RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MAVS (Mus musculus)

Ensembl gene IDs: ENSMUSG00000037523

Ensembl transcript IDs: ENSMUST00000041362.12, ENSMUST00000110199.3, ENSMUST00000130597.8

Found 234 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AGACATCCTCGCGACGGCCCCGGAGTTGGTCTGGAGGAGTTGCTCTaGATTCTCTACTGGGGACTCTGGTGGCTGGGTGTCCTGGACAGG +
Preference number: 1 (lower is better)
Translates to: RHPRDGPGVGLEELL*ILYWGLWWLGVLDR
Trigger: CCTGTCCAGGACACCCAGCCACCAGAGTCCCCAGTAGAGAATTCAGAGCAACTCCTCCAGACCAACTCCGGGGCCGTCGCGAGGATGTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR CCA 90 bp ATCTGCAGTGCCCGGATGAAGACCTCCACCCAGCCAGGCCGGCGCTaGAGATTATTGAAGAGTCCCCAGAGTGTGTCCCGGTTCCCGATC +
Preference number: 1 (lower is better)
Translates to: ICSARMKTSTQPGRR*RLLKSPQSVSRFPI
Trigger: GATCGGGAACCGGGACACACTCTGGGGACTCTTCAATAATCTCCAGCGCCGGCCTGGCTGGGTGGAGGTCTTCATCCGGGCACTGCAGAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR GCA 90 bp GCTGAGGCTTCACTGGGCCAGGCGCCTACTACGGTACAGCATCACTaGCAGGAATACAGCCAAGAGTGCACTGGTGGCCCCAAGCCACTT +
Preference number: 1 (lower is better)
Translates to: AEASLGQAPTTVQHH*QEYSQECTGGPKPL
Trigger: AAGTGGCTTGGGGCCACCAGTGCACTCTTGGCTGTATTCCTGGCAGTGATGCTGTACCGTAGTAGGCGCCTGGCCCAGTGAAGCCTCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR TCA 90 bp AGCCAAGAGTGCACTGGTGGCCCCAAGCCACTTAGCCCAGGGCATTaGACTGGCACAATGTTCTTCCTCTTCTTGGGGCTGCTGGGTGGC +
Preference number: 1 (lower is better)
Translates to: SQECTGGPKPLSPGH*TGTMFFLFLGLLGG
Trigger: GCCACCCAGCAGCCCCAAGAAGAGGAAGAACATTGTGCCAGTTCAATGCCCTGGGCTAAGTGGCTTGGGGCCACCAGTGCACTCTTGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR GCA 90 bp TGGAAGGGGCTGGAAGGAAACGGTTGGAGACACAGGTCCATAGGTTaGTATGGGAACAGAGGCAACATTTGCTGCGTGGGCGCCACCCAG +
Preference number: 1 (lower is better)
Translates to: WKGLEGNGWRHRSIG*YGNRGNICCVGATQ
Trigger: CTGGGTGGCGCCCACGCAGCAAATGTTGCCTCTGTTCCCATAGCAACCTATGGACCTGTGTCTCCAACCGTTTCCTTCCAGCCCCTTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR CCA 90 bp TGGACCCTCCGGGGTCTCCTTGGCTTGCTTGCTGTTCCTCTCAGGTaGTATTGTGTTGGCAGGTGCTTTGGCCACACTAGCAGGCACTCT +
Preference number: 1 (lower is better)
Translates to: WTLRGLLGLLAVPLR*YCVGRCFGHTSRHS
Trigger: AGAGTGCCTGCTAGTGTGGCCAAAGCACCTGCCAACACAATACCACCTGAGAGGAACAGCAAGCAAGCCAAGGAGACCCCGGAGGGTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR CCA 90 bp GCTATTTGGTCCAGTCTGGTTGCCTCCAGTGGTGACTTTGGTTGCTaGACCCTCCGGGGTCTCCTTGGCTTGCTTGCTGTTCCTCTCAGG +
Preference number: 1 (lower is better)
