RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MBD1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024561

Ensembl transcript IDs: ENSMUST00000097530.5, ENSMUST00000224047.2, ENSMUST00000224332.2, ENSMUST00000239157.2

Found 322 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CAATCCCAGTGTGTTCCTACAGACTACTGTGAGGTTCACTGTCGCTaGCTCCACAGCGGAGCTCAGCAAACAGCAGTCCCTTTCCCGCCT +
Preference number: 1 (lower is better)
Translates to: QSQCVPTDYCEVHCR*LHSGAQQTAVPFPP
Trigger: AGGCGGGAAAGGGACTGCTGTTTGCTGAGCTCCGCTGTGGAGCCAGCGACAGTGAACCTCACAGTAGTCTGTAGGAACACACTGGGATTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
3UTR TCA 90 bp CACCTGCAAAAGTGCACAATCCCAGTGTGTTCCTACAGACTACTGTaGGGTTCACTGTCGCTGGCTCCACAGCGGAGCTCAGCAAACAGC +
Preference number: 1 (lower is better)
Translates to: HLQKCTIPVCSYRLL*GSLSLAPQRSSANS
Trigger: GCTGTTTGCTGAGCTCCGCTGTGGAGCCAGCGACAGTGAACCTCACAGTAGTCTGTAGGAACACACTGGGATTGTGCACTTTTGCAGGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
3UTR GCA 90 bp GCAGGACACCATGCACTTTGCAGTTCATACACTCTGTCACTAGTCTaGTGTCTCACCTTGGTATGGGGAAAACAGCCTGGCCTCCAGCCA +
Preference number: 1 (lower is better)
Translates to: AGHHALCSSYTLSLV*CLTLVWGKQPGLQP
Trigger: TGGCTGGAGGCCAGGCTGTTTTCCCCATACCAAGGTGAGACAGCAGACTAGTGACAGAGTGTATGAACTGCAAAGTGCATGGTGTCCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
3UTR CCA 90 bp GTTGATTCACACTCAAGCTCTGCAACCAGGCCAGGGCCCAGCCCCTaGAGATCAGGGTTGTCTTTCATAAAGCCGGTCTGCAAATATCAC +
Preference number: 1 (lower is better)
Translates to: VDSHSSSATRPGPSP*RSGLSFIKPVCKYH
Trigger: GTGATATTTGCAGACCGGCTTTATGAAAGACAACCCTGATCTCCAGGGGCTGGGCCCTGGCCTGGTTGCAGAGCTTGAGTGTGAATCAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
3UTR TCA 90 bp AAGCTGGAGGCGGTGAGACGCTGCATGGATTCCAGGCCATCTTCTTaGATTCCAACTCTTGTTTCAAGGGCTCCCATATGTCCACCTACC +
Preference number: 1 (lower is better)
Translates to: KLEAVRRCMDSRPSS*IPTLVSRAPICPPT
Trigger: GGTAGGTGGACATATGGGAGCCCTTGAAACAAGAGTTGGAATTCAAGAAGATGGCCTGGAATCCATGCAGCGTCTCACCGCCTCCAGCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
3UTR GCA 90 bp TTTGGGCTGAGGGCAGGAAACAAGCAAAGATCATCAGAGAGCAGCTaGCAGGAAAAGAGGGGTCAGGCTAACAGCTTTAGTCCCAAGCAC +
Preference number: 1 (lower is better)
Translates to: FGLRAGNKQRSSESS*QEKRGQANSFSPKH
Trigger: GTGCTTGGGACTAAAGCTGTTAGCCTGACCCCTCTTTTCCTGGCAGCTGCTCTCTGATGATCTTTGCTTGTTTCCTGCCCTCAGCCCAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
3UTR CCA 90 bp ACGCAGCATCCAGGGCCTAACAAGGTGATCCATCTACTCACAGCCTaGGCCTCCCCTAAACCACGACAAAGGCAAGACATAAAGAATCTC +
Preference number: 1 (lower is better)
Translates to: TQHPGPNKVIHLLTA*ASPKPRQRQDIKNL
Trigger: GAGATTCTTTATGTCTTGCCTTTGTCGTGGTTTAGGGGAGGCCCAGGCTGTGAGTAGATGGATCACCTTGTTAGGCCCTGGATGCTGCGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
3UTR GCA 90 bp ATCCAACTTCTCATCTCACTGAGATCCTCGGAGGAGCAGATGTGCTaGCAGCCTTCTACTCTCTTTCTCTTCCTCTCCAGCTTGCTTCCT +
Preference number: 1 (lower is better)
Translates to: IQLLISLRSSEEQMC*QPSTLFLFLSSLLP
Trigger: AGGAAGCAAGCTGGAGAGGAAGAGAAAGAGAGTAGAAGGCTGGCAGCACATCTGCTCCTCCGAGGATCTCAGTGAGATGAGAAGTTGGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
3UTR TCA 90 bp CATTTTCAGCAATGTAGTTTTGTTATGTCATCCTCAGGTGAGTGGTaGGCCCTTGGGAGCCGGCTCATGGCAGAGTGGCTTTCTAACATG +
Preference number: 1 (lower is better)
Translates to: HFQQCSFVMSSSGEW*ALGSRLMAEWLSNM
Trigger: CATGTTAGAAAGCCACTCTGCCATGAGCCGGCTCCCAAGGGCTCACCACTCACCTGAGGATGACATAACAAAACTACATTGCTGAAAATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
3UTR CCA 90 bp GTCTGTGAGAGGGATCCAGATCTGCATTACCTAAGACAGCAGAGCTaGGACAAAGCTAATACATGGGGTACACAGGACACACATATGGTG +
Preference number: 1 (lower is better)
Translates to: VCERDPDLHYLRQQS*DKANTWGTQDTHMV
Trigger: CACCATATGTGTGTCCTGTGTACCCCATGTATTAGCTTTGTCCCAGCTCTGCTGTCTTAGGTAATGCAGATCTGGATCCCTCTCACAGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
3UTR TCA 90 bp TTCAGACACACTGCCAGGTCATCCAGAAGCCACCAACAAATACACTaGAGATGGCTGTGTGAGTTGTCTGTAGTGCTTCAGCTATCCTTC +
Preference number: 1 (lower is better)
Translates to: FRHTARSSRSHQQIH*RWLCELSVVLQLSF
Trigger: GAAGGATAGCTGAAGCACTACAGACAACTCACACAGCCATCTTCAGTGTATTTGTTGGTGGCTTCTGGATGACCTGGCAGTGTGTCTGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
3UTR CCA 90 bp TTTGGCATTTTAAGAATGGGAAATGAGGTAAGGCTGAGCCAAGACTaGTCCTCGGGTAGGACTCAGTGTATAAATTCACTCAGCCTCCTA +
Preference number: 1 (lower is better)
Translates to: FGILRMGNEVRLSQD*SSGRTQCINSLSLL
Trigger: TAGGAGGCTGAGTGAATTTATACACTGAGTCCTACCCGAGGACCAGTCTTGGCTCAGCCTTACCTCATTTCCCATTCTTAAAATGCCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
3UTR TCA 90 bp AACAGAGTAATCGGCTTTGGATCAGAAGTCCAGATACTCCATTCTTaGGTGTCAGGATCCCAGGCAAAACTGGCAATACAATCCAGGAAA +
Preference number: 1 (lower is better)
Translates to: NRVIGFGSEVQILHS*VSGSQAKLAIQSRK
Trigger: TTTCCTGGATTGTATTGCCAGTTTTGCCTGGGATCCTGACACTCAAGAATGGAGTATCTGGACTTCTGATCCAAAGCCGATTACTCTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
3UTR TCA 90 bp ATTAAGGCTCAAGAAGCCGAAGTGCTTTGTCGAGTCACCCAACTGTaGATAAAATCTCCCTACTGCACCGAACAGAAAATGGAACTCACA +
Preference number: 1 (lower is better)
Translates to: IKAQEAEVLCRVTQL*IKSPYCTEQKMELT
Trigger: TGTGAGTTCCATTTTCTGTTCGGTGCAGTAGGGAGATTTTATTCACAGTTGGGTGACTCGACAAAGCACTTCGGCTTCTTGAGCCTTAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
3UTR TCA 90 bp AATCTCTTAGTGTTCACAGTGACCCACTGCTATGTTTACAGTCACTaGAACTGTTATTGTAATATACATTATTGCACAGAAGGTTGCAGT +
Preference number: 1 (lower is better)
Translates to: NLLVFTVTHCYVYSH*NCYCNIHYCTEGCS
Trigger: ACTGCAACCTTCTGTGCAATAATGTATATTACAATAACAGTTTCAGTGACTGTAAACATAGCAGTGGGTCACTGTGAACACTAAGAGATT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
3UTR-3UTR GCA 90 bp CTTGGGAGGCCGGTGCAGGACACCATGCACTTTGCAGTTCATACACTCTGTCACTTCACACTCAAGCTCTaGAACCAGGCCAGGGCCCAG +
Preference number: 2 (lower is better)
Translates to: LGRPVQDTMHFAVHTLCHFTLKL*NQARAQ
Trigger: CTGGGCCCTGGCCTGGTTGCAGAGCTTGAGTGTGAA...GTGACAGAGTGTATGAACTGCAAAGTGCATGGTGTCCTGCACCGGCCTCCCAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
3UTR-3UTR GCA 90 bp AGCGGTGGGGAAGGACACGCTGAGGAACAGAGGGAGCCTACGCAGCATCCAGGGGCAGAGCATTGCAACTaGTGTTTCCCTGAGAAAATG +
Preference number: 2 (lower is better)
Translates to: SGGEGHAEEQREPTQHPGAEHCN*CFPEKM
Trigger: CATTTTCTCAGGGAAACAGCAGTTGCAATGCTCTGC...CCCTGGATGCTGCGTAGGCTCCCTCTGTTCCTCAGCGTGTCCTTCCCCACCGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
3UTR-3UTR GCA 90 bp TCTGGGCACAGCAAACTGTCAGCCAGCGGTGGGGAAGGACACGCTGAGGAACAGACCCACCTGCAAAAGTaGACAATCCCAGTGTGTTCC +
Preference number: 2 (lower is better)
Translates to: SGHSKLSASGGEGHAEEQTHLQK*TIPVCS
Trigger: GGAACACACTGGGATTGTGCACTTTTGCAGGTGGGT...CTGTTCCTCAGCGTGTCCTTCCCCACCGCTGGCTGACAGTTTGCTGTGCCCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
3UTR-3UTR TCA 90 bp TCTGCTGTCTCACCTTGGTATGGGGAAAACAGCCTGGCCTCCAGCCAGGCTTTTCAGGGCCTAACAAGGTaGTCCATCTACTCACAGCCT +
Preference number: 2 (lower is better)
Translates to: SAVSPWYGENSLASSQAFQGLTR*SIYSQP
Trigger: AGGCTGTGAGTAGATGGATCACCTTGTTAGGCCCTG...AAAAGCCTGGCTGGAGGCCAGGCTGTTTTCCCCATACCAAGGTGAGACAGCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
3UTR-3UTR CCA 90 bp GACAGCAGAGCTGGGACAAAGCTAATACATGGGGTACACAGGACACACATATGGCCAGGGCCCAGCCCCTaGAGATCAGGGTTGTCTTTC +
Preference number: 2 (lower is better)
Translates to: DSRAGTKLIHGVHRTHIWPGPSP*RSGLSF
Trigger: GAAAGACAACCCTGATCTCCAGGGGCTGGGCCCTGG...CCATATGTGTGTCCTGTGTACCCCATGTATTAGCTTTGTCCCAGCTCTGCTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
3UTR-3UTR CCA 90 bp AGCAATGTAGTTTTGTTATGTCATCCTCAGGTGAGTGGTGAGCCCTTGGGAGCCAGGCAGAGACCACGGTaGCAGAGCTCTGTCTGTGAG +
Preference number: 2 (lower is better)
Translates to: SNVVLLCHPQVSGEPLGARQRPR*QSSVCE
Trigger: CTCACAGACAGAGCTCTGCCACCGTGGTCTCTGCCT...GGCTCCCAAGGGCTCACCACTCACCTGAGGATGACATAACAAAACTACATTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
3UTR CAA 90 bp AGCAATGTAGTTTTGTTATGTCATCCTCAGGTGAGTGGTGAGCCCTaGGGAGCCGGCTCATGGCAGAGTGGCTTTCTAACATGTCACCTG +
Preference number: 2 (lower is better)
Translates to: SNVVLLCHPQVSGEP*GAGSWQSGFLTCHL
Trigger: CAGGTGACATGTTAGAAAGCCACTCTGCCATGAGCCGGCTCCCAAGGGCTCACCACTCACCTGAGGATGACATAACAAAACTACATTGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
3UTR-3UTR CCA 90 bp GAGACGCTGCATGGATTCCAGGCCATCTTCTTGAATTCCAACTCTTGTTTCAAGAGGCTGAGCCAAGACTaGTCCTCGGGTAGGACTCAG +
Preference number: 2 (lower is better)
Translates to: ETLHGFQAIFLNSNSCFKRLSQD*SSGRTQ
Trigger: CTGAGTCCTACCCGAGGACCAGTCTTGGCTCAGCCT...CTTGAAACAAGAGTTGGAATTCAAGAAGATGGCCTGGAATCCATGCAGCGTCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
3UTR CAA 90 bp TCCACAGCGGAGCTCAGCAAACAGCAGTCCCTTTCCCGCCTTTATTaGCAGAGCATTGCAACTGCTGTTTCCCTGAGAAAATGTTCAGAC +
Preference number: 2 (lower is better)
Translates to: STAELSKQQSLSRLY*QSIATAVSLRKCSD
Trigger: GTCTGAACATTTTCTCAGGGAAACAGCAGTTGCAATGCTCTGCAAATAAAGGCGGGAAAGGGACTGCTGTTTGCTGAGCTCCGCTGTGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
3UTR-3UTR TCA 90 bp TCTGCTGTCTCACCTTGGTATGGGGAAAACAGCCTGGCCTCCAGCCAGGCTTTTTTTAAGAATGGGAAATaGGGTAAGGCTGAGCCAAGA +
Preference number: 2 (lower is better)
Translates to: SAVSPWYGENSLASSQAFFKNGK*GKAEPR
Trigger: TCTTGGCTCAGCCTTACCTCATTTCCCATTCTTAAA...AAAAGCCTGGCTGGAGGCCAGGCTGTTTTCCCCATACCAAGGTGAGACAGCAGA
50% GC, longest homopolymer 7 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
3UTR-3UTR GCA 90 bp TCTGCTGTCTCACCTTGGTATGGGGAAAACAGCCTGGCCTCCAGCCAGGCTTTTTATTGCACAGAAGGTTaGAGTGAACAGTTTAGTGGC +
Preference number: 2 (lower is better)
Translates to: SAVSPWYGENSLASSQAFYCTEG*SEQFSG
Trigger: GCCACTAAACTGTTCACTGCAACCTTCTGTGCAATA...AAAAGCCTGGCTGGAGGCCAGGCTGTTTTCCCCATACCAAGGTGAGACAGCAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
3UTR-3UTR GCA 90 bp GAGACGCTGCATGGATTCCAGGCCATCTTCTTGAATTCCAACTCTTGTTTCAAGTCATCAGAGAGCAGCTaGCAGGAAAAGAGGGGTCAG +
Preference number: 2 (lower is better)
Translates to: ETLHGFQAIFLNSNSCFKSSESS*QEKRGQ
Trigger: CTGACCCCTCTTTTCCTGGCAGCTGCTCTCTGATGA...CTTGAAACAAGAGTTGGAATTCAAGAAGATGGCCTGGAATCCATGCAGCGTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
3UTR-3UTR CCA 90 bp ACGGATGAGCTGGACAGGATTTCTTTACTTGCTGGGAACATCATGACATCCATGTCCACAGAAACGCTGTaGCTAGTGGAAGGGAAGCAG +
Preference number: 2 (lower is better)
Translates to: TDELDRISLLAGNIMTSMSTETL*LVEGKQ
Trigger: CTGCTTCCCTTCCACTAGCCACAGCGTTTCTGTGGA...CATGGATGTCATGATGTTCCCAGCAAGTAAAGAAATCCTGTCCAGCTCATCCGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
3UTR-3UTR TCA 90 bp AACAGAAAATGGAACTCACAGTTTGGGCTAACACAGGAAGAGGGCAGATCAGATTGCTCAAGAGCCAATTaGTTGCTACTGTGGTGCCCC +
Preference number: 2 (lower is better)
Translates to: NRKWNSQFGLTQEEGRSDCSRAN*LLLWCP
Trigger: GGGGCACCACAGTAGCAATCAATTGGCTCTTGAGCA...ATCTGATCTGCCCTCTTCCTGTGTTAGCCCAAACTGTGAGTTCCATTTTCTGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
3UTR-3UTR GCA 90 bp GAGACGCTGCATGGATTCCAGGCCATCTTCTTGAATTCCAACTCTTGTTTCAAGGAGGAGCAGATGTGCTaGCAGCCTTCTACTCTCTTT +
Preference number: 2 (lower is better)
Translates to: ETLHGFQAIFLNSNSCFKEEQMC*QPSTLF
Trigger: AAAGAGAGTAGAAGGCTGGCAGCACATCTGCTCCTC...CTTGAAACAAGAGTTGGAATTCAAGAAGATGGCCTGGAATCCATGCAGCGTCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
3UTR-3UTR TCA 90 bp AACAGAAAATGGAACTCACAGTTTGGGCTAACACAGGAAGAGGGCAGATCAGATCAGATACTCCATTCTTaGGTGTCAGGATCCCAGGCA +
Preference number: 2 (lower is better)
Translates to: NRKWNSQFGLTQEEGRSDQILHS*VSGSQA
Trigger: TGCCTGGGATCCTGACACTCAAGAATGGAGTATCTG...ATCTGATCTGCCCTCTTCCTGTGTTAGCCCAAACTGTGAGTTCCATTTTCTGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
3UTR-3UTR TCA 90 bp TACACAGGACACACATATGGTGAGGTACAGTCCTGCCCTGTAAAGTTGACTAAGCTGAAGATGGCTGTGTaGGTTGTCTGTAGTGCTTCA +
Preference number: 2 (lower is better)
Translates to: YTGHTYGEVQSCPVKLTKLKMAV*VVCSAS
Trigger: TGAAGCACTACAGACAACTCACACAGCCATCTTCAG...CTTAGTCAACTTTACAGGGCAGGACTGTACCTCACCATATGTGTGTCCTGTGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
3UTR-3UTR TCA 90 bp AGCAATGTAGTTTTGTTATGTCATCCTCAGGTGAGTGGTGAGCCCTTGGGAGCCAAAGCTCATCTCTTCTaGATCTTACCCACCTGCAAA +
Preference number: 2 (lower is better)
Translates to: SNVVLLCHPQVSGEPLGAKAHLF*ILPTCK
Trigger: TTTGCAGGTGGGTAAGATTCAGAAGAGATGAGCTTT...GGCTCCCAAGGGCTCACCACTCACCTGAGGATGACATAACAAAACTACATTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
3UTR-3UTR TCA 90 bp ACGGATGAGCTGGACAGGATTTCTTTACTTGCTGGGAACATCATGACATCCATGCAACTGCTGTTTCCCTaGGAAAATGTTCAGACACAC +
Preference number: 2 (lower is better)
Translates to: TDELDRISLLAGNIMTSMQLLFP*ENVQTH
Trigger: GTGTGTCTGAACATTTTCTCAGGGAAACAGCAGTTG...CATGGATGTCATGATGTTCCCAGCAAGTAAAGAAATCCTGTCCAGCTCATCCGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
3UTR-3UTR GCA 90 bp GCACCGAACAGAAAATGGAACTCACAGTTTGGGCTAACACAGGAAGAGGGCAGACTGACAGATACTAAGTaGAATTCATGTGTATACACG +
Preference number: 2 (lower is better)
Translates to: APNRKWNSQFGLTQEEGRLTDTK*NSCVYT
Trigger: CGTGTATACACATGAATTGCACTTAGTATCTGTCAG...TCTGCCCTCTTCCTGTGTTAGCCCAAACTGTGAGTTCCATTTTCTGTTCGGTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
3UTR-3UTR GCA 90 bp ACGGATGAGCTGGACAGGATTTCTTTACTTGCTGGGAACATCATGACATCCATGTTATTTGCAGAGCATTaGAACTGCTGTTTCCCTGAG +
Preference number: 2 (lower is better)
Translates to: TDELDRISLLAGNIMTSMLFAEH*NCCFPE
Trigger: CTCAGGGAAACAGCAGTTGCAATGCTCTGCAAATAA...CATGGATGTCATGATGTTCCCAGCAAGTAAAGAAATCCTGTCCAGCTCATCCGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
3UTR-3UTR GCA 90 bp AGTCCAGATACTCCATTCTTGAGTGTCAGGATCCCAGGCAAAACTGGCAATACACTGACAGATACTAAGTaGAATTCATGTGTATACACG +
Preference number: 2 (lower is better)
Translates to: SPDTPFLSVRIPGKTGNTLTDTK*NSCVYT
Trigger: CGTGTATACACATGAATTGCACTTAGTATCTGTCAG...TGTATTGCCAGTTTTGCCTGGGATCCTGACACTCAAGAATGGAGTATCTGGACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
3UTR-3UTR CCA 90 bp TCTCCCTACTGCACCGAACAGAAAATGGAACTCACAGTTTGGGCTAACACAGGATTCAGATTCTCTACATaGTACATCTCTAGATTTGCA +
Preference number: 2 (lower is better)
Translates to: SPYCTEQKMELTVWANTGFRFST*YISRFA
Trigger: TGCAAATCTAGAGATGTACCATGTAGAGAATCTGAA...TCCTGTGTTAGCCCAAACTGTGAGTTCCATTTTCTGTTCGGTGCAGTAGGGAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
3UTR-3UTR TCA 90 bp ATCCATGGTCTTCGGCCTTACATTTTCAGCAATGTAGTTTTGTTATGTCATCCTCACCAACAAATACACTaGAGATGGCTGTGTGAGTTG +
Preference number: 2 (lower is better)
Translates to: IHGLRPYIFSNVVLLCHPHQQIH*RWLCEL
Trigger: CAACTCACACAGCCATCTTCAGTGTATTTGTTGGTG...AGGATGACATAACAAAACTACATTGCTGAAAATGTAAGGCCGAAGACCATGGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
