Pregenerated sensors for MBD2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024513Ensembl transcript IDs: ENSMUST00000074058.11, ENSMUST00000114946.4, ENSMUST00000127260.8
Found 88 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TCATGGAAGGAGGGACAGGGTTCCCAGCTATGCAGGCAATGGAGCTaGGCCGCAGCTGAGGCGGTCACCAGGTCAGGGGGTGAGGGTGGG | + |
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Preference number: 1 (lower is better) Translates to: SWKEGQGSQLCRQWS*AAAEAVTRSGGEGG Trigger: CCCACCCTCACCCCCTGACCTGGTGACCGCCTCAGCTGCGGCTCAGCTCCATTGCCTGCATAGCTGGGAACCCTGTCCCTCCTTCCATGA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000114946.4 |
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| 3UTR TCA 90 bp | AGCACAGAAGCAAGCAGATCCGGAGAGCGCATGCCATGTTGCGGGTaGAGCGCGAGCGAGGGAGCGAGCAAGTGGTCCAGAGCGGCTGGA | + |
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Preference number: 1 (lower is better) Translates to: STEASRSGERMPCCG*SASEGASKWSRAAG Trigger: TCCAGCCGCTCTGGACCACTTGCTCGCTCCCTCGCTCGCGCTTCACCCGCAACATGGCATGCGCTCTCCGGATCTGCTTGCTTCTGTGCT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114946.4 |
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| 3UTR GCA 90 bp | CAAGCACAGGAGACAGCACAGAAGCAAGCAGATCCGGAGAGCGCATaGCATGTTGCGGGTGAAGCGCGAGCGAGGGAGCGAGCAAGTGGT | + |
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Preference number: 1 (lower is better) Translates to: QAQETAQKQADPESA*HVAGEARARERASG Trigger: ACCACTTGCTCGCTCCCTCGCTCGCGCTTCACCCGCAACATGGCATGCGCTCTCCGGATCTGCTTGCTTCTGTGCTGTCTCCTGTGCTTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114946.4 |
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| 3UTR TCA 90 bp | GCCAAACAGCAGGGTTCTTTTCCACGGCAGCAGAGACTTGTCCTGTaGTGGGCGCAGAGCTTGTGTGTAAAGCACTGGCCACAGCAGACA | + |
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Preference number: 1 (lower is better) Translates to: AKQQGSFPRQQRLVL*WAQSLCVKHWPQQT Trigger: TGTCTGCTGTGGCCAGTGCTTTACACACAAGCTCTGCGCCCATCACAGGACAAGTCTCTGCTGCCGTGGAAAAGAACCCTGCTGTTTGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127260.8 |
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| 3UTR GCA 90 bp | TGGGGGAAACAAATATTTCACGTAAGTGCTACCTTTCCAGTAGACTaGACCTGGCCTCAAAGCTGCACTGCACCGGAAGGGCCCTGCTTG | + |
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Preference number: 1 (lower is better) Translates to: WGKQIFHVSATFPVD*TWPQSCTAPEGPCL Trigger: CAAGCAGGGCCCTTCCGGTGCAGTGCAGCTTTGAGGCCAGGTGCAGTCTACTGGAAAGGTAGCACTTACGTGAAATATTTGTTTCCCCCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000074058.11 |
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| 3UTR TCA 90 bp | ACAAAACGAAGAAAGTCCTTGCTCTCCTGGAGCTCACAGTCTAGCTaGAGCACAGCCACAAACACATGGTCATCATGGAAGGAGGGACAG | + |
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Preference number: 1 (lower is better) Translates to: TKRRKSLLSWSSQSS*STATNTWSSWKEGQ Trigger: CTGTCCCTCCTTCCATGATGACCATGTGTTTGTGGCTGTGCTTCAGCTAGACTGTGAGCTCCAGGAGAGCAAGGACTTTCTTCGTTTTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114946.4 |
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| 3UTR CCA 90 bp | AAACAAATATTTCACGTAAGTGCTACCTTTCCAGTAGACTGCACCTaGCCTCAAAGCTGCACTGCACCGGAAGGGCCCTGCTTGCTATTA | + |
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Preference number: 1 (lower is better) Translates to: KQIFHVSATFPVDCT*PQSCTAPEGPCLLL Trigger: TAATAGCAAGCAGGGCCCTTCCGGTGCAGTGCAGCTTTGAGGCCAGGTGCAGTCTACTGGAAAGGTAGCACTTACGTGAAATATTTGTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074058.11 |
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| 3UTR TCA 90 bp | TTCCTAATGTCTTCATCTGTAACAATGAAAGCTTTGCAGAGGGGTTaGGATGTGTTAAGCCAAACAGCAGGGTTCTTTTCCACGGCAGCA | + |
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Preference number: 1 (lower is better) Translates to: FLMSSSVTMKALQRG*DVLSQTAGFFSTAA Trigger: TGCTGCCGTGGAAAAGAACCCTGCTGTTTGGCTTAACACATCTCAACCCCTCTGCAAAGCTTTCATTGTTACAGATGAAGACATTAGGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000127260.8 |
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| 3UTR CAA 90 bp | AGGAGACAGCACAGAAGCAAGCAGATCCGGAGAGCGCATGCCATGTaGCGGGTGAAGCGCGAGCGAGGGAGCGAGCAAGTGGTCCAGAGC | + |
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Preference number: 2 (lower is better) Translates to: RRQHRSKQIRRAHAM*RVKRERGSEQVVQS Trigger: GCTCTGGACCACTTGCTCGCTCCCTCGCTCGCGCTTCACCCGCAACATGGCATGCGCTCTCCGGATCTGCTTGCTTCTGTGCTGTCTCCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114946.4 |
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| 3UTR-3UTR CCA 90 bp | CCATGTCAATGTCTACTTCCTCCGTGTCCGCAGCCCGGGACAGGATGTCGGCCACTCGTCATTGCTACCTaGACCGACTCCTTGAAGACC | + |
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Preference number: 2 (lower is better) Translates to: PCQCLLPPCPQPGTGCRPLVIAT*TDSLKT Trigger: GGTCTTCAAGGAGTCGGTCCAGGTAGCAATGACGAG...TGGCCGACATCCTGTCCCGGGCTGCGGACACGGAGGAAGTAGACATTGACATGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127260.8 |