Translates to: AIWSSLVASSGDFGC*TLRGLLGLLAVPLR
Trigger: CCTGAGAGGAACAGCAAGCAAGCCAAGGAGACCCCGGAGGGTCCAGCAACCAAAGTCACCACTGGAGGCAACCAGACTGGACCAAATAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR CCA 90 bp GTCTGGAGGAGTTGCTCTGAATTCTCTACTGGGGACTCTGGTGGCTaGGTGTCCTGGACAGGCTTGGGGCAACTTGGTGTCTCTCGTAAG +
Preference number: 1 (lower is better)
Translates to: VWRSCSEFSTGDSGG*VSWTGLGQLGVSRK
Trigger: CTTACGAGAGACACCAAGTTGCCCCAAGCCTGTCCAGGACACCCAGCCACCAGAGTCCCCAGTAGAGAATTCAGAGCAACTCCTCCAGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR CCA 90 bp CTAATGGCAAGGTCCACAGAGCAGGCTGAGAATGGCTCGTCCAACTaGGATACCAGCACACCTGGCTTGCTCATCTCTGGTCCAGAGTGC +
Preference number: 1 (lower is better)
Translates to: LMARSTEQAENGSSN*DTSTPGLLISGPEC
Trigger: GCACTCTGGACCAGAGATGAGCAAGCCAGGTGTGCTGGTATCCCAGTTGGACGAGCCATTCTCAGCCTGCTCTGTGGACCTTGCCATTAG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR CCA 90 bp CAGGGCATTGAACTGGCACAATGTTCTTCCTCTTCTTGGGGCTGCTaGGTGGCTAGTGGCTCAGGGCTTCCTAATAGATCAGCACTGGGG +
Preference number: 1 (lower is better)
Translates to: QGIELAQCSSSSWGC*VASGSGLPNRSALG
Trigger: CCCCAGTGCTGATCTATTAGGAAGCCCTGAGCCACTAGCCACCCAGCAGCCCCAAGAAGAGGAAGAACATTGTGCCAGTTCAATGCCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR GCA 90 bp TGGTGGAGATACCTCCTTAGGAGCACAGAGCATGAACTCTTACACTaGCACGTGGGCAGGTCAGGAGCAATGGAGGTAACACAGTGCCTC +
Preference number: 1 (lower is better)
Translates to: WWRYLLRSTEHELLH*HVGRSGAMEVTQCL
Trigger: GAGGCACTGTGTTACCTCCATTGCTCCTGACCTGCCCACGTGGCAGTGTAAGAGTTCATGCTCTGTGCTCCTAAGGAGGTATCTCCACCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
ENSMUST00000130597.8
3UTR GCA 90 bp GATGAAGGCTGCTCTCTCAAAGACTGCCATTACCAATATGCACTCTaGCTCTCACACTCTCACCTTAGCTCAGCCAGCCAGGGCAGGAGG +
Preference number: 1 (lower is better)
Translates to: DEGCSLKDCHYQYAL*LSHSHLSSASQGRR
Trigger: CCTCCTGCCCTGGCTGGCTGAGCTAAGGTGAGAGTGTGAGAGGCAGAGTGCATATTGGTAATGGCAGTCTTTGAGAGAGCAGCCTTCATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
ENSMUST00000130597.8
3UTR CCA 90 bp GAGTTCTGCCCACTAGGTATCTCATCATCCAGTATAGGGAGAGAATaGAGACCAGGAGTGGAGAAGCGAGGAGGGGGTAAGGAGGTTGGA +
Preference number: 1 (lower is better)
Translates to: EFCPLGISSSSIGRE*RPGVEKRGGGKEVG
Trigger: TCCAACCTCCTTACCCCCTCCTCGCTTCTCCACTCCTGGTCTCCATTCTCTCCCTATACTGGATGATGAGATACCTAGTGGGCAGAACTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
ENSMUST00000130597.8
3UTR CCA 90 bp GTTTGTCCTCAGGGCAGTACGTGGAAGGGGCTGGAAGGAAACGGTTaGAGACACAGGTCCATAGGTTGCTATGGGAACAGAGGCAACATT +
