 bp | CTGGAACACAAGGGCGATTTTGTTTACATAGAGATTAAAATGCCGTCAAGCGTGTCCAAAACACTGCTCTaGCCACTGACACCTGTACCC | + |
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Preference number: 2 (lower is better) Translates to: LEHKGDFVYIEIKMPSSVSKTLL*PLTPVP Trigger: GGGTACAGGTGTCAGTGGCCAGAGCAGTGTTTTGGA...CACGCTTGACGGCATTTTAATCTCTATGTAAACAAAATCGCCCTTGTGTTCCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| 3UTR-3UTR GCA 90 bp | CTCAAGGACTCTAGGCAGAAAATTCAACTTGGAAATTACAAACACCGCAAGCGCGTAAAAGGTGCATCCTaGAAACATGGACAGCAGCAT | + |
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Preference number: 2 (lower is better) Translates to: LKDSRQKIQLGNYKHRKRVKGAS*KHGQQH Trigger: ATGCTGCTGTCCATGTTTGCAGGATGCACCTTTTAC...GCGCTTGCGGTGTTTGTAATTTCCAAGTTGAATTTTCTGCCTAGAGTCCTTGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| 3UTR-3UTR CCA 90 bp | CACATGTTTCACATGCATGTCTATTCTTTTGCTAAGGGACCTTCATGCAAATGCCCAGACTGGAGAAAATaGCTTGTCTTTGCTGTGGAC | + |
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Preference number: 2 (lower is better) Translates to: HMFHMHVYSFAKGPSCKCPDWRK*LVFAVD Trigger: GTCCACAGCAAAGACAAGCCATTTTCTCCAGTCTGG...GCATTTGCATGAAGGTCCCTTAGCAAAAGAATAGACATGCATGTGAAACATGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| 3UTR-3UTR TCA 90 bp | CACATGTTTCACATGCATGTCTATTCTTTTGCTAAGGGACCTTCATGCAAATGCCTTATTCTTCCCCTGTaGTCAGGACTAGAGTCACTT | + |
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Preference number: 2 (lower is better) Translates to: HMFHMHVYSFAKGPSCKCLILPL*SGLESL Trigger: AAGTGACTCTAGTCCTGATCACAGGGGAAGAATAAG...GCATTTGCATGAAGGTCCCTTAGCAAAAGAATAGACATGCATGTGAAACATGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| 3UTR-3UTR TCA 90 bp | CTCAAGGACTCTAGGCAGAAAATTCAACTTGGAAATTACAAACACCGCAAGCGCCCAAGAACTGATAAATaGTTATGTGTGAGAAAGCCA | + |
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Preference number: 2 (lower is better) Translates to: LKDSRQKIQLGNYKHRKRPRTDK*LCVRKP Trigger: TGGCTTTCTCACACATAATCATTTATCAGTTCTTGG...GCGCTTGCGGTGTTTGTAATTTCCAAGTTGAATTTTCTGCCTAGAGTCCTTGAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| 3UTR CCA 72 bp | GGGGAGGAGGGAAAGGCACACAGCCAGTGTCAGGGTTaGTGCTTGAGCTTTCGTCCCTTTCCTCTACTCCAG | + |
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Preference number: 3 (lower is better) Translates to: GEEGKAHSQCQG*CLSFRPFPLLQ Trigger: CTGGAGTAGAGGAAAGGGACGAAAGCTCAAGCACCAACCCTGACACTGGCTGTGTGCCTTTCCCTCCTCCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| 3UTR TCA 72 bp | ATCTTCGCTGGGATCCAGAGGGCCACGTGGCTCTGTTaGGCACAGCAAGTCTCTTGGCATCCAAAACACTGC | + |
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Preference number: 3 (lower is better) Translates to: IFAGIQRATWLC*AQQVSWHPKHC Trigger: GCAGTGTTTTGGATGCCAAGAGACTTGCTGTGCTCAACAGAGCCACGTGGCCCTCTGGATCCCAGCGAAGAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| 3UTR TCA 72 bp | CAAGTCTCTTGGCATCCAAAACACTGCTCTGGCCACTaGCACCTGTACCCTTCCTTCATGTGTGATCCCACC | + |
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Preference number: 3 (lower is better) Translates to: QVSWHPKHCSGH*HLYPSFMCDPT Trigger: GGTGGGATCACACATGAAGGAAGGGTACAGGTGTCAGTGGCCAGAGCAGTGTTTTGGATGCCAAGAGACTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| 3UTR TCA 72 bp | AGCCTCAGACACCCCATATCCCAGTCACATCCACTGTaGCAGTGGACTCGGATTCCTATAATGGCTACAATG | + |