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| 3UTR-3UTR CCA 90 bp | CCATGTCAATGTCTACTTCCTCCGTGTCCGCAGCCCGGGACAGGATGTCGGCCATTCTTGCGTACTTGTTaGACTCGCTCTTCCTGTTTC | + |
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Preference number: 2 (lower is better) Translates to: PCQCLLPPCPQPGTGCRPFLRTC*TRSSCF Trigger: GAAACAGGAAGAGCGAGTCCAACAAGTACGCAAGAA...TGGCCGACATCCTGTCCCGGGCTGCGGACACGGAGGAAGTAGACATTGACATGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127260.8 |
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| 3UTR-3UTR TCA 90 bp | TGTGTTAAGCCAAACAGCAGGGTTCTTTTCCACGGCAGCAGAGACTTGTCCTGTAAAGATGGCCCCTGTTaGATCTCTTGGGGACCAACA | + |
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Preference number: 2 (lower is better) Translates to: CVKPNSRVLFHGSRDLSCKDGPC*ISWGPT Trigger: TGTTGGTCCCCAAGAGATTCAACAGGGGCCATCTTT...ACAGGACAAGTCTCTGCTGCCGTGGAAAAGAACCCTGCTGTTTGGCTTAACACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000127260.8 |
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| 3UTR-3UTR CCA 90 bp | AGTATTTATTTAACAGGCTGCTACGTGCAAGGTTTGCGGCAACATACAAAACAAGTGGTCCAGAGCGGCTaGAGCAGAGAGGTGCACACA | + |
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Preference number: 2 (lower is better) Translates to: SIYLTGCYVQGLRQHTKQVVQSG*SREVHT Trigger: TGTGTGCACCTCTCTGCTCCAGCCGCTCTGGACCAC...TTGTTTTGTATGTTGCCGCAAACCTTGCACGTAGCAGCCTGTTAAATAAATACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114946.4 |
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| 3UTR-3UTR CCA 90 bp | TTGAGATGTGTTAAGCCAAACAGCAGGGTTCTTTTCCACGGCAGCAGAGACTTGTTCTCCCAGAAAAGATaGCCCCTGTTGAATCTCTTG | + |
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Preference number: 2 (lower is better) Translates to: LRCVKPNSRVLFHGSRDLFSQKR*PLLNLL Trigger: CAAGAGATTCAACAGGGGCCATCTTTTCTGGGAGAA...CAAGTCTCTGCTGCCGTGGAAAAGAACCCTGCTGTTTGGCTTAACACATCTCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000127260.8 |
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| 3UTR-3UTR CCA 90 bp | TTTCTTGCGTACTTGTTGGACTCGCTCTTCCTGTTTCCTAATGTCTTCATCTGTTTGTGTGTAAAGCACTaGCCACAGCAGACAGAAGGG | + |
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Preference number: 2 (lower is better) Translates to: FLAYLLDSLFLFPNVFICLCVKH*PQQTEG Trigger: CCCTTCTGTCTGCTGTGGCCAGTGCTTTACACACAA...ACAGATGAAGACATTAGGAAACAGGAAGAGCGAGTCCAACAAGTACGCAAGAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127260.8 |
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| 3UTR-3UTR CCA 90 bp | AAACTGTGGGGGAAACAAATATTTCACGTAAGTGCTACCTTTCCAGTAGACTGCCTAGCAATTTGCTCTTaGGGAAGGTCAGTCGAAAGT | + |
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Preference number: 2 (lower is better) Translates to: KLWGKQIFHVSATFPVDCLAICS*GRSVES Trigger: ACTTTCGACTGACCTTCCCCAAGAGCAAATTGCTAG...GCAGTCTACTGGAAAGGTAGCACTTACGTGAAATATTTGTTTCCCCCACAGTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000074058.11 |
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| 3UTR-3UTR TCA 90 bp | TTGAATAAGCATTTATTACCACAACACCCTTCTGGAATCAGACGGAAAGAAAAGAGCTCACAGTCTAGCTaGAGCACAGCCACAAACACA | + |
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Preference number: 2 (lower is better) Translates to: LNKHLLPQHPSGIRRKEKSSQSS*STATNT Trigger: TGTGTTTGTGGCTGTGCTTCAGCTAGACTGTGAGCT...CTTTTCTTTCCGTCTGATTCCAGAAGGGTGTTGTGGTAATAAATGCTTATTCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114946.4 |
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| 3UTR-3UTR CCA 90 bp | TATTACCACAACACCCTTCTGGAATCAGACGGAAAGAAAAGCAGTATTTATTTAAACACATGGTCATCATaGAAGGAGGGACAGGGTTCC | + |
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Preference number: 2 (lower is better) Translates to: YYHNTLLESDGKKSSIYLNTWSS*KEGQGS Trigger: GGAACCCTGTCCCTCCTTCCATGATGACCATGTGTT...TAAATAAATACTGCTTTTCTTTCCGTCTGATTCCAGAAGGGTGTTGTGGTAATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114946.4 |
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| 3UTR-3UTR GCA 90 bp | ATATTAAAACTGTGGGGGAAACAAATATTTCACGTAAGTGCTACCTTTCCAGTACGGAAGGGCCCTGCTTaGTATTATAAAAGACTCATT | + |
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Preference number: 2 (lower is better) Translates to: ILKLWGKQIFHVSATFPVRKGPA*YYKRLI Trigger: AATGAGTCTTTTATAATAGCAAGCAGGGCCCTTCCG...TACTGGAAAGGTAGCACTTACGTGAAATATTTGTTTCCCCCACAGTTTTAATAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000074058.11 |
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| 3UTR-3UTR GCA 90 bp | TTGGGAAACTTATTTGGTACTCCTGATCTGTTTATATTAAAACTGTGGGGGAAAAATATTTCACGTAAGTaGTACCTTTCCAGTAGACTG | + |
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Preference number: 2 (lower is better) Translates to: LGNLFGTPDLFILKLWGKNISRK*YLSSRL Trigger: CAGTCTACTGGAAAGGTAGCACTTACGTGAAATATT...TTTCCCCCACAGTTTTAATATAAACAGATCAGGAGTACCAAATAAGTTTCCCAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000074058.11 |
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| 3UTR TCA 72 bp | GCAAGCAGATCCGGAGAGCGCATGCCATGTTGCGGGTaGAGCGCGAGCGAGGGAGCGAGCAAGTGGTCCAGA | + |