3UTR-3UTR CCA 90 bp AGTCCAGATACTCCATTCTTGAGTGTCAGGATCCCAGGCAAAACTGGCAATACATTCAGATTCTCTACATaGTACATCTCTAGATTTGCA +
Preference number: 2 (lower is better)
Translates to: SPDTPFLSVRIPGKTGNTFRFST*YISRFA
Trigger: TGCAAATCTAGAGATGTACCATGTAGAGAATCTGAA...TGTATTGCCAGTTTTGCCTGGGATCCTGACACTCAAGAATGGAGTATCTGGACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
3UTR TCA 72 bp CAGCAAACTGTCAGCCAGCGGTGGGGAAGGACACGCTaGGGAACAGAGGGAGCCTACGCAGCATCCAGGGCC +
Preference number: 3 (lower is better)
Translates to: QQTVSQRWGRTR*GTEGAYAASRA
Trigger: GGCCCTGGATGCTGCGTAGGCTCCCTCTGTTCCTCAGCGTGTCCTTCCCCACCGCTGGCTGACAGTTTGCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
3UTR TCA 72 bp AGAGGGAGCCTACGCAGCATCCAGGGCCTAACAAGGTaGTCCATCTACTCACAGCCTGGGCCTCCCCTAAAC +
Preference number: 3 (lower is better)
Translates to: RGSLRSIQGLTR*SIYSQPGPPLN
Trigger: GTTTAGGGGAGGCCCAGGCTGTGAGTAGATGGATCACCTTGTTAGGCCCTGGATGCTGCGTAGGCTCCCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
3UTR TCA 72 bp CAGGCTAACAGCTTTAGTCCCAAGCACCGCCCTGCCTaGAGTGCGAGTGTCTGGGCACAGCAAACTGTCAGC +
Preference number: 3 (lower is better)
Translates to: QANSFSPKHRPA*SASVWAQQTVS
Trigger: GCTGACAGTTTGCTGTGCCCAGACACTCGCACTTCAGGCAGGGCGGTGCTTGGGACTAAAGCTGTTAGCCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
3UTR-3UTR CAA 90 bp CTAACAGCTTTAGTCCCAAGCACCGCCCTGCCTGAAGTGCGAGTGTCTGGGCACCTCTTCCTCTCCAGCTaGCTTCCTCTAAGGTCCAAG +
Preference number: 3 (lower is better)
Translates to: LTALVPSTALPEVRVSGHLFLSS*LPLRSK
Trigger: CTTGGACCTTAGAGGAAGCAAGCTGGAGAGGAAGAG...GTGCCCAGACACTCGCACTTCAGGCAGGGCGGTGCTTGGGACTAAAGCTGTTAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
3UTR CCA 72 bp CCTCAGGTGAGTGGTGAGCCCTTGGGAGCCGGCTCATaGCAGAGTGGCTTTCTAACATGTCACCTGGACTAT +
Preference number: 3 (lower is better)
Translates to: PQVSGEPLGAGS*QSGFLTCHLDY
Trigger: ATAGTCCAGGTGACATGTTAGAAAGCCACTCTGCCATGAGCCGGCTCCCAAGGGCTCACCACTCACCTGAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
3UTR-3UTR CAA 90 bp TCTGGGCACAGCAAACTGTCAGCCAGCGGTGGGGAAGGACACGCTGAGGAACAGAGATGGCTGTGTGAGTaGTCTGTAGTGCTTCAGCTA +
Preference number: 3 (lower is better)
Translates to: SGHSKLSASGGEGHAEEQRWLCE*SVVLQL
Trigger: TAGCTGAAGCACTACAGACAACTCACACAGCCATCT...CTGTTCCTCAGCGTGTCCTTCCCCACCGCTGGCTGACAGTTTGCTGTGCCCAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
3UTR CCA 72 bp TGTGTTCCTACAGACTACTGTGAGGTTCACTGTCGCTaGCTCCACAGCGGAGCTCAGCAAACAGCAGTCCCT +
Preference number: 3 (lower is better)
Translates to: CVPTDYCEVHCR*LHSGAQQTAVP
Trigger: AGGGACTGCTGTTTGCTGAGCTCCGCTGTGGAGCCAGCGACAGTGAACCTCACAGTAGTCTGTAGGAACACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
3UTR CCA 72 bp ACAGAAACGCTGTGGCTAGTGGAAGGGAAGCAGCAGTaGACGGTTGTTAAAACTTGGGAGGCCGGTGCAGGA +
Preference number: 3 (lower is better)
Translates to: TETLWLVEGKQQ*TVVKTWEAGAG
Trigger: TCCTGCACCGGCCTCCCAAGTTTTAACAACCGTCCACTGCTGCTTCCCTTCCACTAGCCACAGCGTTTCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
3UTR TCA 72 bp TTCCTCTCCAGCTTGCTTCCTCTAAGGTCCAAGGACTaGGCAGGCCTGCTCCTCGTTGTGCTTGTAGGTTTC +
Preference number: 3 (lower is better)
Translates to: FLSSLLPLRSKD*AGLLLVVLVGF
Trigger: GAAACCTACAAGCACAACGAGGAGCAGGCCTGCTCAGTCCTTGGACCTTAGAGGAAGCAAGCTGGAGAGGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
3UTR TCA 72 bp GCAAAGGCAGAGACCACGGTGGCAGAGCTCTGTCTGTaGGAGGGATCCAGATCTGCATTACCTAAGACAGCA +
Preference number: 3 (lower is better)
Translates to: AKAETTVAELCL*EGSRSALPKTA
Trigger: TGCTGTCTTAGGTAATGCAGATCTGGATCCCTCTCACAGACAGAGCTCTGCCACCGTGGTCTCTGCCTTTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
3UTR TCA 72 bp CAATGTAGTTTTGTTATGTCATCCTCAGGTGAGTGGTaGGCCCTTGGGAGCCGGCTCATGGCAGAGTGGCTT +
Preference number: 3 (lower is better)
Translates to: QCSFVMSSSGEW*ALGSRLMAEWL
Trigger: AAGCCACTCTGCCATGAGCCGGCTCCCAAGGGCTCACCACTCACCTGAGGATGACATAACAAAACTACATTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
3UTR GCA 72 bp AAAACTTGGGAGGCCGGTGCAGGACACCATGCACTTTaGAGTTCATACACTCTGTCACTAGTCTGCTGTCTC +
Preference number: 3 (lower is better)
Translates to: KTWEAGAGHHAL*SSYTLSLVCCL
Trigger: GAGACAGCAGACTAGTGACAGAGTGTATGAACTGCAAAGTGCATGGTGTCCTGCACCGGCCTCCCAAGTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
3UTR-3UTR CAA 90 bp TCTCCCTACTGCACCGAACAGAAAATGGAACTCACAGTTTGGGCTAACACAGGACCAGATACTCCATTCTaGAGTGTCAGGATCCCAGGC +
Preference number: 3 (lower is better)
Translates to: SPYCTEQKMELTVWANTGPDTPF*SVRIPG
Trigger: GCCTGGGATCCTGACACTCAAGAATGGAGTATCTGG...TCCTGTGTTAGCCCAAACTGTGAGTTCCATTTTCTGTTCGGTGCAGTAGGGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
3UTR TCA 72 bp GCGGTGAGACGCTGCATGGATTCCAGGCCATCTTCTTaGATTCCAACTCTTGTTTCAAGGGCTCCCATATGT +
Preference number: 3 (lower is better)
Translates to: AVRRCMDSRPSS*IPTLVSRAPIC
Trigger: ACATATGGGAGCCCTTGAAACAAGAGTTGGAATTCAAGAAGATGGCCTGGAATCCATGCAGCGTCTCACCGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
3UTR GCA 72 bp CATGCACTTTGCAGTTCATACACTCTGTCACTAGTCTaGTGTCTCACCTTGGTATGGGGAAAACAGCCTGGC +
Preference number: 3 (lower is better)
Translates to: HALCSSYTLSLV*CLTLVWGKQPG
Trigger: GCCAGGCTGTTTTCCCCATACCAAGGTGAGACAGCAGACTAGTGACAGAGTGTATGAACTGCAAAGTGCATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
3UTR-3UTR CAA 90 bp GCAGATCAGATACACTGGCGGGGCAGTTGTCTAACTGGACTGGACACAATAGTCAGGTCTTCAGCACACTaGGAAATCAGAGCTGTAGTT +
Preference number: 3 (lower is better)
Translates to: ADQIHWRGSCLTGLDTIVRSSAH*EIRAVV
Trigger: AACTACAGCTCTGATTTCCAAGTGTGCTGAAGACCT...GACTATTGTGTCCAGTCCAGTTAGACAACTGCCCCGCCAGTGTATCTGATCTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
3UTR GCA 72 bp CCCTGGAGATCAGGGTTGTCTTTCATAAAGCCGGTCTaGAAATATCACCTTCAGTCCTACAGTCAGCAGAAG +
Preference number: 3 (lower is better)
Translates to: PWRSGLSFIKPV*KYHLQSYSQQK
Trigger: CTTCTGCTGACTGTAGGACTGAAGGTGATATTTGCAGACCGGCTTTATGAAAGACAACCCTGATCTCCAGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
3UTR GCA 72 bp GTCCCTTTCCCGCCTTTATTTGCAGAGCATTGCAACTaGTGTTTCCCTGAGAAAATGTTCAGACACACTGCC +
Preference number: 3 (lower is better)
Translates to: VPFPPLFAEHCN*CFPEKMFRHTA
Trigger: GGCAGTGTGTCTGAACATTTTCTCAGGGAAACAGCAGTTGCAATGCTCTGCAAATAAAGGCGGGAAAGGGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
3UTR-3UTR CAA 90 bp TCTTACCCACCTGCAAAAGTGCACAATCCCAGTGTGTTCCTACAGACTACTGTGGTTTCTCTCCTAGGGTaGATTCACACTCAAGCTCTG +
Preference number: 3 (lower is better)
Translates to: SYPPAKVHNPSVFLQTTVVSLLG*IHTQAL
Trigger: CAGAGCTTGAGTGTGAATCAACCCTAGGAGAGAAAC...CACAGTAGTCTGTAGGAACACACTGGGATTGTGCACTTTTGCAGGTGGGTAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
3UTR-3UTR CAA 90 bp AGACAGCAGAGCTGGGACAAAGCTAATACATGGGGTACACAGGACACACATATGCTTTCCCGCCTTTATTaGCAGAGCATTGCAACTGCT +
Preference number: 3 (lower is better)
Translates to: RQQSWDKANTWGTQDTHMLSRLY*QSIATA
Trigger: AGCAGTTGCAATGCTCTGCAAATAAAGGCGGGAAAG...CATATGTGTGTCCTGTGTACCCCATGTATTAGCTTTGTCCCAGCTCTGCTGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
3UTR-3UTR CAA 90 bp TCTCCCTACTGCACCGAACAGAAAATGGAACTCACAGTTTGGGCTAACACAGGAAGGTCTTCAGCACACTaGGAAATCAGAGCTGTAGTT +
Preference number: 3 (lower is better)
Translates to: SPYCTEQKMELTVWANTGRSSAH*EIRAVV
Trigger: AACTACAGCTCTGATTTCCAAGTGTGCTGAAGACCT...TCCTGTGTTAGCCCAAACTGTGAGTTCCATTTTCTGTTCGGTGCAGTAGGGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
3UTR TCA 72 bp CTTCCTAACTCCCCATCCAGAATACTCTACCCTTCCTaGCTCCCCATCCTGAATACTATTAAGTCCCAGCAT +
Preference number: 3 (lower is better)
Translates to: LPNSPSRILYPS*LPILNTIKSQH
Trigger: ATGCTGGGACTTAATAGTATTCAGGATGGGGAGTCAGGAAGGGTAGAGTATTCTGGATGGGGAGTTAGGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
3UTR CCA 72 bp TACCTAAGACAGCAGAGCTGGGACAAAGCTAATACATaGGGTACACAGGACACACATATGGTGAGGTACAGT +
Preference number: 3 (lower is better)
Translates to: YLRQQSWDKANT*GTQDTHMVRYS
Trigger: ACTGTACCTCACCATATGTGTGTCCTGTGTACCCCATGTATTAGCTTTGTCCCAGCTCTGCTGTCTTAGGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
3UTR-3UTR CAA 90 bp GCACCGAACAGAAAATGGAACTCACAGTTTGGGCTAACACAGGAAGAGGGCAGATATACACGGTTAAGGTaGGTTTTCTTCCAATTAGCG +
Preference number: 3 (lower is better)
Translates to: APNRKWNSQFGLTQEEGRYTRLR*VFFQLA
Trigger: CGCTAATTGGAAGAAAACCAACCTTAACCGTGTATA...TCTGCCCTCTTCCTGTGTTAGCCCAAACTGTGAGTTCCATTTTCTGTTCGGTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
3UTR TCA 72 bp CAAGAAGCCGAAGTGCTTTGTCGAGTCACCCAACTGTaGATAAAATCTCCCTACTGCACCGAACAGAAAATG +
Preference number: 3 (lower is better)
Translates to: QEAEVLCRVTQL*IKSPYCTEQKM
Trigger: CATTTTCTGTTCGGTGCAGTAGGGAGATTTTATTCACAGTTGGGTGACTCGACAAAGCACTTCGGCTTCTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
3UTR-3UTR CAA 90 bp ATCAGAAGTCCAGATACTCCATTCTTGAGTGTCAGGATCCCAGGCAAAACTGGCTATACACGGTTAAGGTaGGTTTTCTTCCAATTAGCG +
Preference number: 3 (lower is better)
Translates to: IRSPDTPFLSVRIPGKTGYTRLR*VFFQLA
Trigger: CGCTAATTGGAAGAAAACCAACCTTAACCGTGTATA...GCCAGTTTTGCCTGGGATCCTGACACTCAAGAATGGAGTATCTGGACTTCTGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
3UTR CCA 72 bp CAGTGTATAAATTCACTCAGCCTCCTAACAAACCTTTaGGCTGAGGGCAGGAAACAAGCAAAGATCATCAGA +
Preference number: 3 (lower is better)
Translates to: QCINSLSLLTNL*AEGRKQAKIIR
Trigger: TCTGATGATCTTTGCTTGTTTCCTGCCCTCAGCCCAAAGGTTTGTTAGGAGGCTGAGTGAATTTATACACTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
3UTR TCA 72 bp GTGTTCACAGTGACCCACTGCTATGTTTACAGTCACTaGAACTGTTATTGTAATATACATTATTGCACAGAA +
Preference number: 3 (lower is better)
Translates to: VFTVTHCYVYSH*NCYCNIHYCTE
Trigger: TTCTGTGCAATAATGTATATTACAATAACAGTTTCAGTGACTGTAAACATAGCAGTGGGTCACTGTGAACAC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
CDS-3UTR TCA 90 bp AGCGGTGGGGAAGGACACGCTGAGGAACAGAGGGAGCCTACGCAGCATCCAGGGCTTGCAGTAAAGCCCTaGGGCCACATCACTGGGCAG +
Preference number: 4 (lower is better)
Translates to: SGGEGHAEEQREPTQHPGLAVKP*GHITGQ
Trigger: CTGCCCAGTGATGTGGCCTCAGGGCTTTACTGCAAG...CCCTGGATGCTGCGTAGGCTCCCTCTGTTCCTCAGCGTGTCCTTCCCCACCGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
CDS-3UTR GCA 90 bp AGCGGTGGGGAAGGACACGCTGAGGAACAGAGGGAGCCTACGCAGCATCCAGGGACATCACTGGGCAGTTaGAGGCGACAGGTGGAGCAC +
Preference number: 4 (lower is better)
Translates to: SGGEGHAEEQREPTQHPGTSLGS*RRQVEH
Trigger: GTGCTCCACCTGTCGCCTGCAACTGCCCAGTGATGT...CCCTGGATGCTGCGTAGGCTCCCTCTGTTCCTCAGCGTGTCCTTCCCCACCGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
CDS-3UTR CCA 90 bp AGCGGTGGGGAAGGACACGCTGAGGAACAGAGGGAGCCTACGCAGCATCCAGGGAGCCAGACTGCAGCGTaGAGGAAGTCAGGAAGGTCG +
Preference number: 4 (lower is better)
Translates to: SGGEGHAEEQREPTQHPGSQTAA*RKSGRS
Trigger: CGACCTTCCTGACTTCCTCCACGCTGCAGTCTGGCT...CCCTGGATGCTGCGTAGGCTCCCTCTGTTCCTCAGCGTGTCCTTCCCCACCGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
CDS-3UTR CCA 90 bp GTTCACTGTCGCTGGCTCCACAGCGGAGCTCAGCAAACAGCAGTCCCTTTCCCGAGGATGTGGAGGAAGTaGCGGGGCTTGGGAGTGACG +
Preference number: 4 (lower is better)
Translates to: VHCRWLHSGAQQTAVPFPRMWRK*RGLGVT
Trigger: CGTCACTCCCAAGCCCCGCCACTTCCTCCACATCCT...CGGGAAAGGGACTGCTGTTTGCTGAGCTCCGCTGTGGAGCCAGCGACAGTGAAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
CDS-3UTR GCA 90 bp GTTCACTGTCGCTGGCTCCACAGCGGAGCTCAGCAAACAGCAGTCCCTTTCCCGCTAGGGAAGCCAGACTaGAGCGTGGAGGAAGTCAGG +
Preference number: 4 (lower is better)
Translates to: VHCRWLHSGAQQTAVPFPLGKPD*SVEEVR
Trigger: CCTGACTTCCTCCACGCTGCAGTCTGGCTTCCCTAG...CGGGAAAGGGACTGCTGTTTGCTGAGCTCCGCTGTGGAGCCAGCGACAGTGAAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
CDS-3UTR TCA 90 bp GCAGATCAGATACACTGGCGGGGCAGTTGTCTAACTGGACTGGACACAATAGTCACCTCCACTGGCGCTTaGGACCAGGGCGGGGAGAGC +
Preference number: 4 (lower is better)
Translates to: ADQIHWRGSCLTGLDTIVTSTGA*DQGGES
Trigger: GCTCTCCCCGCCCTGGTCTCAAGCGCCAGTGGAGGT...GACTATTGTGTCCAGTCCAGTTAGACAACTGCCCCGCCAGTGTATCTGATCTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR GCA 90 bp GTTCACTGTCGCTGGCTCCACAGCGGAGCTCAGCAAACAGCAGTCCCTTTCCCGGCTATGTCGCTGATGTaGAGCTCTGTGGGCTCTGTG +
Preference number: 4 (lower is better)
Translates to: VHCRWLHSGAQQTAVPFPAMSLM*SSVGSV
Trigger: CACAGAGCCCACAGAGCTGCACATCAGCGACATAGC...CGGGAAAGGGACTGCTGTTTGCTGAGCTCCGCTGTGGAGCCAGCGACAGTGAAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
CDS-3UTR CCA 90 bp TCTGCTGTCTCACCTTGGTATGGGGAAAACAGCCTGGCCTCCAGCCAGGCTTTTTCGGACAGGGCCTGGTaGTGCTGTGACCACAGCCCA +
Preference number: 4 (lower is better)
Translates to: SAVSPWYGENSLASSQAFSDRAW*CCDHSP
Trigger: TGGGCTGTGGTCACAGCACCACCAGGCCCTGTCCGA...AAAAGCCTGGCTGGAGGCCAGGCTGTTTTCCCCATACCAAGGTGAGACAGCAGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
CDS-3UTR TCA 90 bp ACCGAACAGAAAATGGAACTCACAGTTTGGGCTAACACAGGAAGAGGGCAGATCACCTCCACTGGCGCTTaGGACCAGGGCGGGGAGAGC +
Preference number: 4 (lower is better)
Translates to: TEQKMELTVWANTGRGQITSTGA*DQGGES
Trigger: GCTCTCCCCGCCCTGGTCTCAAGCGCCAGTGGAGGT...GATCTGCCCTCTTCCTGTGTTAGCCCAAACTGTGAGTTCCATTTTCTGTTCGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR GCA 90 bp CTAACAGCTTTAGTCCCAAGCACCGCCCTGCCTGAAGTGCGAGTGTCTGGGCACGAGAGCGAAGACAGATaGAGCAATGGCCACAGTCCT +
Preference number: 4 (lower is better)
Translates to: LTALVPSTALPEVRVSGHESEDR*SNGHSP
Trigger: AGGACTGTGGCCATTGCTGCATCTGTCTTCGCTCTC...GTGCCCAGACACTCGCACTTCAGGCAGGGCGGTGCTTGGGACTAAAGCTGTTAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
CDS-3UTR GCA 90 bp TCTGCTGTCTCACCTTGGTATGGGGAAAACAGCCTGGCCTCCAGCCAGGCTTTTGCATCTGCCGTCTCTTaGTTCACCTGGGGTAAGGCC +
Preference number: 4 (lower is better)
Translates to: SAVSPWYGENSLASSQAFASAVS*FTWGKA
Trigger: GGCCTTACCCCAGGTGAAGCAAGAGACGGCAGATGC...AAAAGCCTGGCTGGAGGCCAGGCTGTTTTCCCCATACCAAGGTGAGACAGCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
CDS-3UTR TCA 90 bp GCAGATCAGATACACTGGCGGGGCAGTTGTCTAACTGGACTGGACACAATAGTCGTGGAGTCTCTCTCCTaGCCTCACTTCGCTGCAGCC +
Preference number: 4 (lower is better)
Translates to: ADQIHWRGSCLTGLDTIVVESLS*PHFAAA
Trigger: GGCTGCAGCGAAGTGAGGTCAGGAGAGAGACTCCAC...GACTATTGTGTCCAGTCCAGTTAGACAACTGCCCCGCCAGTGTATCTGATCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR TCA 90 bp AAGCTCATCTCTTCTGAATCTTACCCACCTGCAAAAGTGCACAATCCCAGTGTGACCTCCACTGGCGCTTaGGACCAGGGCGGGGAGAGC +
Preference number: 4 (lower is better)
Translates to: KLISSESYPPAKVHNPSVTSTGA*DQGGES
Trigger: GCTCTCCCCGCCCTGGTCTCAAGCGCCAGTGGAGGT...CACACTGGGATTGTGCACTTTTGCAGGTGGGTAAGATTCAGAAGAGATGAGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