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Preference number: 3 (lower is better) Translates to: SLRHPISQSHPL*QWTRIPIMATM Trigger: CATTGTAGCCATTATAGGAATCCGAGTCCACTGTCACAGTGGATGTGACTGGGATATGGGGTGTCTGAGGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| 3UTR TCA 72 bp | ACAGGACCCCTCTTACACCCACAGTTCACTGTGGGATaGCCTGTATGTCCGCTGCCTTATTTACATTTCTCT | + |
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Preference number: 3 (lower is better) Translates to: TGPLLHPQFTVG*PVCPLPYLHFS Trigger: AGAGAAATGTAAATAAGGCAGCGGACATACAGGTCATCCCACAGTGAACTGTGGGTGTAAGAGGGGTCCTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| 3UTR GCA 72 bp | AGTGGTTTGTACAATGACAGCTCACCCAGGAGATTATaGATCTCCTCAGGTCACTTACCAAGTCAGGCAGAG | + |
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Preference number: 3 (lower is better) Translates to: SGLYNDSSPRRL*ISSGHLPSQAE Trigger: CTCTGCCTGACTTGGTAAGTGACCTGAGGAGATGCATAATCTCCTGGGTGAGCTGTCATTGTACAAACCACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| 3UTR GCA 72 bp | CCAACCACAGAGAAAACACTAATTCCAGCATATTACTaGGAAACCGAACCTGTGAGCTGGAGGGACTCGTAC | + |
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Preference number: 3 (lower is better) Translates to: PTTEKTLIPAYY*ETEPVSWRDSY Trigger: GTACGAGTCCCTCCAGCTCACAGGTTCGGTTTCGCAGTAATATGCTGGAATTAGTGTTTTCTCTGTGGTTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| 3UTR GCA 72 bp | AAATTCAACTTGGAAATTACAAACACCGCAAGCGCTTaGTCTGTACAGAGGAGAGGAAGCCTCAGACACCCC | + |
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Preference number: 3 (lower is better) Translates to: KFNLEITNTASA*SVQRRGSLRHP Trigger: GGGGTGTCTGAGGCTTCCTCTCCTCTGTACAGAGCAAGCGCTTGCGGTGTTTGTAATTTCCAAGTTGAATTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| 3UTR CCA 72 bp | TGTAGACAGGACCCCTCTTACACCCACAGTTCACTGTaGGATGACCTGTATGTCCGCTGCCTTATTTACATT | + |
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Preference number: 3 (lower is better) Translates to: CRQDPSYTHSSL*DDLYVRCLIYI Trigger: AATGTAAATAAGGCAGCGGACATACAGGTCATCCCACAGTGAACTGTGGGTGTAAGAGGGGTCCTGTCTACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| 3UTR-3UTR CAA 90 bp | CACATGTTTCACATGCATGTCTATTCTTTTGCTAAGGGACCTTCATGCAAATGCAGAGCCTTAGCAGCCTaGCTCATGCCTTGGCTGAAC | + |
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Preference number: 3 (lower is better) Translates to: HMFHMHVYSFAKGPSCKCRALAA*LMPWLN Trigger: GTTCAGCCAAGGCATGAGCAAGGCTGCTAAGGCTCT...GCATTTGCATGAAGGTCCCTTAGCAAAAGAATAGACATGCATGTGAAACATGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| 3UTR-3UTR CAA 90 bp | GTTGAGCCTGTTCTTAAATACCTTAATTGTAGTAAGTCATTTAAGCACCCAGAGCAGCCAGTGTCAGGGTaGGTGCTTGAGCTTTCGTCC | + |
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Preference number: 3 (lower is better) Translates to: VEPVLKYLNCSKSFKHPEQPVSG*VLELSS Trigger: GGACGAAAGCTCAAGCACCAACCCTGACACTGGCTG...CTCTGGGTGCTTAAATGACTTACTACAATTAAGGTATTTAAGAACAGGCTCAAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| 3UTR-3UTR CAA 90 bp | GTTGAGCCTGTTCTTAAATACCTTAATTGTAGTAAGTCATTTAAGCACCCAGAGGGCCACGTGGCTCTGTaGAGCACAGCAAGTCTCTTG | + |