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Preference number: 3 (lower is better) Translates to: ASRSGERMPCCG*SASEGASKWSR Trigger: TCTGGACCACTTGCTCGCTCCCTCGCTCGCGCTTCACCCGCAACATGGCATGCGCTCTCCGGATCTGCTTGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114946.4 |
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| 3UTR-3UTR CAA 90 bp | GCTGAAGCACAGCCACAAACACATGGTCATCATGGAAGGAGGGACAGGGTTCCCAGAGCGCATGCCATGTaGCGGGTGAAGCGCGAGCGA | + |
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Preference number: 3 (lower is better) Translates to: AEAQPQTHGHHGRRDRVPRAHAM*RVKRER Trigger: TCGCTCGCGCTTCACCCGCAACATGGCATGCGCTCT...GGGAACCCTGTCCCTCCTTCCATGATGACCATGTGTTTGTGGCTGTGCTTCAGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114946.4 |
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| 3UTR CCA 72 bp | TTTCACGTAAGTGCTACCTTTCCAGTAGACTGCACCTaGCCTCAAAGCTGCACTGCACCGGAAGGGCCCTGC | + |
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Preference number: 3 (lower is better) Translates to: FHVSATFPVDCT*PQSCTAPEGPC Trigger: GCAGGGCCCTTCCGGTGCAGTGCAGCTTTGAGGCCAGGTGCAGTCTACTGGAAAGGTAGCACTTACGTGAAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074058.11 |
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| 3UTR TCA 72 bp | CAGGGTTCTTTTCCACGGCAGCAGAGACTTGTCCTGTaGTGGGCGCAGAGCTTGTGTGTAAAGCACTGGCCA | + |
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Preference number: 3 (lower is better) Translates to: QGSFPRQQRLVL*WAQSLCVKHWP Trigger: TGGCCAGTGCTTTACACACAAGCTCTGCGCCCATCACAGGACAAGTCTCTGCTGCCGTGGAAAAGAACCCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127260.8 |
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| 3UTR-3UTR CAA 90 bp | GCAGCAGAGACTTGTCCTGTGATGGGCGCAGAGCTTGTGTGTAAAGCACTGGCCCCCCTGTTGAATCTCTaGGGGACCAACAGTAAAGCA | + |
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Preference number: 3 (lower is better) Translates to: AAETCPVMGAELVCKALAPLLNL*GTNSKA Trigger: TGCTTTACTGTTGGTCCCCAAGAGATTCAACAGGGG...GGCCAGTGCTTTACACACAAGCTCTGCGCCCATCACAGGACAAGTCTCTGCTGC 54% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000127260.8 |
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| 3UTR-3UTR CAA 90 bp | TTGAGATGTGTTAAGCCAAACAGCAGGGTTCTTTTCCACGGCAGCAGAGACTTGAGAAGGGTCTCGTCATaGCTACCTGGACCGACTCCT | + |
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Preference number: 3 (lower is better) Translates to: LRCVKPNSRVLFHGSRDLRRVSS*LPGPTP Trigger: AGGAGTCGGTCCAGGTAGCAATGACGAGACCCTTCT...CAAGTCTCTGCTGCCGTGGAAAAGAACCCTGCTGTTTGGCTTAACACATCTCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127260.8 |
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| 3UTR GCA 72 bp | CAAATATTTCACGTAAGTGCTACCTTTCCAGTAGACTaGACCTGGCCTCAAAGCTGCACTGCACCGGAAGGG | + |
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Preference number: 3 (lower is better) Translates to: QIFHVSATFPVD*TWPQSCTAPEG Trigger: CCCTTCCGGTGCAGTGCAGCTTTGAGGCCAGGTGCAGTCTACTGGAAAGGTAGCACTTACGTGAAATATTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074058.11 |
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| 3UTR-3UTR CAA 90 bp | CTCCTCCAGTTTCTTGCGTACTTGTTGGACTCGCTCTTCCTGTTTCCTAATGTCAGCTTTGCAGAGGGGTaGAGATGTGTTAAGCCAAAC | + |
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Preference number: 3 (lower is better) Translates to: LLQFLAYLLDSLFLFPNVSFAEG*RCVKPN Trigger: GTTTGGCTTAACACATCTCAACCCCTCTGCAAAGCT...GACATTAGGAAACAGGAAGAGCGAGTCCAACAAGTACGCAAGAAACTGGAGGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127260.8 |
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| 3UTR-3UTR CAA 90 bp | CGGAAAGAAAAGCAGTATTTATTTAACAGGCTGCTACGTGCAAGGTTTGCGGCAAAACGAAGAAAGTCCTaGCTCTCCTGGAGCTCACAG | + |
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Preference number: 3 (lower is better) Translates to: RKEKQYLFNRLLRARFAAKRRKS*LSWSSQ Trigger: CTGTGAGCTCCAGGAGAGCAAGGACTTTCTTCGTTT...TGCCGCAAACCTTGCACGTAGCAGCCTGTTAAATAAATACTGCTTTTCTTTCCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114946.4 |
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| 3UTR GCA 72 bp | GGCCTCAAAGCTGCACTGCACCGGAAGGGCCCTGCTTaGTATTATAAAAGACTCATTTTAAGTCCTAGGATT | + |
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Preference number: 3 (lower is better) Translates to: GLKAALHRKGPA*YYKRLILSPRI Trigger: AATCCTAGGACTTAAAATGAGTCTTTTATAATAGCAAGCAGGGCCCTTCCGGTGCAGTGCAGCTTTGAGGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074058.11 |
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| 3UTR GCA 72 bp | ATTAAAACTGTGGGGGAAACAAATATTTCACGTAAGTaGTACCTTTCCAGTAGACTGCACCTGGCCTCAAAG | + |
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Preference number: 3 (lower is better) Translates to: IKTVGETNISRK*YLSSRLHLASK Trigger: CTTTGAGGCCAGGTGCAGTCTACTGGAAAGGTAGCACTTACGTGAAATATTTGTTTCCCCCACAGTTTTAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000074058.11 |
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| 3UTR-3UTR CAA 90 bp | TTGGGAAACTTATTTGGTACTCCTGATCTGTTTATATTAAAACTGTGGGGGAAATCTAGCAATTTGCTCTaGGGGAAGGTCAGTCGAAAG | + |