CDS-3UTR TCA 90 bp AGTCCAGATACTCCATTCTTGAGTGTCAGGATCCCAGGCAAAACTGGCAATACAACCTCCACTGGCGCTTaGGACCAGGGCGGGGAGAGC +
Preference number: 4 (lower is better)
Translates to: SPDTPFLSVRIPGKTGNTTSTGA*DQGGES
Trigger: GCTCTCCCCGCCCTGGTCTCAAGCGCCAGTGGAGGT...TGTATTGCCAGTTTTGCCTGGGATCCTGACACTCAAGAATGGAGTATCTGGACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR GCA 90 bp GCACCGAACAGAAAATGGAACTCACAGTTTGGGCTAACACAGGAAGAGGGCAGACACAGGCCCCACACTTaGGGTTCTGCCGCTGGTTCG +
Preference number: 4 (lower is better)
Translates to: APNRKWNSQFGLTQEEGRHRPHT*GSAAGS
Trigger: CGAACCAGCGGCAGAACCGCAAGTGTGGGGCCTGTG...TCTGCCCTCTTCCTGTGTTAGCCCAAACTGTGAGTTCCATTTTCTGTTCGGTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000224047.2
CDS-3UTR CCA 90 bp GCAGATCAGATACACTGGCGGGGCAGTTGTCTAACTGGACTGGACACAATAGTCACCCTGACCCAGCACTaGGCAGCAGCCGCTTTAGCT +
Preference number: 4 (lower is better)
Translates to: ADQIHWRGSCLTGLDTIVTLTQH*AAAALA
Trigger: AGCTAAAGCGGCTGCTGCCCAGTGCTGGGTCAGGGT...GACTATTGTGTCCAGTCCAGTTAGACAACTGCCCCGCCAGTGTATCTGATCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097530.5
ENSMUST00000239157.2
CDS-3UTR CCA 90 bp TCTGCTGTCTCACCTTGGTATGGGGAAAACAGCCTGGCCTCCAGCCAGGCTTTTTGCTGTCCACTCCTCTaGAGCATCTGCCGTCTCTTG +
Preference number: 4 (lower is better)
Translates to: SAVSPWYGENSLASSQAFCCPLL*SICRLL
Trigger: CAAGAGACGGCAGATGCTCCAGAGGAGTGGACAGCA...AAAAGCCTGGCTGGAGGCCAGGCTGTTTTCCCCATACCAAGGTGAGACAGCAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
CDS-3UTR CCA 90 bp GCAGATCAGATACACTGGCGGGGCAGTTGTCTAACTGGACTGGACACAATAGTCCGCCAACGACACTTCTaGCGCTTCTGGTTGCCACCC +
Preference number: 4 (lower is better)
Translates to: ADQIHWRGSCLTGLDTIVRQRHF*RFWLPP
Trigger: GGGTGGCAACCAGAAGCGCCAGAAGTGTCGTTGGCG...GACTATTGTGTCCAGTCCAGTTAGACAACTGCCCCGCCAGTGTATCTGATCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224047.2
CDS-3UTR TCA 90 bp GCAGATCAGATACACTGGCGGGGCAGTTGTCTAACTGGACTGGACACAATAGTCGGGACAGCCAAGGGATaGGTCTTGGGAATGGGATGG +
Preference number: 4 (lower is better)
Translates to: ADQIHWRGSCLTGLDTIVGTAKG*VLGMGW
Trigger: CCATCCCATTCCCAAGACTCATCCCTTGGCTGTCCC...GACTATTGTGTCCAGTCCAGTTAGACAACTGCCCCGCCAGTGTATCTGATCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR GCA 90 bp GCAGATCAGATACACTGGCGGGGCAGTTGTCTAACTGGACTGGACACAATAGTCACATCACTGGGCAGTTaGAGGCGACAGGTGGAGCAC +
Preference number: 4 (lower is better)
Translates to: ADQIHWRGSCLTGLDTIVTSLGS*RRQVEH
Trigger: GTGCTCCACCTGTCGCCTGCAACTGCCCAGTGATGT...GACTATTGTGTCCAGTCCAGTTAGACAACTGCCCCGCCAGTGTATCTGATCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR GCA 90 bp GCAGATCAGATACACTGGCGGGGCAGTTGTCTAACTGGACTGGACACAATAGTCTGCAAGCTGCAGCAGTaGCAGGCATCTGCATGGCAC +
Preference number: 4 (lower is better)
Translates to: ADQIHWRGSCLTGLDTIVCKLQQ*QASAWH
Trigger: GTGCCATGCAGATGCCTGGCACTGCTGCAGCTTGCA...GACTATTGTGTCCAGTCCAGTTAGACAACTGCCCCGCCAGTGTATCTGATCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR GCA 90 bp GCAGATCAGATACACTGGCGGGGCAGTTGTCTAACTGGACTGGACACAATAGTCGCATCTGCCGTCTCTTaGTTCACCTGGGGTAAGGCC +
Preference number: 4 (lower is better)
Translates to: ADQIHWRGSCLTGLDTIVASAVS*FTWGKA
Trigger: GGCCTTACCCCAGGTGAAGCAAGAGACGGCAGATGC...GACTATTGTGTCCAGTCCAGTTAGACAACTGCCCCGCCAGTGTATCTGATCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR GCA 90 bp GCAGATCAGATACACTGGCGGGGCAGTTGTCTAACTGGACTGGACACAATAGTCCTAGGGAAGCCAGACTaGAGCGTGGAGGAAGTCAGG +
Preference number: 4 (lower is better)
Translates to: ADQIHWRGSCLTGLDTIVLGKPD*SVEEVR
Trigger: CCTGACTTCCTCCACGCTGCAGTCTGGCTTCCCTAG...GACTATTGTGTCCAGTCCAGTTAGACAACTGCCCCGCCAGTGTATCTGATCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CCA 90 bp AGATCAGATACACTGGCGGGGCAGTTGTCTAACTGGACTGGACACAATAGTCTGAGGATGTGGAGGAAGTaGCGGGGCTTGGGAGTGACG +
Preference number: 4 (lower is better)
Translates to: RSDTLAGQLSNWTGHNSLRMWRK*RGLGVT
Trigger: CGTCACTCCCAAGCCCCGCCACTTCCTCCACATCCT...CAGACTATTGTGTCCAGTCCAGTTAGACAACTGCCCCGCCAGTGTATCTGATCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CCA 90 bp GGCATTTTAAGAATGGGAAATGAGGTAAGGCTGAGCCAAGACTGGTCCTCGGGTACCCTGACCCAGCACTaGGCAGCAGCCGCTTTAGCT +
Preference number: 4 (lower is better)
Translates to: GILRMGNEVRLSQDWSSGTLTQH*AAAALA
Trigger: AGCTAAAGCGGCTGCTGCCCAGTGCTGGGTCAGGGT...ACCCGAGGACCAGTCTTGGCTCAGCCTTACCTCATTTCCCATTCTTAAAATGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
CDS-3UTR CCA 90 bp GCACCGAACAGAAAATGGAACTCACAGTTTGGGCTAACACAGGAAGAGGGCAGAACCCTGACCCAGCACTaGGCAGCAGCCGCTTTAGCT +
Preference number: 4 (lower is better)
Translates to: APNRKWNSQFGLTQEEGRTLTQH*AAAALA
Trigger: AGCTAAAGCGGCTGCTGCCCAGTGCTGGGTCAGGGT...TCTGCCCTCTTCCTGTGTTAGCCCAAACTGTGAGTTCCATTTTCTGTTCGGTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097530.5
ENSMUST00000239157.2
CDS-3UTR CCA 90 bp TCTCCCTACTGCACCGAACAGAAAATGGAACTCACAGTTTGGGCTAACACAGGATCGGACAGGGCCTGGTaGTGCTGTGACCACAGCCCA +
Preference number: 4 (lower is better)
Translates to: SPYCTEQKMELTVWANTGSDRAW*CCDHSP
Trigger: TGGGCTGTGGTCACAGCACCACCAGGCCCTGTCCGA...TCCTGTGTTAGCCCAAACTGTGAGTTCCATTTTCTGTTCGGTGCAGTAGGGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CCA 90 bp CTGAGATCCTCGGAGGAGCAGATGTGCTGCCAGCCTTCTACTCTCTTTCTCTTCTGCCAGGCATCTGCATaGCACTGCTGGTACCCTCTT +
Preference number: 4 (lower is better)
Translates to: LRSSEEQMCCQPSTLFLFCQASA*HCWYPL
Trigger: AAGAGGGTACCAGCAGTGCCATGCAGATGCCTGGCA...GAAGAGAAAGAGAGTAGAAGGCTGGCAGCACATCTGCTCCTCCGAGGATCTCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
CDS-3UTR CCA 90 bp GCACCGAACAGAAAATGGAACTCACAGTTTGGGCTAACACAGGAAGAGGGCAGACTGGGCCGCCTGTACTaGGACTTCTGTGCAAGCTGC +
Preference number: 4 (lower is better)
Translates to: APNRKWNSQFGLTQEEGRLGRLY*DFCASC
Trigger: GCAGCTTGCACAGAAGTCCCAGTACAGGCGGCCCAG...TCTGCCCTCTTCCTGTGTTAGCCCAAACTGTGAGTTCCATTTTCTGTTCGGTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CCA 90 bp GACAGCAGAGCTGGGACAAAGCTAATACATGGGGTACACAGGACACACATATGGCTGGGCCGCCTGTACTaGGACTTCTGTGCAAGCTGC +
Preference number: 4 (lower is better)
Translates to: DSRAGTKLIHGVHRTHIWLGRLY*DFCASC
Trigger: GCAGCTTGCACAGAAGTCCCAGTACAGGCGGCCCAG...CCATATGTGTGTCCTGTGTACCCCATGTATTAGCTTTGTCCCAGCTCTGCTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
3UTR CAA 72 bp AGTTCATACACTCTGTCACTAGTCTGCTGTCTCACCTaGGTATGGGGAAAACAGCCTGGCCTCCAGCCAGGC +
Preference number: 4 (lower is better)
Translates to: SSYTLSLVCCLT*VWGKQPGLQPG
Trigger: GCCTGGCTGGAGGCCAGGCTGTTTTCCCCATACCAAGGTGAGACAGCAGACTAGTGACAGAGTGTATGAACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
CDS-3UTR TCA 90 bp AGATCAGATACACTGGCGGGGCAGTTGTCTAACTGGACTGGACACAATAGTCTGCTTGCAGTAAAGCCCTaGGGCCACATCACTGGGCAG +
Preference number: 4 (lower is better)
Translates to: RSDTLAGQLSNWTGHNSLLAVKP*GHITGQ
Trigger: CTGCCCAGTGATGTGGCCTCAGGGCTTTACTGCAAG...CAGACTATTGTGTCCAGTCCAGTTAGACAACTGCCCCGCCAGTGTATCTGATCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR TCA 90 bp GCACCGAACAGAAAATGGAACTCACAGTTTGGGCTAACACAGGAAGAGGGCAGACTTGCAGTAAAGCCCTaGGGCCACATCACTGGGCAG +
Preference number: 4 (lower is better)
Translates to: APNRKWNSQFGLTQEEGRLAVKP*GHITGQ
Trigger: CTGCCCAGTGATGTGGCCTCAGGGCTTTACTGCAAG...TCTGCCCTCTTCCTGTGTTAGCCCAAACTGTGAGTTCCATTTTCTGTTCGGTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR TCA 90 bp CTAACAGCTTTAGTCCCAAGCACCGCCCTGCCTGAAGTGCGAGTGTCTGGGCACCTACACAGTAATAGATaGACTCAGCAGGTGATGTGG +
Preference number: 4 (lower is better)
Translates to: LTALVPSTALPEVRVSGHLHSNR*TQQVMW
Trigger: CCACATCACCTGCTGAGTTCATCTATTACTGTGTAG...GTGCCCAGACACTCGCACTTCAGGCAGGGCGGTGCTTGGGACTAAAGCTGTTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
CDS-3UTR TCA 90 bp GCAGATCAGATACACTGGCGGGGCAGTTGTCTAACTGGACTGGACACAATAGTCTGCTTGCTGCTTTCTTaGATCTCGGACAGGGCCTGG +
Preference number: 4 (lower is better)
Translates to: ADQIHWRGSCLTGLDTIVCLLLS*ISDRAW
Trigger: CCAGGCCCTGTCCGAGATTCAAGAAAGCAGCAAGCA...GACTATTGTGTCCAGTCCAGTTAGACAACTGCCCCGCCAGTGTATCTGATCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR TCA 90 bp GCAGATCAGATACACTGGCGGGGCAGTTGTCTAACTGGACTGGACACAATAGTCAAGTCAGGAAGGTCGTaGCTGCTGTCCACTCCTCTG +
Preference number: 4 (lower is better)
Translates to: ADQIHWRGSCLTGLDTIVKSGRS*LLSTPL
Trigger: CAGAGGAGTGGACAGCAGTCACGACCTTCCTGACTT...GACTATTGTGTCCAGTCCAGTTAGACAACTGCCCCGCCAGTGTATCTGATCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR GCA 90 bp AGACCACGGTGGCAGAGCTCTGTCTGTGAGAGGGATCCAGATCTGCATTACCTAAGACGCAGATGCAGATaGAGATGCAGACGAAGACGC +
Preference number: 4 (lower is better)
Translates to: RPRWQSSVCERDPDLHYLRRRCR*RCRRRR
Trigger: GCGTCTTCGTCTGCATCTGCATCTGCATCTGCGTCT...TAGGTAATGCAGATCTGGATCCCTCTCACAGACAGAGCTCTGCCACCGTGGTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
CDS-3UTR GCA 90 bp GCACCGAACAGAAAATGGAACTCACAGTTTGGGCTAACACAGGAAGAGGGCAGATGCAAGCTGCAGCAGTaGCAGGCATCTGCATGGCAC +
Preference number: 4 (lower is better)
Translates to: APNRKWNSQFGLTQEEGRCKLQQ*QASAWH
Trigger: GTGCCATGCAGATGCCTGGCACTGCTGCAGCTTGCA...TCTGCCCTCTTCCTGTGTTAGCCCAAACTGTGAGTTCCATTTTCTGTTCGGTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR GCA 90 bp GCAGATCAGATACACTGGCGGGGCAGTTGTCTAACTGGACTGGACACAATAGTCGTACTGGGACTTCTGTaGAAGCTGCAGCAGTGCCAG +
Preference number: 4 (lower is better)
Translates to: ADQIHWRGSCLTGLDTIVVLGLL*KLQQCQ
Trigger: CTGGCACTGCTGCAGCTTGCACAGAAGTCCCAGTAC...GACTATTGTGTCCAGTCCAGTTAGACAACTGCCCCGCCAGTGTATCTGATCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR GCA 90 bp AGATCAGATACACTGGCGGGGCAGTTGTCTAACTGGACTGGACACAATAGTCTGCAGGAAGGTCGTGACTaGTGTCCACTCCTCTGGAGC +
Preference number: 4 (lower is better)
Translates to: RSDTLAGQLSNWTGHNSLQEGRD*CPLLWS
Trigger: GCTCCAGAGGAGTGGACAGCAGTCACGACCTTCCTG...CAGACTATTGTGTCCAGTCCAGTTAGACAACTGCCCCGCCAGTGTATCTGATCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CCA 90 bp TCTCCCTACTGCACCGAACAGAAAATGGAACTCACAGTTTGGGCTAACACAGGACTGAGGCCACATCACTaGGCAGTTGCAGGCGACAGG +
Preference number: 4 (lower is better)
Translates to: SPYCTEQKMELTVWANTGLRPHH*AVAGDR
Trigger: CCTGTCGCCTGCAACTGCCCAGTGATGTGGCCTCAG...TCCTGTGTTAGCCCAAACTGTGAGTTCCATTTTCTGTTCGGTGCAGTAGGGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CCA 90 bp ACCGAACAGAAAATGGAACTCACAGTTTGGGCTAACACAGGAAGAGGGCAGATCTGCAAACACCTCCACTaGCGCTTGAGACCAGGGCGG +
Preference number: 4 (lower is better)
Translates to: TEQKMELTVWANTGRGQICKHLH*RLRPGR
Trigger: CCGCCCTGGTCTCAAGCGCCAGTGGAGGTGTTTGCA...GATCTGCCCTCTTCCTGTGTTAGCCCAAACTGTGAGTTCCATTTTCTGTTCGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CCA 90 bp ATCAGAAGTCCAGATACTCCATTCTTGAGTGTCAGGATCCCAGGCAAAACTGGCAGGATGTGGAGGAAGTaGCGGGGCTTGGGAGTGACG +
Preference number: 4 (lower is better)
Translates to: IRSPDTPFLSVRIPGKTGRMWRK*RGLGVT
Trigger: CGTCACTCCCAAGCCCCGCCACTTCCTCCACATCCT...GCCAGTTTTGCCTGGGATCCTGACACTCAAGAATGGAGTATCTGGACTTCTGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CCA 90 bp AGTCCAGATACTCCATTCTTGAGTGTCAGGATCCCAGGCAAAACTGGCAATACATCGGACAGGGCCTGGTaGTGCTGTGACCACAGCCCA +
Preference number: 4 (lower is better)
Translates to: SPDTPFLSVRIPGKTGNTSDRAW*CCDHSP
Trigger: TGGGCTGTGGTCACAGCACCACCAGGCCCTGTCCGA...TGTATTGCCAGTTTTGCCTGGGATCCTGACACTCAAGAATGGAGTATCTGGACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CCA 90 bp ATCAGAAGTCCAGATACTCCATTCTTGAGTGTCAGGATCCCAGGCAAAACTGGCCTGGGCCGCCTGTACTaGGACTTCTGTGCAAGCTGC +
Preference number: 4 (lower is better)
Translates to: IRSPDTPFLSVRIPGKTGLGRLY*DFCASC
Trigger: GCAGCTTGCACAGAAGTCCCAGTACAGGCGGCCCAG...GCCAGTTTTGCCTGGGATCCTGACACTCAAGAATGGAGTATCTGGACTTCTGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR TCA 90 bp GCAGATCAGATACACTGGCGGGGCAGTTGTCTAACTGGACTGGACACAATAGTCTTCTCTGTTCGCGGTTaGAGGCGATTCTCTGTGCTC +
Preference number: 4 (lower is better)
Translates to: ADQIHWRGSCLTGLDTIVFSVRG*RRFSVL
Trigger: GAGCACAGAGAATCGCCTTCAACCGCGAACAGAGAA...GACTATTGTGTCCAGTCCAGTTAGACAACTGCCCCGCCAGTGTATCTGATCTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR TCA 90 bp ATCAGAAGTCCAGATACTCCATTCTTGAGTGTCAGGATCCCAGGCAAAACTGGCCTTGCAGTAAAGCCCTaGGGCCACATCACTGGGCAG +
Preference number: 4 (lower is better)
Translates to: IRSPDTPFLSVRIPGKTGLAVKP*GHITGQ
Trigger: CTGCCCAGTGATGTGGCCTCAGGGCTTTACTGCAAG...GCCAGTTTTGCCTGGGATCCTGACACTCAAGAATGGAGTATCTGGACTTCTGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR TCA 90 bp AGATCAGATACACTGGCGGGGCAGTTGTCTAACTGGACTGGACACAATAGTCTGTGCTTGCTGCTTTCTTaGATCTCGGACAGGGCCTGG +
Preference number: 4 (lower is better)
Translates to: RSDTLAGQLSNWTGHNSLCLLLS*ISDRAW
Trigger: CCAGGCCCTGTCCGAGATTCAAGAAAGCAGCAAGCA...CAGACTATTGTGTCCAGTCCAGTTAGACAACTGCCCCGCCAGTGTATCTGATCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR TCA 90 bp GACAGCAGAGCTGGGACAAAGCTAATACATGGGGTACACAGGACACACATATGGTGCTTGCTGCTTTCTTaGATCTCGGACAGGGCCTGG +
Preference number: 4 (lower is better)
Translates to: DSRAGTKLIHGVHRTHIWCLLLS*ISDRAW
Trigger: CCAGGCCCTGTCCGAGATTCAAGAAAGCAGCAAGCA...CCATATGTGTGTCCTGTGTACCCCATGTATTAGCTTTGTCCCAGCTCTGCTGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
CDS-3UTR GCA 90 bp AGATCAGATACACTGGCGGGGCAGTTGTCTAACTGGACTGGACACAATAGTCTGCTGACCTCACTTCGCTaGAGCCCAACCTGCTGTTTC +
Preference number: 4 (lower is better)
Translates to: RSDTLAGQLSNWTGHNSLLTSLR*SPTCCF
Trigger: GAAACAGCAGGTTGGGCTGCAGCGAAGTGAGGTCAG...CAGACTATTGTGTCCAGTCCAGTTAGACAACTGCCCCGCCAGTGTATCTGATCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR GCA 90 bp ACTGAGATCCTCGGAGGAGCAGATGTGCTGCCAGCCTTCTACTCTCTTTCTCTTAGACGAAGACGCAGATaGAGATGCAGACGAAGACGC +
Preference number: 4 (lower is better)
Translates to: TEILGGADVLPAFYSLSLRRRRR*RCRRRR
Trigger: GCGTCTTCGTCTGCATCTGCATCTGCGTCTTCGTCT...AAGAGAAAGAGAGTAGAAGGCTGGCAGCACATCTGCTCCTCCGAGGATCTCAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
CDS-3UTR GCA 90 bp GCAGATCAGATACACTGGCGGGGCAGTTGTCTAACTGGACTGGACACAATAGTCAGACGCAGATGCAGATaGAGATGCAGACGAAGACGC +
Preference number: 4 (lower is better)
Translates to: ADQIHWRGSCLTGLDTIVRRRCR*RCRRRR
Trigger: GCGTCTTCGTCTGCATCTGCATCTGCATCTGCGTCT...GACTATTGTGTCCAGTCCAGTTAGACAACTGCCCCGCCAGTGTATCTGATCTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR GCA 90 bp ATCAGAAGTCCAGATACTCCATTCTTGAGTGTCAGGATCCCAGGCAAAACTGGCACATCACTGGGCAGTTaGAGGCGACAGGTGGAGCAC +
Preference number: 4 (lower is better)
Translates to: IRSPDTPFLSVRIPGKTGTSLGS*RRQVEH
Trigger: GTGCTCCACCTGTCGCCTGCAACTGCCCAGTGATGT...GCCAGTTTTGCCTGGGATCCTGACACTCAAGAATGGAGTATCTGGACTTCTGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR GCA 90 bp ACCGAACAGAAAATGGAACTCACAGTTTGGGCTAACACAGGAAGAGGGCAGATCACATCACTGGGCAGTTaGAGGCGACAGGTGGAGCAC +