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Preference number: 3 (lower is better) Translates to: VEPVLKYLNCSKSFKHPEGHVAL*STASLL Trigger: CAAGAGACTTGCTGTGCTCAACAGAGCCACGTGGCC...CTCTGGGTGCTTAAATGACTTACTACAATTAAGGTATTTAAGAACAGGCTCAAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| 3UTR TCA 72 bp | CTCTGGCCACTGACACCTGTACCCTTCCTTCATGTGTaGTCCCACCCATGTGAAATAGTTCTTTTAAATAAC | + |
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Preference number: 3 (lower is better) Translates to: LWPLTPVPFLHV*SHPCEIVLLNN Trigger: GTTATTTAAAAGAACTATTTCACATGGGTGGGATCACACATGAAGGAAGGGTACAGGTGTCAGTGGCCAGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| 3UTR TCA 72 bp | TCTCAAATAAGAAGGAGCCGGATGTCTCTCCATTCCTaGAAAGAATGTAAAAGGTGCATCCTGCAAACATGG | + |
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Preference number: 3 (lower is better) Translates to: SQIRRSRMSLHS*KECKRCILQTW Trigger: CCATGTTTGCAGGATGCACCTTTTACATTCTTTTCAGGAATGGAGAGACATCCGGCTCCTTCTTATTTGAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| 3UTR-3UTR CAA 90 bp | GTTGAGCCTGTTCTTAAATACCTTAATTGTAGTAAGTCATTTAAGCACCCAGAGAGCACAGCAAGTCTCTaGGCATCCAAAACACTGCTC | + |
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Preference number: 3 (lower is better) Translates to: VEPVLKYLNCSKSFKHPESTASL*ASKTLL Trigger: GAGCAGTGTTTTGGATGCCAAGAGACTTGCTGTGCT...CTCTGGGTGCTTAAATGACTTACTACAATTAAGGTATTTAAGAACAGGCTCAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| 3UTR TCA 72 bp | TGTGACCACCAACATCAATGTCTTATTCTTCCCCTGTaGTCAGGACTAGAGTCACTTTGCTTAAGATTACTC | + |
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Preference number: 3 (lower is better) Translates to: CDHQHQCLILPL*SGLESLCLRLL Trigger: GAGTAATCTTAAGCAAAGTGACTCTAGTCCTGATCACAGGGGAAGAATAAGACATTGATGTTGGTGGTCACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| 3UTR TCA 72 bp | CTTTTCAGACACCAAGAACTGATAAATGATTATGTGTaGGAAAGCCATTCTAGTTTGACTCTGGGTGGCACA | + |
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Preference number: 3 (lower is better) Translates to: LFRHQELINDYV*ESHSSLTLGGT Trigger: TGTGCCACCCAGAGTCAAACTAGAATGGCTTTCTCACACATAATCATTTATCAGTTCTTGGTGTCTGAAAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| 3UTR-3UTR CAA 90 bp | GTTGAGCCTGTTCTTAAATACCTTAATTGTAGTAAGTCATTTAAGCACCCAGAGAAGGTTAGAGGCTCTTaGCAAATCAGTTGCAAACAA | + |
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Preference number: 3 (lower is better) Translates to: VEPVLKYLNCSKSFKHPEKVRGS*QISCKQ Trigger: TTGTTTGCAACTGATTTGCAAAGAGCCTCTAACCTT...CTCTGGGTGCTTAAATGACTTACTACAATTAAGGTATTTAAGAACAGGCTCAAC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| 3UTR-3UTR CAA 90 bp | AACAAGTTACTACAGGCATATATTTTCCCAAACACAACAACAGTTGAACACAACCCACTTTGTAAAGATTaGGACATCTCATTCACCTTA | + |
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Preference number: 3 (lower is better) Translates to: NKLLQAYIFPNTTTVEHNPLCKD*DISFTL Trigger: TAAGGTGAATGAGATGTCCAAATCTTTACAAAGTGG...GTTGTGTTCAACTGTTGTTGTGTTTGGGAAAATATATGCCTGTAGTAACTTGTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| 3UTR TCA 72 bp | ACTACAGGCATATATTTTCCCAAACACAACAACAGTTaGACACAACAGTTGGGCTATATTGTTTACATAGAG | + |
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Preference number: 3 (lower is better) Translates to: TTGIYFPKHNNS*TQQLGYIVYIE Trigger: CTCTATGTAAACAATATAGCCCAACTGTTGTGTTCAACTGTTGTTGTGTTTGGGAAAATATATGCCTGTAGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| 3UTR GCA 72 bp | CACATGCATGTCTATTCTTTTGCTAAGGGACCTTCATaGAAATGCATTTCCAACAGAAAACTAACATACAAT | + |