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Preference number: 3 (lower is better) Translates to: LGNLFGTPDLFILKLWGKSSNLL*GKVSRK Trigger: CTTTCGACTGACCTTCCCCAAGAGCAAATTGCTAGA...TTTCCCCCACAGTTTTAATATAAACAGATCAGGAGTACCAAATAAGTTTCCCAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000074058.11 |
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| 3UTR GCA 72 bp | TCAGACGGAAAGAAAAGCAGTATTTATTTAACAGGCTaGTACGTGCAAGGTTTGCGGCAACATACAAAACAA | + |
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Preference number: 3 (lower is better) Translates to: SDGKKSSIYLTG*YVQGLRQHTKQ Trigger: TTGTTTTGTATGTTGCCGCAAACCTTGCACGTAGCAGCCTGTTAAATAAATACTGCTTTTCTTTCCGTCTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114946.4 |
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| 3UTR CAA 72 bp | CACAGAAGCAAGCAGATCCGGAGAGCGCATGCCATGTaGCGGGTGAAGCGCGAGCGAGGGAGCGAGCAAGTG | + |
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Preference number: 4 (lower is better) Translates to: HRSKQIRRAHAM*RVKRERGSEQV Trigger: CACTTGCTCGCTCCCTCGCTCGCGCTTCACCCGCAACATGGCATGCGCTCTCCGGATCTGCTTGCTTCTGTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114946.4 |
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| CDS-3UTR TCA 90 bp | AGGGTTCTTTTCCACGGCAGCAGAGACTTGTCCTGTGATGGGCGCAGAGCTTGTCATCCGCTGGGGGTCTaGCTTCACCTTATTGCTCGG | + |
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Preference number: 4 (lower is better) Translates to: RVLFHGSRDLSCDGRRACHPLGV*LHLIAR Trigger: CCGAGCAATAAGGTGAAGTCAGACCCCCAGCGGATG...ACAAGCTCTGCGCCCATCACAGGACAAGTCTCTGCTGCCGTGGAAAAGAACCCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000127260.8 |
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| CDS-3UTR TCA 90 bp | AGCCACAAACACATGGTCATCATGGAAGGAGGGACAGGGTTCCCAGCTATGCAGCGCTCTTGCCAGCACTaGGCCCTGATTTTCGGATCA | + |
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Preference number: 4 (lower is better) Translates to: SHKHMVIMEGGTGFPAMQRSCQH*ALIFGS Trigger: TGATCCGAAAATCAGGGCTCAGTGCTGGCAAGAGCG...CTGCATAGCTGGGAACCCTGTCCCTCCTTCCATGATGACCATGTGTTTGTGGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114946.4 |
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| CDS-3UTR GCA 90 bp | AGCGAGGGAGCGAGCAAGTGGTCCAGAGCGGCTGGAGCAGAGAGGTGCACACAATCATTCCGGAGTCTCTaGTTGTTCTTCTGTAATTTA | + |
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Preference number: 4 (lower is better) Translates to: SEGASKWSRAAGAERCTQSFRSL*LFFCNL Trigger: TAAATTACAGAAGAACAAGCAGAGACTCCGGAATGA...TTGTGTGCACCTCTCTGCTCCAGCCGCTCTGGACCACTTGCTCGCTCCCTCGCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114946.4 |
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| CDS-3UTR TCA 90 bp | ATATTTCACGTAAGTGCTACCTTTCCAGTAGACTGCACCTGGCCTCAAAGCTGCCGCTCTTGCCAGCACTaGGCCCTGATTTTCGGATCA | + |
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Preference number: 4 (lower is better) Translates to: IFHVSATFPVDCTWPQSCRSCQH*ALIFGS Trigger: TGATCCGAAAATCAGGGCTCAGTGCTGGCAAGAGCG...GCAGCTTTGAGGCCAGGTGCAGTCTACTGGAAAGGTAGCACTTACGTGAAATAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074058.11 |
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| CDS-3UTR CCA 90 bp | TGTGTTAAGCCAAACAGCAGGGTTCTTTTCCACGGCAGCAGAGACTTGTCCTGTCTGGCTCACCTGACGTaGTTGTTCATTCATCCGCTG | + |
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Preference number: 4 (lower is better) Translates to: CVKPNSRVLFHGSRDLSCLAHLT*LFIHPL Trigger: CAGCGGATGAATGAACAACCACGTCAGGTGAGCCAG...ACAGGACAAGTCTCTGCTGCCGTGGAAAAGAACCCTGCTGTTTGGCTTAACACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127260.8 |
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| CDS-3UTR CCA 90 bp | TGTCCTGTGATGGGCGCAGAGCTTGTGTGTAAAGCACTGGCCACAGCAGACAGAGATGCTGATCCAATGTaGCTCCACACATCTTCTGTT | + |
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Preference number: 4 (lower is better) Translates to: CPVMGAELVCKALATADRDADPM*LHTSSV Trigger: AACAGAAGATGTGTGGAGCCACATTGGATCAGCATC...TCTGTCTGCTGTGGCCAGTGCTTTACACACAAGCTCTGCGCCCATCACAGGACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127260.8 |
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| CDS-3UTR TCA 90 bp | GAAACAAATATTTCACGTAAGTGCTACCTTTCCAGTAGACTGCACCTGGCCTCACATCCGCTGGGGGTCTaGCTTCACCTTATTGCTCGG | + |
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Preference number: 4 (lower is better) Translates to: ETNISRKCYLSSRLHLASHPLGV*LHLIAR Trigger: CCGAGCAATAAGGTGAAGTCAGACCCCCAGCGGATG...TGAGGCCAGGTGCAGTCTACTGGAAAGGTAGCACTTACGTGAAATATTTGTTTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000074058.11 |
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| CDS-3UTR CCA 90 bp | GCAGAGCTTGTGTGTAAAGCACTGGCCACAGCAGACAGAAGGGTCTCGTCATTGTGTTGTGTTCAGGTCTaGTTTACCCTTGTTCTGATT | + |
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Preference number: 4 (lower is better) Translates to: AELVCKALATADRRVSSLCCVQV*FTLVLI Trigger: AATCAGAACAAGGGTAAACCAGACCTGAACACAACA...CAATGACGAGACCCTTCTGTCTGCTGTGGCCAGTGCTTTACACACAAGCTCTGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127260.8 |
