Pregenerated sensors for MC4R (Mus musculus)
Ensembl gene IDs: ENSMUSG00000047259Ensembl transcript IDs: ENSMUST00000057942.4
Found 60 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TCTGAGTCTCGGGCAATGAACCATTCCTTCTTGGAGAAATGCATGTaGCAGAAATCTCACTTTCTCCTCAGTAGCTGCTTCTTCCCCCTT | + |
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Preference number: 1 (lower is better) Translates to: SESRAMNHSFLEKCM*QKSHFLLSSCFFPL Trigger: AAGGGGGAAGAAGCAGCTACTGAGGAGAAAGTGAGATTTCTGTCACATGCATTTCTCCAAGAAGGAATGGTTCATTGCCCGAGACTCAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| 3UTR CCA 90 bp | GGAACCAGATCCCTGGTAAGAAGCCAGAAAGAAATCATTCTGTTATaGTGGGGTATCATTTGGCATAGGAAATTTCAGCATGGTGTGGAC | + |
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Preference number: 1 (lower is better) Translates to: GTRSLVRSQKEIILL*WGIIWHRKFQHGVD Trigger: GTCCACACCATGCTGAAATTTCCTATGCCAAATGATACCCCACCATAACAGAATGATTTCTTTCTGGCTTCTTACCAGGGATCTGGTTCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| 3UTR CCA 90 bp | ACCAGATCCCTGGTAAGAAGCCAGAAAGAAATCATTCTGTTATGGTaGGGTATCATTTGGCATAGGAAATTTCAGCATGGTGTGGACAGT | + |
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Preference number: 1 (lower is better) Translates to: TRSLVRSQKEIILLW*GIIWHRKFQHGVDS Trigger: ACTGTCCACACCATGCTGAAATTTCCTATGCCAAATGATACCCCACCATAACAGAATGATTTCTTTCTGGCTTCTTACCAGGGATCTGGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| 3UTR TCA 90 bp | GCTCCACACTTTAGATATTTACAAACCCTGTCCCAAAATGTTTTGTaGTGTGGATTTGGCTTGGGAATTAAATCACTTGATCTTCAGCAC | + |
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Preference number: 1 (lower is better) Translates to: APHFRYLQTLSQNVL*CGFGLGIKSLDLQH Trigger: GTGCTGAAGATCAAGTGATTTAATTCCCAAGCCAAATCCACATCACAAAACATTTTGGGACAGGGTTTGTAAATATCTAAAGTGTGGAGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| 3UTR GCA 90 bp | CCTTTTATTTCAAAGTATACACAGACTAGAAAGCATAGATTTGGTTaGTCAGTGGCCACACCTTTGGTATTAGTTTGGAGAAAACAAGCA | + |
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Preference number: 1 (lower is better) Translates to: PFISKYTQTRKHRFG*SVATPLVLVWRKQA Trigger: TGCTTGTTTTCTCCAAACTAATACCAAAGGTGTGGCCACTGAGCAACCAAATCTATGCTTTCTAGTCTGTGTATACTTTGAAATAAAAGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| 3UTR CCA 90 bp | GTAAGAAGCCAGAAAGAAATCATTCTGTTATGGTGGGGTATCATTTaGCATAGGAAATTTCAGCATGGTGTGGACAGTTTATATTTAACA | + |
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Preference number: 1 (lower is better) Translates to: VRSQKEIILLWWGII*HRKFQHGVDSLYLT Trigger: TGTTAAATATAAACTGTCCACACCATGCTGAAATTTCCTATGCCAAATGATACCCCACCATAACAGAATGATTTCTTTCTGGCTTCTTAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| 3UTR CCA 90 bp | ATTTACAAACCCTGTCCCAAAATGTTTTGTGATGTGGATTTGGCTTaGGAATTAAATCACTTGATCTTCAGCACTTATATTCCAGCTCAA | + |
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Preference number: 1 (lower is better) Translates to: IYKPCPKMFCDVDLA*ELNHLIFSTYIPAQ Trigger: TTGAGCTGGAATATAAGTGCTGAAGATCAAGTGATTTAATTCCCAAGCCAAATCCACATCACAAAACATTTTGGGACAGGGTTTGTAAAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| 3UTR-3UTR CCA 90 bp | CCATTTGTGTTCTCTTTCCATCTCGTTATGTGCAAGCACCACAGGGCTCCACACTTTCCCCATAAACAGTaGGGTCAGTGCCTCTGCAGT | + |