Preference number: 4 (lower is better)
Translates to: TEQKMELTVWANTGRGQITSLGS*RRQVEH
Trigger: GTGCTCCACCTGTCGCCTGCAACTGCCCAGTGATGT...GATCTGCCCTCTTCCTGTGTTAGCCCAAACTGTGAGTTCCATTTTCTGTTCGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR GCA 90 bp GCAGATCAGATACACTGGCGGGGCAGTTGTCTAACTGGACTGGACACAATAGTCGAGAGCGAAGACAGATaGAGCAATGGCCACAGTCCT +
Preference number: 4 (lower is better)
Translates to: ADQIHWRGSCLTGLDTIVESEDR*SNGHSP
Trigger: AGGACTGTGGCCATTGCTGCATCTGTCTTCGCTCTC...GACTATTGTGTCCAGTCCAGTTAGACAACTGCCCCGCCAGTGTATCTGATCTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR GCA 90 bp GGCATTTTAAGAATGGGAAATGAGGTAAGGCTGAGCCAAGACTGGTCCTCGGGTGTACTGGGACTTCTGTaGAAGCTGCAGCAGTGCCAG +
Preference number: 4 (lower is better)
Translates to: GILRMGNEVRLSQDWSSGVLGLL*KLQQCQ
Trigger: CTGGCACTGCTGCAGCTTGCACAGAAGTCCCAGTAC...ACCCGAGGACCAGTCTTGGCTCAGCCTTACCTCATTTCCCATTCTTAAAATGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
CDS-3UTR CCA 90 bp GAGACGCTGCATGGATTCCAGGCCATCTTCTTGAATTCCAACTCTTGTTTCAAGCTGAGGCCACATCACTaGGCAGTTGCAGGCGACAGG +
Preference number: 4 (lower is better)
Translates to: ETLHGFQAIFLNSNSCFKLRPHH*AVAGDR
Trigger: CCTGTCGCCTGCAACTGCCCAGTGATGTGGCCTCAG...CTTGAAACAAGAGTTGGAATTCAAGAAGATGGCCTGGAATCCATGCAGCGTCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
CDS-3UTR CCA 90 bp GCAGATCAGATACACTGGCGGGGCAGTTGTCTAACTGGACTGGACACAATAGTCAGACAGATGCAGCAATaGCCACAGTCCTCTTGGGTC +
Preference number: 4 (lower is better)
Translates to: ADQIHWRGSCLTGLDTIVRQMQQ*PQSSWV
Trigger: GACCCAAGAGGACTGTGGCCATTGCTGCATCTGTCT...GACTATTGTGTCCAGTCCAGTTAGACAACTGCCCCGCCAGTGTATCTGATCTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CCA 90 bp AAGCTCATCTCTTCTGAATCTTACCCACCTGCAAAAGTGCACAATCCCAGTGTGTGCAAACACCTCCACTaGCGCTTGAGACCAGGGCGG +
Preference number: 4 (lower is better)
Translates to: KLISSESYPPAKVHNPSVCKHLH*RLRPGR
Trigger: CCGCCCTGGTCTCAAGCGCCAGTGGAGGTGTTTGCA...CACACTGGGATTGTGCACTTTTGCAGGTGGGTAAGATTCAGAAGAGATGAGCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
CDS-3UTR CCA 90 bp GGCATTTTAAGAATGGGAAATGAGGTAAGGCTGAGCCAAGACTGGTCCTCGGGTGTCTCTTGCTTCACCTaGGGTAAGGCCACAACCCAG +
Preference number: 4 (lower is better)
Translates to: GILRMGNEVRLSQDWSSGVSCFT*GKATTQ
Trigger: CTGGGTTGTGGCCTTACCCCAGGTGAAGCAAGAGAC...ACCCGAGGACCAGTCTTGGCTCAGCCTTACCTCATTTCCCATTCTTAAAATGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
CDS-3UTR CCA 90 bp AGATCAGATACACTGGCGGGGCAGTTGTCTAACTGGACTGGACACAATAGTCTGTGCTGTCCACTCCTCTaGAGCATCTGCCGTCTCTTG +
Preference number: 4 (lower is better)
Translates to: RSDTLAGQLSNWTGHNSLCCPLL*SICRLL
Trigger: CAAGAGACGGCAGATGCTCCAGAGGAGTGGACAGCA...CAGACTATTGTGTCCAGTCCAGTTAGACAACTGCCCCGCCAGTGTATCTGATCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CCA 90 bp AGATCAGATACACTGGCGGGGCAGTTGTCTAACTGGACTGGACACAATAGTCTGTGCCACCCCCGAATTTaGGCTTGTCGCAGCAGAAGT +
Preference number: 4 (lower is better)
Translates to: RSDTLAGQLSNWTGHNSLCHPRI*ACRSRS
Trigger: ACTTCTGCTGCGACAAGCCCAAATTCGGGGGTGGCA...CAGACTATTGTGTCCAGTCCAGTTAGACAACTGCCCCGCCAGTGTATCTGATCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000224047.2
CDS-3UTR TCA 90 bp AGTCCAGATACTCCATTCTTGAGTGTCAGGATCCCAGGCAAAACTGGCAATACAGGGACAGCCAAGGGATaGGTCTTGGGAATGGGATGG +
Preference number: 4 (lower is better)
Translates to: SPDTPFLSVRIPGKTGNTGTAKG*VLGMGW
Trigger: CCATCCCATTCCCAAGACTCATCCCTTGGCTGTCCC...TGTATTGCCAGTTTTGCCTGGGATCCTGACACTCAAGAATGGAGTATCTGGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR TCA 90 bp AACAGAAAATGGAACTCACAGTTTGGGCTAACACAGGAAGAGGGCAGATCAGATGTGGAGTCTCTCTCCTaGCCTCACTTCGCTGCAGCC +
Preference number: 4 (lower is better)
Translates to: NRKWNSQFGLTQEEGRSDVESLS*PHFAAA
Trigger: GGCTGCAGCGAAGTGAGGTCAGGAGAGAGACTCCAC...ATCTGATCTGCCCTCTTCCTGTGTTAGCCCAAACTGTGAGTTCCATTTTCTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR TCA 90 bp AGATCAGATACACTGGCGGGGCAGTTGTCTAACTGGACTGGACACAATAGTCTGTTCTCTGTTCGCGGTTaGAGGCGATTCTCTGTGCTC +
Preference number: 4 (lower is better)
Translates to: RSDTLAGQLSNWTGHNSLFSVRG*RRFSVL
Trigger: GAGCACAGAGAATCGCCTTCAACCGCGAACAGAGAA...CAGACTATTGTGTCCAGTCCAGTTAGACAACTGCCCCGCCAGTGTATCTGATCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR TCA 90 bp GACAGCAGAGCTGGGACAAAGCTAATACATGGGGTACACAGGACACACATATGGTTCTCTGTTCGCGGTTaGAGGCGATTCTCTGTGCTC +
Preference number: 4 (lower is better)
Translates to: DSRAGTKLIHGVHRTHIWFSVRG*RRFSVL
Trigger: GAGCACAGAGAATCGCCTTCAACCGCGAACAGAGAA...CCATATGTGTGTCCTGTGTACCCCATGTATTAGCTTTGTCCCAGCTCTGCTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
CDS-3UTR GCA 90 bp GCACCGAACAGAAAATGGAACTCACAGTTTGGGCTAACACAGGAAGAGGGCAGACGCTGCAGCCCAACCTaGTGTTTCTTAGTCTTGGCT +
Preference number: 4 (lower is better)
Translates to: APNRKWNSQFGLTQEEGRRCSPT*CFLVLA
Trigger: AGCCAAGACTAAGAAACAGCAGGTTGGGCTGCAGCG...TCTGCCCTCTTCCTGTGTTAGCCCAAACTGTGAGTTCCATTTTCTGTTCGGTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR GCA 90 bp AGATCAGATACACTGGCGGGGCAGTTGTCTAACTGGACTGGACACAATAGTCTGAGACGCAGATGCAGATaGAGATGCAGACGAAGACGC +
Preference number: 4 (lower is better)
Translates to: RSDTLAGQLSNWTGHNSLRRRCR*RCRRRR
Trigger: GCGTCTTCGTCTGCATCTGCATCTGCATCTGCGTCT...CAGACTATTGTGTCCAGTCCAGTTAGACAACTGCCCCGCCAGTGTATCTGATCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR GCA 90 bp AGTCCAGATACTCCATTCTTGAGTGTCAGGATCCCAGGCAAAACTGGCAATACATTTCACCAGGCAAGCTaGACAGTCCCCACAGCCGAC +
Preference number: 4 (lower is better)
Translates to: SPDTPFLSVRIPGKTGNTFHQAS*TVPTAD
Trigger: GTCGGCTGTGGGGACTGTGCAGCTTGCCTGGTGAAA...TGTATTGCCAGTTTTGCCTGGGATCCTGACACTCAAGAATGGAGTATCTGGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR GCA 90 bp AAGCTCATCTCTTCTGAATCTTACCCACCTGCAAAAGTGCACAATCCCAGTGTGTTTCACCAGGCAAGCTaGACAGTCCCCACAGCCGAC +
Preference number: 4 (lower is better)
Translates to: KLISSESYPPAKVHNPSVFHQAS*TVPTAD
Trigger: GTCGGCTGTGGGGACTGTGCAGCTTGCCTGGTGAAA...CACACTGGGATTGTGCACTTTTGCAGGTGGGTAAGATTCAGAAGAGATGAGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
CDS-3UTR GCA 90 bp AAGCTCATCTCTTCTGAATCTTACCCACCTGCAAAAGTGCACAATCCCAGTGTGTGCAAGCTGCAGCAGTaGCAGGCATCTGCATGGCAC +
Preference number: 4 (lower is better)
Translates to: KLISSESYPPAKVHNPSVCKLQQ*QASAWH
Trigger: GTGCCATGCAGATGCCTGGCACTGCTGCAGCTTGCA...CACACTGGGATTGTGCACTTTTGCAGGTGGGTAAGATTCAGAAGAGATGAGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
CDS-3UTR GCA 90 bp AGTCCAGATACTCCATTCTTGAGTGTCAGGATCCCAGGCAAAACTGGCAATACATGCAAGCTGCAGCAGTaGCAGGCATCTGCATGGCAC +
Preference number: 4 (lower is better)
Translates to: SPDTPFLSVRIPGKTGNTCKLQQ*QASAWH
Trigger: GTGCCATGCAGATGCCTGGCACTGCTGCAGCTTGCA...TGTATTGCCAGTTTTGCCTGGGATCCTGACACTCAAGAATGGAGTATCTGGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR GCA 90 bp ATAAATTCACTCAGCCTCCTAACAAACCTTTGGGCTGAGGGCAGGAAACAAGCACAGGAAGGTCGTGACTaGTGTCCACTCCTCTGGAGC +
Preference number: 4 (lower is better)
Translates to: INSLSLLTNLWAEGRKQAQEGRD*CPLLWS
Trigger: GCTCCAGAGGAGTGGACAGCAGTCACGACCTTCCTG...TGCTTGTTTCCTGCCCTCAGCCCAAAGGTTTGTTAGGAGGCTGAGTGAATTTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
CDS-3UTR CCA 90 bp GCAGATCAGATACACTGGCGGGGCAGTTGTCTAACTGGACTGGACACAATAGTCCTTATATTCCCCCTGTaGAGTCTCTCTCCTGACCTC +
Preference number: 4 (lower is better)
Translates to: ADQIHWRGSCLTGLDTIVLIFPL*SLSPDL
Trigger: GAGGTCAGGAGAGAGACTCCACAGGGGGAATATAAG...GACTATTGTGTCCAGTCCAGTTAGACAACTGCCCCGCCAGTGTATCTGATCTGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CCA 90 bp AACAGAAAATGGAACTCACAGTTTGGGCTAACACAGGAAGAGGGCAGATCAGATCTGAGGCCACATCACTaGGCAGTTGCAGGCGACAGG +
Preference number: 4 (lower is better)
Translates to: NRKWNSQFGLTQEEGRSDLRPHH*AVAGDR
Trigger: CCTGTCGCCTGCAACTGCCCAGTGATGTGGCCTCAG...ATCTGATCTGCCCTCTTCCTGTGTTAGCCCAAACTGTGAGTTCCATTTTCTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CCA 90 bp GACAGCAGAGCTGGGACAAAGCTAATACATGGGGTACACAGGACACACATATGGAGACAGATGCAGCAATaGCCACAGTCCTCTTGGGTC +
Preference number: 4 (lower is better)
Translates to: DSRAGTKLIHGVHRTHIWRQMQQ*PQSSWV
Trigger: GACCCAAGAGGACTGTGGCCATTGCTGCATCTGTCT...CCATATGTGTGTCCTGTGTACCCCATGTATTAGCTTTGTCCCAGCTCTGCTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
CDS-3UTR CCA 90 bp AACAGAAAATGGAACTCACAGTTTGGGCTAACACAGGAAGAGGGCAGATCAGATTGCAAACACCTCCACTaGCGCTTGAGACCAGGGCGG +
Preference number: 4 (lower is better)
Translates to: NRKWNSQFGLTQEEGRSDCKHLH*RLRPGR
Trigger: CCGCCCTGGTCTCAAGCGCCAGTGGAGGTGTTTGCA...ATCTGATCTGCCCTCTTCCTGTGTTAGCCCAAACTGTGAGTTCCATTTTCTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CCA 90 bp ATCAGAAGTCCAGATACTCCATTCTTGAGTGTCAGGATCCCAGGCAAAACTGGCTGCCAGGCATCTGCATaGCACTGCTGGTACCCTCTT +
Preference number: 4 (lower is better)
Translates to: IRSPDTPFLSVRIPGKTGCQASA*HCWYPL
Trigger: AAGAGGGTACCAGCAGTGCCATGCAGATGCCTGGCA...GCCAGTTTTGCCTGGGATCCTGACACTCAAGAATGGAGTATCTGGACTTCTGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CCA 90 bp AACAGAAAATGGAACTCACAGTTTGGGCTAACACAGGAAGAGGGCAGATCAGATCTGGGCCGCCTGTACTaGGACTTCTGTGCAAGCTGC +
Preference number: 4 (lower is better)
Translates to: NRKWNSQFGLTQEEGRSDLGRLY*DFCASC
Trigger: GCAGCTTGCACAGAAGTCCCAGTACAGGCGGCCCAG...ATCTGATCTGCCCTCTTCCTGTGTTAGCCCAAACTGTGAGTTCCATTTTCTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CCA 90 bp TCTCCCTACTGCACCGAACAGAAAATGGAACTCACAGTTTGGGCTAACACAGGAGTCTCTTGCTTCACCTaGGGTAAGGCCACAACCCAG +
Preference number: 4 (lower is better)
Translates to: SPYCTEQKMELTVWANTGVSCFT*GKATTQ
Trigger: CTGGGTTGTGGCCTTACCCCAGGTGAAGCAAGAGAC...TCCTGTGTTAGCCCAAACTGTGAGTTCCATTTTCTGTTCGGTGCAGTAGGGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CCA 90 bp AGTCCAGATACTCCATTCTTGAGTGTCAGGATCCCAGGCAAAACTGGCAATACAAGCCAGACTGCAGCGTaGAGGAAGTCAGGAAGGTCG +
Preference number: 4 (lower is better)
Translates to: SPDTPFLSVRIPGKTGNTSQTAA*RKSGRS
Trigger: CGACCTTCCTGACTTCCTCCACGCTGCAGTCTGGCT...TGTATTGCCAGTTTTGCCTGGGATCCTGACACTCAAGAATGGAGTATCTGGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
3UTR CAA 72 bp GGCGGTGAGACGCTGCATGGATTCCAGGCCATCTTCTaGAATTCCAACTCTTGTTTCAAGGGCTCCCATATG +
Preference number: 4 (lower is better)
Translates to: GGETLHGFQAIF*NSNSCFKGSHM
Trigger: CATATGGGAGCCCTTGAAACAAGAGTTGGAATTCAAGAAGATGGCCTGGAATCCATGCAGCGTCTCACCGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
CDS-3UTR TCA 90 bp ACCGAACAGAAAATGGAACTCACAGTTTGGGCTAACACAGGAAGAGGGCAGATCTTCTCTGTTCGCGGTTaGAGGCGATTCTCTGTGCTC +
Preference number: 4 (lower is better)
Translates to: TEQKMELTVWANTGRGQIFSVRG*RRFSVL
Trigger: GAGCACAGAGAATCGCCTTCAACCGCGAACAGAGAA...GATCTGCCCTCTTCCTGTGTTAGCCCAAACTGTGAGTTCCATTTTCTGTTCGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR TCA 90 bp ACCGAACAGAAAATGGAACTCACAGTTTGGGCTAACACAGGAAGAGGGCAGATCGATGAACTCAGCAGGTaGTGTGGGTGCTATGTCGCT +
Preference number: 4 (lower is better)
Translates to: TEQKMELTVWANTGRGQIDELSR*CGCYVA
Trigger: AGCGACATAGCACCCACATCACCTGCTGAGTTCATC...GATCTGCCCTCTTCCTGTGTTAGCCCAAACTGTGAGTTCCATTTTCTGTTCGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR TCA 90 bp AGTCCAGATACTCCATTCTTGAGTGTCAGGATCCCAGGCAAAACTGGCAATACAAAGTCAGGAAGGTCGTaGCTGCTGTCCACTCCTCTG +
Preference number: 4 (lower is better)
Translates to: SPDTPFLSVRIPGKTGNTKSGRS*LLSTPL
Trigger: CAGAGGAGTGGACAGCAGTCACGACCTTCCTGACTT...TGTATTGCCAGTTTTGCCTGGGATCCTGACACTCAAGAATGGAGTATCTGGACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR GCA 90 bp TCTCCCTACTGCACCGAACAGAAAATGGAACTCACAGTTTGGGCTAACACAGGAAGACGAAGACGCAGATaGAGATGCAGACGAAGACGC +
Preference number: 4 (lower is better)
Translates to: SPYCTEQKMELTVWANTGRRRRR*RCRRRR
Trigger: GCGTCTTCGTCTGCATCTGCATCTGCGTCTTCGTCT...TCCTGTGTTAGCCCAAACTGTGAGTTCCATTTTCTGTTCGGTGCAGTAGGGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR GCA 90 bp AACAGAAAATGGAACTCACAGTTTGGGCTAACACAGGAAGAGGGCAGATCAGATTTTCACCAGGCAAGCTaGACAGTCCCCACAGCCGAC +
Preference number: 4 (lower is better)
Translates to: NRKWNSQFGLTQEEGRSDFHQAS*TVPTAD
Trigger: GTCGGCTGTGGGGACTGTGCAGCTTGCCTGGTGAAA...ATCTGATCTGCCCTCTTCCTGTGTTAGCCCAAACTGTGAGTTCCATTTTCTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR GCA 90 bp ACTGAGATCCTCGGAGGAGCAGATGTGCTGCCAGCCTTCTACTCTCTTTCTCTTCCTCTACCTGCTTGCTaGTTTCTTGAATCTCGGACA +
Preference number: 4 (lower is better)
Translates to: TEILGGADVLPAFYSLSLPLPAC*FLESRT
Trigger: TGTCCGAGATTCAAGAAAGCAGCAAGCAGGTAGAGG...AAGAGAAAGAGAGTAGAAGGCTGGCAGCACATCTGCTCCTCCGAGGATCTCAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
CDS-3UTR CCA 90 bp AGATCAGATACACTGGCGGGGCAGTTGTCTAACTGGACTGGACACAATAGTCTGGTCTTGGGAATGGGATaGCATAAGGTGCCTTGTCTG +
Preference number: 4 (lower is better)
Translates to: RSDTLAGQLSNWTGHNSLVLGMG*HKVPCL
Trigger: CAGACAAGGCACCTTATGCCATCCCATTCCCAAGAC...CAGACTATTGTGTCCAGTCCAGTTAGACAACTGCCCCGCCAGTGTATCTGATCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CCA 90 bp ATCAGAAGTCCAGATACTCCATTCTTGAGTGTCAGGATCCCAGGCAAAACTGGCAGACAGATGCAGCAATaGCCACAGTCCTCTTGGGTC +
Preference number: 4 (lower is better)
Translates to: IRSPDTPFLSVRIPGKTGRQMQQ*PQSSWV
Trigger: GACCCAAGAGGACTGTGGCCATTGCTGCATCTGTCT...GCCAGTTTTGCCTGGGATCCTGACACTCAAGAATGGAGTATCTGGACTTCTGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CCA 90 bp TTGTCTAACTGGACTGGACACAATAGTCTGAACAGAGTAATCGGCTTTGGATCAAGGATGTGGAGGAAGTaGCGGGGCTTGGGAGTGACG +
Preference number: 4 (lower is better)
Translates to: LSNWTGHNSLNRVIGFGSRMWRK*RGLGVT
Trigger: CGTCACTCCCAAGCCCCGCCACTTCCTCCACATCCT...TGATCCAAAGCCGATTACTCTGTTCAGACTATTGTGTCCAGTCCAGTTAGACAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CCA 90 bp AGATCAGATACACTGGCGGGGCAGTTGTCTAACTGGACTGGACACAATAGTCTGAAGGGAGAGCTCAGTTaGAGTTGTCGAGCAGAAGCA +
Preference number: 4 (lower is better)
Translates to: RSDTLAGQLSNWTGHNSLKGELS*SCRAEA
Trigger: TGCTTCTGCTCGACAACTCCAACTGAGCTCTCCCTT...CAGACTATTGTGTCCAGTCCAGTTAGACAACTGCCCCGCCAGTGTATCTGATCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CCA 90 bp AGTCCAGATACTCCATTCTTGAGTGTCAGGATCCCAGGCAAAACTGGCAATACATGCTGTCCACTCCTCTaGAGCATCTGCCGTCTCTTG +
Preference number: 4 (lower is better)
Translates to: SPDTPFLSVRIPGKTGNTCCPLL*SICRLL
Trigger: CAAGAGACGGCAGATGCTCCAGAGGAGTGGACAGCA...TGTATTGCCAGTTTTGCCTGGGATCCTGACACTCAAGAATGGAGTATCTGGACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CCA 90 bp AACAGAAAATGGAACTCACAGTTTGGGCTAACACAGGAAGAGGGCAGATCAGATAGCCAGACTGCAGCGTaGAGGAAGTCAGGAAGGTCG +
Preference number: 4 (lower is better)