Preference number: 1 (lower is better)
Translates to: VCPQGSTWKGLEGNG*RHRSIGCYGNRGNI
Trigger: AATGTTGCCTCTGTTCCCATAGCAACCTATGGACCTGTGTCTCCAACCGTTTCCTTCCAGCCCCTTCCACGTACTGCCCTGAGGACAAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR CCA 90 bp GCATTGAACTGGCACAATGTTCTTCCTCTTCTTGGGGCTGCTGGGTaGCTAGTGGCTCAGGGCTTCCTAATAGATCAGCACTGGGGCTTT +
Preference number: 1 (lower is better)
Translates to: ALNWHNVLPLLGAAG*LVAQGFLIDQHWGF
Trigger: AAAGCCCCAGTGCTGATCTATTAGGAAGCCCTGAGCCACTAGCCACCCAGCAGCCCCAAGAAGAGGAAGAACATTGTGCCAGTTCAATGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR TCA 90 bp TCTGCTAAAGGCCAGGGAAAGGGTGGAACTGATGCAAGCCCAGCCTaGGTTCTGCCCACTAGGTATCTCATCATCCAGTATAGGGAGAGA +
Preference number: 1 (lower is better)
Translates to: SAKGQGKGGTDASPA*VLPTRYLIIQYRER
Trigger: TCTCTCCCTATACTGGATGATGAGATACCTAGTGGGCAGAACTCAGGCTGGGCTTGCATCAGTTCCACCCTTTCCCTGGCCTTTAGCAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
ENSMUST00000130597.8
3UTR CCA 90 bp GCCAAGGCCTTAGACCAGGCTGCCGGTGGAAGGCATAAGATGCTATaGGAGCACTCATCAGTGTACCTACGCTTGTGTTTCAGAAGATCT +
Preference number: 1 (lower is better)
Translates to: AKALDQAAGGRHKML*EHSSVYLRLCFRRS
Trigger: AGATCTTCTGAAACACAAGCGTAGGTACACTGATGAGTGCTCCCATAGCATCTTATGCCTTCCACCGGCAGCCTGGTCTAAGGCCTTGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
ENSMUST00000130597.8
3UTR CCA 90 bp ACAGAATTGGTGAGTGTAGTACTGAAACAGGTGGCAGCTTTGGCCTaGTCACCAGCTCCCTTTGCAAAAGCTGATCCAGTGGACGAGGAG +
Preference number: 1 (lower is better)
Translates to: TELVSVVLKQVAALA*SPAPFAKADPVDEE
Trigger: CTCCTCGTCCACTGGATCAGCTTTTGCAAAGGGAGCTGGTGACCAGGCCAAAGCTGCCACCTGTTTCAGTACTACACTCACCAATTCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR TCA 90 bp ATCTCACAGGTAAGAAAAGTGAGGCACAGAGGTGAGGCCTACACCTaGCCAGGGAGGAGAAAGAAGCATGATGGAGATGAAGGCTGCTCT +
Preference number: 1 (lower is better)
Translates to: ISQVRKVRHRGEAYT*PGRRKKHDGDEGCS
Trigger: AGAGCAGCCTTCATCTCCATCATGCTTCTTTCTCCTCCCTGGTCAGGTGTAGGCCTCACCTCTGTGCCTCACTTTTCTTACCTGTGAGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
ENSMUST00000130597.8
3UTR TCA 90 bp TCTAAAGGACGAATACTCATTCTCCTCTGGACCATGGTTGGGTTCTaGGACCAAGGAGCTGCTAGGGCTAATGGCAAGGTCCACAGAGCA +
Preference number: 1 (lower is better)
Translates to: SKGRILILLWTMVGF*DQGAARANGKVHRA
Trigger: TGCTCTGTGGACCTTGCCATTAGCCCTAGCAGCTCCTTGGTCTCAGAACCCAACCATGGTCCAGAGGAGAATGAGTATTCGTCCTTTAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR TCA 90 bp CGCTGTATTGGTGAGCACAGTAGACGTCATCGCAGCAGTGGACTTTaGACTGAGGGGCAACTTGGAAGACATGGTTTTTACTGGGACCAA +