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Preference number: 2 (lower is better) Translates to: PFVFSFHLVMCKHHRAPHFPHKQ*GQCLCS Trigger: ACTGCAGAGGCACTGACCCCACTGTTTATGGGGAAA...GTGTGGAGCCCTGTGGTGCTTGCACATAACGAGATGGAAAGAGAACACAAATGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| 3UTR-3UTR TCA 90 bp | ACACCTTTGGTATTAGTTTGGAGAAAACAAGCATTCCCCATCCCAAGACATGACGCTGACTTGCCTGTGTaGACTCTGAGTCTCGGGCAA | + |
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Preference number: 2 (lower is better) Translates to: TPLVLVWRKQAFPIPRHDADLPV*TLSLGQ Trigger: TTGCCCGAGACTCAGAGTTCACACAGGCAAGTCAGC...GTCATGTCTTGGGATGGGGAATGCTTGTTTTCTCCAAACTAATACCAAAGGTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| 3UTR-3UTR CCA 90 bp | CAGATCCCTGGTAAGAAGCCAGAAAGAAATCATTCTGTTATGGTGGGGTATCATAGAAGAGGCAGCTGTTaGGAAGTACACTGCTCAGAT | + |
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Preference number: 2 (lower is better) Translates to: QIPGKKPERNHSVMVGYHRRGSC*EVHCSD Trigger: ATCTGAGCAGTGTACTTCCCAACAGCTGCCTCTTCT...ATGATACCCCACCATAACAGAATGATTTCTTTCTGGCTTCTTACCAGGGATCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| 3UTR-3UTR GCA 90 bp | GAAATCATTCTGTTATGGTGGGGTATCATTTGGCATAGGAAATTTCAGCATGGTCAGAGTGACAAAGTCTaGAGGTATCTACCTAGTTTG | + |
|
Preference number: 2 (lower is better) Translates to: EIILLWWGIIWHRKFQHGQSDKV*RYLPSL Trigger: CAAACTAGGTAGATACCTGCAGACTTTGTCACTCTG...ACCATGCTGAAATTTCCTATGCCAAATGATACCCCACCATAACAGAATGATTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| 3UTR CAA 90 bp | TCAGTGTATTTGGACAGCAAGGATAATAGGCAAGCTTTTATTCGATaGCTCGAAATTTCACTAAGAGAGCTGACTCATTTTAATGATCAA | + |
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Preference number: 2 (lower is better) Translates to: SVYLDSKDNRQAFIR*LEISLRELTHFNDQ Trigger: TTGATCATTAAAATGAGTCAGCTCTCTTAGTGAAATTTCGAGCAATCGAATAAAAGCTTGCCTATTATCCTTGCTGTCCAAATACACTGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| 3UTR GCA 72 bp | AGTACACTGCTCAGATCGGGCCAGAGTGACAAAGTCTaGAGGTATCTACCTAGTTTGCACTCTGTCCCCCAC | + |
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Preference number: 3 (lower is better) Translates to: STLLRSGQSDKV*RYLPSLHSVPH Trigger: GTGGGGGACAGAGTGCAAACTAGGTAGATACCTGCAGACTTTGTCACTCTGGCCCGATCTGAGCAGTGTACT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| 3UTR CCA 72 bp | TTTTCAACCAAAGCATTACACAGAAGAGGCAGCTGTTaGGAAGTACACTGCTCAGATCGGGCCAGAGTGACA | + |
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Preference number: 3 (lower is better) Translates to: FSTKALHRRGSC*EVHCSDRARVT Trigger: TGTCACTCTGGCCCGATCTGAGCAGTGTACTTCCCAACAGCTGCCTCTTCTGTGTAATGCTTTGGTTGAAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| 3UTR TCA 72 bp | CGGGCAATGAACCATTCCTTCTTGGAGAAATGCATGTaGCAGAAATCTCACTTTCTCCTCAGTAGCTGCTTC | + |
