Pregenerated sensors for MBIP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021028Ensembl transcript IDs: ENSMUST00000021416.9, ENSMUST00000218118.2
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AAATACAAAACGTGTTGTTCAAGTGCAGTAAGGAGCAGTGCAGGCTaGGATGCTGAGAGGCTCTGGAGCCTGTTCCAATCGATTGTAATT | + |
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Preference number: 1 (lower is better) Translates to: KYKTCCSSAVRSSAG*DAERLWSLFQSIVI Trigger: AATTACAATCGATTGGAACAGGCTCCAGAGCCTCTCAGCATCCCAGCCTGCACTGCTCCTTACTGCACTTGAACAACACGTTTTGTATTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000218118.2 |
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| 3UTR-3UTR CCA 90 bp | TTGGTCTCTGCTTCTGTCTGTCTTATCTCTGTAGCTGTTGAGTTTTCTTTCATTGATGCTGAGAGGCTCTaGAGCCTGTTCCAATCGATT | + |
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Preference number: 2 (lower is better) Translates to: LVSASVCLISVAVEFSFIDAERL*SLFQSI Trigger: AATCGATTGGAACAGGCTCCAGAGCCTCTCAGCATC...AATGAAAGAAAACTCAACAGCTACAGAGATAAGACAGACAGAAGCAGAGACCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000218118.2 |
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| 3UTR TCA 72 bp | GTCAAGATGTACATCATTTCCAAACACTGCAGCATCTaGCTATTTGCTGTCAGACAAGTTTATGTTGAGGAA | + |
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Preference number: 3 (lower is better) Translates to: VKMYIISKHCSI*LFAVRQVYVEE Trigger: TTCCTCAACATAAACTTGTCTGACAGCAAATAGTCAGATGCTGCAGTGTTTGGAAATGATGTACATCTTGAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021416.9 |
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| CDS-3UTR TCA 90 bp | ATTTTCACCACATCATCTCTGAGGTTAAGCTTCAAAGAGGCAAACCAGCAACATAGAGGACCTCGCGGGTaGGGAGGGGGCTGGAGCATT | + |
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Preference number: 4 (lower is better) Translates to: IFTTSSLRLSFKEANQQHRGPRG*GGGWSI Trigger: AATGCTCCAGCCCCCTCCTCACCCGCGAGGTCCTCT...ATGTTGCTGGTTTGCCTCTTTGAAGCTTAACCTCAGAGATGATGTGGTGAAAAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000218118.2 |
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| CDS-3UTR TCA 90 bp | TTAATATCCAAAATGCCTCCTTTAAAACAGAAGGGACTAAGTTCCAACAGTGCAAGAGGACCTCGCGGGTaGGGAGGGGGCTGGAGCATT | + |
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Preference number: 4 (lower is better) Translates to: LISKMPPLKQKGLSSNSARGPRG*GGGWSI Trigger: AATGCTCCAGCCCCCTCCTCACCCGCGAGGTCCTCT...TGCACTGTTGGAACTTAGTCCCTTCTGTTTTAAAGGAGGCATTTTGGATATTAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000021416.9 |
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| CDS-3UTR TCA 90 bp | CTGCAAATAGTTAAGCATATGCATCTTAAAGGAAAGCAATGTGACAAGAGTGGTTGCAGGCTGGGATGCTaGGAGGCTCTGGAGCCTGTT | + |
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Preference number: 4 (lower is better) Translates to: LQIVKHMHLKGKQCDKSGCRLGC*EALEPV Trigger: AACAGGCTCCAGAGCCTCTCAGCATCCCAGCCTGCA...ACCACTCTTGTCACATTGCTTTCCTTTAAGATGCATATGCTTAACTATTTGCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021416.9 |
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| CDS-3UTR GCA 90 bp | CACCACATCATCTCTGAGGTTAAGCTTCAAAGAGGCAAACCAGCAACATCACAATGTCTTGTCAGGGTGTaGAAGGAGCGAAAGACTTCG | + |
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Preference number: 4 (lower is better) Translates to: HHIISEVKLQRGKPATSQCLVRV*KERKTS Trigger: CGAAGTCTTTCGCTCCTTGCACACCCTGACAAGACA...TTGTGATGTTGCTGGTTTGCCTCTTTGAAGCTTAACCTCAGAGATGATGTGGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218118.2 |