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Preference number: 3 (lower is better) Translates to: HMHVYSFAKGPS*KCISNRKLTYN Trigger: ATTGTATGTTAGTTTTCTGTTGGAAATGCATTTGCATGAAGGTCCCTTAGCAAAAGAATAGACATGCATGTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| CDS-3UTR GCA 90 bp | CGCTGGGATCCAGAGGGCCACGTGGCTCTGTTGAGCACAGCAAGTCTCTTGGCACGGCCACGGCTAAGCTaGCCACAAAGAAGTACATGG | + |
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Preference number: 4 (lower is better) Translates to: RWDPEGHVALLSTASLLARPRLS*PQRSTW Trigger: CCATGTACTTCTTTGTGGGCAGCTTAGCCGTGGCCG...TGCCAAGAGACTTGCTGTGCTCAACAGAGCCACGTGGCCCTCTGGATCCCAGCG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| CDS-3UTR CCA 90 bp | CGCTGGGATCCAGAGGGCCACGTGGCTCTGTTGAGCACAGCAAGTCTCTTGGCACAGTCTCCCAGGCATTaGACATGCTCACCAGCATGT | + |
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Preference number: 4 (lower is better) Translates to: RWDPEGHVALLSTASLLAQSPRH*TCSPAC Trigger: ACATGCTGGTGAGCATGTCCAATGCCTGGGAGACTG...TGCCAAGAGACTTGCTGTGCTCAACAGAGCCACGTGGCCCTCTGGATCCCAGCG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| 3UTR CAA 72 bp | TGGGGAGGAGGGAAAGGCACACAGCCAGTGTCAGGGTaGGTGCTTGAGCTTTCGTCCCTTTCCTCTACTCCA | + |
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Preference number: 4 (lower is better) Translates to: WGGGKGTQPVSG*VLELSSLSSTP Trigger: TGGAGTAGAGGAAAGGGACGAAAGCTCAAGCACCAACCCTGACACTGGCTGTGTGCCTTTCCCTCCTCCCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| 3UTR CAA 72 bp | GAGGGCCACGTGGCTCTGTTGAGCACAGCAAGTCTCTaGGCATCCAAAACACTGCTCTGGCCACTGACACCT | + |
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Preference number: 4 (lower is better) Translates to: EGHVALLSTASL*ASKTLLWPLTP Trigger: AGGTGTCAGTGGCCAGAGCAGTGTTTTGGATGCCAAGAGACTTGCTGTGCTCAACAGAGCCACGTGGCCCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| 3UTR CAA 72 bp | GAGGGAAAGGCACACAGCCAGTGTCAGGGTTGGTGCTaGAGCTTTCGTCCCTTTCCTCTACTCCAGACTGGA | + |
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Preference number: 4 (lower is better) Translates to: EGKAHSQCQGWC*SFRPFPLLQTG Trigger: TCCAGTCTGGAGTAGAGGAAAGGGACGAAAGCTCAAGCACCAACCCTGACACTGGCTGTGTGCCTTTCCCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| 3UTR CAA 72 bp | TTTCCTCTACTCCAGACTGGAGAAAATGGCTTGTCTTaGCTGTGGACCGGGCCTTTGATGGTTGCTAGGGGC | + |
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Preference number: 4 (lower is better) Translates to: FPLLQTGENGLS*LWTGPLMVARG Trigger: GCCCCTAGCAACCATCAAAGGCCCGGTCCACAGCAAAGACAAGCCATTTTCTCCAGTCTGGAGTAGAGGAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| 3UTR CAA 72 bp | CGTCCCTTTCCTCTACTCCAGACTGGAGAAAATGGCTaGTCTTTGCTGTGGACCGGGCCTTTGATGGTTGCT | + |
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Preference number: 4 (lower is better) Translates to: RPFPLLQTGENG*SLLWTGPLMVA Trigger: AGCAACCATCAAAGGCCCGGTCCACAGCAAAGACAAGCCATTTTCTCCAGTCTGGAGTAGAGGAAAGGGACG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| CDS-3UTR TCA 90 bp | CTGGAACACAAGGGCGATTTTGTTTACATAGAGATTAAAATGCCGTCAAGCGTGTCCAGATGCAGGCGATaGTCACCCCCGAGCGCCTCG | + |