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Preference number: 3 (lower is better) Translates to: RAMNHSFLEKCM*QKSHFLLSSCF Trigger: GAAGCAGCTACTGAGGAGAAAGTGAGATTTCTGTCACATGCATTTCTCCAAGAAGGAATGGTTCATTGCCCG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| 3UTR-3UTR CAA 90 bp | TCAGTGTATTTGGACAGCAAGGATAATAGGCAAGCTTTTATTCGATTGCTCGAACAGAAGAGGCAGCTGTaGGGAAGTACACTGCTCAGA | + |
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Preference number: 3 (lower is better) Translates to: SVYLDSKDNRQAFIRLLEQKRQL*GSTLLR Trigger: TCTGAGCAGTGTACTTCCCAACAGCTGCCTCTTCTG...TTCGAGCAATCGAATAAAAGCTTGCCTATTATCCTTGCTGTCCAAATACACTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| 3UTR GCA 72 bp | AGGACCCCATTTGTGTTCTCTTTCCATCTCGTTATGTaGAAGCACCACAGGGCTCCACACTTTAGATATTTA | + |
|
Preference number: 3 (lower is better) Translates to: RTPFVFSFHLVM*KHHRAPHFRYL Trigger: TAAATATCTAAAGTGTGGAGCCCTGTGGTGCTTGCACATAACGAGATGGAAAGAGAACACAAATGGGGTCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| 3UTR GCA 72 bp | TCAAAGTATACACAGACTAGAAAGCATAGATTTGGTTaGTCAGTGGCCACACCTTTGGTATTAGTTTGGAGA | + |
|
Preference number: 3 (lower is better) Translates to: SKYTQTRKHRFG*SVATPLVLVWR Trigger: TCTCCAAACTAATACCAAAGGTGTGGCCACTGAGCAACCAAATCTATGCTTTCTAGTCTGTGTATACTTTGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| 3UTR CCA 72 bp | CTGGTAAGAAGCCAGAAAGAAATCATTCTGTTATGGTaGGGTATCATTTGGCATAGGAAATTTCAGCATGGT | + |
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Preference number: 3 (lower is better) Translates to: LVRSQKEIILLW*GIIWHRKFQHG Trigger: ACCATGCTGAAATTTCCTATGCCAAATGATACCCCACCATAACAGAATGATTTCTTTCTGGCTTCTTACCAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| 3UTR CCA 72 bp | TCCCTGGTAAGAAGCCAGAAAGAAATCATTCTGTTATaGTGGGGTATCATTTGGCATAGGAAATTTCAGCAT | + |
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Preference number: 3 (lower is better) Translates to: SLVRSQKEIILL*WGIIWHRKFQH Trigger: ATGCTGAAATTTCCTATGCCAAATGATACCCCACCATAACAGAATGATTTCTTTCTGGCTTCTTACCAGGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| 3UTR CCA 72 bp | CAGAAAGAAATCATTCTGTTATGGTGGGGTATCATTTaGCATAGGAAATTTCAGCATGGTGTGGACAGTTTA | + |
|
Preference number: 3 (lower is better) Translates to: QKEIILLWWGII*HRKFQHGVDSL Trigger: TAAACTGTCCACACCATGCTGAAATTTCCTATGCCAAATGATACCCCACCATAACAGAATGATTTCTTTCTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| 3UTR CCA 72 bp | CCCTGTCCCAAAATGTTTTGTGATGTGGATTTGGCTTaGGAATTAAATCACTTGATCTTCAGCACTTATATT | + |
|
Preference number: 3 (lower is better) Translates to: PCPKMFCDVDLA*ELNHLIFSTYI Trigger: AATATAAGTGCTGAAGATCAAGTGATTTAATTCCCAAGCCAAATCCACATCACAAAACATTTTGGGACAGGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| CDS-3UTR GCA 90 bp | CACTGCTCAGATCGGGCCAGAGTGACAAAGTCTGCAGGTATCTACCTAGTTTGCGCAGCCCGTAGCTGCTaGGGTTCCAGAGGTGGAGGG | + |
|
Preference number: 4 (lower is better) Translates to: HCSDRARVTKSAGIYLVCAARSC*GSRGGG Trigger: CCCTCCACCTCTGGAACCGCAGCAGCTACGGGCTGC...GCAAACTAGGTAGATACCTGCAGACTTTGTCACTCTGGCCCGATCTGAGCAGTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| CDS-3UTR GCA 90 bp | CCATTTGTGTTCTCTTTCCATCTCGTTATGTGCAAGCACCACAGGGCTCCACACGGAGGGAAGTATACATaGCATGGTGGTGGGTGGAGT | + |
