Pregenerated sensors for MBL2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024863

Ensembl transcript IDs: ENSMUST00000025797.7

Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR CCA 90 bp	GAACAAACTGCGGACGTCAGGAGTACCCTAAAGAATCAAGGAGGGCTGAGAAACGTGGCCACAGAGCCCTaGAATTCGGAGCACAGGGCC	+
Preference number: 4 (lower is better) Translates to: EQTADVRSTLKNQGGLRNVATEP*NSEHRA Trigger: GGCCCTGTGCTCCGAATTCCAGGGCTCTGTGGCCAC...GTTTCTCAGCCCTCCTTGATTCTTTAGGGTACTCCTGACGTCCGCAGTTTGTTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025797.7
CDS-3UTR TCA 90 bp	GAACAAACTGCGGACGTCAGGAGTACCCTAAAGAATCAAGGAGGGCTGAGAAACAAGCCTCTGAGCCCTTaGCCTGGTTCTCCCTTTTCT	+
Preference number: 4 (lower is better) Translates to: EQTADVRSTLKNQGGLRNKPLSP*PGSPFS Trigger: AGAAAAGGGAGAACCAGGTCAAGGGCTCAGAGGCTT...GTTTCTCAGCCCTCCTTGATTCTTTAGGGTACTCCTGACGTCCGCAGTTTGTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025797.7
CDS-3UTR CCA 90 bp	AACTGCGGACGTCAGGAGTACCCTAAAGAATCAAGGAGGGCTGAGAAACAAGCATCTGAGCCCTTGACCTaGTTCTCCCTTTTCTCCCTT	+
Preference number: 4 (lower is better) Translates to: NCGRQEYPKESRRAEKQASEPLT*FSLFSL Trigger: AAGGGAGAAAAGGGAGAACCAGGTCAAGGGCTCAGA...TGCTTGTTTCTCAGCCCTCCTTGATTCTTTAGGGTACTCCTGACGTCCGCAGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025797.7
CDS-3UTR CCA 90 bp	AACTGCGGACGTCAGGAGTACCCTAAAGAATCAAGGAGGGCTGAGAAACAAGCATCTTTGGCCACTTTCTaGATGGCCGAGTTTTCCTCA	+
Preference number: 4 (lower is better) Translates to: NCGRQEYPKESRRAEKQASLATF*MAEFSS Trigger: TGAGGAAAACTCGGCCATCCAGAAAGTGGCCAAAGA...TGCTTGTTTCTCAGCCCTCCTTGATTCTTTAGGGTACTCCTGACGTCCGCAGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025797.7
CDS-3UTR TCA 90 bp	TCCCATATTTTATTTTTCAGAACAAACTGCGGACGTCAGGAGTACCCTAAAGAAGGCCTTGCAAGCCTCTaGGCCCTTGACCTGGTTCTC	+
Preference number: 4 (lower is better) Translates to: SHILFFRTNCGRQEYPKEGLASL*ALDLVL Trigger: GAGAACCAGGTCAAGGGCTCAGAGGCTTGCAAGGCC...TTCTTTAGGGTACTCCTGACGTCCGCAGTTTGTTCTGAAAAATAAAATATGGGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025797.7
CDS-3UTR CCA 90 bp	TCCCATATTTTATTTTTCAGAACAAACTGCGGACGTCAGGAGTACCCTAAAGAAGAAGCCATTCAGGCCTaGAGAACTGCAGGTAACCAC	+
Preference number: 4 (lower is better) Translates to: SHILFFRTNCGRQEYPKEEAIQA*RTAGNH Trigger: GTGGTTACCTGCAGTTCTCCAGGCCTGAATGGCTTC...TTCTTTAGGGTACTCCTGACGTCCGCAGTTTGTTCTGAAAAATAAAATATGGGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025797.7
CDS-3UTR GCA 90 bp	TCCCATATTTTATTTTTCAGAACAAACTGCGGACGTCAGGAGTACCCTAAAGAAGCTAGTATCAAATTCTaGTCTGTCCCCACGGTCTCC	+
Preference number: 4 (lower is better) Translates to: SHILFFRTNCGRQEYPKEASIKF*SVPTVS Trigger: GGAGACCGTGGGGACAGAGCAGAATTTGATACTAGC...TTCTTTAGGGTACTCCTGACGTCCGCAGTTTGTTCTGAAAAATAAAATATGGGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000025797.7
CDS-3UTR CCA 90 bp	ATATTTTATTTTTCAGAACAAACTGCGGACGTCAGGAGTACCCTAAAGAATCAAACGTCCATCTTTGCCTaGGAAGCCATTCAGGCCTGG	+
Preference number: 4 (lower is better) Translates to: IFYFSEQTADVRSTLKNQTSIFA*EAIQAW Trigger: CCAGGCCTGAATGGCTTCCCAGGCAAAGATGGACGT...TTGATTCTTTAGGGTACTCCTGACGTCCGCAGTTTGTTCTGAAAAATAAAATAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025797.7
CDS-3UTR CCA 90 bp	ATATTTTATTTTTCAGAACAAACTGCGGACGTCAGGAGTACCCTAAAGAATCAACTCCCTTTTCTCCCTTaGCACCGTCACGTCCATCTT	+
Preference number: 4 (lower is better) Translates to: IFYFSEQTADVRSTLKNQLPFLP*HRHVHL Trigger: AAGATGGACGTGACGGTGCCAAGGGAGAAAAGGGAG...TTGATTCTTTAGGGTACTCCTGACGTCCGCAGTTTGTTCTGAAAAATAAAATAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000025797.7
CDS-3UTR CAA 90 bp	AACTGCGGACGTCAGGAGTACCCTAAAGAATCAAGGAGGGCTGAGAAACAAGCATCTCCCTTTTCTCCCTaGGCACCGTCACGTCCATCT	+
Preference number: 5 (lower is better) Translates to: NCGRQEYPKESRRAEKQASPFSP*APSRPS Trigger: AGATGGACGTGACGGTGCCAAGGGAGAAAAGGGAGA...TGCTTGTTTCTCAGCCCTCCTTGATTCTTTAGGGTACTCCTGACGTCCGCAGTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025797.7
CDS-3UTR CAA 90 bp	TCCCATATTTTATTTTTCAGAACAAACTGCGGACGTCAGGAGTACCCTAAAGAACCGTCACGTCCATCTTaGCCTGGGAAGCCATTCAGG	+
Preference number: 5 (lower is better) Translates to: SHILFFRTNCGRQEYPKEPSRPS*PGKPFR Trigger: CCTGAATGGCTTCCCAGGCAAAGATGGACGTGACGG...TTCTTTAGGGTACTCCTGACGTCCGCAGTTTGTTCTGAAAAATAAAATATGGGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025797.7
CDS-3UTR CAA 90 bp	ATATTTTATTTTTCAGAACAAACTGCGGACGTCAGGAGTACCCTAAAGAATCAACAAGCCTCTGAGCCCTaGACCTGGTTCTCCCTTTTC	+
Preference number: 5 (lower is better) Translates to: IFYFSEQTADVRSTLKNQQASEP*TWFSLF Trigger: GAAAAGGGAGAACCAGGTCAAGGGCTCAGAGGCTTG...TTGATTCTTTAGGGTACTCCTGACGTCCGCAGTTTGTTCTGAAAAATAAAATAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000025797.7