Pregenerated sensors for MBD3L1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038691Ensembl transcript IDs: ENSMUST00000069218.5, ENSMUST00000213625.2, ENSMUST00000215255.2
Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | GTATTGGTGAGTTTAAAGTTTCAAGGTCTCAAAACAACAGCAAAAGATACTGCAGGGTGGGTACGGATGTaGTGTCAATGCTGGTGGCTT | + |
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Preference number: 4 (lower is better) Translates to: VLVSLKFQGLKTTAKDTAGWVRM*CQCWWL Trigger: AAGCCACCAGCATTGACATCACATCCGTACCCACCC...TGCAGTATCTTTTGCTGTTGTTTTGAGACCTTGAAACTTTAAACTCACCAATAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000069218.5 ENSMUST00000213625.2 |
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| CDS-3UTR CCA 90 bp | GTATTGGTGAGTTTAAAGTTTCAAGGTCTCAAAACAACAGCAAAAGATACTGCACCAGCAGGCTTGTTCTaGCTTCTCCAAGGTCTCCTC | + |
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Preference number: 4 (lower is better) Translates to: VLVSLKFQGLKTTAKDTAPAGLF*LLQGLL Trigger: GAGGAGACCTTGGAGAAGCCAGAACAAGCCTGCTGG...TGCAGTATCTTTTGCTGTTGTTTTGAGACCTTGAAACTTTAAACTCACCAATAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000069218.5 ENSMUST00000213625.2 |
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| CDS-3UTR GCA 90 bp | GTATTGGTGAGTTTAAAGTTTCAAGGTCTCAAAACAACAGCAAAAGATACTGCAGCTCAAAAGTTCTCCTaGACTGCTGTAGGCTTGGAG | + |
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Preference number: 4 (lower is better) Translates to: VLVSLKFQGLKTTAKDTAAQKFS*TAVGLE Trigger: CTCCAAGCCTACAGCAGTGCAGGAGAACTTTTGAGC...TGCAGTATCTTTTGCTGTTGTTTTGAGACCTTGAAACTTTAAACTCACCAATAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000069218.5 ENSMUST00000213625.2 |
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| CDS-3UTR GCA 90 bp | GTATTGGTGAGTTTAAAGTTTCAAGGTCTCAAAACAACAGCAAAAGATACTGCAAAAGTTCTCCTGCACTaGTGTAGGCTTGGAGTCCTT | + |
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Preference number: 4 (lower is better) Translates to: VLVSLKFQGLKTTAKDTAKVLLH*CRLGVL Trigger: AAGGACTCCAAGCCTACAGCAGTGCAGGAGAACTTT...TGCAGTATCTTTTGCTGTTGTTTTGAGACCTTGAAACTTTAAACTCACCAATAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000069218.5 ENSMUST00000213625.2 |
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| CDS-3UTR GCA 90 bp | GTATTGGTGAGTTTAAAGTTTCAAGGTCTCAAAACAACAGCAAAAGATACTGCATGGCAAGGTCTGAAGTaGTCAAAAGTTCTCCTGCAC | + |
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Preference number: 4 (lower is better) Translates to: VLVSLKFQGLKTTAKDTAWQGLK*SKVLLH Trigger: GTGCAGGAGAACTTTTGAGCACTTCAGACCTTGCCA...TGCAGTATCTTTTGCTGTTGTTTTGAGACCTTGAAACTTTAAACTCACCAATAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000069218.5 ENSMUST00000213625.2 |
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| CDS-3UTR GCA 90 bp | GTATTGGTGAGTTTAAAGTTTCAAGGTCTCAAAACAACAGCAAAAGATACTGCAAAGGATCTGTGGGCCTaGTTCTGGAATCATATTTGC | + |
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Preference number: 4 (lower is better) Translates to: VLVSLKFQGLKTTAKDTAKDLWA*FWNHIC Trigger: GCAAATATGATTCCAGAAGCAGGCCCACAGATCCTT...TGCAGTATCTTTTGCTGTTGTTTTGAGACCTTGAAACTTTAAACTCACCAATAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000069218.5 ENSMUST00000213625.2 |
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| CDS-3UTR CCA 90 bp | GTATTGGTGAGTTTAAAGTTTCAAGGTCTCAAAACAACAGCAAAAGATACTGCAACCTCATTGCCCAGGTaGGATGTGATTTTAGTGACT | + |
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Preference number: 4 (lower is better) Translates to: VLVSLKFQGLKTTAKDTATSLPR*DVILVT Trigger: AGTCACTAAAATCACATCCCACCTGGGCAATGAGGT...TGCAGTATCTTTTGCTGTTGTTTTGAGACCTTGAAACTTTAAACTCACCAATAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000069218.5 ENSMUST00000213625.2 |
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| CDS-3UTR CCA 90 bp | GTATTGGTGAGTTTAAAGTTTCAAGGTCTCAAAACAACAGCAAAAGATACTGCACTGTGGGCCTGCTTCTaGAATCATATTTGCCAAATG | + |