Preference number: 1 (lower is better)
Translates to: RCIGEHSRRHRSSGL*TEGQLGRHGFYWDQ
Trigger: TTGGTCCCAGTAAAAACCATGTCTTCCAAGTTGCCCCTCAGTTCAAAGTCCACTGCTGCGATGACGTCTACTGTGCTCACCAATACAGCG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR CCA 90 bp GGCTCAGGGCTTCCTAATAGATCAGCACTGGGGCTTTCGTCTACCTaGATTCTAAAGGACGAATACTCATTCTCCTCTGGACCATGGTTG +
Preference number: 1 (lower is better)
Translates to: GSGLPNRSALGLSST*ILKDEYSFSSGPWL
Trigger: CAACCATGGTCCAGAGGAGAATGAGTATTCGTCCTTTAGAATCCAGGTAGACGAAAGCCCCAGTGCTGATCTATTAGGAAGCCCTGAGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR GCA 90 bp AGGAGAAAGAAGCATGATGGAGATGAAGGCTGCTCTCTCAAAGACTaGCATTACCAATATGCACTCTGCCTCTCACACTCTCACCTTAGC +
Preference number: 1 (lower is better)
Translates to: RRKKHDGDEGCSLKD*HYQYALCLSHSHLS
Trigger: GCTAAGGTGAGAGTGTGAGAGGCAGAGTGCATATTGGTAATGGCAGTCTTTGAGAGAGCAGCCTTCATCTCCATCATGCTTCTTTCTCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
ENSMUST00000130597.8
3UTR-3UTR CCA 90 bp GCCTGCTGGTTAGGAGAGGGTATCAAAGAGCCACCAGACATCCTCGCGACGGCCGGTGGCTGGGTGTCCTaGACAGGCTTGGGGCAACTT +
Preference number: 2 (lower is better)
Translates to: ACWLGEGIKEPPDILATAGGWVS*TGLGQL
Trigger: AAGTTGCCCCAAGCCTGTCCAGGACACCCAGCCACC...GGCCGTCGCGAGGATGTCTGGTGGCTCTTTGATACCCTCTCCTAACCAGCAGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR CAA 90 bp GTGGAAGGGGCTGGAAGGAAACGGTTGGAGACACAGGTCCATAGGTaGCTATGGGAACAGAGGCAACATTTGCTGCGTGGGCGCCACCCA +
Preference number: 2 (lower is better)
Translates to: VEGAGRKRLETQVHR*LWEQRQHLLRGRHP
Trigger: TGGGTGGCGCCCACGCAGCAAATGTTGCCTCTGTTCCCATAGCAACCTATGGACCTGTGTCTCCAACCGTTTCCTTCCAGCCCCTTCCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR CAA 90 bp GTGGTGACTTTGGTTGCTGGACCCTCCGGGGTCTCCTTGGCTTGCTaGCTGTTCCTCTCAGGTGGTATTGTGTTGGCAGGTGCTTTGGCC +
Preference number: 2 (lower is better)
Translates to: VVTLVAGPSGVSLAC*LFLSGGIVLAGALA
Trigger: GGCCAAAGCACCTGCCAACACAATACCACCTGAGAGGAACAGCAAGCAAGCCAAGGAGACCCCGGAGGGTCCAGCAACCAAAGTCACCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR-3UTR GCA 90 bp GACTGGCTGTGGAGAGGGCCCAAAGGGGCAGAGCACTCAAAGCTCCCTAGAGACCATGAACTCTTACACTaGCACGTGGGCAGGTCAGGA +
Preference number: 2 (lower is better)
Translates to: DWLWRGPKGAEHSKLPRDHELLH*HVGRSG
Trigger: TCCTGACCTGCCCACGTGGCAGTGTAAGAGTTCATG...GTCTCTAGGGAGCTTTGAGTGCTCTGCCCCTTTGGGCCCTCTCCACAGCCAGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
ENSMUST00000130597.8