Translates to: NRKWNSQFGLTQEEGRSDSQTAA*RKSGRS
Trigger: CGACCTTCCTGACTTCCTCCACGCTGCAGTCTGGCT...ATCTGATCTGCCCTCTTCCTGTGTTAGCCCAAACTGTGAGTTCCATTTTCTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR TCA 90 bp TTGTCTAACTGGACTGGACACAATAGTCTGAACAGAGTAATCGGCTTTGGATCAGGGACAGCCAAGGGATaGGTCTTGGGAATGGGATGG +
Preference number: 4 (lower is better)
Translates to: LSNWTGHNSLNRVIGFGSGTAKG*VLGMGW
Trigger: CCATCCCATTCCCAAGACTCATCCCTTGGCTGTCCC...TGATCCAAAGCCGATTACTCTGTTCAGACTATTGTGTCCAGTCCAGTTAGACAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR TCA 90 bp AGTCCAGATACTCCATTCTTGAGTGTCAGGATCCCAGGCAAAACTGGCAATACAGATGAACTCAGCAGGTaGTGTGGGTGCTATGTCGCT +
Preference number: 4 (lower is better)
Translates to: SPDTPFLSVRIPGKTGNTDELSR*CGCYVA
Trigger: AGCGACATAGCACCCACATCACCTGCTGAGTTCATC...TGTATTGCCAGTTTTGCCTGGGATCCTGACACTCAAGAATGGAGTATCTGGACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR TCA 90 bp ACGGATGAGCTGGACAGGATTTCTTTACTTGCTGGGAACATCATGACATCCATGGATGAACTCAGCAGGTaGTGTGGGTGCTATGTCGCT +
Preference number: 4 (lower is better)
Translates to: TDELDRISLLAGNIMTSMDELSR*CGCYVA
Trigger: AGCGACATAGCACCCACATCACCTGCTGAGTTCATC...CATGGATGTCATGATGTTCCCAGCAAGTAAAGAAATCCTGTCCAGCTCATCCGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
CDS-3UTR TCA 90 bp GCAGATCAGATACACTGGCGGGGCAGTTGTCTAACTGGACTGGACACAATAGTCCTACACAGTAATAGATaGACTCAGCAGGTGATGTGG +
Preference number: 4 (lower is better)
Translates to: ADQIHWRGSCLTGLDTIVLHSNR*TQQVMW
Trigger: CCACATCACCTGCTGAGTTCATCTATTACTGTGTAG...GACTATTGTGTCCAGTCCAGTTAGACAACTGCCCCGCCAGTGTATCTGATCTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR GCA 90 bp AGTCCAGATACTCCATTCTTGAGTGTCAGGATCCCAGGCAAAACTGGCAATACACGCTGCAGCCCAACCTaGTGTTTCTTAGTCTTGGCT +
Preference number: 4 (lower is better)
Translates to: SPDTPFLSVRIPGKTGNTRCSPT*CFLVLA
Trigger: AGCCAAGACTAAGAAACAGCAGGTTGGGCTGCAGCG...TGTATTGCCAGTTTTGCCTGGGATCCTGACACTCAAGAATGGAGTATCTGGACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR GCA 90 bp AACAGAAAATGGAACTCACAGTTTGGGCTAACACAGGAAGAGGGCAGATCAGATCTGACCTCACTTCGCTaGAGCCCAACCTGCTGTTTC +
Preference number: 4 (lower is better)
Translates to: NRKWNSQFGLTQEEGRSDLTSLR*SPTCCF
Trigger: GAAACAGCAGGTTGGGCTGCAGCGAAGTGAGGTCAG...ATCTGATCTGCCCTCTTCCTGTGTTAGCCCAAACTGTGAGTTCCATTTTCTGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR GCA 90 bp AGTCCAGATACTCCATTCTTGAGTGTCAGGATCCCAGGCAAAACTGGCAATACAGAGAGCGAAGACAGATaGAGCAATGGCCACAGTCCT +
Preference number: 4 (lower is better)
Translates to: SPDTPFLSVRIPGKTGNTESEDR*SNGHSP
Trigger: AGGACTGTGGCCATTGCTGCATCTGTCTTCGCTCTC...TGTATTGCCAGTTTTGCCTGGGATCCTGACACTCAAGAATGGAGTATCTGGACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR GCA 90 bp ATCAGAAGTCCAGATACTCCATTCTTGAGTGTCAGGATCCCAGGCAAAACTGGCGAGCCTCTACCTGCTTaGTGCTTTCTTGAATCTCGG +
Preference number: 4 (lower is better)
Translates to: IRSPDTPFLSVRIPGKTGEPLPA*CFLESR
Trigger: CCGAGATTCAAGAAAGCAGCAAGCAGGTAGAGGCTC...GCCAGTTTTGCCTGGGATCCTGACACTCAAGAATGGAGTATCTGGACTTCTGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR GCA 90 bp TTGTCTAACTGGACTGGACACAATAGTCTGAACAGAGTAATCGGCTTTGGATCAGCATCTGCCGTCTCTTaGTTCACCTGGGGTAAGGCC +
Preference number: 4 (lower is better)
Translates to: LSNWTGHNSLNRVIGFGSASAVS*FTWGKA
Trigger: GGCCTTACCCCAGGTGAAGCAAGAGACGGCAGATGC...TGATCCAAAGCCGATTACTCTGTTCAGACTATTGTGTCCAGTCCAGTTAGACAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR GCA 90 bp CCACCCACTTCAGATTCTCTACATGGTACATCTCTAGATTTGCATTCCATTTCCCTAGGGAAGCCAGACTaGAGCGTGGAGGAAGTCAGG +
Preference number: 4 (lower is better)
Translates to: PPTSDSLHGTSLDLHSISLGKPD*SVEEVR
Trigger: CCTGACTTCCTCCACGCTGCAGTCTGGCTTCCCTAG...GGAAATGGAATGCAAATCTAGAGATGTACCATGTAGAGAATCTGAAGTGGGTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR GCA 90 bp TTGTCTAACTGGACTGGACACAATAGTCTGAACAGAGTAATCGGCTTTGGATCATCTGGCGCTTCTGGTTaGCACCCCCGAATTTGGGCT +
Preference number: 4 (lower is better)
Translates to: LSNWTGHNSLNRVIGFGSSGASG*HPRIWA
Trigger: AGCCCAAATTCGGGGGTGGCAACCAGAAGCGCCAGA...TGATCCAAAGCCGATTACTCTGTTCAGACTATTGTGTCCAGTCCAGTTAGACAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000224047.2
CDS-3UTR CCA 90 bp ATCAGAAGTCCAGATACTCCATTCTTGAGTGTCAGGATCCCAGGCAAAACTGGCGTCTTGGGAATGGGATaGCATAAGGTGCCTTGTCTG +
Preference number: 4 (lower is better)
Translates to: IRSPDTPFLSVRIPGKTGVLGMG*HKVPCL
Trigger: CAGACAAGGCACCTTATGCCATCCCATTCCCAAGAC...GCCAGTTTTGCCTGGGATCCTGACACTCAAGAATGGAGTATCTGGACTTCTGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CCA 90 bp TCTCCCTACTGCACCGAACAGAAAATGGAACTCACAGTTTGGGCTAACACAGGACCAAGGGATGAGTCTTaGGAATGGGATGGCATAAGG +
Preference number: 4 (lower is better)
Translates to: SPYCTEQKMELTVWANTGPRDES*EWDGIR
Trigger: CCTTATGCCATCCCATTCCCAAGACTCATCCCTTGG...TCCTGTGTTAGCCCAAACTGTGAGTTCCATTTTCTGTTCGGTGCAGTAGGGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CCA 90 bp ATCAGAAGTCCAGATACTCCATTCTTGAGTGTCAGGATCCCAGGCAAAACTGGCCCAAGGGATGAGTCTTaGGAATGGGATGGCATAAGG +
Preference number: 4 (lower is better)
Translates to: IRSPDTPFLSVRIPGKTGPRDES*EWDGIR
Trigger: CCTTATGCCATCCCATTCCCAAGACTCATCCCTTGG...GCCAGTTTTGCCTGGGATCCTGACACTCAAGAATGGAGTATCTGGACTTCTGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CCA 90 bp ACCGAACAGAAAATGGAACTCACAGTTTGGGCTAACACAGGAAGAGGGCAGATCCTTATATTCCCCCTGTaGAGTCTCTCTCCTGACCTC +
Preference number: 4 (lower is better)
Translates to: TEQKMELTVWANTGRGQILIFPL*SLSPDL
Trigger: GAGGTCAGGAGAGAGACTCCACAGGGGGAATATAAG...GATCTGCCCTCTTCCTGTGTTAGCCCAAACTGTGAGTTCCATTTTCTGTTCGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CCA 90 bp ACCTGCAAAAGTGCACAATCCCAGTGTGTTCCTACAGACTACTGTGAGGTTCACAAGGGAGAGCTCAGTTaGAGTTGTCGAGCAGAAGCA +
Preference number: 4 (lower is better)
Translates to: TCKSAQSQCVPTDYCEVHKGELS*SCRAEA
Trigger: TGCTTCTGCTCGACAACTCCAACTGAGCTCTCCCTT...GTGAACCTCACAGTAGTCTGTAGGAACACACTGGGATTGTGCACTTTTGCAGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
CDS-3UTR CCA 90 bp ATTTGTAACCCACCCACTTCAGATTCTCTACATGGTACATCTCTAGATTTGCATTCGGACAGGGCCTGGTaGTGCTGTGACCACAGCCCA +
Preference number: 4 (lower is better)
Translates to: ICNPPTSDSLHGTSLDLHSDRAW*CCDHSP
Trigger: TGGGCTGTGGTCACAGCACCACCAGGCCCTGTCCGA...ATGCAAATCTAGAGATGTACCATGTAGAGAATCTGAAGTGGGTGGGTTACAAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CCA 90 bp AACAGAAAATGGAACTCACAGTTTGGGCTAACACAGGAAGAGGGCAGATCAGATGTCTCTTGCTTCACCTaGGGTAAGGCCACAACCCAG +
Preference number: 4 (lower is better)
Translates to: NRKWNSQFGLTQEEGRSDVSCFT*GKATTQ
Trigger: CTGGGTTGTGGCCTTACCCCAGGTGAAGCAAGAGAC...ATCTGATCTGCCCTCTTCCTGTGTTAGCCCAAACTGTGAGTTCCATTTTCTGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CCA 90 bp AACAGAAAATGGAACTCACAGTTTGGGCTAACACAGGAAGAGGGCAGATCAGATTGCTGTCCACTCCTCTaGAGCATCTGCCGTCTCTTG +
Preference number: 4 (lower is better)
Translates to: NRKWNSQFGLTQEEGRSDCCPLL*SICRLL
Trigger: CAAGAGACGGCAGATGCTCCAGAGGAGTGGACAGCA...ATCTGATCTGCCCTCTTCCTGTGTTAGCCCAAACTGTGAGTTCCATTTTCTGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CCA 90 bp CCACCCACTTCAGATTCTCTACATGGTACATCTCTAGATTTGCATTCCATTTCCGCAAACTGCAGGCACTaGCGCCAACGACACTTCTGG +
Preference number: 4 (lower is better)
Translates to: PPTSDSLHGTSLDLHSISANCRH*RQRHFW
Trigger: CCAGAAGTGTCGTTGGCGCCAGTGCCTGCAGTTTGC...GGAAATGGAATGCAAATCTAGAGATGTACCATGTAGAGAATCTGAAGTGGGTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224047.2
3UTR CAA 72 bp GAGCTCAGCAAACAGCAGTCCCTTTCCCGCCTTTATTaGCAGAGCATTGCAACTGCTGTTTCCCTGAGAAAA +
Preference number: 4 (lower is better)
Translates to: ELSKQQSLSRLY*QSIATAVSLRK
Trigger: TTTTCTCAGGGAAACAGCAGTTGCAATGCTCTGCAAATAAAGGCGGGAAAGGGACTGCTGTTTGCTGAGCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
CDS-3UTR GCA 90 bp CCACCCACTTCAGATTCTCTACATGGTACATCTCTAGATTTGCATTCCATTTCCCTGACCTCACTTCGCTaGAGCCCAACCTGCTGTTTC +
Preference number: 4 (lower is better)
Translates to: PPTSDSLHGTSLDLHSISLTSLR*SPTCCF
Trigger: GAAACAGCAGGTTGGGCTGCAGCGAAGTGAGGTCAG...GGAAATGGAATGCAAATCTAGAGATGTACCATGTAGAGAATCTGAAGTGGGTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR GCA 90 bp TTGTCTAACTGGACTGGACACAATAGTCTGAACAGAGTAATCGGCTTTGGATCAGCTATGTCGCTGATGTaGAGCTCTGTGGGCTCTGTG +
Preference number: 4 (lower is better)
Translates to: LSNWTGHNSLNRVIGFGSAMSLM*SSVGSV
Trigger: CACAGAGCCCACAGAGCTGCACATCAGCGACATAGC...TGATCCAAAGCCGATTACTCTGTTCAGACTATTGTGTCCAGTCCAGTTAGACAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR GCA 90 bp CCACCCACTTCAGATTCTCTACATGGTACATCTCTAGATTTGCATTCCATTTCCGCTATGTCGCTGATGTaGAGCTCTGTGGGCTCTGTG +
Preference number: 4 (lower is better)
Translates to: PPTSDSLHGTSLDLHSISAMSLM*SSVGSV
Trigger: CACAGAGCCCACAGAGCTGCACATCAGCGACATAGC...GGAAATGGAATGCAAATCTAGAGATGTACCATGTAGAGAATCTGAAGTGGGTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR GCA 90 bp TCTCCCTACTGCACCGAACAGAAAATGGAACTCACAGTTTGGGCTAACACAGGACCTCTACCTGCTTGCTaGTTTCTTGAATCTCGGACA +
Preference number: 4 (lower is better)
Translates to: SPYCTEQKMELTVWANTGPLPAC*FLESRT
Trigger: TGTCCGAGATTCAAGAAAGCAGCAAGCAGGTAGAGG...TCCTGTGTTAGCCCAAACTGTGAGTTCCATTTTCTGTTCGGTGCAGTAGGGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR GCA 90 bp GAGACGCTGCATGGATTCCAGGCCATCTTCTTGAATTCCAACTCTTGTTTCAAGGAGCCTCTACCTGCTTaGTGCTTTCTTGAATCTCGG +
Preference number: 4 (lower is better)
Translates to: ETLHGFQAIFLNSNSCFKEPLPA*CFLESR
Trigger: CCGAGATTCAAGAAAGCAGCAAGCAGGTAGAGGCTC...CTTGAAACAAGAGTTGGAATTCAAGAAGATGGCCTGGAATCCATGCAGCGTCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
CDS-3UTR GCA 90 bp TTGTCTAACTGGACTGGACACAATAGTCTGAACAGAGTAATCGGCTTTGGATCAGTACTGGGACTTCTGTaGAAGCTGCAGCAGTGCCAG +
Preference number: 4 (lower is better)
Translates to: LSNWTGHNSLNRVIGFGSVLGLL*KLQQCQ
Trigger: CTGGCACTGCTGCAGCTTGCACAGAAGTCCCAGTAC...TGATCCAAAGCCGATTACTCTGTTCAGACTATTGTGTCCAGTCCAGTTAGACAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CCA 90 bp ATTTGTAACCCACCCACTTCAGATTCTCTACATGGTACATCTCTAGATTTGCATCTGAGGCCACATCACTaGGCAGTTGCAGGCGACAGG +
Preference number: 4 (lower is better)
Translates to: ICNPPTSDSLHGTSLDLHLRPHH*AVAGDR
Trigger: CCTGTCGCCTGCAACTGCCCAGTGATGTGGCCTCAG...ATGCAAATCTAGAGATGTACCATGTAGAGAATCTGAAGTGGGTGGGTTACAAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CCA 90 bp AACAGAAAATGGAACTCACAGTTTGGGCTAACACAGGAAGAGGGCAGATCAGATAGACAGATGCAGCAATaGCCACAGTCCTCTTGGGTC +
Preference number: 4 (lower is better)
Translates to: NRKWNSQFGLTQEEGRSDRQMQQ*PQSSWV
Trigger: GACCCAAGAGGACTGTGGCCATTGCTGCATCTGTCT...ATCTGATCTGCCCTCTTCCTGTGTTAGCCCAAACTGTGAGTTCCATTTTCTGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CCA 90 bp ATTTGTAACCCACCCACTTCAGATTCTCTACATGGTACATCTCTAGATTTGCATTGCAAACACCTCCACTaGCGCTTGAGACCAGGGCGG +
Preference number: 4 (lower is better)
Translates to: ICNPPTSDSLHGTSLDLHCKHLH*RLRPGR
Trigger: CCGCCCTGGTCTCAAGCGCCAGTGGAGGTGTTTGCA...ATGCAAATCTAGAGATGTACCATGTAGAGAATCTGAAGTGGGTGGGTTACAAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CCA 90 bp CCACCCACTTCAGATTCTCTACATGGTACATCTCTAGATTTGCATTCCATTTCCTGCCAGGCATCTGCATaGCACTGCTGGTACCCTCTT +
Preference number: 4 (lower is better)
Translates to: PPTSDSLHGTSLDLHSISCQASA*HCWYPL
Trigger: AAGAGGGTACCAGCAGTGCCATGCAGATGCCTGGCA...GGAAATGGAATGCAAATCTAGAGATGTACCATGTAGAGAATCTGAAGTGGGTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR TCA 90 bp CCACCCACTTCAGATTCTCTACATGGTACATCTCTAGATTTGCATTCCATTTCCTGGCCTCGGAAGAGATaGGCAGTGTGCCAAAAACAG +
Preference number: 4 (lower is better)
Translates to: PPTSDSLHGTSLDLHSISWPRKR*AVCQKQ
Trigger: CTGTTTTTGGCACACTGCTCATCTCTTCCGAGGCCA...GGAAATGGAATGCAAATCTAGAGATGTACCATGTAGAGAATCTGAAGTGGGTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000239157.2
CDS-3UTR GCA 90 bp ATCAGAAGTCCAGATACTCCATTCTTGAGTGTCAGGATCCCAGGCAAAACTGGCGAGTCAGCTCAACTTTaGTTCGGATCTTTTCTCCTG +
Preference number: 4 (lower is better)
Translates to: IRSPDTPFLSVRIPGKTGESAQL*FGSFLL
Trigger: CAGGAGAAAAGATCCGAAGCAAAGTTGAGCTGACTC...GCCAGTTTTGCCTGGGATCCTGACACTCAAGAATGGAGTATCTGGACTTCTGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR GCA 90 bp CCACCCACTTCAGATTCTCTACATGGTACATCTCTAGATTTGCATTCCATTTCCCGCTGCAGCCCAACCTaGTGTTTCTTAGTCTTGGCT +
Preference number: 4 (lower is better)
Translates to: PPTSDSLHGTSLDLHSISRCSPT*CFLVLA
Trigger: AGCCAAGACTAAGAAACAGCAGGTTGGGCTGCAGCG...GGAAATGGAATGCAAATCTAGAGATGTACCATGTAGAGAATCTGAAGTGGGTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR GCA 90 bp TTGTCTAACTGGACTGGACACAATAGTCTGAACAGAGTAATCGGCTTTGGATCAAGACGCAGATGCAGATaGAGATGCAGACGAAGACGC +
Preference number: 4 (lower is better)
Translates to: LSNWTGHNSLNRVIGFGSRRRCR*RCRRRR
Trigger: GCGTCTTCGTCTGCATCTGCATCTGCATCTGCGTCT...TGATCCAAAGCCGATTACTCTGTTCAGACTATTGTGTCCAGTCCAGTTAGACAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR GCA 90 bp TTGTCTAACTGGACTGGACACAATAGTCTGAACAGAGTAATCGGCTTTGGATCAGAGAGCGAAGACAGATaGAGCAATGGCCACAGTCCT +
Preference number: 4 (lower is better)
Translates to: LSNWTGHNSLNRVIGFGSESEDR*SNGHSP
Trigger: AGGACTGTGGCCATTGCTGCATCTGTCTTCGCTCTC...TGATCCAAAGCCGATTACTCTGTTCAGACTATTGTGTCCAGTCCAGTTAGACAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR GCA 90 bp AACAGAAAATGGAACTCACAGTTTGGGCTAACACAGGAAGAGGGCAGATCAGATGAGCCTCTACCTGCTTaGTGCTTTCTTGAATCTCGG +
Preference number: 4 (lower is better)
Translates to: NRKWNSQFGLTQEEGRSDEPLPA*CFLESR
Trigger: CCGAGATTCAAGAAAGCAGCAAGCAGGTAGAGGCTC...ATCTGATCTGCCCTCTTCCTGTGTTAGCCCAAACTGTGAGTTCCATTTTCTGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CCA 90 bp ACCGAACAGAAAATGGAACTCACAGTTTGGGCTAACACAGGAAGAGGGCAGATCGGATCTTTTCTCCTGTaGGGCTCTGGTAATAGATGT +
Preference number: 4 (lower is better)
Translates to: TEQKMELTVWANTGRGQIGSFLL*GSGNRC
Trigger: ACATCTATTACCAGAGCCCCACAGGAGAAAAGATCC...GATCTGCCCTCTTCCTGTGTTAGCCCAAACTGTGAGTTCCATTTTCTGTTCGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CCA 90 bp AACAGAAAATGGAACTCACAGTTTGGGCTAACACAGGAAGAGGGCAGATCAGATCCAAGGGATGAGTCTTaGGAATGGGATGGCATAAGG +
Preference number: 4 (lower is better)
Translates to: NRKWNSQFGLTQEEGRSDPRDES*EWDGIR
Trigger: CCTTATGCCATCCCATTCCCAAGACTCATCCCTTGG...ATCTGATCTGCCCTCTTCCTGTGTTAGCCCAAACTGTGAGTTCCATTTTCTGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CCA 90 bp AACAGAAAATGGAACTCACAGTTTGGGCTAACACAGGAAGAGGGCAGATCAGATAAGGGAGAGCTCAGTTaGAGTTGTCGAGCAGAAGCA +
Preference number: 4 (lower is better)
Translates to: NRKWNSQFGLTQEEGRSDKGELS*SCRAEA