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| CDS-3UTR CCA 90 bp | GAAACAAATATTTCACGTAAGTGCTACCTTTCCAGTAGACTGCACCTGGCCTCATTGTGTGTAAAGCACTaGCCACAGCAGACAGAAGGG | + |
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Preference number: 4 (lower is better) Translates to: ETNISRKCYLSSRLHLASLCVKH*PQQTEG Trigger: CCCTTCTGTCTGCTGTGGCCAGTGCTTTACACACAA...TGAGGCCAGGTGCAGTCTACTGGAAAGGTAGCACTTACGTGAAATATTTGTTTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074058.11 |
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| CDS-3UTR GCA 90 bp | AAACTGTGGGGGAAACAAATATTTCACGTAAGTGCTACCTTTCCAGTAGACTGCCCTCCTCCAGTTTCTTaGGTACTTGTTGGACTCGCT | + |
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Preference number: 4 (lower is better) Translates to: KLWGKQIFHVSATFPVDCPPPVS*VLVGLA Trigger: AGCGAGTCCAACAAGTACGCAAGAAACTGGAGGAGG...GCAGTCTACTGGAAAGGTAGCACTTACGTGAAATATTTGTTTCCCCCACAGTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000074058.11 |
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| CDS-3UTR TCA 90 bp | TATTTATTTAACAGGCTGCTACGTGCAAGGTTTGCGGCAACATACAAAACAAAAGCCAGCACTGAGCCCTaGTTTTCGGATCACTTCCTC | + |
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Preference number: 4 (lower is better) Translates to: YLFNRLLRARFAATYKTKASTEP*FSDHFL Trigger: GAGGAAGTGATCCGAAAATCAGGGCTCAGTGCTGGC...TTTTGTTTTGTATGTTGCCGCAAACCTTGCACGTAGCAGCCTGTTAAATAAATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000114946.4 |
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| CDS-3UTR CCA 90 bp | TGGTTAGTGCTATTAAAAAGCTATGTGCTCAGGTACACTTTTTCTTACAGGCGACTCGTCATTGCTACCTaGACCGACTCCTTGAAGACC | + |
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Preference number: 4 (lower is better) Translates to: WLVLLKSYVLRYTFSYRRLVIAT*TDSLKT Trigger: GGTCTTCAAGGAGTCGGTCCAGGTAGCAATGACGAG...TCGCCTGTAAGAAAAAGTGTACCTGAGCACATAGCTTTTTAATAGCACTAACCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000074058.11 |
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| CDS-3UTR TCA 90 bp | ATATTAAAACTGTGGGGGAAACAAATATTTCACGTAAGTGCTACCTTTCCAGTAGCCAGCACTGAGCCCTaGTTTTCGGATCACTTCCTC | + |
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Preference number: 4 (lower is better) Translates to: ILKLWGKQIFHVSATFPVASTEP*FSDHFL Trigger: GAGGAAGTGATCCGAAAATCAGGGCTCAGTGCTGGC...TACTGGAAAGGTAGCACTTACGTGAAATATTTGTTTCCCCCACAGTTTTAATAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000074058.11 |
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| CDS-3UTR TCA 90 bp | AAGGCATTGGTTAGTGCTATTAAAAAGCTATGTGCTCAGGTACACTTTTTCTTACAGAGACTTGTCCTGTaGTGGGCGCAGAGCTTGTGT | + |
|
Preference number: 4 (lower is better) Translates to: KALVSAIKKLCAQVHFFLQRLVL*WAQSLC Trigger: ACACAAGCTCTGCGCCCATCACAGGACAAGTCTCTG...TAAGAAAAAGTGTACCTGAGCACATAGCTTTTTAATAGCACTAACCAATGCCTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000074058.11 |
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| CDS-3UTR TCA 90 bp | CTATTAAAAAGCTATGTGCTCAGGTACACTTTTTCTTACAGGCGAAACCCAGTGGCTTTGCAGAGGGGTTaGGATGTGTTAAGCCAAACA | + |
|
Preference number: 4 (lower is better) Translates to: LLKSYVLRYTFSYRRNPVALQRG*DVLSQT Trigger: TGTTTGGCTTAACACATCTCAACCCCTCTGCAAAGC...CACTGGGTTTCGCCTGTAAGAAAAAGTGTACCTGAGCACATAGCTTTTTAATAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000074058.11 |
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| 3UTR CAA 72 bp | GTCTTCATCTGTAACAATGAAAGCTTTGCAGAGGGGTaGAGATGTGTTAAGCCAAACAGCAGGGTTCTTTTC | + |
|
Preference number: 4 (lower is better) Translates to: VFICNNESFAEG*RCVKPNSRVLF Trigger: GAAAAGAACCCTGCTGTTTGGCTTAACACATCTCAACCCCTCTGCAAAGCTTTCATTGTTACAGATGAAGAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000127260.8 |
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| CDS-3UTR TCA 90 bp | CGGAAGGGCCCTGCTTGCTATTATAAAAGACTCATTTTAAGTCCTAGGATTCAATTCTCCCAGAAAAGCTaGCGTGGTTGTTCATTCATC | + |
|
Preference number: 4 (lower is better) Translates to: RKGPACYYKRLILSPRIQFSQKS*RGCSFI Trigger: GATGAATGAACAACCACGTCAGCTTTTCTGGGAGAA...TTGAATCCTAGGACTTAAAATGAGTCTTTTATAATAGCAAGCAGGGCCCTTCCG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000074058.11 |
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| CDS-3UTR CCA 90 bp | CGGAAAGAAAAGCAGTATTTATTTAACAGGCTGCTACGTGCAAGGTTTGCGGCAGAACTTCTTACCACTTaGACTGAAGTAGTAGACATC | + |
|
Preference number: 4 (lower is better) Translates to: RKEKQYLFNRLLRARFAAELLTT*TEVVDI Trigger: GATGTCTACTACTTCAGTCCAAGTGGTAAGAAGTTC...TGCCGCAAACCTTGCACGTAGCAGCCTGTTAAATAAATACTGCTTTTCTTTCCG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114946.4 |
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| CDS-3UTR CCA 90 bp | TTGGGAAACTTATTTGGTACTCCTGATCTGTTTATATTAAAACTGTGGGGGAAATGTTCATTCATCCGCTaGGGGTCTGACTTCACCTTA | + |
|
Preference number: 4 (lower is better) Translates to: LGNLFGTPDLFILKLWGKCSFIR*GSDFTL Trigger: TAAGGTGAAGTCAGACCCCCAGCGGATGAATGAACA...TTTCCCCCACAGTTTTAATATAAACAGATCAGGAGTACCAAATAAGTTTCCCAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000074058.11 |