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Preference number: 4 (lower is better) Translates to: PFVFSFHLVMCKHHRAPHGGKYT*HGGGWS Trigger: ACTCCACCCACCACCATGGCATGTATACTTCCCTCC...GTGTGGAGCCCTGTGGTGCTTGCACATAACGAGATGGAAAGAGAACACAAATGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| CDS-3UTR GCA 90 bp | ACACCTTTGGTATTAGTTTGGAGAAAACAAGCATTCCCCATCCCAAGACATGACCGTGCAGCCCGTAGCTaGTGCGGTTCCAGAGGTGGA | + |
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Preference number: 4 (lower is better) Translates to: TPLVLVWRKQAFPIPRHDRAARS*CGSRGG Trigger: TCCACCTCTGGAACCGCAGCAGCTACGGGCTGCACG...GTCATGTCTTGGGATGGGGAATGCTTGTTTTCTCCAAACTAATACCAAAGGTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| CDS-3UTR GCA 90 bp | CCATTTGTGTTCTCTTTCCATCTCGTTATGTGCAAGCACCACAGGGCTCCACACGCTCACCAGCATATCTaGCACAGCCAGGCTACAGAT | + |
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Preference number: 4 (lower is better) Translates to: PFVFSFHLVMCKHHRAPHAHQHI*HSQATD Trigger: ATCTGTAGCCTGGCTGTGGCAGATATGCTGGTGAGC...GTGTGGAGCCCTGTGGTGCTTGCACATAACGAGATGGAAAGAGAACACAAATGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| CDS-3UTR GCA 90 bp | GGAAGTACACTGCTCAGATCGGGCCAGAGTGACAAAGTCTGCAGGTATCTACCTCAGGCTGCAAATGGATaGGAGCAAGGAGCTACAGAT | + |
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Preference number: 4 (lower is better) Translates to: GSTLLRSGQSDKVCRYLPQAANG*EQGATD Trigger: ATCTGTAGCTCCTTGCTCGCATCCATTTGCAGCCTG...AGGTAGATACCTGCAGACTTTGTCACTCTGGCCCGATCTGAGCAGTGTACTTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| CDS-3UTR GCA 90 bp | CATGTAGTGTTTAAATATTTCCCCATAAACAGTGGGGTCAGTGCCTCTGCAGTAGGCGGATGGTCCCTGTaGCTGGGAGGACAGCAATCC | + |
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Preference number: 4 (lower is better) Translates to: HVVFKYFPINSGVSASAVGGWSL*LGGQQS Trigger: GGATTGCTGTCCTCCCAGGCACAGGGACCATCCGCC...TACTGCAGAGGCACTGACCCCACTGTTTATGGGGAAATATTTAAACACTACATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| CDS-3UTR CCA 90 bp | ACCCCATTTGTGTTCTCTTTCCATCTCGTTATGTGCAAGCACCACAGGGCTCCACTGCGGTTCCAGAGGTaGAGGGAAGTATACATGCCA | + |
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Preference number: 4 (lower is better) Translates to: TPFVFSFHLVMCKHHRAPLRFQR*REVYMP Trigger: TGGCATGTATACTTCCCTCCACCTCTGGAACCGCAG...TGGAGCCCTGTGGTGCTTGCACATAACGAGATGGAAAGAGAACACAAATGGGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| CDS-3UTR CCA 90 bp | ACCCCATTTGTGTTCTCTTTCCATCTCGTTATGTGCAAGCACCACAGGGCTCCATTCACGGTGAAGCTCTaGGCATCCGTATCCGTACTG | + |
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Preference number: 4 (lower is better) Translates to: TPFVFSFHLVMCKHHRAPFTVKL*ASVSVL Trigger: CAGTACGGATACGGATGCCCAGAGCTTCACCGTGAA...TGGAGCCCTGTGGTGCTTGCACATAACGAGATGGAAAGAGAACACAAATGGGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| CDS-3UTR GCA 90 bp | CCATTTGTGTTCTCTTTCCATCTCGTTATGTGCAAGCACCACAGGGCTCCACACCAATGGAAAGCAGGCTaGAAATGGATGCGAGCAAGG | + |