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Preference number: 4 (lower is better) Translates to: LEHKGDFVYIEIKMPSSVSRCRR*SPPSAS Trigger: CGAGGCGCTCGGGGGTGATCATCGCCTGCATCTGGA...CACGCTTGACGGCATTTTAATCTCTATGTAAACAAAATCGCCCTTGTGTTCCAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| CDS-3UTR TCA 90 bp | CGCTGGGATCCAGAGGGCCACGTGGCTCTGTTGAGCACAGCAAGTCTCTTGGCAATCATTAAGATAAGGTaGAGAAAGAAGGGAGACCAG | + |
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Preference number: 4 (lower is better) Translates to: RWDPEGHVALLSTASLLAIIKIR*RKKGDQ Trigger: CTGGTCTCCCTTCTTTCTTCACCTTATCTTAATGAT...TGCCAAGAGACTTGCTGTGCTCAACAGAGCCACGTGGCCCTCTGGATCCCAGCG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| CDS-3UTR TCA 90 bp | GAAGCCTCAGACACCCCATATCCCAGTCACATCCACTGTGACAGTGGACTCGGATTACTATGGCCCCAATaGCCAGGATGTTCTCTAAGA | + |
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Preference number: 4 (lower is better) Translates to: EASDTPYPSHIHCDSGLGLLWPQ*PGCSLR Trigger: TCTTAGAGAACATCCTGGTCATTGGGGCCATAGTAA...TCCGAGTCCACTGTCACAGTGGATGTGACTGGGATATGGGGTGTCTGAGGCTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| CDS-3UTR CCA 90 bp | CTCAAGGACTCTAGGCAGAAAATTCAACTTGGAAATTACAAACACCGCAAGCGCGCTATCCGCTTGACATaGTTCCGGGCCAGGAGGAAC | + |
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Preference number: 4 (lower is better) Translates to: LKDSRQKIQLGNYKHRKRAIRLT*FRARRN Trigger: GTTCCTCCTGGCCCGGAACCATGTCAAGCGGATAGC...GCGCTTGCGGTGTTTGTAATTTCCAAGTTGAATTTTCTGCCTAGAGTCCTTGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| CDS-3UTR TCA 90 bp | GTTGAGCCTGTTCTTAAATACCTTAATTGTAGTAAGTCATTTAAGCACCCAGAGAGCGCCTCGCGGTCATaGTGTGGTGGTAGCGCAAGG | + |
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Preference number: 4 (lower is better) Translates to: VEPVLKYLNCSKSFKHPESASRS*CGGSAR Trigger: CCTTGCGCTACCACCACATCATGACCGCGAGGCGCT...CTCTGGGTGCTTAAATGACTTACTACAATTAAGGTATTTAAGAACAGGCTCAAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| CDS-3UTR GCA 90 bp | CTGGAACACAAGGGCGATTTTGTTTACATAGAGATTAAAATGCCGTCAAGCGTGACACCTCCACGGCAATaGCCATTTCTTCACAGGCCA | + |
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Preference number: 4 (lower is better) Translates to: LEHKGDFVYIEIKMPSSVTPPRQ*PFLHRP Trigger: TGGCCTGTGAAGAAATGGGCATTGCCGTGGAGGTGT...CACGCTTGACGGCATTTTAATCTCTATGTAAACAAAATCGCCCTTGTGTTCCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| 3UTR CAA 72 bp | AAAATTCAACTTGGAAATTACAAACACCGCAAGCGCTaGCTCTGTACAGAGGAGAGGAAGCCTCAGACACCC | + |
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Preference number: 4 (lower is better) Translates to: KIQLGNYKHRKR*LCTEERKPQTP Trigger: GGGTGTCTGAGGCTTCCTCTCCTCTGTACAGAGCAAGCGCTTGCGGTGTTTGTAATTTCCAAGTTGAATTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| CDS-3UTR TCA 90 bp | CTGGAACACAAGGGCGATTTTGTTTACATAGAGATTAAAATGCCGTCAAGCGTGTTAGCAAGTATATGGTaGCAGTCTCCCAGGCATTGG | + |
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Preference number: 4 (lower is better) Translates to: LEHKGDFVYIEIKMPSSVLASIW*QSPRHW Trigger: CCAATGCCTGGGAGACTGTCACCATATACTTGCTAA...CACGCTTGACGGCATTTTAATCTCTATGTAAACAAAATCGCCCTTGTGTTCCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| CDS-3UTR GCA 90 bp | GAATGTAAAAGGTGCATCCTGCAAACATGGACAGCAGCATGGAGAAAGCTAAACCATTTGATCCTAAAATaGCATCCTCTGAGGCGTTCA | + |