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| CDS-3UTR TCA 90 bp | GGAAACTTATTTGGTACTCCTGATCTGTTTATATTAAAACTGTGGGGGAAACAATCTTACCACTTGGACTaGAGTAGTAGACATCGCTCT | + |
|
Preference number: 4 (lower is better) Translates to: GNLFGTPDLFILKLWGKQSYHLD*SSRHRS Trigger: AGAGCGATGTCTACTACTTCAGTCCAAGTGGTAAGA...TTGTTTCCCCCACAGTTTTAATATAAACAGATCAGGAGTACCAAATAAGTTTCC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000074058.11 |
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| CDS-3UTR CCA 90 bp | TTGGGAAACTTATTTGGTACTCCTGATCTGTTTATATTAAAACTGTGGGGGAAATTCTTGCGTACTTGTTaGACTCGCTCTTCCTGTTTC | + |
|
Preference number: 4 (lower is better) Translates to: LGNLFGTPDLFILKLWGKFLRTC*TRSSCF Trigger: GAAACAGGAAGAGCGAGTCCAACAAGTACGCAAGAA...TTTCCCCCACAGTTTTAATATAAACAGATCAGGAGTACCAAATAAGTTTCCCAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000074058.11 |
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| CDS-3UTR CCA 90 bp | TGTTTTAATTCTGTTTCTAGCAATTTGCTCTTGGGGAAGGTCAGTCGAAAGTTAGAACTTCTTACCACTTaGACTGAAGTAGTAGACATC | + |
|
Preference number: 4 (lower is better) Translates to: CFNSVSSNLLLGKVSRKLELLTT*TEVVDI Trigger: GATGTCTACTACTTCAGTCCAAGTGGTAAGAAGTTC...TAACTTTCGACTGACCTTCCCCAAGAGCAAATTGCTAGAAACAGAATTAAAACA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074058.11 |
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| CDS-3UTR CCA 90 bp | AAGGCATTGGTTAGTGCTATTAAAAAGCTATGTGCTCAGGTACACTTTTTCTTATGTTGTGTTCAGGTCTaGTTTACCCTTGTTCTGATT | + |
|
Preference number: 4 (lower is better) Translates to: KALVSAIKKLCAQVHFFLCCVQV*FTLVLI Trigger: AATCAGAACAAGGGTAAACCAGACCTGAACACAACA...TAAGAAAAAGTGTACCTGAGCACATAGCTTTTTAATAGCACTAACCAATGCCTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000074058.11 |
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| CDS-3UTR GCA 90 bp | ATATTAAAACTGTGGGGGAAACAAATATTTCACGTAAGTGCTACCTTTCCAGTATCATTCCGGAGTCTCTaGTTGTTCTTCTGTAATTTA | + |
|
Preference number: 4 (lower is better) Translates to: ILKLWGKQIFHVSATFPVSFRSL*LFFCNL Trigger: TAAATTACAGAAGAACAAGCAGAGACTCCGGAATGA...TACTGGAAAGGTAGCACTTACGTGAAATATTTGTTTCCCCCACAGTTTTAATAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000074058.11 |
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| CDS-3UTR CAA 90 bp | TGTGTTAAGCCAAACAGCAGGGTTCTTTTCCACGGCAGCAGAGACTTGTCCTGTGCTCACCTGACGTGGTaGTTCATTCATCCGCTGGGG | + |
|
Preference number: 5 (lower is better) Translates to: CVKPNSRVLFHGSRDLSCAHLTW*FIHPLG Trigger: CCCCAGCGGATGAATGAACAACCACGTCAGGTGAGC...ACAGGACAAGTCTCTGCTGCCGTGGAAAAGAACCCTGCTGTTTGGCTTAACACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127260.8 |
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| CDS TCA 90 bp | TTCCTGGCTCACCTGACGTGGTTGTTCATTCATCCGCTGGGGGTCTaGCTTCACCTTATTGCTCGGGTGGTTCGTGAATTTGGTTACTGG | + |
|
Preference number: 5 (lower is better) Translates to: FLAHLTWLFIHPLGV*LHLIARVVREFGYW Trigger: CCAGTAACCAAATTCACGAACCACCCGAGCAATAAGGTGAAGTCAGACCCCCAGCGGATGAATGAACAACCACGTCAGGTGAGCCAGGAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000127260.8 |
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| CDS TCA 90 bp | CTCCCAGAAAAGCTGACGTGGTTGTTCATTCATCCGCTGGGGGTCTaGCTTCACCTTATTGCTCGGGTGGTTCGTGAATTTGGTTACTGG | + |
|
Preference number: 5 (lower is better) Translates to: LPEKLTWLFIHPLGV*LHLIARVVREFGYW Trigger: CCAGTAACCAAATTCACGAACCACCCGAGCAATAAGGTGAAGTCAGACCCCCAGCGGATGAATGAACAACCACGTCAGCTTTTCTGGGAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000074058.11 |
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| CDS-3UTR CAA 90 bp | AGCCACAAACACATGGTCATCATGGAAGGAGGGACAGGGTTCCCAGCTATGCAGCATTTCCCAGGTATCTaGCCAGCTGAGGTTTACTTC | + |
|
Preference number: 5 (lower is better) Translates to: SHKHMVIMEGGTGFPAMQHFPGI*PAEVYF Trigger: GAAGTAAACCTCAGCTGGCAAGATACCTGGGAAATG...CTGCATAGCTGGGAACCCTGTCCCTCCTTCCATGATGACCATGTGTTTGTGGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114946.4 |
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| CDS-3UTR CAA 90 bp | AGGGTTCTTTTCCACGGCAGCAGAGACTTGTCCTGTGATGGGCGCAGAGCTTGTTTGGTTACTGGTTGCTaGAAAATTGATGCAGTTTGT | + |
|
Preference number: 5 (lower is better) Translates to: RVLFHGSRDLSCDGRRACLVTGC*KIDAVC Trigger: ACAAACTGCATCAATTTTCAAGCAACCAGTAACCAA...ACAAGCTCTGCGCCCATCACAGGACAAGTCTCTGCTGCCGTGGAAAAGAACCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000127260.8 |
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| CDS-3UTR CAA 90 bp | ATATTTCACGTAAGTGCTACCTTTCCAGTAGACTGCACCTGGCCTCAAAGCTGCAGCTTTGCAGAGGGGTaGAGATGTGTTAAGCCAAAC | + |
|
Preference number: 5 (lower is better) Translates to: IFHVSATFPVDCTWPQSCSFAEG*RCVKPN Trigger: GTTTGGCTTAACACATCTCAACCCCTCTGCAAAGCT...GCAGCTTTGAGGCCAGGTGCAGTCTACTGGAAAGGTAGCACTTACGTGAAATAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074058.11 |
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| CDS CCA 90 bp | TGTTCATTCATCCGCTGGGGGTCTGACTTCACCTTATTGCTCGGGTaGTTCGTGAATTTGGTTACTGGTTGCTTGAAAATTGATGCAGTT | + |