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Preference number: 4 (lower is better) Translates to: PFVFSFHLVMCKHHRAPHQWKAG*KWMRAR Trigger: CCTTGCTCGCATCCATTTGCAGCCTGCTTTCCATTG...GTGTGGAGCCCTGTGGTGCTTGCACATAACGAGATGGAAAGAGAACACAAATGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| CDS-3UTR CCA 90 bp | CCATTTGTGTTCTCTTTCCATCTCGTTATGTGCAAGCACCACAGGGCTCCACACAAAGCAGGCTGCAAATaGATGCGAGCAAGGAGCTAC | + |
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Preference number: 4 (lower is better) Translates to: PFVFSFHLVMCKHHRAPHKAGCK*MRARSY Trigger: GTAGCTCCTTGCTCGCATCCATTTGCAGCCTGCTTT...GTGTGGAGCCCTGTGGTGCTTGCACATAACGAGATGGAAAGAGAACACAAATGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| 3UTR CAA 72 bp | ATTTTCAACCAAAGCATTACACAGAAGAGGCAGCTGTaGGGAAGTACACTGCTCAGATCGGGCCAGAGTGAC | + |
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Preference number: 4 (lower is better) Translates to: IFNQSITQKRQL*GSTLLRSGQSD Trigger: GTCACTCTGGCCCGATCTGAGCAGTGTACTTCCCAACAGCTGCCTCTTCTGTGTAATGCTTTGGTTGAAAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| 3UTR CAA 72 bp | CAGCAGGGTGTTTTACTGTACCTTCCAGGACCCCATTaGTGTTCTCTTTCCATCTCGTTATGTGCAAGCACC | + |
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Preference number: 4 (lower is better) Translates to: QQGVLLYLPGPH*CSLSISLCAST Trigger: GGTGCTTGCACATAACGAGATGGAAAGAGAACACAAATGGGGTCCTGGAAGGTACAGTAAAACACCCTGCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| CDS-3UTR GCA 90 bp | CAGATCCCTGGTAAGAAGCCAGAAAGAAATCATTCTGTTATGGTGGGGTATCATGGACGCCTGACACAGTaGAAGCTGCCCAGATACAAC | + |
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Preference number: 4 (lower is better) Translates to: QIPGKKPERNHSVMVGYHGRLTQ*KLPRYN Trigger: GTTGTATCTGGGCAGCTTGCACTGTGTCAGGCGTCC...ATGATACCCCACCATAACAGAATGATTTCTTTCTGGCTTCTTACCAGGGATCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| CDS-3UTR TCA 90 bp | CTAGACCTTTCTGTAGGAACCAGATCCCTGGTAAGAAGCCAGAAAGAAATCATTGCAATCCTCTTAATGTaGAGCCTCGCCATCAGGAAC | + |
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Preference number: 4 (lower is better) Translates to: LDLSVGTRSLVRSQKEIIAILLM*SLAIRN Trigger: GTTCCTGATGGCGAGGCTTCACATTAAGAGGATTGC...AATGATTTCTTTCTGGCTTCTTACCAGGGATCTGGTTCCTACAGAAAGGTCTAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| CDS-3UTR CCA 90 bp | AGATATTTTCAACCAAAGCATTACACAGAAGAGGCAGCTGTTGGGAAGTACACTACCTGTCCACCGCAATaGAAAGCAGGCTGCAAATGG | + |
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Preference number: 4 (lower is better) Translates to: RYFQPKHYTEEAAVGKYTTCPPQ*KAGCKW Trigger: CCATTTGCAGCCTGCTTTCCATTGCGGTGGACAGGT...AGTGTACTTCCCAACAGCTGCCTCTTCTGTGTAATGCTTTGGTTGAAAATATCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| CDS-3UTR CCA 90 bp | CATGTAGTGTTTAAATATTTCCCCATAAACAGTGGGGTCAGTGCCTCTGCAGTAGCAGGTTCTTGTTCTTaGCTATCGCCACGATCACTA | + |