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| CDS-3UTR TCA 90 bp | CTGCAAATAGTTAAGCATATGCATCTTAAAGGAAAGCAATGTGACAAGAGTGGTGGAGTCTGCTTCTCTTaGCTTTCTGAGCAGGGCTCG | + |
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Preference number: 4 (lower is better) Translates to: LQIVKHMHLKGKQCDKSGGVCFS*LSEQGS Trigger: CGAGCCCTGCTCAGAAAGTCAAGAGAAGCAGACTCC...ACCACTCTTGTCACATTGCTTTCCTTTAAGATGCATATGCTTAACTATTTGCAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021416.9 |
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| CDS-3UTR TCA 90 bp | TTAATATCCAAAATGCCTCCTTTAAAACAGAAGGGACTAAGTTCCAACAGTGCATGTAGGTTTGTGACCTaGCCCTGCAATTCCTTCAGG | + |
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Preference number: 4 (lower is better) Translates to: LISKMPPLKQKGLSSNSACRFVT*PCNSFR Trigger: CCTGAAGGAATTGCAGGGTCAGGTCACAAACCTACA...TGCACTGTTGGAACTTAGTCCCTTCTGTTTTAAAGGAGGCATTTTGGATATTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021416.9 |
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| CDS-3UTR TCA 90 bp | TTAATATCCAAAATGCCTCCTTTAAAACAGAAGGGACTAAGTTCCAACAGTGCACGTTCTTCTACCGCCTaGTTACCACAATCTCGAAGC | + |
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Preference number: 4 (lower is better) Translates to: LISKMPPLKQKGLSSNSARSSTA*LPQSRS Trigger: GCTTCGAGATTGTGGTAATCAGGCGGTAGAAGAACG...TGCACTGTTGGAACTTAGTCCCTTCTGTTTTAAAGGAGGCATTTTGGATATTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021416.9 |
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| CDS-3UTR TCA 90 bp | CTGCAAATAGTTAAGCATATGCATCTTAAAGGAAAGCAATGTGACAAGAGTGGTGTCTGCAATCGCAGGTaGGCCTCAATATTCTGGAGT | + |
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Preference number: 4 (lower is better) Translates to: LQIVKHMHLKGKQCDKSGVCNRR*ASIFWS Trigger: ACTCCAGAATATTGAGGCTCACCTGCGATTGCAGAC...ACCACTCTTGTCACATTGCTTTCCTTTAAGATGCATATGCTTAACTATTTGCAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021416.9 |
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| CDS-3UTR GCA 90 bp | TTAATATCCAAAATGCCTCCTTTAAAACAGAAGGGACTAAGTTCCAACAGTGCATGTCTTGTCAGGGTGTaGAAGGAGCGAAAGACTTCG | + |
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Preference number: 4 (lower is better) Translates to: LISKMPPLKQKGLSSNSACLVRV*KERKTS Trigger: CGAAGTCTTTCGCTCCTTGCACACCCTGACAAGACA...TGCACTGTTGGAACTTAGTCCCTTCTGTTTTAAAGGAGGCATTTTGGATATTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021416.9 |
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| CDS-3UTR CCA 90 bp | TTAATATCCAAAATGCCTCCTTTAAAACAGAAGGGACTAAGTTCCAACAGTGCAGATGCTGAGAGGCTCTaGAGCCTGTTCCAATCGATT | + |
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Preference number: 4 (lower is better) Translates to: LISKMPPLKQKGLSSNSADAERL*SLFQSI Trigger: AATCGATTGGAACAGGCTCCAGAGCCTCTCAGCATC...TGCACTGTTGGAACTTAGTCCCTTCTGTTTTAAAGGAGGCATTTTGGATATTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021416.9 |
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| CDS-3UTR TCA 90 bp | TTAATATCCAAAATGCCTCCTTTAAAACAGAAGGGACTAAGTTCCAACAGTGCACTGCTTTTCCAGCCTTaGTCTGAACTACTTCTGGGT | + |
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Preference number: 4 (lower is better) Translates to: LISKMPPLKQKGLSSNSALLFQP*SELLLG Trigger: ACCCAGAAGTAGTTCAGATCAAGGCTGGAAAAGCAG...TGCACTGTTGGAACTTAGTCCCTTCTGTTTTAAAGGAGGCATTTTGGATATTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021416.9 |
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| CDS-3UTR TCA 90 bp | CTGCAAATAGTTAAGCATATGCATCTTAAAGGAAAGCAATGTGACAAGAGTGGTATCCAGTTCAGCCAGTaGATAGTTCTGTTGAGGTGG | + |