|
Preference number: 5 (lower is better) Translates to: CSFIRWGSDFTLLLG*FVNLVTGCLKIDAV Trigger: AACTGCATCAATTTTCAAGCAACCAGTAACCAAATTCACGAACCACCCGAGCAATAAGGTGAAGTCAGACCCCCAGCGGATGAATGAACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000074058.11 ENSMUST00000127260.8 |
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| CDS GCA 90 bp | CCTGAAGTCAAAACTGCTAAGGTCAACAGCATTTCCCAGGTATCTTaGCAGCTGAGGTTTACTTCTGAACTTCTTACCACTTGGACTGAA | + |
|
Preference number: 5 (lower is better) Translates to: PEVKTAKVNSISQVS*QLRFTSELLTTWTE Trigger: TTCAGTCCAAGTGGTAAGAAGTTCAGAAGTAAACCTCAGCTGGCAAGATACCTGGGAAATGCTGTTGACCTTAGCAGTTTTGACTTCAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074058.11 ENSMUST00000114946.4 |
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| CDS-3UTR CAA 90 bp | TTAAAACTGTGGGGGAAACAAATATTTCACGTAAGTGCTACCTTTCCAGTAGACGAAAAGCTGACGTGGTaGTTCATTCATCCGCTGGGG | + |
|
Preference number: 5 (lower is better) Translates to: LKLWGKQIFHVSATFPVDEKLTW*FIHPLG Trigger: CCCCAGCGGATGAATGAACAACCACGTCAGCTTTTC...GTCTACTGGAAAGGTAGCACTTACGTGAAATATTTGTTTCCCCCACAGTTTTAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000074058.11 |
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| CDS-3UTR CAA 90 bp | GCTCAGGTACACTTTTTCTTACAGGCGAAACCCAGTGGAAATGTTTTAATTCTGCAGTTTCTTGCGTACTaGTTGGACTCGCTCTTCCTG | + |
|
Preference number: 5 (lower is better) Translates to: AQVHFFLQAKPSGNVLILQFLAY*LDSLFL Trigger: CAGGAAGAGCGAGTCCAACAAGTACGCAAGAAACTG...CAGAATTAAAACATTTCCACTGGGTTTCGCCTGTAAGAAAAAGTGTACCTGAGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000074058.11 |
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| CDS-3UTR CAA 90 bp | ATATTTCACGTAAGTGCTACCTTTCCAGTAGACTGCACCTGGCCTCAAAGCTGCTTGGTTACTGGTTGCTaGAAAATTGATGCAGTTTGT | + |
|
Preference number: 5 (lower is better) Translates to: IFHVSATFPVDCTWPQSCLVTGC*KIDAVC Trigger: ACAAACTGCATCAATTTTCAAGCAACCAGTAACCAA...GCAGCTTTGAGGCCAGGTGCAGTCTACTGGAAAGGTAGCACTTACGTGAAATAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074058.11 |
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| CDS-3UTR CAA 90 bp | AAGGCATTGGTTAGTGCTATTAAAAAGCTATGTGCTCAGGTACACTTTTTCTTAAGAAGGGTCTCGTCATaGCTACCTGGACCGACTCCT | + |
|
Preference number: 5 (lower is better) Translates to: KALVSAIKKLCAQVHFFLRRVSS*LPGPTP Trigger: AGGAGTCGGTCCAGGTAGCAATGACGAGACCCTTCT...TAAGAAAAAGTGTACCTGAGCACATAGCTTTTTAATAGCACTAACCAATGCCTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000074058.11 |
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| CDS GCA 90 bp | GACTTCACCTTATTGCTCGGGTGGTTCGTGAATTTGGTTACTGGTTaGTTGAAAATTGATGCAGTTTGTCTAATTGGCAATGTTGTGTTC | + |
|
Preference number: 5 (lower is better) Translates to: DFTLLLGWFVNLVTG*LKIDAVCLIGNVVF Trigger: GAACACAACATTGCCAATTAGACAAACTGCATCAATTTTCAAGCAACCAGTAACCAAATTCACGAACCACCCGAGCAATAAGGTGAAGTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074058.11 ENSMUST00000127260.8 |
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| CDS-3UTR CAA 90 bp | TGTTTTAATTCTGTTTCTAGCAATTTGCTCTTGGGGAAGGTCAGTCGAAAGTTACATTTCCCAGGTATCTaGCCAGCTGAGGTTTACTTC | + |
|
Preference number: 5 (lower is better) Translates to: CFNSVSSNLLLGKVSRKLHFPGI*PAEVYF Trigger: GAAGTAAACCTCAGCTGGCAAGATACCTGGGAAATG...TAACTTTCGACTGACCTTCCCCAAGAGCAAATTGCTAGAAACAGAATTAAAACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074058.11 |
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| CDS-3UTR CAA 90 bp | TTAAAACTGTGGGGGAAACAAATATTTCACGTAAGTGCTACCTTTCCAGTAGACTTACTAGGCATCATCTaGCCGGTCCTGAAGTCAAAA | + |
|
Preference number: 5 (lower is better) Translates to: LKLWGKQIFHVSATFPVDLLGII*PVLKSK Trigger: TTTTGACTTCAGGACCGGCAAGATGATGCCTAGTAA...GTCTACTGGAAAGGTAGCACTTACGTGAAATATTTGTTTCCCCCACAGTTTTAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000074058.11 |
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| CDS-3UTR CAA 90 bp | AAACTGTGGGGGAAACAAATATTTCACGTAAGTGCTACCTTTCCAGTAGACTGCTTCCGGAGTCTCTGCTaGTTCTTCTGTAATTTACTA | + |
|
Preference number: 5 (lower is better) Translates to: KLWGKQIFHVSATFPVDCFRSLC*FFCNLL Trigger: TAGTAAATTACAGAAGAACAAGCAGAGACTCCGGAA...GCAGTCTACTGGAAAGGTAGCACTTACGTGAAATATTTGTTTCCCCCACAGTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000074058.11 |
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| CDS-3UTR CAA 90 bp | TTGAATAAGCATTTATTACCACAACACCCTTCTGGAATCAGACGGAAAGAAAAGTTACTAGGCATCATCTaGCCGGTCCTGAAGTCAAAA | + |
|
Preference number: 5 (lower is better) Translates to: LNKHLLPQHPSGIRRKEKLLGII*PVLKSK Trigger: TTTTGACTTCAGGACCGGCAAGATGATGCCTAGTAA...CTTTTCTTTCCGTCTGATTCCAGAAGGGTGTTGTGGTAATAAATGCTTATTCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114946.4 |
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| CDS-3UTR CAA 90 bp | GGAAACTTATTTGGTACTCCTGATCTGTTTATATTAAAACTGTGGGGGAAACAATTTCTTGCGTACTTGTaGGACTCGCTCTTCCTGTTT | + |
|
Preference number: 5 (lower is better) Translates to: GNLFGTPDLFILKLWGKQFLAYL*DSLFLF Trigger: AAACAGGAAGAGCGAGTCCAACAAGTACGCAAGAAA...TTGTTTCCCCCACAGTTTTAATATAAACAGATCAGGAGTACCAAATAAGTTTCC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000074058.11 |