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Preference number: 4 (lower is better) Translates to: HVVFKYFPINSGVSASAVAGSCS*LSPRSL Trigger: TAGTGATCGTGGCGATAGCCAAGAACAAGAACCTGC...TACTGCAGAGGCACTGACCCCACTGTTTATGGGGAAATATTTAAACACTACATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| CDS-3UTR CCA 90 bp | AGATATTTTCAACCAAAGCATTACACAGAAGAGGCAGCTGTTGGGAAGTACACTGAAGCACACGCAGTATaGATTCTGAGGGCAAGAGAT | + |
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Preference number: 4 (lower is better) Translates to: RYFQPKHYTEEAAVGKYTEAHAV*ILRARD Trigger: ATCTCTTGCCCTCAGAATCCATACTGCGTGTGCTTC...AGTGTACTTCCCAACAGCTGCCTCTTCTGTGTAATGCTTTGGTTGAAAATATCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| CDS-3UTR TCA 90 bp | CATGTAGTGTTTAAATATTTCCCCATAAACAGTGGGGTCAGTGCCTCTGCAGTAAGATACAAATTAAAATaGGACATGAAGCACACGCAG | + |
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Preference number: 4 (lower is better) Translates to: HVVFKYFPINSGVSASAVRYKLK*DMKHTQ Trigger: CTGCGTGTGCTTCATGTCTCATTTTAATTTGTATCT...TACTGCAGAGGCACTGACCCCACTGTTTATGGGGAAATATTTAAACACTACATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| 3UTR CAA 72 bp | TACAAACCCTGTCCCAAAATGTTTTGTGATGTGGATTaGGCTTGGGAATTAAATCACTTGATCTTCAGCACT | + |
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Preference number: 4 (lower is better) Translates to: YKPCPKMFCDVD*AWELNHLIFST Trigger: AGTGCTGAAGATCAAGTGATTTAATTCCCAAGCCAAATCCACATCACAAAACATTTTGGGACAGGGTTTGTA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| CDS-3UTR TCA 90 bp | GGCTTGGGAATTAAATCACTTGATCTTCAGCACTTATATTCCAGCTCAAAAAGTAGATCACAGAGTCAATaGCATTATCAATGTTCACGG | + |
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Preference number: 4 (lower is better) Translates to: GLGIKSLDLQHLYSSSKSRSQSQ*HYQCSR Trigger: CCGTGAACATTGATAATGTCATTGACTCTGTGATCT...ACTTTTTGAGCTGGAATATAAGTGCTGAAGATCAAGTGATTTAATTCCCAAGCC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| 3UTR CAA 72 bp | TTTTGTGATGTGGATTTGGCTTGGGAATTAAATCACTaGATCTTCAGCACTTATATTCCAGCTCAAAAAGTA | + |
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Preference number: 4 (lower is better) Translates to: FCDVDLAWELNH*IFSTYIPAQKV Trigger: TACTTTTTGAGCTGGAATATAAGTGCTGAAGATCAAGTGATTTAATTCCCAAGCCAAATCCACATCACAAAA 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| CDS GCA 90 bp | AGCATCCTCCGTCCGGGTGGCCCTTCCCCAGCGACTCGCTGGCATTaGCGTGCAGCCCGTAGCTGCTGCGGTTCCAGAGGTGGAGGGAAG | + |
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Preference number: 5 (lower is better) Translates to: SILRPGGPSPATRWH*RAARSCCGSRGGGK Trigger: CTTCCCTCCACCTCTGGAACCGCAGCAGCTACGGGCTGCACGGCAATGCCAGCGAGTCGCTGGGGAAGGGCCACCCGGACGGAGGATGCT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| CDS CCA 90 bp | GCTCATAGCATCCTCCGTCCGGGTGGCCCTTCCCCAGCGACTCGCTaGCATTGCCGTGCAGCCCGTAGCTGCTGCGGTTCCAGAGGTGGA | + |
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Preference number: 5 (lower is better) Translates to: AHSILRPGGPSPATR*HCRAARSCCGSRGG Trigger: TCCACCTCTGGAACCGCAGCAGCTACGGGCTGCACGGCAATGCCAGCGAGTCGCTGGGGAAGGGCCACCCGGACGGAGGATGCTATGAGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| CDS GCA 90 bp | CCTTCCCCAGCGACTCGCTGGCATTGCCGTGCAGCCCGTAGCTGCTaGGGTTCCAGAGGTGGAGGGAAGTATACATGCCATGGTGGTGGG | + |