3UTR-3UTR CCA 90 bp TATGGGAACAGAGGCAACATTTGCTGCGTGGGCGCCACCCAGTTCTGGTTCTTGTACTGGGGACTCTGGTaGCTGGGTGTCCTGGACAGG +
Preference number: 2 (lower is better)
Translates to: YGNRGNICCVGATQFWFLYWGLW*LGVLDR
Trigger: CCTGTCCAGGACACCCAGCCACCAGAGTCCCCAGTA...CAAGAACCAGAACTGGGTGGCGCCCACGCAGCAAATGTTGCCTCTGTTCCCATA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR CAA 90 bp TTGCCTCCAGTGGTGACTTTGGTTGCTGGACCCTCCGGGGTCTCCTaGGCTTGCTTGCTGTTCCTCTCAGGTGGTATTGTGTTGGCAGGT +
Preference number: 2 (lower is better)
Translates to: LPPVVTLVAGPSGVS*ACLLFLSGGIVLAG
Trigger: ACCTGCCAACACAATACCACCTGAGAGGAACAGCAAGCAAGCCAAGGAGACCCCGGAGGGTCCAGCAACCAAAGTCACCACTGGAGGCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR-3UTR TCA 90 bp TATGGGAACAGAGGCAACATTTGCTGCGTGGGCGCCACCCAGTTCTGGTTCTTGTGGTCAGGGATGTTGTaGCCTGGCGCAAATGCAGAG +
Preference number: 2 (lower is better)
Translates to: YGNRGNICCVGATQFWFLWSGML*PGANAE
Trigger: CTCTGCATTTGCGCCAGGTCACAACATCCCTGACCA...CAAGAACCAGAACTGGGTGGCGCCCACGCAGCAAATGTTGCCTCTGTTCCCATA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR-3UTR GCA 90 bp GACTGGCTGTGGAGAGGGCCCAAAGGGGCAGAGCACTCAAAGCTCCCTAGAGACATGGAGGTAACACAGTaGCTCCAAAAGCTGAAGACC +
Preference number: 2 (lower is better)
Translates to: DWLWRGPKGAEHSKLPRDMEVTQ*LQKLKT
Trigger: GGTCTTCAGCTTTTGGAGGCACTGTGTTACCTCCAT...GTCTCTAGGGAGCTTTGAGTGCTCTGCCCCTTTGGGCCCTCTCCACAGCCAGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
ENSMUST00000130597.8
3UTR-3UTR CCA 90 bp TCCTCAGGCCTGGCAGTTGCTTCTGGCTTTCTTAAGAGTCCACAGAGAACCTCCACCCTCAGGGTTGACTaGCTGTGGAGAGGGCCCAAA +
Preference number: 2 (lower is better)
Translates to: SSGLAVASGFLKSPQRTSTLRVD*LWRGPK
Trigger: TTTGGGCCCTCTCCACAGCCAGTCAACCCTGAGGGT...GGAGGTTCTCTGTGGACTCTTAAGAAAGCCAGAAGCAACTGCCAGGCCTGAGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
ENSMUST00000130597.8
3UTR-3UTR CCA 90 bp AGGCAACATTTGCTGCGTGGGCGCCACCCAGTTCTGGTTCTTGCTCTTGATGCTAGGGATGTTGTGACCTaGCGCAAATGCAGAGGGTCC +
Preference number: 2 (lower is better)
Translates to: RQHLLRGRHPVLVLALDARDVVT*RKCRGS
Trigger: GGACCCTCTGCATTTGCGCCAGGTCACAACATCCCT...AGCATCAAGAGCAAGAACCAGAACTGGGTGGCGCCCACGCAGCAAATGTTGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR CAA 90 bp GGTTTGTCCTCAGGGCAGTACGTGGAAGGGGCTGGAAGGAAACGGTaGGAGACACAGGTCCATAGGTTGCTATGGGAACAGAGGCAACAT +
Preference number: 2 (lower is better)
Translates to: GLSSGQYVEGAGRKR*ETQVHRLLWEQRQH