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Preference number: 4 (lower is better) Translates to: VLVSLKFQGLKTTAKDTALWACF*NHICQM Trigger: CATTTGGCAAATATGATTCCAGAAGCAGGCCCACAG...TGCAGTATCTTTTGCTGTTGTTTTGAGACCTTGAAACTTTAAACTCACCAATAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000069218.5 ENSMUST00000213625.2 |
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| CDS-3UTR TCA 90 bp | GTATTGGTGAGTTTAAAGTTTCAAGGTCTCAAAACAACAGCAAAAGATACTGCACGCAACTGTGTCTGTTaGTGTAAGATCTTTCAAAGT | + |
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Preference number: 4 (lower is better) Translates to: VLVSLKFQGLKTTAKDTARNCVC*CKIFQS Trigger: ACTTTGAAAGATCTTACATCAACAGACACAGTTGCG...TGCAGTATCTTTTGCTGTTGTTTTGAGACCTTGAAACTTTAAACTCACCAATAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000069218.5 ENSMUST00000213625.2 |
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| CDS-3UTR CCA 90 bp | GTATTGGTGAGTTTAAAGTTTCAAGGTCTCAAAACAACAGCAAAAGATACTGCATGTGATTTTAGTGACTaGCCTCTTGAATGTATAACT | + |
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Preference number: 4 (lower is better) Translates to: VLVSLKFQGLKTTAKDTACDFSD*PLECIT Trigger: AGTTATACATTCAAGAGGCCAGTCACTAAAATCACA...TGCAGTATCTTTTGCTGTTGTTTTGAGACCTTGAAACTTTAAACTCACCAATAC 34% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000069218.5 ENSMUST00000213625.2 |
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| CDS-3UTR CAA 90 bp | GTATTGGTGAGTTTAAAGTTTCAAGGTCTCAAAACAACAGCAAAAGATACTGCACTTCTGCCAGCAGGCTaGTTCTGGCTTCTCCAAGGT | + |
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Preference number: 5 (lower is better) Translates to: VLVSLKFQGLKTTAKDTALLPAG*FWLLQG Trigger: ACCTTGGAGAAGCCAGAACAAGCCTGCTGGCAGAAG...TGCAGTATCTTTTGCTGTTGTTTTGAGACCTTGAAACTTTAAACTCACCAATAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000069218.5 ENSMUST00000213625.2 |
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| CDS-3UTR CAA 90 bp | GTATTGGTGAGTTTAAAGTTTCAAGGTCTCAAAACAACAGCAAAAGATACTGCAGTAGGCTTGGAGTCCTaGAAGTCTCTTCTGCCAGCA | + |
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Preference number: 5 (lower is better) Translates to: VLVSLKFQGLKTTAKDTAVGLES*KSLLPA Trigger: TGCTGGCAGAAGAGACTTCAAGGACTCCAAGCCTAC...TGCAGTATCTTTTGCTGTTGTTTTGAGACCTTGAAACTTTAAACTCACCAATAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000069218.5 ENSMUST00000213625.2 |
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| CDS-3UTR CAA 90 bp | GTATTGGTGAGTTTAAAGTTTCAAGGTCTCAAAACAACAGCAAAAGATACTGCATGCACTGCTGTAGGCTaGGAGTCCTTGAAGTCTCTT | + |
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Preference number: 5 (lower is better) Translates to: VLVSLKFQGLKTTAKDTACTAVG*ESLKSL Trigger: AAGAGACTTCAAGGACTCCAAGCCTACAGCAGTGCA...TGCAGTATCTTTTGCTGTTGTTTTGAGACCTTGAAACTTTAAACTCACCAATAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000069218.5 ENSMUST00000213625.2 |
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| CDS-3UTR CAA 90 bp | GTATTGGTGAGTTTAAAGTTTCAAGGTCTCAAAACAACAGCAAAAGATACTGCAATAAGTTTGCCTTCCTaGACCCCCTCACTGTCTCCA | + |
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Preference number: 5 (lower is better) Translates to: VLVSLKFQGLKTTAKDTAISLPS*TPSLSP Trigger: TGGAGACAGTGAGGGGGTCAAGGAAGGCAAACTTAT...TGCAGTATCTTTTGCTGTTGTTTTGAGACCTTGAAACTTTAAACTCACCAATAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000069218.5 ENSMUST00000213625.2 |
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| CDS CCA 90 bp | AACGCCACTGCCAGTCTTTCTCTTGCTATTTTCACTTTCCTTTCCTaGTTAATAATATCCTGTTCAGTGACCAGAAATTCTTTGCAAAGG | + |
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Preference number: 5 (lower is better) Translates to: NATASLSLAIFTFLS*LIISCSVTRNSLQR Trigger: CCTTTGCAAAGAATTTCTGGTCACTGAACAGGATATTATTAACCAGGAAAGGAAAGTGAAAATAGCAAGAGAAAGACTGGCAGTGGCGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000069218.5 ENSMUST00000213625.2 ENSMUST00000215255.2 |