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Preference number: 4 (lower is better) Translates to: LQIVKHMHLKGKQCDKSGIQFSQ*IVLLRW Trigger: CCACCTCAACAGAACTATTCACTGGCTGAACTGGAT...ACCACTCTTGTCACATTGCTTTCCTTTAAGATGCATATGCTTAACTATTTGCAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021416.9 |
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| CDS-3UTR GCA 90 bp | CTGCAAATAGTTAAGCATATGCATCTTAAAGGAAAGCAATGTGACAAGAGTGGTAACGTGTTGTTCAAGTaGAGTAAGGAGCAGTGCAGG | + |
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Preference number: 4 (lower is better) Translates to: LQIVKHMHLKGKQCDKSGNVLFK*SKEQCR Trigger: CCTGCACTGCTCCTTACTGCACTTGAACAACACGTT...ACCACTCTTGTCACATTGCTTTCCTTTAAGATGCATATGCTTAACTATTTGCAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021416.9 |
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| CDS-3UTR TCA 90 bp | CTGCAAATAGTTAAGCATATGCATCTTAAAGGAAAGCAATGTGACAAGAGTGGTTTTCCAGCCTTGATCTaGACTACTTCTGGGTCAAAA | + |
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Preference number: 4 (lower is better) Translates to: LQIVKHMHLKGKQCDKSGFPALI*TTSGSK Trigger: TTTTGACCCAGAAGTAGTTCAGATCAAGGCTGGAAA...ACCACTCTTGTCACATTGCTTTCCTTTAAGATGCATATGCTTAACTATTTGCAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021416.9 |
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| CDS-3UTR GCA 90 bp | TTAATATCCAAAATGCCTCCTTTAAAACAGAAGGGACTAAGTTCCAACAGTGCATTCACTCTTGGTCTCTaGTTCTGTCTGTCTTATCTC | + |
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Preference number: 4 (lower is better) Translates to: LISKMPPLKQKGLSSNSAFTLGL*FCLSYL Trigger: GAGATAAGACAGACAGAAGCAGAGACCAAGAGTGAA...TGCACTGTTGGAACTTAGTCCCTTCTGTTTTAAAGGAGGCATTTTGGATATTAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021416.9 |
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| CDS-3UTR GCA 90 bp | TTAATATCCAAAATGCCTCCTTTAAAACAGAAGGGACTAAGTTCCAACAGTGCATCGTCTGTCAATTTCTaGTTTTCCAGCCTTGATCTG | + |
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Preference number: 4 (lower is better) Translates to: LISKMPPLKQKGLSSNSASSVNF*FSSLDL Trigger: CAGATCAAGGCTGGAAAAGCAGAAATTGACAGACGA...TGCACTGTTGGAACTTAGTCCCTTCTGTTTTAAAGGAGGCATTTTGGATATTAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021416.9 |
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| 3UTR CAA 72 bp | TGTACATCATTTCCAAACACTGCAGCATCTGACTATTaGCTGTCAGACAAGTTTATGTTGAGGAATACACTG | + |
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Preference number: 4 (lower is better) Translates to: CTSFPNTAASDY*LSDKFMLRNTL Trigger: CAGTGTATTCCTCAACATAAACTTGTCTGACAGCAAATAGTCAGATGCTGCAGTGTTTGGAAATGATGTACA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021416.9 |
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| CDS-3UTR GCA 90 bp | TTAATATCCAAAATGCCTCCTTTAAAACAGAAGGGACTAAGTTCCAACAGTGCAAGTATTCAGGAGAGATaGCCTCCAATTCAAGGATTT | + |
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Preference number: 4 (lower is better) Translates to: LISKMPPLKQKGLSSNSASIQER*PPIQGF Trigger: AAATCCTTGAATTGGAGGGCATCTCTCCTGAATACT...TGCACTGTTGGAACTTAGTCCCTTCTGTTTTAAAGGAGGCATTTTGGATATTAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021416.9 |
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| CDS-3UTR CCA 90 bp | TTAATATCCAAAATGCCTCCTTTAAAACAGAAGGGACTAAGTTCCAACAGTGCATTCAGGTCTAGTCTGTaGTCCATATGTATTCACAAC | + |