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Preference number: 5 (lower is better) Translates to: PSPATRWHCRAARSC*GSRGGGKYTCHGGG Trigger: CCCACCACCATGGCATGTATACTTCCCTCCACCTCTGGAACCGCAGCAGCTACGGGCTGCACGGCAATGCCAGCGAGTCGCTGGGGAAGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| CDS GCA 90 bp | GGCCCTTCCCCAGCGACTCGCTGGCATTGCCGTGCAGCCCGTAGCTaGTGCGGTTCCAGAGGTGGAGGGAAGTATACATGCCATGGTGGT | + |
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Preference number: 5 (lower is better) Translates to: GPSPATRWHCRAARS*CGSRGGGKYTCHGG Trigger: ACCACCATGGCATGTATACTTCCCTCCACCTCTGGAACCGCAGCAGCTACGGGCTGCACGGCAATGCCAGCGAGTCGCTGGGGAAGGGCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| CDS CCA 90 bp | AATCGCCCCCTTCATGTTGGTACCCTGGCGGATGGTCCCTGTGCCTaGGAGGACAGCAATCCTCTTAATGTGAAGCCTCGCCATCAGGAA | + |
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Preference number: 5 (lower is better) Translates to: NRPLHVGTLADGPCA*EDSNPLNVKPRHQE Trigger: TTCCTGATGGCGAGGCTTCACATTAAGAGGATTGCTGTCCTCCCAGGCACAGGGACCATCCGCCAGGGTACCAACATGAAGGGGGCGATT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| CDS TCA 90 bp | GATGATGACAGCGCTGCTGTCCGAGTAAATGATGAAGAGGACGCCTaGCACAGTGCAAGCTGCCCAGATACAACTTATGATGATCCCGAC | + |
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Preference number: 5 (lower is better) Translates to: DDDSAAVRVNDEEDA*HSASCPDTTYDDPD Trigger: GTCGGGATCATCATAAGTTGTATCTGGGCAGCTTGCACTGTGTCAGGCGTCCTCTTCATCATTTACTCGGACAGCAGCGCTGTCATCATC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| CDS-3UTR CAA 90 bp | GAAGTACACTGCTCAGATCGGGCCAGAGTGACAAAGTCTGCAGGTATCTACCTAAGTTTTCCTCAGTTCTaGACTCCGGAGGGCATAAAT | + |
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Preference number: 5 (lower is better) Translates to: EVHCSDRARVTKSAGIYLSFPQF*TPEGIN Trigger: ATTTATGCCCTCCGGAGTCAAGAACTGAGGAAAACT...TAGGTAGATACCTGCAGACTTTGTCACTCTGGCCCGATCTGAGCAGTGTACTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| CDS GCA 90 bp | AGTGAAATACCTGTCCACCGCAATGGAAAGCAGGCTGCAAATGGATaGGAGCAAGGAGCTACAGATCACAGAGTCAATGACATTATCAAT | + |
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Preference number: 5 (lower is better) Translates to: SEIPVHRNGKQAANG*EQGATDHRVNDIIN Trigger: ATTGATAATGTCATTGACTCTGTGATCTGTAGCTCCTTGCTCGCATCCATTTGCAGCCTGCTTTCCATTGCGGTGGACAGGTATTTCACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| CDS-3UTR CAA 90 bp | AAAATGTTTTGTGATGTGGATTTGGCTTGGGAATTAAATCACTTGATCTTCAGCATCGCCCCCTTCATGTaGGTACCCTGGCGGATGGTC | + |
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Preference number: 5 (lower is better) Translates to: KMFCDVDLAWELNHLIFSIAPFM*VPWRMV Trigger: GACCATCCGCCAGGGTACCAACATGAAGGGGGCGAT...GCTGAAGATCAAGTGATTTAATTCCCAAGCCAAATCCACATCACAAAACATTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| CDS CCA 90 bp | CAGATCACAGAGTCAATGACATTATCAATGTTCACGGTGAAGCTCTaGGCATCCGTATCCGTACTGTTTAACAGGGTAATGACGATGGTT | + |