Trigger: TGCTTCTGCTCGACAACTCCAACTGAGCTCTCCCTT...ATCTGATCTGCCCTCTTCCTGTGTTAGCCCAAACTGTGAGTTCCATTTTCTGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CCA 90 bp TCACTGACAGATACTAAGTGCAATTCATGTGTATACACGGTTAAGGTTGGTTTTGCAGCAGCCGCTTCATaGCAAACTGCAGGCACTGGC +
Preference number: 4 (lower is better)
Translates to: SLTDTKCNSCVYTVKVGFAAAAS*QTAGTG
Trigger: GCCAGTGCCTGCAGTTTGCCATGAAGCGGCTGCTGC...AAAACCAACCTTAACCGTGTATACACATGAATTGCACTTAGTATCTGTCAGTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224047.2
CDS-3UTR TCA 90 bp AGTCCAGATACTCCATTCTTGAGTGTCAGGATCCCAGGCAAAACTGGCAATACACTACACAGTAATAGATaGACTCAGCAGGTGATGTGG +
Preference number: 4 (lower is better)
Translates to: SPDTPFLSVRIPGKTGNTLHSNR*TQQVMW
Trigger: CCACATCACCTGCTGAGTTCATCTATTACTGTGTAG...TGTATTGCCAGTTTTGCCTGGGATCCTGACACTCAAGAATGGAGTATCTGGACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR TCA 90 bp ATCCATGGTCTTCGGCCTTACATTTTCAGCAATGTAGTTTTGTTATGTCATCCTAAGTCAGGAAGGTCGTaGCTGCTGTCCACTCCTCTG +
Preference number: 4 (lower is better)
Translates to: IHGLRPYIFSNVVLLCHPKSGRS*LLSTPL
Trigger: CAGAGGAGTGGACAGCAGTCACGACCTTCCTGACTT...AGGATGACATAACAAAACTACATTGCTGAAAATGTAAGGCCGAAGACCATGGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
CDS-3UTR GCA 90 bp TCACTGACAGATACTAAGTGCAATTCATGTGTATACACGGTTAAGGTTGGTTTTTTTCACCAGGCAAGCTaGACAGTCCCCACAGCCGAC +
Preference number: 4 (lower is better)
Translates to: SLTDTKCNSCVYTVKVGFFHQAS*TVPTAD
Trigger: GTCGGCTGTGGGGACTGTGCAGCTTGCCTGGTGAAA...AAAACCAACCTTAACCGTGTATACACATGAATTGCACTTAGTATCTGTCAGTGA
46% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR GCA 90 bp TCACTGACAGATACTAAGTGCAATTCATGTGTATACACGGTTAAGGTTGGTTTTGCATCTGCCGTCTCTTaGTTCACCTGGGGTAAGGCC +
Preference number: 4 (lower is better)
Translates to: SLTDTKCNSCVYTVKVGFASAVS*FTWGKA
Trigger: GGCCTTACCCCAGGTGAAGCAAGAGACGGCAGATGC...AAAACCAACCTTAACCGTGTATACACATGAATTGCACTTAGTATCTGTCAGTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR GCA 90 bp TCACTGACAGATACTAAGTGCAATTCATGTGTATACACGGTTAAGGTTGGTTTTCAGGAAGGTCGTGACTaGTGTCCACTCCTCTGGAGC +
Preference number: 4 (lower is better)
Translates to: SLTDTKCNSCVYTVKVGFQEGRD*CPLLWS
Trigger: GCTCCAGAGGAGTGGACAGCAGTCACGACCTTCCTG...AAAACCAACCTTAACCGTGTATACACATGAATTGCACTTAGTATCTGTCAGTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR GCA 90 bp TCACTGACAGATACTAAGTGCAATTCATGTGTATACACGGTTAAGGTTGGTTTTCTAGGGAAGCCAGACTaGAGCGTGGAGGAAGTCAGG +
Preference number: 4 (lower is better)
Translates to: SLTDTKCNSCVYTVKVGFLGKPD*SVEEVR
Trigger: CCTGACTTCCTCCACGCTGCAGTCTGGCTTCCCTAG...AAAACCAACCTTAACCGTGTATACACATGAATTGCACTTAGTATCTGTCAGTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CCA 90 bp CCACCCACTTCAGATTCTCTACATGGTACATCTCTAGATTTGCATTCCATTTCCCTTATATTCCCCCTGTaGAGTCTCTCTCCTGACCTC +
Preference number: 4 (lower is better)
Translates to: PPTSDSLHGTSLDLHSISLIFPL*SLSPDL
Trigger: GAGGTCAGGAGAGAGACTCCACAGGGGGAATATAAG...GGAAATGGAATGCAAATCTAGAGATGTACCATGTAGAGAATCTGAAGTGGGTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CCA 90 bp TCACTGACAGATACTAAGTGCAATTCATGTGTATACACGGTTAAGGTTGGTTTTAGCCAGACTGCAGCGTaGAGGAAGTCAGGAAGGTCG +
Preference number: 4 (lower is better)
Translates to: SLTDTKCNSCVYTVKVGFSQTAA*RKSGRS
Trigger: CGACCTTCCTGACTTCCTCCACGCTGCAGTCTGGCT...AAAACCAACCTTAACCGTGTATACACATGAATTGCACTTAGTATCTGTCAGTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR GCA 90 bp AACAGAAAATGGAACTCACAGTTTGGGCTAACACAGGAAGAGGGCAGATCAGATGAGTCAGCTCAACTTTaGTTCGGATCTTTTCTCCTG +
Preference number: 4 (lower is better)
Translates to: NRKWNSQFGLTQEEGRSDESAQL*FGSFLL
Trigger: CAGGAGAAAAGATCCGAAGCAAAGTTGAGCTGACTC...ATCTGATCTGCCCTCTTCCTGTGTTAGCCCAAACTGTGAGTTCCATTTTCTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR GCA 90 bp ATTTGTAACCCACCCACTTCAGATTCTCTACATGGTACATCTCTAGATTTGCATAGACGAAGACGCAGATaGAGATGCAGACGAAGACGC +
Preference number: 4 (lower is better)
Translates to: ICNPPTSDSLHGTSLDLHRRRRR*RCRRRR
Trigger: GCGTCTTCGTCTGCATCTGCATCTGCGTCTTCGTCT...ATGCAAATCTAGAGATGTACCATGTAGAGAATCTGAAGTGGGTGGGTTACAAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR GCA 90 bp CCACCCACTTCAGATTCTCTACATGGTACATCTCTAGATTTGCATTCCATTTCCCCTCTACCTGCTTGCTaGTTTCTTGAATCTCGGACA +
Preference number: 4 (lower is better)
Translates to: PPTSDSLHGTSLDLHSISPLPAC*FLESRT
Trigger: TGTCCGAGATTCAAGAAAGCAGCAAGCAGGTAGAGG...GGAAATGGAATGCAAATCTAGAGATGTACCATGTAGAGAATCTGAAGTGGGTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR GCA 90 bp GCAGATCAGATACACTGGCGGGGCAGTTGTCTAACTGGACTGGACACAATAGTCACTTCTTCTTTCAACTaGAGCTCAGTAAAATACTCT +
Preference number: 4 (lower is better)
Translates to: ADQIHWRGSCLTGLDTIVTSSFN*SSVKYS
Trigger: AGAGTATTTTACTGAGCTGCAGTTGAAAGAAGAAGT...GACTATTGTGTCCAGTCCAGTTAGACAACTGCCCCGCCAGTGTATCTGATCTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CCA 90 bp AACAGAAAATGGAACTCACAGTTTGGGCTAACACAGGAAGAGGGCAGATCAGATGGATCTTTTCTCCTGTaGGGCTCTGGTAATAGATGT +
Preference number: 4 (lower is better)
Translates to: NRKWNSQFGLTQEEGRSDGSFLL*GSGNRC
Trigger: ACATCTATTACCAGAGCCCCACAGGAGAAAAGATCC...ATCTGATCTGCCCTCTTCCTGTGTTAGCCCAAACTGTGAGTTCCATTTTCTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CCA 90 bp TCACTGACAGATACTAAGTGCAATTCATGTGTATACACGGTTAAGGTTGGTTTTGTCTCTTGCTTCACCTaGGGTAAGGCCACAACCCAG +
Preference number: 4 (lower is better)
Translates to: SLTDTKCNSCVYTVKVGFVSCFT*GKATTQ
Trigger: CTGGGTTGTGGCCTTACCCCAGGTGAAGCAAGAGAC...AAAACCAACCTTAACCGTGTATACACATGAATTGCACTTAGTATCTGTCAGTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CCA 90 bp TCACTGACAGATACTAAGTGCAATTCATGTGTATACACGGTTAAGGTTGGTTTTCACTTCTGGCGCTTCTaGTTGCCACCCCCGAATTTG +
Preference number: 4 (lower is better)
Translates to: SLTDTKCNSCVYTVKVGFHFWRF*LPPPNL
Trigger: CAAATTCGGGGGTGGCAACCAGAAGCGCCAGAAGTG...AAAACCAACCTTAACCGTGTATACACATGAATTGCACTTAGTATCTGTCAGTGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000224047.2
CDS-3UTR CCA 90 bp CCACCCACTTCAGATTCTCTACATGGTACATCTCTAGATTTGCATTCCATTTCCAATCACGTTTACCAGTaGGGGAAACCACAACGTGAG +
Preference number: 4 (lower is better)
Translates to: PPTSDSLHGTSLDLHSISNHVYQ*GKPQRE
Trigger: CTCACGTTGTGGTTTCCCCCACTGGTAAACGTGATT...GGAAATGGAATGCAAATCTAGAGATGTACCATGTAGAGAATCTGAAGTGGGTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000239157.2
CDS-3UTR GCA 90 bp ATTTGTAACCCACCCACTTCAGATTCTCTACATGGTACATCTCTAGATTTGCATGAGCCTCTACCTGCTTaGTGCTTTCTTGAATCTCGG +
Preference number: 4 (lower is better)
Translates to: ICNPPTSDSLHGTSLDLHEPLPA*CFLESR
Trigger: CCGAGATTCAAGAAAGCAGCAAGCAGGTAGAGGCTC...ATGCAAATCTAGAGATGTACCATGTAGAGAATCTGAAGTGGGTGGGTTACAAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CCA 90 bp ATTTGTAACCCACCCACTTCAGATTCTCTACATGGTACATCTCTAGATTTGCATAAGGGAGAGCTCAGTTaGAGTTGTCGAGCAGAAGCA +
Preference number: 4 (lower is better)
Translates to: ICNPPTSDSLHGTSLDLHKGELS*SCRAEA
Trigger: TGCTTCTGCTCGACAACTCCAACTGAGCTCTCCCTT...ATGCAAATCTAGAGATGTACCATGTAGAGAATCTGAAGTGGGTGGGTTACAAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR GCA 90 bp ATTTGTAACCCACCCACTTCAGATTCTCTACATGGTACATCTCTAGATTTGCATCCTCTACCTGCTTGCTaGTTTCTTGAATCTCGGACA +
Preference number: 4 (lower is better)
Translates to: ICNPPTSDSLHGTSLDLHPLPAC*FLESRT
Trigger: TGTCCGAGATTCAAGAAAGCAGCAAGCAGGTAGAGG...ATGCAAATCTAGAGATGTACCATGTAGAGAATCTGAAGTGGGTGGGTTACAAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR GCA 90 bp ACCGAACAGAAAATGGAACTCACAGTTTGGGCTAACACAGGAAGAGGGCAGATCACTTCTTCTTTCAACTaGAGCTCAGTAAAATACTCT +
Preference number: 4 (lower is better)
Translates to: TEQKMELTVWANTGRGQITSSFN*SSVKYS
Trigger: AGAGTATTTTACTGAGCTGCAGTTGAAAGAAGAAGT...GATCTGCCCTCTTCCTGTGTTAGCCCAAACTGTGAGTTCCATTTTCTGTTCGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR GCA 90 bp ATCAGAAGTCCAGATACTCCATTCTTGAGTGTCAGGATCCCAGGCAAAACTGGCACTTCTTCTTTCAACTaGAGCTCAGTAAAATACTCT +
Preference number: 4 (lower is better)
Translates to: IRSPDTPFLSVRIPGKTGTSSFN*SSVKYS
Trigger: AGAGTATTTTACTGAGCTGCAGTTGAAAGAAGAAGT...GCCAGTTTTGCCTGGGATCCTGACACTCAAGAATGGAGTATCTGGACTTCTGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CCA 90 bp TCACTGACAGATACTAAGTGCAATTCATGTGTATACACGGTTAAGGTTGGTTTTGTCTTGGGAATGGGATaGCATAAGGTGCCTTGTCTG +
Preference number: 4 (lower is better)
Translates to: SLTDTKCNSCVYTVKVGFVLGMG*HKVPCL
Trigger: CAGACAAGGCACCTTATGCCATCCCATTCCCAAGAC...AAAACCAACCTTAACCGTGTATACACATGAATTGCACTTAGTATCTGTCAGTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CCA 90 bp ACCGAACAGAAAATGGAACTCACAGTTTGGGCTAACACAGGAAGAGGGCAGATCTTTCTTAGTCTTGGCTaGTTTAGAAGGCTTCTTTTT +
Preference number: 4 (lower is better)
Translates to: TEQKMELTVWANTGRGQIFLSLG*FRRLLF
Trigger: AAAAAGAAGCCTTCTAAACCAGCCAAGACTAAGAAA...GATCTGCCCTCTTCCTGTGTTAGCCCAAACTGTGAGTTCCATTTTCTGTTCGGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR TCA 90 bp ATTTGTAACCCACCCACTTCAGATTCTCTACATGGTACATCTCTAGATTTGCATCTACACAGTAATAGATaGACTCAGCAGGTGATGTGG +
Preference number: 4 (lower is better)
Translates to: ICNPPTSDSLHGTSLDLHLHSNR*TQQVMW
Trigger: CCACATCACCTGCTGAGTTCATCTATTACTGTGTAG...ATGCAAATCTAGAGATGTACCATGTAGAGAATCTGAAGTGGGTGGGTTACAAAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CCA 90 bp AACAGAAAATGGAACTCACAGTTTGGGCTAACACAGGAAGAGGGCAGATCAGATTTTCTTAGTCTTGGCTaGTTTAGAAGGCTTCTTTTT +
Preference number: 4 (lower is better)
Translates to: NRKWNSQFGLTQEEGRSDFLSLG*FRRLLF
Trigger: AAAAAGAAGCCTTCTAAACCAGCCAAGACTAAGAAA...ATCTGATCTGCCCTCTTCCTGTGTTAGCCCAAACTGTGAGTTCCATTTTCTGTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CCA 90 bp TTGTCTAACTGGACTGGACACAATAGTCTGAACAGAGTAATCGGCTTTGGATCATTTCTTAGTCTTGGCTaGTTTAGAAGGCTTCTTTTT +
Preference number: 4 (lower is better)
Translates to: LSNWTGHNSLNRVIGFGSFLSLG*FRRLLF
Trigger: AAAAAGAAGCCTTCTAAACCAGCCAAGACTAAGAAA...TGATCCAAAGCCGATTACTCTGTTCAGACTATTGTGTCCAGTCCAGTTAGACAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
3UTR CAA 72 bp CAATTTGCAAAGAATTTTCAGGATCAACCTTTGAGGTaGACAAAATTCTCGTACAGGGTTAAAGGAATTGAA +
Preference number: 4 (lower is better)
Translates to: QFAKNFQDQPLR*TKFSYRVKGIE
Trigger: TTCAATTCCTTTAACCCTGTACGAGAATTTTGTCAACCTCAAAGGTTGATCCTGAAAATTCTTTGCAAATTG
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS GCA 90 bp GGCCACAGTCCATCCGCCGTAGGCAGGCTGCACAGGCCCCACACTTaGGGTTCTGCCGCTGGTTCGTGTAGGGCTGTAGCTCGTCCTCGT +
Preference number: 5 (lower is better)
Translates to: GHSPSAVGRLHRPHT*GSAAGSCRAVARPR
Trigger: ACGAGGACGAGCTACAGCCCTACACGAACCAGCGGCAGAACCGCAAGTGTGGGGCCTGTGCAGCCTGCCTACGGCGGATGGACTGTGGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224047.2
CDS GCA 90 bp CCCAGCTCGGGGCAGAGCACTGGGCCGCCTGTACTGGGACTTCTGTaGAAGCTGCAGCAGTGCCAGGCATCTGCATGGCACTGCTGGTAC +
Preference number: 5 (lower is better)
Translates to: PSSGQSTGPPVLGLL*KLQQCQASAWHCWY
Trigger: GTACCAGCAGTGCCATGCAGATGCCTGGCACTGCTGCAGCTTGCACAGAAGTCCCAGTACAGGCGGCCCAGTGCTCTGCCCCGAGCTGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000224332.2
ENSMUST00000239157.2
CDS CCA 90 bp ACTGCTGTCCACTCCTCTGGAGCATCTGCCGTCTCTTGCTTCACCTaGGGTAAGGCCACAACCCAGCTCGGGGCAGAGCACTGGGCCGCC +
Preference number: 5 (lower is better)
Translates to: TAVHSSGASAVSCFT*GKATTQLGAEHWAA
Trigger: GGCGGCCCAGTGCTCTGCCCCGAGCTGGGTTGTGGCCTTACCCCAGGTGAAGCAAGAGACGGCAGATGCTCCAGAGGAGTGGACAGCAGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000224332.2
ENSMUST00000239157.2
CDS CCA 90 bp GGCGCCAACGACACTTCTGGCGCTTCTGGTTGCCACCCCCGAATTTaGGCTTGTCGCAGCAGAAGTCGCAGCGGCCACAGTCCATCCGCC +
Preference number: 5 (lower is better)
Translates to: GANDTSGASGCHPRI*ACRSRSRSGHSPSA
Trigger: GGCGGATGGACTGTGGCCGCTGCGACTTCTGCTGCGACAAGCCCAAATTCGGGGGTGGCAACCAGAAGCGCCAGAAGTGTCGTTGGCGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000224047.2
CDS CCA 90 bp TGCTTCACCTGGGGTAAGGCCACAACCCAGCTCGGGGCAGAGCACTaGGCCGCCTGTACTGGGACTTCTGTGCAAGCTGCAGCAGTGCCA +
Preference number: 5 (lower is better)
Translates to: CFTWGKATTQLGAEH*AACTGTSVQAAAVP
Trigger: TGGCACTGCTGCAGCTTGCACAGAAGTCCCAGTACAGGCGGCCCAGTGCTCTGCCCCGAGCTGGGTTGTGGCCTTACCCCAGGTGAAGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000224332.2
ENSMUST00000239157.2
CDS GCA 90 bp AAGGTCGTGACTGCTGTCCACTCCTCTGGAGCATCTGCCGTCTCTTaGTTCACCTGGGGTAAGGCCACAACCCAGCTCGGGGCAGAGCAC +
Preference number: 5 (lower is better)
Translates to: KVVTAVHSSGASAVS*FTWGKATTQLGAEH
Trigger: GTGCTCTGCCCCGAGCTGGGTTGTGGCCTTACCCCAGGTGAAGCAAGAGACGGCAGATGCTCCAGAGGAGTGGACAGCAGTCACGACCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000224332.2
ENSMUST00000239157.2
CDS CCA 90 bp AGCCGCTTCATGGCAAACTGCAGGCACTGGCGCCAACGACACTTCTaGCGCTTCTGGTTGCCACCCCCGAATTTGGGCTTGTCGCAGCAG +
Preference number: 5 (lower is better)
Translates to: SRFMANCRHWRQRHF*RFWLPPPNLGLSQQ
Trigger: CTGCTGCGACAAGCCCAAATTCGGGGGTGGCAACCAGAAGCGCCAGAAGTGTCGTTGGCGCCAGTGCCTGCAGTTTGCCATGAAGCGGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000224047.2
CDS TCA 90 bp GGGTGCTATGTCGCTGATGTGCAGCTCTGTGGGCTCTGTGTACTGTaGTGCAGGATGTGGAGGAAGTGGCGGGGCTTGGGAGTGACGCTG +
Preference number: 5 (lower is better)
Translates to: GCYVADVQLCGLCVL*CRMWRKWRGLGVTL
Trigger: CAGCGTCACTCCCAAGCCCCGCCACTTCCTCCACATCCTGCATCACAGTACACAGAGCCCACAGAGCTGCACATCAGCGACATAGCACCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000224332.2
ENSMUST00000239157.2
CDS-3UTR CAA 90 bp TCTGGGCACAGCAAACTGTCAGCCAGCGGTGGGGAAGGACACGCTGAGGAACAGTCTGGATCTGCAGCCTaGCTAGGGAAGCCAGACTGC +
Preference number: 5 (lower is better)
Translates to: SGHSKLSASGGEGHAEEQSGSAA*LGKPDC
Trigger: GCAGTCTGGCTTCCCTAGCAAGGCTGCAGATCCAGA...CTGTTCCTCAGCGTGTCCTTCCCCACCGCTGGCTGACAGTTTGCTGTGCCCAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
CDS TCA 90 bp CATAATCCGCAGGCATCGTCTCCGCTCACACTTGCAGTAAAGCCCTaGGGCCACATCACTGGGCAGTTGCAGGCGACAGGTGGAGCACAC +
Preference number: 5 (lower is better)
Translates to: HNPQASSPLTLAVKP*GHITGQLQATGGAH
Trigger: GTGTGCTCCACCTGTCGCCTGCAACTGCCCAGTGATGTGGCCTCAGGGCTTTACTGCAAGTGTGAGCGGAGACGATGCCTGCGGATTATG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000224332.2
ENSMUST00000239157.2
CDS GCA 90 bp GCGACAGGTGGAGCACACCCCACAGTCCTCTTTCACCAGGCAAGCTaGACAGTCCCCACAGCCGACTCGCTTAAACATTCTCTGTTCGCG +
Preference number: 5 (lower is better)
Translates to: ATGGAHPTVLFHQAS*TVPTADSLKHSLFA
Trigger: CGCGAACAGAGAATGTTTAAGCGAGTCGGCTGTGGGGACTGTGCAGCTTGCCTGGTGAAAGAGGACTGTGGGGTGTGCTCCACCTGTCGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000224332.2
ENSMUST00000239157.2
CDS GCA 90 bp AGGGAAGCCAGACTGCAGCGTGGAGGAAGTCAGGAAGGTCGTGACTaGTGTCCACTCCTCTGGAGCATCTGCCGTCTCTTGCTTCACCTG +