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Preference number: 4 (lower is better) Translates to: ECKRCILQTWTAAWRKLNHLILK*HPLRRS Trigger: TGAACGCCTCAGAGGATGGCATTTTAGGATCAAATG...GTTTAGCTTTCTCCATGCTGCTGTCCATGTTTGCAGGATGCACCTTTTACATTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| CDS-3UTR GCA 90 bp | GTTGAGCCTGTTCTTAAATACCTTAATTGTAGTAAGTCATTTAAGCACCCAGAGTTCATGCTGGTCCTTTaGCTCACGGAGTTGTATCTG | + |
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Preference number: 4 (lower is better) Translates to: VEPVLKYLNCSKSFKHPEFMLVL*LTELYL Trigger: CAGATACAACTCCGTGAGGCAAAGGACCAGCATGAA...CTCTGGGTGCTTAAATGACTTACTACAATTAAGGTATTTAAGAACAGGCTCAAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| 3UTR CAA 72 bp | TACTACAGGCATATATTTTCCCAAACACAACAACAGTaGAACACAACAGTTGGGCTATATTGTTTACATAGA | + |
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Preference number: 4 (lower is better) Translates to: YYRHIFSQTQQQ*NTTVGLYCLHR Trigger: TCTATGTAAACAATATAGCCCAACTGTTGTGTTCAACTGTTGTTGTGTTTGGGAAAATATATGCCTGTAGTA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| CDS-3UTR CAA 90 bp | CGCTGGGATCCAGAGGGCCACGTGGCTCTGTTGAGCACAGCAAGTCTCTTGGCAGGTGAGTGCAGGTTTTaGTTCTTTACTATGGCCCCA | + |
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Preference number: 5 (lower is better) Translates to: RWDPEGHVALLSTASLLAGECRF*FFTMAP Trigger: TGGGGCCATAGTAAAGAACAAAAACCTGCACTCACC...TGCCAAGAGACTTGCTGTGCTCAACAGAGCCACGTGGCCCTCTGGATCCCAGCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| CDS GCA 90 bp | CTTCATGCTGGTCCTTTGCCTCACGGAGTTGTATCTGGGGGAAGCTaGTATCCGCTTGACATGGTTCCGGGCCAGGAGGAACATGTGTAT | + |
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Preference number: 5 (lower is better) Translates to: LHAGPLPHGVVSGGS*YPLDMVPGQEEHVY Trigger: ATACACATGTTCCTCCTGGCCCGGAACCATGTCAAGCGGATAGCAGCTTCCCCCAGATACAACTCCGTGAGGCAAAGGACCAGCATGAAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000172148.4 ENSMUST00000239469.2 |
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| CDS TCA 90 bp | TCCTTTGCCTCACGGAGTTGTATCTGGGGGAAGCTGCTATCCGCTTaGCATGGTTCCGGGCCAGGAGGAACATGTGTATATACAGAGACA | + |
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Preference number: 5 (lower is better) Translates to: SFASRSCIWGKLLSA*HGSGPGGTCVYTET Trigger: TGTCTCTGTATATACACATGTTCCTCCTGGCCCGGAACCATGTCAAGCGGATAGCAGCTTCCCCCAGATACAACTCCGTGAGGCAAAGGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000172148.4 ENSMUST00000239469.2 |
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| CDS GCA 90 bp | GCTGGAAGAGAATGCCCCCACTTCTTGGCATCGGATTTACCATTCTaGTCTGCTCCGCGCAAAGGTAAGCATGATTCTTCACGGGTTCCA | + |
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Preference number: 5 (lower is better) Translates to: AGRECPHFLASDLPF*SAPRKGKHDSSRVP Trigger: TGGAACCCGTGAAGAATCATGCTTACCTTTGCGCGGAGCAGAGCAGAATGGTAAATCCGATGCCAAGAAGTGGGGGCATTCTCTTCCAGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000239469.2 |
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| CDS-3UTR CAA 90 bp | CTGGAACACAAGGGCGATTTTGTTTACATAGAGATTAAAATGCCGTCAAGCGTGGGTCCTCCGCATCTCTaGGCTGCGGAGGGCGTAGAT | + |
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Preference number: 5 (lower is better) Translates to: LEHKGDFVYIEIKMPSSVGPPHL*AAEGVD Trigger: ATCTACGCCCTCCGCAGCCAAGAGATGCGGAGGACC...CACGCTTGACGGCATTTTAATCTCTATGTAAACAAAATCGCCCTTGTGTTCCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| CDS-3UTR CAA 90 bp | GAATGTAAAAGGTGCATCCTGCAAACATGGACAGCAGCATGGAGAAAGCTAAACGCCAAAGACTTGTTCTaGACATTTGATCCTAAAATG | + |