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Preference number: 4 (lower is better) Translates to: LISKMPPLKQKGLSSNSAFRSSL*SICIHN Trigger: GTTGTGAATACATATGGACCACAGACTAGACCTGAA...TGCACTGTTGGAACTTAGTCCCTTCTGTTTTAAAGGAGGCATTTTGGATATTAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021416.9 |
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| 3UTR CAA 72 bp | GCAGCATCTGACTATTTGCTGTCAGACAAGTTTATGTaGAGGAATACACTGCAAATAGTTAAGCATATGCAT | + |
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Preference number: 4 (lower is better) Translates to: AASDYLLSDKFM*RNTLQIVKHMH Trigger: ATGCATATGCTTAACTATTTGCAGTGTATTCCTCAACATAAACTTGTCTGACAGCAAATAGTCAGATGCTGC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021416.9 |
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| CDS-3UTR CCA 90 bp | TTAATATCCAAAATGCCTCCTTTAAAACAGAAGGGACTAAGTTCCAACAGTGCAGATCTGAACTACTTCTaGGTCAAAAAGGTTTTGTGT | + |
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Preference number: 4 (lower is better) Translates to: LISKMPPLKQKGLSSNSADLNYF*VKKVLC Trigger: ACACAAAACCTTTTTGACCCAGAAGTAGTTCAGATC...TGCACTGTTGGAACTTAGTCCCTTCTGTTTTAAAGGAGGCATTTTGGATATTAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000021416.9 |
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| CDS-3UTR GCA 90 bp | CTGCAAATAGTTAAGCATATGCATCTTAAAGGAAAGCAATGTGACAAGAGTGGTGACAGCATCAGTTCTTaGACAACTATTTTCTTGATT | + |
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Preference number: 4 (lower is better) Translates to: LQIVKHMHLKGKQCDKSGDSISS*TTIFLI Trigger: AATCAAGAAAATAGTTGTGCAAGAACTGATGCTGTC...ACCACTCTTGTCACATTGCTTTCCTTTAAGATGCATATGCTTAACTATTTGCAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021416.9 |
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| CDS-3UTR CCA 90 bp | TTAATATCCAAAATGCCTCCTTTAAAACAGAAGGGACTAAGTTCCAACAGTGCAATAGTTCTGTTGAGGTaGTTGGACTTTTCTTCTTTT | + |
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Preference number: 4 (lower is better) Translates to: LISKMPPLKQKGLSSNSAIVLLR*LDFSSF Trigger: AAAAGAAGAAAAGTCCAACCACCTCAACAGAACTAT...TGCACTGTTGGAACTTAGTCCCTTCTGTTTTAAAGGAGGCATTTTGGATATTAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021416.9 |
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| CDS GCA 90 bp | AAGACTTCGCAGAGGACCTCGCGGGTGAGGAGGGGGCTGGAGCATTaGTCCAGGCTCCTCTCGCTGCCGCTTGAGGAACTAAGCTCCGCA | + |
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Preference number: 5 (lower is better) Translates to: KTSQRTSRVRRGLEH*SRLLSLPLEELSSA Trigger: TGCGGAGCTTAGTTCCTCAAGCGGCAGCGAGAGGAGCCTGGAGCAATGCTCCAGCCCCCTCCTCACCCGCGAGGTCCTCTGCGAAGTCTT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021416.9 ENSMUST00000218118.2 |
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| CDS-3UTR CAA 90 bp | TTGGTCTCTGCTTCTGTCTGTCTTATCTCTGTAGCTGTTGAGTTTTCTTTCATTGAGGGGGCTGGAGCATaGCTCCAGGCTCCTCTCGCT | + |
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Preference number: 5 (lower is better) Translates to: LVSASVCLISVAVEFSFIEGAGA*LQAPLA Trigger: AGCGAGAGGAGCCTGGAGCAATGCTCCAGCCCCCTC...AATGAAAGAAAACTCAACAGCTACAGAGATAAGACAGACAGAAGCAGAGACCAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000218118.2 |
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| CDS CCA 90 bp | CTACATCACAGTCTTTGGGCTTCCCTTCATCTTGTAGGTCCTCGGTaGGATGTATGGCTCTTAGTTCACTCTTGGTCTCTGCTTCTGTCT | + |
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Preference number: 5 (lower is better) Translates to: LHHSLWASLHLVGPR*DVWLLVHSWSLLLS Trigger: AGACAGAAGCAGAGACCAAGAGTGAACTAAGAGCCATACATCCCACCGAGGACCTACAAGATGAAGGGAAGCCCAAAGACTGTGATGTAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021416.9 |