Preference number: 5 (lower is better)
Translates to: REARLQRGGSQEGRD*CPLLWSICRLLLHL
Trigger: CAGGTGAAGCAAGAGACGGCAGATGCTCCAGAGGAGTGGACAGCAGTCACGACCTTCCTGACTTCCTCCACGCTGCAGTCTGGCTTCCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000224332.2
ENSMUST00000239157.2
CDS CCA 90 bp ATCGTCTCCGCTCACACTTGCAGTAAAGCCCTGAGGCCACATCACTaGGCAGTTGCAGGCGACAGGTGGAGCACACCCCACAGTCCTCTT +
Preference number: 5 (lower is better)
Translates to: IVSAHTCSKALRPHH*AVAGDRWSTPHSPL
Trigger: AAGAGGACTGTGGGGTGTGCTCCACCTGTCGCCTGCAACTGCCCAGTGATGTGGCCTCAGGGCTTTACTGCAAGTGTGAGCGGAGACGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000224332.2
ENSMUST00000239157.2
CDS TCA 90 bp GGAGAGCGAAGACAGATGCAGCAATGGCCACAGTCCTCTTGGGTCTaGCAACCCCGACACACGCCACACCCTCGGCTCTTCTCCATAATC +
Preference number: 5 (lower is better)
Translates to: GERRQMQQWPQSSWV*QPRHTPHPRLFSII
Trigger: GATTATGGAGAAGAGCCGAGGGTGTGGCGTGTGTCGGGGTTGTCAGACCCAAGAGGACTGTGGCCATTGCTGCATCTGTCTTCGCTCTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000224332.2
ENSMUST00000239157.2
CDS GCA 90 bp ACAGGTGAAAGGTCTGGATCTGCAGCCTTGCTAGGGAAGCCAGACTaGAGCGTGGAGGAAGTCAGGAAGGTCGTGACTGCTGTCCACTCC +
Preference number: 5 (lower is better)
Translates to: TGERSGSAALLGKPD*SVEEVRKVVTAVHS
Trigger: GGAGTGGACAGCAGTCACGACCTTCCTGACTTCCTCCACGCTGCAGTCTGGCTTCCCTAGCAAGGCTGCAGATCCAGACCTTTCACCTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000224332.2
ENSMUST00000239157.2
CDS-3UTR CAA 90 bp GCACCGAACAGAAAATGGAACTCACAGTTTGGGCTAACACAGGAAGAGGGCAGACACCTCCACTGGCGCTaGAGACCAGGGCGGGGAGAG +
Preference number: 5 (lower is better)
Translates to: APNRKWNSQFGLTQEEGRHLHWR*RPGRGE
Trigger: CTCTCCCCGCCCTGGTCTCAAGCGCCAGTGGAGGTG...TCTGCCCTCTTCCTGTGTTAGCCCAAACTGTGAGTTCCATTTTCTGTTCGGTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS TCA 90 bp CTGCTTGCTGCTTTCTTGAATCTCGGACAGGGCCTGGTGGTGCTGTaGCCACAGCCCAAGGGGCCTTTAAGGGAGAGCTCAGTTGGAGTT +
Preference number: 5 (lower is better)
Translates to: LLAAFLNLGQGLVVL*PQPKGPLRESSVGV
Trigger: AACTCCAACTGAGCTCTCCCTTAAAGGCCCCTTGGGCTGTGGTCACAGCACCACCAGGCCCTGTCCGAGATTCAAGAAAGCAGCAAGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000224332.2
ENSMUST00000239157.2
CDS GCA 90 bp ACAAAGTCTGTGTCAGGCTGGGGCAGTACAGAGCCTCTACCTGCTTaGTGCTTTCTTGAATCTCGGACAGGGCCTGGTGGTGCTGTGACC +
Preference number: 5 (lower is better)
Translates to: TKSVSGWGSTEPLPA*CFLESRTGPGGAVT
Trigger: GGTCACAGCACCACCAGGCCCTGTCCGAGATTCAAGAAAGCAGCAAGCAGGTAGAGGCTCTGTACTGCCCCAGCCTGACACAGACTTTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000224332.2
ENSMUST00000239157.2
CDS-3UTR CAA 90 bp ACCTGCAAAAGTGCACAATCCCAGTGTGTTCCTACAGACTACTGTGAGGTTCACCACCTCCACTGGCGCTaGAGACCAGGGCGGGGAGAG +
Preference number: 5 (lower is better)
Translates to: TCKSAQSQCVPTDYCEVHHLHWR*RPGRGE
Trigger: CTCTCCCCGCCCTGGTCTCAAGCGCCAGTGGAGGTG...GTGAACCTCACAGTAGTCTGTAGGAACACACTGGGATTGTGCACTTTTGCAGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
CDS-3UTR CAA 90 bp ACCGAACAGAAAATGGAACTCACAGTTTGGGCTAACACAGGAAGAGGGCAGATCCACCTCCACTGGCGCTaGAGACCAGGGCGGGGAGAG +
Preference number: 5 (lower is better)
Translates to: TEQKMELTVWANTGRGQIHLHWR*RPGRGE
Trigger: CTCTCCCCGCCCTGGTCTCAAGCGCCAGTGGAGGTG...GATCTGCCCTCTTCCTGTGTTAGCCCAAACTGTGAGTTCCATTTTCTGTTCGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CAA 90 bp AGTCCAGATACTCCATTCTTGAGTGTCAGGATCCCAGGCAAAACTGGCAATACAGCACAGGCCCCACACTaGCGGTTCTGCCGCTGGTTC +
Preference number: 5 (lower is better)
Translates to: SPDTPFLSVRIPGKTGNTAQAPH*RFCRWF
Trigger: GAACCAGCGGCAGAACCGCAAGTGTGGGGCCTGTGC...TGTATTGCCAGTTTTGCCTGGGATCCTGACACTCAAGAATGGAGTATCTGGACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000224047.2
CDS-3UTR CAA 90 bp AGATCAGATACACTGGCGGGGCAGTTGTCTAACTGGACTGGACACAATAGTCTGTTCTGGCGCTTCTGGTaGCCACCCCCGAATTTGGGC +
Preference number: 5 (lower is better)
Translates to: RSDTLAGQLSNWTGHNSLFWRFW*PPPNLG
Trigger: GCCCAAATTCGGGGGTGGCAACCAGAAGCGCCAGAA...CAGACTATTGTGTCCAGTCCAGTTAGACAACTGCCCCGCCAGTGTATCTGATCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000224047.2
CDS TCA 90 bp CTCGTCCTCGTCCTCGTCTACACAGTAATAGATGAACTCAGCAGGTaGTGTGGGTGCTATGTCGCTGATGTGCAGCTCTGTGGGCTCTGT +
Preference number: 5 (lower is better)
Translates to: LVLVLVYTVIDELSR*CGCYVADVQLCGLC
Trigger: ACAGAGCCCACAGAGCTGCACATCAGCGACATAGCACCCACATCACCTGCTGAGTTCATCTATTACTGTGTAGACGAGGACGAGGACGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000224332.2
ENSMUST00000239157.2
CDS GCA 90 bp GCCTTATATTCCCCCTGTGGAGTCTCTCTCCTGACCTCACTTCGCTaGAGCCCAACCTGCTGTTTCTTAGTCTTGGCTGGTTTAGAAGGC +
Preference number: 5 (lower is better)
Translates to: ALYSPCGVSLLTSLR*SPTCCFLVLAGLEG
Trigger: GCCTTCTAAACCAGCCAAGACTAAGAAACAGCAGGTTGGGCTGCAGCGAAGTGAGGTCAGGAGAGAGACTCCACAGGGGGAATATAAGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CAA 90 bp ACCGAACAGAAAATGGAACTCACAGTTTGGGCTAACACAGGAAGAGGGCAGATCGCACTGCTGACATCCTaGAGAGTGGCCTCGGAAGAG +
Preference number: 5 (lower is better)
Translates to: TEQKMELTVWANTGRGQIALLTS*RVASEE
Trigger: CTCTTCCGAGGCCACTCTCAAGGATGTCAGCAGTGC...GATCTGCCCTCTTCCTGTGTTAGCCCAAACTGTGAGTTCCATTTTCTGTTCGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000239157.2
CDS-3UTR CAA 90 bp ATTTGTAACCCACCCACTTCAGATTCTCTACATGGTACATCTCTAGATTTGCATCACCTCCACTGGCGCTaGAGACCAGGGCGGGGAGAG +
Preference number: 5 (lower is better)
Translates to: ICNPPTSDSLHGTSLDLHHLHWR*RPGRGE
Trigger: CTCTCCCCGCCCTGGTCTCAAGCGCCAGTGGAGGTG...ATGCAAATCTAGAGATGTACCATGTAGAGAATCTGAAGTGGGTGGGTTACAAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CAA 90 bp AGTCCAGATACTCCATTCTTGAGTGTCAGGATCCCAGGCAAAACTGGCAATACATCTGGATCTGCAGCCTaGCTAGGGAAGCCAGACTGC +
Preference number: 5 (lower is better)
Translates to: SPDTPFLSVRIPGKTGNTSGSAA*LGKPDC
Trigger: GCAGTCTGGCTTCCCTAGCAAGGCTGCAGATCCAGA...TGTATTGCCAGTTTTGCCTGGGATCCTGACACTCAAGAATGGAGTATCTGGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS CCA 90 bp GCACTGCTGGTACCCTCTTGTAAAAACACAAAGTCTGTGTCAGGCTaGGGCAGTACAGAGCCTCTACCTGCTTGCTGCTTTCTTGAATCT +
Preference number: 5 (lower is better)
Translates to: ALLVPSCKNTKSVSG*GSTEPLPACCFLES
Trigger: AGATTCAAGAAAGCAGCAAGCAGGTAGAGGCTCTGTACTGCCCCAGCCTGACACAGACTTTGTGTTTTTACAAGAGGGTACCAGCAGTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000224332.2
ENSMUST00000239157.2
CDS-3UTR CAA 90 bp ATCAGAAGTCCAGATACTCCATTCTTGAGTGTCAGGATCCCAGGCAAAACTGGCGGCTTCTTTTTCTTCTaGCTGGGGACAGCCAAGGGA +
Preference number: 5 (lower is better)
Translates to: IRSPDTPFLSVRIPGKTGGFFFF*LGTAKG
Trigger: TCCCTTGGCTGTCCCCAGCAAGAAGAAAAAGAAGCC...GCCAGTTTTGCCTGGGATCCTGACACTCAAGAATGGAGTATCTGGACTTCTGAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CAA 90 bp GCACCGAACAGAAAATGGAACTCACAGTTTGGGCTAACACAGGAAGAGGGCAGACGAGTCAGCTCAACTTaGCTTCGGATCTTTTCTCCT +
Preference number: 5 (lower is better)
Translates to: APNRKWNSQFGLTQEEGRRVSST*LRIFSP
Trigger: AGGAGAAAAGATCCGAAGCAAAGTTGAGCTGACTCG...TCTGCCCTCTTCCTGTGTTAGCCCAAACTGTGAGTTCCATTTTCTGTTCGGTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CAA 90 bp TTGTCTAACTGGACTGGACACAATAGTCTGAACAGAGTAATCGGCTTTGGATCATCTGGATCTGCAGCCTaGCTAGGGAAGCCAGACTGC +
Preference number: 5 (lower is better)
Translates to: LSNWTGHNSLNRVIGFGSSGSAA*LGKPDC
Trigger: GCAGTCTGGCTTCCCTAGCAAGGCTGCAGATCCAGA...TGATCCAAAGCCGATTACTCTGTTCAGACTATTGTGTCCAGTCCAGTTAGACAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CAA 90 bp GCACCGAACAGAAAATGGAACTCACAGTTTGGGCTAACACAGGAAGAGGGCAGAACAGTTTATGTAGCCTaGGCAACCAGGCTTCTGCAT +
Preference number: 5 (lower is better)
Translates to: APNRKWNSQFGLTQEEGRTVYVA*ATRLLH
Trigger: ATGCAGAAGCCTGGTTGCCAAGGCTACATAAACTGT...TCTGCCCTCTTCCTGTGTTAGCCCAAACTGTGAGTTCCATTTTCTGTTCGGTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CAA 90 bp AACAGAAAATGGAACTCACAGTTTGGGCTAACACAGGAAGAGGGCAGATCAGATGGCTTCTTTTTCTTCTaGCTGGGGACAGCCAAGGGA +
Preference number: 5 (lower is better)
Translates to: NRKWNSQFGLTQEEGRSDGFFFF*LGTAKG
Trigger: TCCCTTGGCTGTCCCCAGCAAGAAGAAAAAGAAGCC...ATCTGATCTGCCCTCTTCCTGTGTTAGCCCAAACTGTGAGTTCCATTTTCTGTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CAA 90 bp GCACCGAACAGAAAATGGAACTCACAGTTTGGGCTAACACAGGAAGAGGGCAGATGCTGTTTCTTAGTCTaGGCTGGTTTAGAAGGCTTC +
Preference number: 5 (lower is better)
Translates to: APNRKWNSQFGLTQEEGRCCFLV*AGLEGF
Trigger: GAAGCCTTCTAAACCAGCCAAGACTAAGAAACAGCA...TCTGCCCTCTTCCTGTGTTAGCCCAAACTGTGAGTTCCATTTTCTGTTCGGTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CAA 90 bp ACCGAACAGAAAATGGAACTCACAGTTTGGGCTAACACAGGAAGAGGGCAGATCTCTCCTCTGCTGGGGTaGTTTCAGAGACATCATCTT +
Preference number: 5 (lower is better)
Translates to: TEQKMELTVWANTGRGQISPLLG*FQRHHL
Trigger: AAGATGATGTCTCTGAAACAACCCCAGCAGAGGAGA...GATCTGCCCTCTTCCTGTGTTAGCCCAAACTGTGAGTTCCATTTTCTGTTCGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CAA 90 bp ATTTGTAACCCACCCACTTCAGATTCTCTACATGGTACATCTCTAGATTTGCATCCCCCGAATTTGGGCTaGTCGCAGCAGAAGTCGCAG +
Preference number: 5 (lower is better)
Translates to: ICNPPTSDSLHGTSLDLHPPNLG*SQQKSQ
Trigger: CTGCGACTTCTGCTGCGACAAGCCCAAATTCGGGGG...ATGCAAATCTAGAGATGTACCATGTAGAGAATCTGAAGTGGGTGGGTTACAAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000224047.2
CDS CCA 90 bp CACAACGTCTTAAGTCTCTGCCTTTTGACACCATCCCATGAAAAGTaGATTCCACAATTCTCACAGCACACAGGTGCATGTGAAGACGCA +
Preference number: 5 (lower is better)
Translates to: HNVLSLCLLTPSHEK*IPQFSQHTGACEDA
Trigger: TGCGTCTTCACATGCACCTGTGTGCTGTGAGAATTGTGGAATCCACTTTTCATGGGATGGTGTCAAAAGGCAGAGACTTAAGACGTTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000224332.2
ENSMUST00000239157.2
CDS-3UTR CAA 90 bp AACAGAAAATGGAACTCACAGTTTGGGCTAACACAGGAAGAGGGCAGATCAGATATTCTCTGTTCGCGGTaGAAGGCGATTCTCTGTGCT +
Preference number: 5 (lower is better)
Translates to: NRKWNSQFGLTQEEGRSDILCSR*KAILCA
Trigger: AGCACAGAGAATCGCCTTCAACCGCGAACAGAGAAT...ATCTGATCTGCCCTCTTCCTGTGTTAGCCCAAACTGTGAGTTCCATTTTCTGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CAA 90 bp AGTCCAGATACTCCATTCTTGAGTGTCAGGATCCCAGGCAAAACTGGCAATACATCTCCTCTGCTGGGGTaGTTTCAGAGACATCATCTT +
Preference number: 5 (lower is better)
Translates to: SPDTPFLSVRIPGKTGNTSPLLG*FQRHHL
Trigger: AAGATGATGTCTCTGAAACAACCCCAGCAGAGGAGA...TGTATTGCCAGTTTTGCCTGGGATCCTGACACTCAAGAATGGAGTATCTGGACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CAA 90 bp ACGGATGAGCTGGACAGGATTTCTTTACTTGCTGGGAACATCATGACATCCATGTCTCCTCTGCTGGGGTaGTTTCAGAGACATCATCTT +
Preference number: 5 (lower is better)
Translates to: TDELDRISLLAGNIMTSMSPLLG*FQRHHL
Trigger: AAGATGATGTCTCTGAAACAACCCCAGCAGAGGAGA...CATGGATGTCATGATGTTCCCAGCAAGTAAAGAAATCCTGTCCAGCTCATCCGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
CDS-3UTR CAA 90 bp ATTTGTAACCCACCCACTTCAGATTCTCTACATGGTACATCTCTAGATTTGCATTTGCCACCCCCGAATTaGGGCTTGTCGCAGCAGAAG +
Preference number: 5 (lower is better)
Translates to: ICNPPTSDSLHGTSLDLHLPPPN*GLSQQK
Trigger: CTTCTGCTGCGACAAGCCCAAATTCGGGGGTGGCAA...ATGCAAATCTAGAGATGTACCATGTAGAGAATCTGAAGTGGGTGGGTTACAAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000224047.2
CDS-3UTR CAA 90 bp AACAGAAAATGGAACTCACAGTTTGGGCTAACACAGGAAGAGGGCAGATCAGATCGAGTCAGCTCAACTTaGCTTCGGATCTTTTCTCCT +
Preference number: 5 (lower is better)
Translates to: NRKWNSQFGLTQEEGRSDRVSST*LRIFSP
Trigger: AGGAGAAAAGATCCGAAGCAAAGTTGAGCTGACTCG...ATCTGATCTGCCCTCTTCCTGTGTTAGCCCAAACTGTGAGTTCCATTTTCTGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CAA 90 bp AGTCCAGATACTCCATTCTTGAGTGTCAGGATCCCAGGCAAAACTGGCAATACATGCTGTTTCTTAGTCTaGGCTGGTTTAGAAGGCTTC +
Preference number: 5 (lower is better)
Translates to: SPDTPFLSVRIPGKTGNTCCFLV*AGLEGF
Trigger: GAAGCCTTCTAAACCAGCCAAGACTAAGAAACAGCA...TGTATTGCCAGTTTTGCCTGGGATCCTGACACTCAAGAATGGAGTATCTGGACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CAA 90 bp TTGTCTAACTGGACTGGACACAATAGTCTGAACAGAGTAATCGGCTTTGGATCAATTCTCTGTTCGCGGTaGAAGGCGATTCTCTGTGCT +
Preference number: 5 (lower is better)
Translates to: LSNWTGHNSLNRVIGFGSILCSR*KAILCA
Trigger: AGCACAGAGAATCGCCTTCAACCGCGAACAGAGAAT...TGATCCAAAGCCGATTACTCTGTTCAGACTATTGTGTCCAGTCCAGTTAGACAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CAA 90 bp TCACTGACAGATACTAAGTGCAATTCATGTGTATACACGGTTAAGGTTGGTTTTTCTGGATCTGCAGCCTaGCTAGGGAAGCCAGACTGC +
Preference number: 5 (lower is better)
Translates to: SLTDTKCNSCVYTVKVGFSGSAA*LGKPDC
Trigger: GCAGTCTGGCTTCCCTAGCAAGGCTGCAGATCCAGA...AAAACCAACCTTAACCGTGTATACACATGAATTGCACTTAGTATCTGTCAGTGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CAA 90 bp AACAGAAAATGGAACTCACAGTTTGGGCTAACACAGGAAGAGGGCAGATCAGATACAGTTTATGTAGCCTaGGCAACCAGGCTTCTGCAT +
Preference number: 5 (lower is better)
Translates to: NRKWNSQFGLTQEEGRSDTVYVA*ATRLLH
Trigger: ATGCAGAAGCCTGGTTGCCAAGGCTACATAAACTGT...ATCTGATCTGCCCTCTTCCTGTGTTAGCCCAAACTGTGAGTTCCATTTTCTGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS GCA 90 bp GCGATTCTCTGTGCTCGACAATCTTTGCACAACGTCTTAAGTCTCTaGCTTTTGACACCATCCCATGAAAAGTGGATTCCACAATTCTCA +
Preference number: 5 (lower is better)
Translates to: AILCARQSLHNVLSL*LLTPSHEKWIPQFS
Trigger: TGAGAATTGTGGAATCCACTTTTCATGGGATGGTGTCAAAAGGCAGAGACTTAAGACGTTGTGCAAAGATTGTCGAGCACAGAGAATCGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000224332.2
ENSMUST00000239157.2
CDS-3UTR CAA 90 bp TTGTCTAACTGGACTGGACACAATAGTCTGAACAGAGTAATCGGCTTTGGATCACGAGTCAGCTCAACTTaGCTTCGGATCTTTTCTCCT +
Preference number: 5 (lower is better)
Translates to: LSNWTGHNSLNRVIGFGSRVSST*LRIFSP
Trigger: AGGAGAAAAGATCCGAAGCAAAGTTGAGCTGACTCG...TGATCCAAAGCCGATTACTCTGTTCAGACTATTGTGTCCAGTCCAGTTAGACAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CAA 90 bp CCACCCACTTCAGATTCTCTACATGGTACATCTCTAGATTTGCATTCCATTTCCACAGTTTATGTAGCCTaGGCAACCAGGCTTCTGCAT +
Preference number: 5 (lower is better)
Translates to: PPTSDSLHGTSLDLHSISTVYVA*ATRLLH
Trigger: ATGCAGAAGCCTGGTTGCCAAGGCTACATAAACTGT...GGAAATGGAATGCAAATCTAGAGATGTACCATGTAGAGAATCTGAAGTGGGTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CAA 90 bp CCACCCACTTCAGATTCTCTACATGGTACATCTCTAGATTTGCATTCCATTTCCTGCTGTTTCTTAGTCTaGGCTGGTTTAGAAGGCTTC +
Preference number: 5 (lower is better)
Translates to: PPTSDSLHGTSLDLHSISCCFLV*AGLEGF
Trigger: GAAGCCTTCTAAACCAGCCAAGACTAAGAAACAGCA...GGAAATGGAATGCAAATCTAGAGATGTACCATGTAGAGAATCTGAAGTGGGTGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS-3UTR CAA 90 bp ATCCATGGTCTTCGGCCTTACATTTTCAGCAATGTAGTTTTGTTATGTCATCCTATTCTCTGTTCGCGGTaGAAGGCGATTCTCTGTGCT +
Preference number: 5 (lower is better)
Translates to: IHGLRPYIFSNVVLLCHPILCSR*KAILCA