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| CDS TCA 72 bp | GAAGTAGTAGACATCGCTCTTGCCAGCACTGAGCCCTaGTTTTCGGATCACTTCCTCCTTCTTCCATCCGGG | + |
|
Preference number: 6 (lower is better) Translates to: EVVDIALASTEP*FSDHFLLLPSG Trigger: CCCGGATGGAAGAAGGAGGAAGTGATCCGAAAATCAGGGCTCAGTGCTGGCAAGAGCGATGTCTACTACTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074058.11 ENSMUST00000114946.4 |
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| CDS TCA 72 bp | CACCTGACGTGGTTGTTCATTCATCCGCTGGGGGTCTaGCTTCACCTTATTGCTCGGGTGGTTCGTGAATTT | + |
|
Preference number: 6 (lower is better) Translates to: HLTWLFIHPLGV*LHLIARVVREF Trigger: AAATTCACGAACCACCCGAGCAATAAGGTGAAGTCAGACCCCCAGCGGATGAATGAACAACCACGTCAGGTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000127260.8 |
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| CDS TCA 72 bp | GGCAATGTTGTGTTCAGGTCTGGTTTACCCTTGTTCTaGTTGAGGGGGTCATTCCGGAGTCTCTGCTTGTTC | + |
|
Preference number: 6 (lower is better) Translates to: GNVVFRSGLPLF*LRGSFRSLCLF Trigger: GAACAAGCAGAGACTCCGGAATGACCCCCTCAATCAGAACAAGGGTAAACCAGACCTGAACACAACATTGCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000074058.11 |
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| CDS TCA 72 bp | AAGCTGACGTGGTTGTTCATTCATCCGCTGGGGGTCTaGCTTCACCTTATTGCTCGGGTGGTTCGTGAATTT | + |
|
Preference number: 6 (lower is better) Translates to: KLTWLFIHPLGV*LHLIARVVREF Trigger: AAATTCACGAACCACCCGAGCAATAAGGTGAAGTCAGACCCCCAGCGGATGAATGAACAACCACGTCAGCTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000074058.11 |
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| CDS CAA 72 bp | TGTTCATTCATCCGCTGGGGGTCTGACTTCACCTTATaGCTCGGGTGGTTCGTGAATTTGGTTACTGGTTGC | + |
|
Preference number: 6 (lower is better) Translates to: CSFIRWGSDFTL*LGWFVNLVTGC Trigger: GCAACCAGTAACCAAATTCACGAACCACCCGAGCAATAAGGTGAAGTCAGACCCCCAGCGGATGAATGAACA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000074058.11 ENSMUST00000127260.8 |
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| CDS CAA 90 bp | CGCTGGGGGTCTGACTTCACCTTATTGCTCGGGTGGTTCGTGAATTaGGTTACTGGTTGCTTGAAAATTGATGCAGTTTGTCTAATTGGC | + |
|
Preference number: 6 (lower is better) Translates to: RWGSDFTLLLGWFVN*VTGCLKIDAVCLIG Trigger: GCCAATTAGACAAACTGCATCAATTTTCAAGCAACCAGTAACCAAATTCACGAACCACCCGAGCAATAAGGTGAAGTCAGACCCCCAGCG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000074058.11 ENSMUST00000127260.8 |
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| CDS CAA 90 bp | TTCCGGAGTCTCTGCTTGTTCTTCTGTAATTTACTAGGCATCATCTaGCCGGTCCTGAAGTCAAAACTGCTAAGGTCAACAGCATTTCCC | + |
|
Preference number: 6 (lower is better) Translates to: FRSLCLFFCNLLGII*PVLKSKLLRSTAFP Trigger: GGGAAATGCTGTTGACCTTAGCAGTTTTGACTTCAGGACCGGCAAGATGATGCCTAGTAAATTACAGAAGAACAAGCAGAGACTCCGGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074058.11 ENSMUST00000114946.4 |
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| CDS CCA 72 bp | TGCAGTTTGTCTAATTGGCAATGTTGTGTTCAGGTCTaGTTTACCCTTGTTCTGATTGAGGGGGTCATTCCG | + |
|
Preference number: 6 (lower is better) Translates to: CSLSNWQCCVQV*FTLVLIEGVIP Trigger: CGGAATGACCCCCTCAATCAGAACAAGGGTAAACCAGACCTGAACACAACATTGCCAATTAGACAAACTGCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000074058.11 |
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| CDS CAA 72 bp | CTCTGCTTGTTCTTCTGTAATTTACTAGGCATCATCTaGCCGGTCCTGAAGTCAAAACTGCTAAGGTCAACA | + |
|
Preference number: 6 (lower is better) Translates to: LCLFFCNLLGII*PVLKSKLLRST Trigger: TGTTGACCTTAGCAGTTTTGACTTCAGGACCGGCAAGATGATGCCTAGTAAATTACAGAAGAACAAGCAGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074058.11 ENSMUST00000114946.4 |
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| CDS CAA 72 bp | TCTGACTTCACCTTATTGCTCGGGTGGTTCGTGAATTaGGTTACTGGTTGCTTGAAAATTGATGCAGTTTGT | + |
|
Preference number: 6 (lower is better) Translates to: SDFTLLLGWFVN*VTGCLKIDAVC Trigger: ACAAACTGCATCAATTTTCAAGCAACCAGTAACCAAATTCACGAACCACCCGAGCAATAAGGTGAAGTCAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074058.11 ENSMUST00000127260.8 |
||
| CDS CAA 90 bp | TTCACCTTATTGCTCGGGTGGTTCGTGAATTTGGTTACTGGTTGCTaGAAAATTGATGCAGTTTGTCTAATTGGCAATGTTGTGTTCAGG | + |
|
Preference number: 6 (lower is better) Translates to: FTLLLGWFVNLVTGC*KIDAVCLIGNVVFR Trigger: CCTGAACACAACATTGCCAATTAGACAAACTGCATCAATTTTCAAGCAACCAGTAACCAAATTCACGAACCACCCGAGCAATAAGGTGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074058.11 ENSMUST00000127260.8 |
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| CDS CAA 72 bp | TTGCTCGGGTGGTTCGTGAATTTGGTTACTGGTTGCTaGAAAATTGATGCAGTTTGTCTAATTGGCAATGTT | + |
|
Preference number: 6 (lower is better) Translates to: LLGWFVNLVTGC*KIDAVCLIGNV Trigger: AACATTGCCAATTAGACAAACTGCATCAATTTTCAAGCAACCAGTAACCAAATTCACGAACCACCCGAGCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074058.11 ENSMUST00000127260.8 |
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