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Preference number: 5 (lower is better) Translates to: QITESMTLSMFTVKL*ASVSVLFNRVMTMV Trigger: AACCATCGTCATTACCCTGTTAAACAGTACGGATACGGATGCCCAGAGCTTCACCGTGAACATTGATAATGTCATTGACTCTGTGATCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| CDS-3UTR CAA 90 bp | GGCTTGGGAATTAAATCACTTGATCTTCAGCACTTATATTCCAGCTCAAAAAGTGGGGGAAACAAAAAGTaGCTCATAGCATCCTCCGTC | + |
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Preference number: 5 (lower is better) Translates to: GLGIKSLDLQHLYSSSKSGGNKK*LIASSV Trigger: GACGGAGGATGCTATGAGCAACTTTTTGTTTCCCCC...ACTTTTTGAGCTGGAATATAAGTGCTGAAGATCAAGTGATTTAATTCCCAAGCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| CDS CCA 72 bp | ATCCTCCGTCCGGGTGGCCCTTCCCCAGCGACTCGCTaGCATTGCCGTGCAGCCCGTAGCTGCTGCGGTTCC | + |
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Preference number: 6 (lower is better) Translates to: ILRPGGPSPATR*HCRAARSCCGS Trigger: GGAACCGCAGCAGCTACGGGCTGCACGGCAATGCCAGCGAGTCGCTGGGGAAGGGCCACCCGGACGGAGGAT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| CDS GCA 72 bp | CCAGCGACTCGCTGGCATTGCCGTGCAGCCCGTAGCTaGTGCGGTTCCAGAGGTGGAGGGAAGTATACATGC | + |
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Preference number: 6 (lower is better) Translates to: PATRWHCRAARS*CGSRGGGKYTC Trigger: GCATGTATACTTCCCTCCACCTCTGGAACCGCAGCAGCTACGGGCTGCACGGCAATGCCAGCGAGTCGCTGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| CDS CCA 72 bp | ATGGTCAAGGTAATCGCCCCCTTCATGTTGGTACCCTaGCGGATGGTCCCTGTGCCTGGGAGGACAGCAATC | + |
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Preference number: 6 (lower is better) Translates to: MVKVIAPFMLVP*RMVPVPGRTAI Trigger: GATTGCTGTCCTCCCAGGCACAGGGACCATCCGCCAGGGTACCAACATGAAGGGGGCGATTACCTTGACCAT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| CDS GCA 72 bp | CCTGTCCACCGCAATGGAAAGCAGGCTGCAAATGGATaGGAGCAAGGAGCTACAGATCACAGAGTCAATGAC | + |
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Preference number: 6 (lower is better) Translates to: PVHRNGKQAANG*EQGATDHRVND Trigger: GTCATTGACTCTGTGATCTGTAGCTCCTTGCTCGCATCCATTTGCAGCCTGCTTTCCATTGCGGTGGACAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| CDS TCA 72 bp | AGCGCTGCTGTCCGAGTAAATGATGAAGAGGACGCCTaGCACAGTGCAAGCTGCCCAGATACAACTTATGAT | + |
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Preference number: 6 (lower is better) Translates to: SAAVRVNDEEDA*HSASCPDTTYD Trigger: ATCATAAGTTGTATCTGGGCAGCTTGCACTGTGTCAGGCGTCCTCTTCATCATTTACTCGGACAGCAGCGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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| CDS CCA 72 bp | GAGTCAATGACATTATCAATGTTCACGGTGAAGCTCTaGGCATCCGTATCCGTACTGTTTAACAGGGTAATG | + |
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Preference number: 6 (lower is better) Translates to: ESMTLSMFTVKL*ASVSVLFNRVM Trigger: CATTACCCTGTTAAACAGTACGGATACGGATGCCCAGAGCTTCACCGTGAACATTGATAATGTCATTGACTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057942.4 |
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