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| CDS-3UTR CAA 90 bp | GTATTGGTGAGTTTAAAGTTTCAAGGTCTCAAAACAACAGCAAAAGATACTGCAGTGACCAGAAATTCTTaGCAAAGGATCTGTGGGCCT | + |
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Preference number: 5 (lower is better) Translates to: VLVSLKFQGLKTTAKDTAVTRNS*QRICGP Trigger: AGGCCCACAGATCCTTTGCAAAGAATTTCTGGTCAC...TGCAGTATCTTTTGCTGTTGTTTTGAGACCTTGAAACTTTAAACTCACCAATAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000069218.5 ENSMUST00000213625.2 |
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| CDS-3UTR CAA 90 bp | GTATTGGTGAGTTTAAAGTTTCAAGGTCTCAAAACAACAGCAAAAGATACTGCAAGATCTTTCAAAGTCTaGGCAAGGTCTGAAGTGCTC | + |
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Preference number: 5 (lower is better) Translates to: VLVSLKFQGLKTTAKDTARSFKV*ARSEVL Trigger: GAGCACTTCAGACCTTGCCAAGACTTTGAAAGATCT...TGCAGTATCTTTTGCTGTTGTTTTGAGACCTTGAAACTTTAAACTCACCAATAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000069218.5 ENSMUST00000213625.2 |
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| CDS-3UTR CAA 90 bp | GTATTGGTGAGTTTAAAGTTTCAAGGTCTCAAAACAACAGCAAAAGATACTGCAACATCCTCAAGGGGATaGAAGTACTTAAACAAGGCT | + |
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Preference number: 5 (lower is better) Translates to: VLVSLKFQGLKTTAKDTATSSRG*KYLNKA Trigger: AGCCTTGTTTAAGTACTTCAATCCCCTTGAGGATGT...TGCAGTATCTTTTGCTGTTGTTTTGAGACCTTGAAACTTTAAACTCACCAATAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000069218.5 ENSMUST00000213625.2 |
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| CDS-3UTR CAA 90 bp | GTATTGGTGAGTTTAAAGTTTCAAGGTCTCAAAACAACAGCAAAAGATACTGCACTGCCAGTCTTTCTCTaGCTATTTTCACTTTCCTTT | + |
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Preference number: 5 (lower is better) Translates to: VLVSLKFQGLKTTAKDTALPVFL*LFSLSF Trigger: AAAGGAAAGTGAAAATAGCAAGAGAAAGACTGGCAG...TGCAGTATCTTTTGCTGTTGTTTTGAGACCTTGAAACTTTAAACTCACCAATAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000069218.5 ENSMUST00000213625.2 |
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| CDS-3UTR CAA 90 bp | GTATTGGTGAGTTTAAAGTTTCAAGGTCTCAAAACAACAGCAAAAGATACTGCACTTCTGGAATCATATTaGCCAAATGTGAAGATGACT | + |
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Preference number: 5 (lower is better) Translates to: VLVSLKFQGLKTTAKDTALLESY*PNVKMT Trigger: AGTCATCTTCACATTTGGCAAATATGATTCCAGAAG...TGCAGTATCTTTTGCTGTTGTTTTGAGACCTTGAAACTTTAAACTCACCAATAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000069218.5 ENSMUST00000213625.2 |
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| CDS CAA 72 bp | TTGCCTTCCTTGACCCCCTCACTGTCTCCATCTCACTaGCTAGCTTGTGTGCAATCAACGCCACTGCCAGTC | + |
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Preference number: 6 (lower is better) Translates to: LPSLTPSLSPSH*LACVQSTPLPV Trigger: GACTGGCAGTGGCGTTGATTGCACACAAGCTAGCAAGTGAGATGGAGACAGTGAGGGGGTCAAGGAAGGCAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000069218.5 ENSMUST00000213625.2 ENSMUST00000215255.2 |
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| CDS TCA 72 bp | AGGGTGGGTACGGATGTGATGTCAATGCTGGTGGCTTaGGTGTCTGAAGCAGACGCAACTGTGTCTGTTGAT | + |
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Preference number: 6 (lower is better) Translates to: RVGTDVMSMLVA*VSEADATVSVD Trigger: ATCAACAGACACAGTTGCGTCTGCTTCAGACACTCAAGCCACCAGCATTGACATCACATCCGTACCCACCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000069218.5 ENSMUST00000213625.2 ENSMUST00000215255.2 |
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| CDS GCA 72 bp | TGGCAAGGTCTGAAGTGCTCAAAAGTTCTCCTGCACTaGTGTAGGCTTGGAGTCCTTGAAGTCTCTTCTGCC | + |