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| CDS-3UTR CAA 90 bp | TTAATATCCAAAATGCCTCCTTTAAAACAGAAGGGACTAAGTTCCAACAGTGCAGAGGGGGCTGGAGCATaGCTCCAGGCTCCTCTCGCT | + |
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Preference number: 5 (lower is better) Translates to: LISKMPPLKQKGLSSNSAEGAGA*LQAPLA Trigger: AGCGAGAGGAGCCTGGAGCAATGCTCCAGCCCCCTC...TGCACTGTTGGAACTTAGTCCCTTCTGTTTTAAAGGAGGCATTTTGGATATTAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000021416.9 |
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| CDS TCA 90 bp | CGCCTGATTACCACAATCTCGAAGCATGCCTGTAGGTTTGTGACCTaGCCCTGCAATTCCTTCAGGTCTAGTCTGTGGTCCATATGTATT | + |
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Preference number: 5 (lower is better) Translates to: RLITTISKHACRFVT*PCNSFRSSLWSICI Trigger: AATACATATGGACCACAGACTAGACCTGAAGGAATTGCAGGGTCAGGTCACAAACCTACAGGCATGCTTCGAGATTGTGGTAATCAGGCG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021416.9 |
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| CDS-3UTR CAA 90 bp | CTGCAAATAGTTAAGCATATGCATCTTAAAGGAAAGCAATGTGACAAGAGTGGTCTGAGCAGGGCTCGTTaGAGGGCACTAATTTTCTCA | + |
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Preference number: 5 (lower is better) Translates to: LQIVKHMHLKGKQCDKSGLSRAR*RALIFS Trigger: TGAGAAAATTAGTGCCCTCAAACGAGCCCTGCTCAG...ACCACTCTTGTCACATTGCTTTCCTTTAAGATGCATATGCTTAACTATTTGCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021416.9 |
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| CDS-3UTR CAA 90 bp | TTAATATCCAAAATGCCTCCTTTAAAACAGAAGGGACTAAGTTCCAACAGTGCATGGGTCAAAAAGGTTTaGTGTCTTTTTCACATCTCC | + |
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Preference number: 5 (lower is better) Translates to: LISKMPPLKQKGLSSNSAWVKKV*CLFHIS Trigger: GGAGATGTGAAAAAGACACAAAACCTTTTTGACCCA...TGCACTGTTGGAACTTAGTCCCTTCTGTTTTAAAGGAGGCATTTTGGATATTAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000021416.9 |
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| CDS-3UTR CAA 90 bp | CTGCAAATAGTTAAGCATATGCATCTTAAAGGAAAGCAATGTGACAAGAGTGGTAGAGAAGTTTACAGATaGGAAGTATTCAGGAGAGAT | + |
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Preference number: 5 (lower is better) Translates to: LQIVKHMHLKGKQCDKSGREVYR*EVFRRD Trigger: ATCTCTCCTGAATACTTCCAATCTGTAAACTTCTCT...ACCACTCTTGTCACATTGCTTTCCTTTAAGATGCATATGCTTAACTATTTGCAG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021416.9 |
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| CDS GCA 72 bp | CAGAGGACCTCGCGGGTGAGGAGGGGGCTGGAGCATTaGTCCAGGCTCCTCTCGCTGCCGCTTGAGGAACTA | + |
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Preference number: 6 (lower is better) Translates to: QRTSRVRRGLEH*SRLLSLPLEEL Trigger: TAGTTCCTCAAGCGGCAGCGAGAGGAGCCTGGAGCAATGCTCCAGCCCCCTCCTCACCCGCGAGGTCCTCTG 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021416.9 ENSMUST00000218118.2 |
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| CDS TCA 72 bp | TCTCTTGGTACTGGGCCACCTGTCTGCAATCGCAGGTaGGCCTCAATATTCTGGAGTCGTTCTTCTACCGCC | + |
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Preference number: 6 (lower is better) Translates to: SLGTGPPVCNRR*ASIFWSRSSTA Trigger: GGCGGTAGAAGAACGACTCCAGAATATTGAGGCTCACCTGCGATTGCAGACAGGTGGCCCAGTACCAAGAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021416.9 |