Trigger: AGCACAGAGAATCGCCTTCAACCGCGAACAGAGAAT...AGGATGACATAACAAAACTACATTGCTGAAAATGTAAGGCCGAAGACCATGGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
CDS GCA 72 bp CCATCCGCCGTAGGCAGGCTGCACAGGCCCCACACTTaGGGTTCTGCCGCTGGTTCGTGTAGGGCTGTAGCT +
Preference number: 6 (lower is better)
Translates to: PSAVGRLHRPHT*GSAAGSCRAVA
Trigger: AGCTACAGCCCTACACGAACCAGCGGCAGAACCGCAAGTGTGGGGCCTGTGCAGCCTGCCTACGGCGGATGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224047.2
CDS GCA 72 bp GGGCAGAGCACTGGGCCGCCTGTACTGGGACTTCTGTaGAAGCTGCAGCAGTGCCAGGCATCTGCATGGCAC +
Preference number: 6 (lower is better)
Translates to: GQSTGPPVLGLL*KLQQCQASAWH
Trigger: GTGCCATGCAGATGCCTGGCACTGCTGCAGCTTGCACAGAAGTCCCAGTACAGGCGGCCCAGTGCTCTGCCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000224332.2
ENSMUST00000239157.2
CDS CCA 72 bp TGGGGTAAGGCCACAACCCAGCTCGGGGCAGAGCACTaGGCCGCCTGTACTGGGACTTCTGTGCAAGCTGCA +
Preference number: 6 (lower is better)
Translates to: WGKATTQLGAEH*AACTGTSVQAA
Trigger: TGCAGCTTGCACAGAAGTCCCAGTACAGGCGGCCCAGTGCTCTGCCCCGAGCTGGGTTGTGGCCTTACCCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000224332.2
ENSMUST00000239157.2
CDS CAA 90 bp TGGCGCCAACGACACTTCTGGCGCTTCTGGTTGCCACCCCCGAATTaGGGCTTGTCGCAGCAGAAGTCGCAGCGGCCACAGTCCATCCGC +
Preference number: 6 (lower is better)
Translates to: WRQRHFWRFWLPPPN*GLSQQKSQRPQSIR
Trigger: GCGGATGGACTGTGGCCGCTGCGACTTCTGCTGCGACAAGCCCAAATTCGGGGGTGGCAACCAGAAGCGCCAGAAGTGTCGTTGGCGCCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000224047.2
CDS CAA 90 bp AGGGCGGGGAGAGCGAAGACAGATGCAGCAATGGCCACAGTCCTCTaGGGTCTGACAACCCCGACACACGCCACACCCTCGGCTCTTCTC +
Preference number: 6 (lower is better)
Translates to: RAGRAKTDAAMATVL*GLTTPTHATPSALL
Trigger: GAGAAGAGCCGAGGGTGTGGCGTGTGTCGGGGTTGTCAGACCCAAGAGGACTGTGGCCATTGCTGCATCTGTCTTCGCTCTCCCCGCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000224332.2
ENSMUST00000239157.2
CDS CAA 90 bp CAACGACACTTCTGGCGCTTCTGGTTGCCACCCCCGAATTTGGGCTaGTCGCAGCAGAAGTCGCAGCGGCCACAGTCCATCCGCCGTAGG +
Preference number: 6 (lower is better)
Translates to: QRHFWRFWLPPPNLG*SQQKSQRPQSIRRR
Trigger: CCTACGGCGGATGGACTGTGGCCGCTGCGACTTCTGCTGCGACAAGCCCAAATTCGGGGGTGGCAACCAGAAGCGCCAGAAGTGTCGTTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000224047.2
CDS GCA 72 bp GCACTGGGCCGCCTGTACTGGGACTTCTGTGCAAGCTaGAGCAGTGCCAGGCATCTGCATGGCACTGCTGGT +
Preference number: 6 (lower is better)
Translates to: ALGRLYWDFCAS*SSARHLHGTAG
Trigger: ACCAGCAGTGCCATGCAGATGCCTGGCACTGCTGCAGCTTGCACAGAAGTCCCAGTACAGGCGGCCCAGTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000224332.2
ENSMUST00000239157.2
CDS CCA 72 bp CTGGGCAGCAGCCGCTTCATGGCAAACTGCAGGCACTaGCGCCAACGACACTTCTGGCGCTTCTGGTTGCCA +
Preference number: 6 (lower is better)
Translates to: LGSSRFMANCRH*RQRHFWRFWLP
Trigger: TGGCAACCAGAAGCGCCAGAAGTGTCGTTGGCGCCAGTGCCTGCAGTTTGCCATGAAGCGGCTGCTGCCCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224047.2
CDS CAA 72 bp CGACACTTCTGGCGCTTCTGGTTGCCACCCCCGAATTaGGGCTTGTCGCAGCAGAAGTCGCAGCGGCCACAG +
Preference number: 6 (lower is better)
Translates to: RHFWRFWLPPPN*GLSQQKSQRPQ
Trigger: CTGTGGCCGCTGCGACTTCTGCTGCGACAAGCCCAAATTCGGGGGTGGCAACCAGAAGCGCCAGAAGTGTCG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000224047.2
CDS CAA 90 bp AGAGTGGCCTCGGAAGAGATGAGCAGTGTGCCAAAAACAGCGCCGTaGCAAACACCTCCACTGGCGCTTGAGACCAGGGCGGGGAGAGCG +
Preference number: 6 (lower is better)
Translates to: RVASEEMSSVPKTAP*QTPPLALETRAGRA
Trigger: CGCTCTCCCCGCCCTGGTCTCAAGCGCCAGTGGAGGTGTTTGCAACGGCGCTGTTTTTGGCACACTGCTCATCTCTTCCGAGGCCACTCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000239157.2
CDS GCA 72 bp ACTGCTGTCCACTCCTCTGGAGCATCTGCCGTCTCTTaGTTCACCTGGGGTAAGGCCACAACCCAGCTCGGG +
Preference number: 6 (lower is better)
Translates to: TAVHSSGASAVS*FTWGKATTQLG
Trigger: CCCGAGCTGGGTTGTGGCCTTACCCCAGGTGAAGCAAGAGACGGCAGATGCTCCAGAGGAGTGGACAGCAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000224332.2
ENSMUST00000239157.2
CDS CCA 72 bp CTGAGGCCACATCACTGGGCAGTTGCAGGCGACAGGTaGAGCACACCCCACAGTCCTCTTTCACCAGGCAAG +
Preference number: 6 (lower is better)
Translates to: LRPHHWAVAGDR*STPHSPLSPGK
Trigger: CTTGCCTGGTGAAAGAGGACTGTGGGGTGTGCTCCACCTGTCGCCTGCAACTGCCCAGTGATGTGGCCTCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000224332.2
ENSMUST00000239157.2
CDS CCA 72 bp GACACTTCTGGCGCTTCTGGTTGCCACCCCCGAATTTaGGCTTGTCGCAGCAGAAGTCGCAGCGGCCACAGT +
Preference number: 6 (lower is better)
Translates to: DTSGASGCHPRI*ACRSRSRSGHS
Trigger: ACTGTGGCCGCTGCGACTTCTGCTGCGACAAGCCCAAATTCGGGGGTGGCAACCAGAAGCGCCAGAAGTGTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000224047.2
CDS TCA 72 bp CAGGCATCGTCTCCGCTCACACTTGCAGTAAAGCCCTaGGGCCACATCACTGGGCAGTTGCAGGCGACAGGT +
Preference number: 6 (lower is better)
Translates to: QASSPLTLAVKP*GHITGQLQATG
Trigger: ACCTGTCGCCTGCAACTGCCCAGTGATGTGGCCTCAGGGCTTTACTGCAAGTGTGAGCGGAGACGATGCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000224332.2
ENSMUST00000239157.2
CDS TCA 72 bp AGACAGATGCAGCAATGGCCACAGTCCTCTTGGGTCTaGCAACCCCGACACACGCCACACCCTCGGCTCTTC +
Preference number: 6 (lower is better)
Translates to: RQMQQWPQSSWV*QPRHTPHPRLF
Trigger: GAAGAGCCGAGGGTGTGGCGTGTGTCGGGGTTGTCAGACCCAAGAGGACTGTGGCCATTGCTGCATCTGTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000224332.2
ENSMUST00000239157.2
CDS GCA 72 bp CCGCCTGTACTGGGACTTCTGTGCAAGCTGCAGCAGTaGCAGGCATCTGCATGGCACTGCTGGTACCCTCTT +
Preference number: 6 (lower is better)
Translates to: PPVLGLLCKLQQ*QASAWHCWYPL
Trigger: AAGAGGGTACCAGCAGTGCCATGCAGATGCCTGGCACTGCTGCAGCTTGCACAGAAGTCCCAGTACAGGCGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000224332.2
ENSMUST00000239157.2
CDS CAA 90 bp CCAGGGGGCTCTTGTTTCACAGGTGAAAGGTCTGGATCTGCAGCCTaGCTAGGGAAGCCAGACTGCAGCGTGGAGGAAGTCAGGAAGGTC +
Preference number: 6 (lower is better)
Translates to: PGGSCFTGERSGSAA*LGKPDCSVEEVRKV
Trigger: GACCTTCCTGACTTCCTCCACGCTGCAGTCTGGCTTCCCTAGCAAGGCTGCAGATCCAGACCTTTCACCTGTGAAACAAGAGCCCCCTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000224332.2
ENSMUST00000239157.2
CDS TCA 72 bp GCTTTCTTGAATCTCGGACAGGGCCTGGTGGTGCTGTaGCCACAGCCCAAGGGGCCTTTAAGGGAGAGCTCA +
Preference number: 6 (lower is better)
Translates to: AFLNLGQGLVVL*PQPKGPLRESS
Trigger: TGAGCTCTCCCTTAAAGGCCCCTTGGGCTGTGGTCACAGCACCACCAGGCCCTGTCCGAGATTCAAGAAAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000224332.2
ENSMUST00000239157.2
CDS TCA 72 bp GGGCAGTACAGAGCCTCTACCTGCTTGCTGCTTTCTTaGATCTCGGACAGGGCCTGGTGGTGCTGTGACCAC +
Preference number: 6 (lower is better)
Translates to: GQYRASTCLLLS*ISDRAWWCCDH
Trigger: GTGGTCACAGCACCACCAGGCCCTGTCCGAGATTCAAGAAAGCAGCAAGCAGGTAGAGGCTCTGTACTGCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000224332.2
ENSMUST00000239157.2
CDS GCA 72 bp TCAGGCTGGGGCAGTACAGAGCCTCTACCTGCTTGCTaGTTTCTTGAATCTCGGACAGGGCCTGGTGGTGCT +
Preference number: 6 (lower is better)
Translates to: SGWGSTEPLPAC*FLESRTGPGGA
Trigger: AGCACCACCAGGCCCTGTCCGAGATTCAAGAAAGCAGCAAGCAGGTAGAGGCTCTGTACTGCCCCAGCCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000224332.2
ENSMUST00000239157.2
CDS GCA 72 bp GTGTCAGGCTGGGGCAGTACAGAGCCTCTACCTGCTTaGTGCTTTCTTGAATCTCGGACAGGGCCTGGTGGT +
Preference number: 6 (lower is better)
Translates to: VSGWGSTEPLPA*CFLESRTGPGG
Trigger: ACCACCAGGCCCTGTCCGAGATTCAAGAAAGCAGCAAGCAGGTAGAGGCTCTGTACTGCCCCAGCCTGACAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000224332.2
ENSMUST00000239157.2
CDS GCA 72 bp AGGTCTGGATCTGCAGCCTTGCTAGGGAAGCCAGACTaGAGCGTGGAGGAAGTCAGGAAGGTCGTGACTGCT +
Preference number: 6 (lower is better)
Translates to: RSGSAALLGKPD*SVEEVRKVVTA
Trigger: AGCAGTCACGACCTTCCTGACTTCCTCCACGCTGCAGTCTGGCTTCCCTAGCAAGGCTGCAGATCCAGACCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000224332.2
ENSMUST00000239157.2
CDS CAA 72 bp TCGGAAGAGATGAGCAGTGTGCCAAAAACAGCGCCGTaGCAAACACCTCCACTGGCGCTTGAGACCAGGGCG +
Preference number: 6 (lower is better)
Translates to: SEEMSSVPKTAP*QTPPLALETRA
Trigger: CGCCCTGGTCTCAAGCGCCAGTGGAGGTGTTTGCAACGGCGCTGTTTTTGGCACACTGCTCATCTCTTCCGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000239157.2
CDS TCA 72 bp ATCCTCTTCAGGGCCAGGGGGCTCTTGTTTCACAGGTaGAAGGTCTGGATCTGCAGCCTTGCTAGGGAAGCC +
Preference number: 6 (lower is better)
Translates to: ILFRARGLLFHR*KVWICSLAREA
Trigger: GGCTTCCCTAGCAAGGCTGCAGATCCAGACCTTTCACCTGTGAAACAAGAGCCCCCTGGCCCTGAAGAGGAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000224332.2
ENSMUST00000239157.2
CDS GCA 72 bp GGAGCACACCCCACAGTCCTCTTTCACCAGGCAAGCTaGACAGTCCCCACAGCCGACTCGCTTAAACATTCT +
Preference number: 6 (lower is better)
Translates to: GAHPTVLFHQAS*TVPTADSLKHS
Trigger: AGAATGTTTAAGCGAGTCGGCTGTGGGGACTGTGCAGCTTGCCTGGTGAAAGAGGACTGTGGGGTGTGCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000224332.2
ENSMUST00000239157.2
CDS GCA 72 bp TTACTAGAATCACGTTTACCCCAAAAACAGCGCCGTTaGAAACACCTCCACTGGCGCTTGAGACCAGGGCGG +
Preference number: 6 (lower is better)
Translates to: LLESRLPQKQRR*KHLHWRLRPGR
Trigger: CCGCCCTGGTCTCAAGCGCCAGTGGAGGTGTTTGCAACGGCGCTGTTTTTGGGGTAAACGTGATTCTAGTAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000224332.2
CDS CAA 72 bp CTTACTAGAATCACGTTTACCCCAAAAACAGCGCCGTaGCAAACACCTCCACTGGCGCTTGAGACCAGGGCG +
Preference number: 6 (lower is better)
Translates to: LTRITFTPKTAP*QTPPLALETRA
Trigger: CGCCCTGGTCTCAAGCGCCAGTGGAGGTGTTTGCAACGGCGCTGTTTTTGGGGTAAACGTGATTCTAGTAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000224332.2
CDS CAA 72 bp TCTTGTTTCACAGGTGAAAGGTCTGGATCTGCAGCCTaGCTAGGGAAGCCAGACTGCAGCGTGGAGGAAGTC +
Preference number: 6 (lower is better)
Translates to: SCFTGERSGSAA*LGKPDCSVEEV
Trigger: GACTTCCTCCACGCTGCAGTCTGGCTTCCCTAGCAAGGCTGCAGATCCAGACCTTTCACCTGTGAAACAAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000224332.2
ENSMUST00000239157.2
CDS GCA 72 bp CACATGCAGGGCCCAAGTACCGAGTCAGCTCAACTTTaGTTCGGATCTTTTCTCCTGTGGGGCTCTGGTAAT +
Preference number: 6 (lower is better)
Translates to: HMQGPSTESAQL*FGSFLLWGSGN
Trigger: ATTACCAGAGCCCCACAGGAGAAAAGATCCGAAGCAAAGTTGAGCTGACTCGGTACTTGGGCCCTGCATGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS GCA 72 bp GTCTCTCTCCTGACCTCACTTCGCTGCAGCCCAACCTaGTGTTTCTTAGTCTTGGCTGGTTTAGAAGGCTTC +
Preference number: 6 (lower is better)
Translates to: VSLLTSLRCSPT*CFLVLAGLEGF
Trigger: GAAGCCTTCTAAACCAGCCAAGACTAAGAAACAGCAGGTTGGGCTGCAGCGAAGTGAGGTCAGGAGAGAGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS GCA 72 bp ATTTTTAAGGTCCTTGGACCTTGGCAACCAGGCTTCTaGATCTCGGAGGCGGGTTCCACCCAGGCTGAAAAT +
Preference number: 6 (lower is better)
Translates to: IFKVLGPWQPGF*ISEAGSTQAEN
Trigger: ATTTTCAGCCTGGGTGGAACCCGCCTCCGAGATGCAGAAGCCTGGTTGCCAAGGTCCAAGGACCTTAAAAAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
CDS CAA 90 bp GCACAGTCCCCACAGCCGACTCGCTTAAACATTCTCTGTTCGCGGTaGAAGGCGATTCTCTGTGCTCGACAATCTTTGCACAACGTCTTA +
Preference number: 6 (lower is better)
Translates to: AQSPQPTRLNILCSR*KAILCARQSLHNVL
Trigger: TAAGACGTTGTGCAAAGATTGTCGAGCACAGAGAATCGCCTTCAACCGCGAACAGAGAATGTTTAAGCGAGTCGGCTGTGGGGACTGTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000224332.2
ENSMUST00000239157.2
CDS GCA 72 bp GGTGCCTTGTCTGAAGTCAAACAGGGTAAGATCACATaGAGGGCCCAAGTACCGAGTCAGCTCAACTTTGCT +
Preference number: 6 (lower is better)
Translates to: GALSEVKQGKIT*RAQVPSQLNFA
Trigger: AGCAAAGTTGAGCTGACTCGGTACTTGGGCCCTGCATGTGATCTTACCCTGTTTGACTTCAGACAAGGCACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000239157.2
CDS CCA 72 bp CATTTTAGCTTCAGGATTTTTAAGGTCCTTGGACCTTaGCAACCAGGCTTCTGCATCTCGGAGGCGGGTTCC +
Preference number: 6 (lower is better)
Translates to: HFSFRIFKVLGP*QPGFCISEAGS
Trigger: GGAACCCGCCTCCGAGATGCAGAAGCCTGGTTGCCAAGGTCCAAGGACCTTAAAAATCCTGAAGCTAAAATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000224332.2
CDS CAA 72 bp CCACAGCCGACTCGCTTAAACATTCTCTGTTCGCGGTaGAAGGCGATTCTCTGTGCTCGACAATCTTTGCAC +
Preference number: 6 (lower is better)
Translates to: PQPTRLNILCSR*KAILCARQSLH
Trigger: GTGCAAAGATTGTCGAGCACAGAGAATCGCCTTCAACCGCGAACAGAGAATGTTTAAGCGAGTCGGCTGTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000224332.2
ENSMUST00000239157.2
CDS CCA 72 bp GTACCCTCTTGTAAAAACACAAAGTCTGTGTCAGGCTaGGGCAGTACAGAGCCTCTACCTGCTTGCTGCTTT +
Preference number: 6 (lower is better)
Translates to: VPSCKNTKSVSG*GSTEPLPACCF
Trigger: AAAGCAGCAAGCAGGTAGAGGCTCTGTACTGCCCCAGCCTGACACAGACTTTGTGTTTTTACAAGAGGGTAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000224332.2
ENSMUST00000239157.2
CDS CAA 72 bp TCGCGGTTGAAGGCGATTCTCTGTGCTCGACAATCTTaGCACAACGTCTTAAGTCTCTGCCTTTTGACACCA +
Preference number: 6 (lower is better)
Translates to: SRLKAILCARQS*HNVLSLCLLTP
Trigger: TGGTGTCAAAAGGCAGAGACTTAAGACGTTGTGCAAAGATTGTCGAGCACAGAGAATCGCCTTCAACCGCGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000224332.2
ENSMUST00000239157.2
CDS CAA 90 bp ATTCTCTGTTCGCGGTTGAAGGCGATTCTCTGTGCTCGACAATCTTaGCACAACGTCTTAAGTCTCTGCCTTTTGACACCATCCCATGAA +
Preference number: 6 (lower is better)
Translates to: ILCSRLKAILCARQS*HNVLSLCLLTPSHE
Trigger: TTCATGGGATGGTGTCAAAAGGCAGAGACTTAAGACGTTGTGCAAAGATTGTCGAGCACAGAGAATCGCCTTCAACCGCGAACAGAGAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000224332.2
ENSMUST00000239157.2
CDS CAA 90 bp CTCTGTGCTCGACAATCTTTGCACAACGTCTTAAGTCTCTGCCTTTaGACACCATCCCATGAAAAGTGGATTCCACAATTCTCACAGCAC +
Preference number: 6 (lower is better)
Translates to: LCARQSLHNVLSLCL*TPSHEKWIPQFSQH
Trigger: GTGCTGTGAGAATTGTGGAATCCACTTTTCATGGGATGGTGTCAAAAGGCAGAGACTTAAGACGTTGTGCAAAGATTGTCGAGCACAGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000224332.2
ENSMUST00000239157.2
CDS GCA 72 bp TGTGCTCGACAATCTTTGCACAACGTCTTAAGTCTCTaGCTTTTGACACCATCCCATGAAAAGTGGATTCCA +
Preference number: 6 (lower is better)
Translates to: CARQSLHNVLSL*LLTPSHEKWIP
Trigger: TGGAATCCACTTTTCATGGGATGGTGTCAAAAGGCAGAGACTTAAGACGTTGTGCAAAGATTGTCGAGCACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000224332.2
ENSMUST00000239157.2
CDS CAA 72 bp CGACAATCTTTGCACAACGTCTTAAGTCTCTGCCTTTaGACACCATCCCATGAAAAGTGGATTCCACAATTC +
Preference number: 6 (lower is better)
Translates to: RQSLHNVLSLCL*TPSHEKWIPQF
Trigger: GAATTGTGGAATCCACTTTTCATGGGATGGTGTCAAAAGGCAGAGACTTAAGACGTTGTGCAAAGATTGTCG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000097530.5
ENSMUST00000224047.2
ENSMUST00000224332.2
ENSMUST00000239157.2