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Preference number: 5 (lower is better) Translates to: ECKRCILQTWTAAWRKLNAKDLF*TFDPKM Trigger: CATTTTAGGATCAAATGTCAAGAACAAGTCTTTGGC...GTTTAGCTTTCTCCATGCTGCTGTCCATGTTTGCAGGATGCACCTTTTACATTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172148.4 |
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| CDS GCA 72 bp | GGTCCTTTGCCTCACGGAGTTGTATCTGGGGGAAGCTaGTATCCGCTTGACATGGTTCCGGGCCAGGAGGAA | + |
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Preference number: 6 (lower is better) Translates to: GPLPHGVVSGGS*YPLDMVPGQEE Trigger: TTCCTCCTGGCCCGGAACCATGTCAAGCGGATAGCAGCTTCCCCCAGATACAACTCCGTGAGGCAAAGGACC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000172148.4 ENSMUST00000239469.2 |
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| CDS TCA 72 bp | TACCCGCCAAGGAGCCTACAAGGTCGCCGGAATCCGTaGCAACAGACGATCTCCTTAAAGGTCCTCCGCATC | + |
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Preference number: 6 (lower is better) Translates to: YPPRSLQGRRNP*QQTISLKVLRI Trigger: GATGCGGAGGACCTTTAAGGAGATCGTCTGTTGTCACGGATTCCGGCGACCTTGTAGGCTCCTTGGCGGGTA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000172148.4 ENSMUST00000239469.2 |
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| CDS GCA 72 bp | ATGGTGAGGGTAATAGCCCCCTTCATGCTGGTCCTTTaGCTCACGGAGTTGTATCTGGGGGAAGCTGCTATC | + |
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Preference number: 6 (lower is better) Translates to: MVRVIAPFMLVL*LTELYLGEAAI Trigger: GATAGCAGCTTCCCCCAGATACAACTCCGTGAGGCAAAGGACCAGCATGAAGGGGGCTATTACCCTCACCAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000172148.4 ENSMUST00000239469.2 |
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| CDS TCA 72 bp | TCACGGAGTTGTATCTGGGGGAAGCTGCTATCCGCTTaGCATGGTTCCGGGCCAGGAGGAACATGTGTATAT | + |
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Preference number: 6 (lower is better) Translates to: SRSCIWGKLLSA*HGSGPGGTCVY Trigger: ATATACACATGTTCCTCCTGGCCCGGAACCATGTCAAGCGGATAGCAGCTTCCCCCAGATACAACTCCGTGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000172148.4 ENSMUST00000239469.2 |
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| CDS GCA 72 bp | GAATGCCCCCACTTCTTGGCATCGGATTTACCATTCTaGTCTGCTCCGCGCAAAGGTAAGCATGATTCTTCA | + |
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Preference number: 6 (lower is better) Translates to: ECPHFLASDLPF*SAPRKGKHDSS Trigger: TGAAGAATCATGCTTACCTTTGCGCGGAGCAGAGCAGAATGGTAAATCCGATGCCAAGAAGTGGGGGCATTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000239469.2 |
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| CDS CCA 72 bp | ATTCAATACAGTCAGGGTGGAGGAGGAGTTCATTGCTaGAAGAGAATGCCCCCACTTCTTGGCATCGGATTT | + |
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Preference number: 6 (lower is better) Translates to: IQYSQGGGGVHC*KRMPPLLGIGF Trigger: AAATCCGATGCCAAGAAGTGGGGGCATTCTCTTCCAGCAATGAACTCCTCCTCCACCCTGACTGTATTGAAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000239469.2 |
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