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| CDS GCA 72 bp | ACATCATCTCTGAGGTTAAGCTGTCTTGTCAGGGTGTaGAAGGAGCGAAAGACTTCGCAGAGGACCTCGCGG | + |
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Preference number: 6 (lower is better) Translates to: TSSLRLSCLVRV*KERKTSQRTSR Trigger: CCGCGAGGTCCTCTGCGAAGTCTTTCGCTCCTTGCACACCCTGACAAGACAGCTTAACCTCAGAGATGATGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021416.9 |
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| CDS TCA 72 bp | TCATGGAAGGTGAGCGGCCATGGAGTCTGCTTCTCTTaGCTTTCTGAGCAGGGCTCGTTTGAGGGCACTAAT | + |
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Preference number: 6 (lower is better) Translates to: SWKVSGHGVCFS*LSEQGSFEGTN Trigger: ATTAGTGCCCTCAAACGAGCCCTGCTCAGAAAGTCAAGAGAAGCAGACTCCATGGCCGCTCACCTTCCATGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021416.9 |
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| CDS TCA 72 bp | ACCACAATCTCGAAGCATGCCTGTAGGTTTGTGACCTaGCCCTGCAATTCCTTCAGGTCTAGTCTGTGGTCC | + |
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Preference number: 6 (lower is better) Translates to: TTISKHACRFVT*PCNSFRSSLWS Trigger: GGACCACAGACTAGACCTGAAGGAATTGCAGGGTCAGGTCACAAACCTACAGGCATGCTTCGAGATTGTGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021416.9 |
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| CDS GCA 72 bp | TACACGATTAAGCTGTATATCTGTCTTGTCAGGGTGTaGAAGGAGCGAAAGACTTCGCAGAGGACCTCGCGG | + |
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Preference number: 6 (lower is better) Translates to: YTIKLYICLVRV*KERKTSQRTSR Trigger: CCGCGAGGTCCTCTGCGAAGTCTTTCGCTCCTTGCACACCCTGACAAGACAGATATACAGCTTAATCGTGTA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218118.2 |
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| CDS CCA 72 bp | GCTTCCCTTCATCTTGTAGGTCCTCGGTGGGATGTATaGCTCTTAGTTCACTCTTGGTCTCTGCTTCTGTCT | + |
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Preference number: 6 (lower is better) Translates to: ASLHLVGPRWDV*LLVHSWSLLLS Trigger: AGACAGAAGCAGAGACCAAGAGTGAACTAAGAGCCATACATCCCACCGAGGACCTACAAGATGAAGGGAAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021416.9 |
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| CDS CCA 72 bp | AGTCTTTGGGCTTCCCTTCATCTTGTAGGTCCTCGGTaGGATGTATGGCTCTTAGTTCACTCTTGGTCTCTG | + |
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Preference number: 6 (lower is better) Translates to: SLWASLHLVGPR*DVWLLVHSWSL Trigger: CAGAGACCAAGAGTGAACTAAGAGCCATACATCCCACCGAGGACCTACAAGATGAAGGGAAGCCCAAAGACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021416.9 |
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| CDS CAA 90 bp | TCATCTTGTAGGTCCTCGGTGGGATGTATGGCTCTTAGTTCACTCTaGGTCTCTGCTTCTGTCTGTCTTATCTCTGTAGCTGTTGAGTTT | + |
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Preference number: 6 (lower is better) Translates to: SSCRSSVGCMALSSL*VSASVCLISVAVEF Trigger: AAACTCAACAGCTACAGAGATAAGACAGACAGAAGCAGAGACCAAGAGTGAACTAAGAGCCATACATCCCACCGAGGACCTACAAGATGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021416.9 |
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| CDS TCA 72 bp | TTTGAGGGCACTAATTTTCTCATCCAGTTCAGCCAGTaGATAGTTCTGTTGAGGTGGTTGGACTTTTCTTCT | + |
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Preference number: 6 (lower is better) Translates to: FEGTNFLIQFSQ*IVLLRWLDFSS Trigger: AGAAGAAAAGTCCAACCACCTCAACAGAACTATTCACTGGCTGAACTGGATGAGAAAATTAGTGCCCTCAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021416.9 |
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