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Preference number: 6 (lower is better) Translates to: WQGLKCSKVLLH*CRLGVLEVSSA Trigger: GGCAGAAGAGACTTCAAGGACTCCAAGCCTACAGCAGTGCAGGAGAACTTTTGAGCACTTCAGACCTTGCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000069218.5 ENSMUST00000213625.2 ENSMUST00000215255.2 |
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| CDS CAA 72 bp | CTTGACCCCCTCACTGTCTCCATCTCACTTGCTAGCTaGTGTGCAATCAACGCCACTGCCAGTCTTTCTCTT | + |
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Preference number: 6 (lower is better) Translates to: LDPLTVSISLAS*CAINATASLSL Trigger: AAGAGAAAGACTGGCAGTGGCGTTGATTGCACACAAGCTAGCAAGTGAGATGGAGACAGTGAGGGGGTCAAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000069218.5 ENSMUST00000213625.2 ENSMUST00000215255.2 |
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| CDS CAA 90 bp | TTTGCCTTCCTTGACCCCCTCACTGTCTCCATCTCACTTGCTAGCTaGTGTGCAATCAACGCCACTGCCAGTCTTTCTCTTGCTATTTTC | + |
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Preference number: 6 (lower is better) Translates to: FAFLDPLTVSISLAS*CAINATASLSLAIF Trigger: GAAAATAGCAAGAGAAAGACTGGCAGTGGCGTTGATTGCACACAAGCTAGCAAGTGAGATGGAGACAGTGAGGGGGTCAAGGAAGGCAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000069218.5 ENSMUST00000213625.2 ENSMUST00000215255.2 |
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| CDS CAA 72 bp | TGCAAAGGATCTGTGGGCCTGCTTCTGGAATCATATTaGCCAAATGTGAAGATGACTCAAGGGTGGGTACGG | + |
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Preference number: 6 (lower is better) Translates to: CKGSVGLLLESY*PNVKMTQGWVR Trigger: CCGTACCCACCCTTGAGTCATCTTCACATTTGGCAAATATGATTCCAGAAGCAGGCCCACAGATCCTTTGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000069218.5 ENSMUST00000213625.2 ENSMUST00000215255.2 |
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| CDS CAA 72 bp | GCAACTGTGTCTGTTGATGTAAGATCTTTCAAAGTCTaGGCAAGGTCTGAAGTGCTCAAAAGTTCTCCTGCA | + |
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Preference number: 6 (lower is better) Translates to: ATVSVDVRSFKV*ARSEVLKSSPA Trigger: TGCAGGAGAACTTTTGAGCACTTCAGACCTTGCCAAGACTTTGAAAGATCTTACATCAACAGACACAGTTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000069218.5 ENSMUST00000213625.2 ENSMUST00000215255.2 |
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| CDS CAA 72 bp | ACATCCTCAAGGGGATTGAAGTACTTAAACAAGGCTTaGATGGGTTTTCACAGTCACATTGTTTCCTCTGTG | + |
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Preference number: 6 (lower is better) Translates to: TSSRGLKYLNKA*MGFHSHIVSSV Trigger: CACAGAGGAAACAATGTGACTGTGAAAACCCATCAAAGCCTTGTTTAAGTACTTCAATCCCCTTGAGGATGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000069218.5 ENSMUST00000213625.2 ENSMUST00000215255.2 |
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| CDS CAA 90 bp | TTCCTTTCCTGGTTAATAATATCCTGTTCAGTGACCAGAAATTCTTaGCAAAGGATCTGTGGGCCTGCTTCTGGAATCATATTTGCCAAA | + |
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Preference number: 6 (lower is better) Translates to: FLSWLIISCSVTRNS*QRICGPASGIIFAK Trigger: TTTGGCAAATATGATTCCAGAAGCAGGCCCACAGATCCTTTGCAAAGAATTTCTGGTCACTGAACAGGATATTATTAACCAGGAAAGGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000069218.5 ENSMUST00000213625.2 ENSMUST00000215255.2 |
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| CDS CAA 72 bp | TGGTTAATAATATCCTGTTCAGTGACCAGAAATTCTTaGCAAAGGATCTGTGGGCCTGCTTCTGGAATCATA | + |
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Preference number: 6 (lower is better) Translates to: WLIISCSVTRNS*QRICGPASGII Trigger: TATGATTCCAGAAGCAGGCCCACAGATCCTTTGCAAAGAATTTCTGGTCACTGAACAGGATATTATTAACCA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000069218.5 ENSMUST00000213625.2 ENSMUST00000215255.2 |
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