Trigger: ATGTTGCCTCTGTTCCCATAGCAACCTATGGACCTGTGTCTCCAACCGTTTCCTTCCAGCCCCTTCCACGTACTGCCCTGAGGACAAACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR-3UTR TCA 90 bp GATGGAGATGAAGGCTGCTCTCTCAAAGACTGCCATTACCAATATGCACTCTGCTCTGCAGTGCCCGGATaGAGACCTCCACCCAGCCAG +
Preference number: 2 (lower is better)
Translates to: DGDEGCSLKDCHYQYALCSAVPG*RPPPSQ
Trigger: CTGGCTGGGTGGAGGTCTTCATCCGGGCACTGCAGA...GCAGAGTGCATATTGGTAATGGCAGTCTTTGAGAGAGCAGCCTTCATCTCCATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR-3UTR CCA 90 bp CCCACTAGGTATCTCATCATCCAGTATAGGGAGAGAATGGAGACCAGGAGTGGAAGGGTTGACTGGCTGTaGAGAGGGCCCAAAGGGGCA +
Preference number: 2 (lower is better)
Translates to: PTRYLIIQYRERMETRSGRVDWL*RGPKGA
Trigger: TGCCCCTTTGGGCCCTCTCCACAGCCAGTCAACCCT...TCCACTCCTGGTCTCCATTCTCTCCCTATACTGGATGATGAGATACCTAGTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
ENSMUST00000130597.8
3UTR-3UTR CCA 90 bp CCCACTAGGTATCTCATCATCCAGTATAGGGAGAGAATGGAGACCAGGAGTGGACTCTACTGGGGACTCTaGTGGCTGGGTGTCCTGGAC +
Preference number: 2 (lower is better)
Translates to: PTRYLIIQYRERMETRSGLYWGL*WLGVLD
Trigger: GTCCAGGACACCCAGCCACCAGAGTCCCCAGTAGAG...TCCACTCCTGGTCTCCATTCTCTCCCTATACTGGATGATGAGATACCTAGTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR-3UTR TCA 90 bp CACTGCCACGTGGGCAGGTCAGGAGCAATGGAGGTAACACAGTGCCTCCAAAAGCATGCTTGGCAGAACTaGGCAAGAGAACAGCATACA +
Preference number: 2 (lower is better)
Translates to: HCHVGRSGAMEVTQCLQKHAWQN*AREQHT
Trigger: TGTATGCTGTTCTCTTGCTCAGTTCTGCCAAGCATG...CTTTTGGAGGCACTGTGTTACCTCCATTGCTCCTGACCTGCCCACGTGGCAGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
ENSMUST00000130597.8
3UTR-3UTR CCA 90 bp GATGGAGATGAAGGCTGCTCTCTCAAAGACTGCCATTACCAATATGCACTCTGCAGGGTTGACTGGCTGTaGAGAGGGCCCAAAGGGGCA +
Preference number: 2 (lower is better)
Translates to: DGDEGCSLKDCHYQYALCRVDWL*RGPKGA
Trigger: TGCCCCTTTGGGCCCTCTCCACAGCCAGTCAACCCT...GCAGAGTGCATATTGGTAATGGCAGTCTTTGAGAGAGCAGCCTTCATCTCCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
ENSMUST00000130597.8
3UTR-3UTR CCA 90 bp GCATTGTCAACAGTGCGATACCTCCTCATCTTCAGGCTTGGGCCAACAGGGATAAATGGAGACCAGGAGTaGAGAAGCGAGGAGGGGGTA +
Preference number: 2 (lower is better)
Translates to: ALSTVRYLLIFRLGPTGINGDQE*RSEEGV
Trigger: TACCCCCTCCTCGCTTCTCCACTCCTGGTCTCCATT...TATCCCTGTTGGCCCAAGCCTGAAGATGAGGAGGTATCGCACTGTTGACAATGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
ENSMUST00000130597.8
3UTR-3UTR CCA 90 bp GTGGCCCCAAGCCACTTAGCCCAGGGCATTGAACTGGCACAATGTTCTTCCTCTATTAGCATGTATGTGTaGGTGTGGGCGTGGGTCTGT +
Preference number: 2 (lower is better)
Translates to: VAPSHLAQGIELAQCSSSISMYV*VWAWVC
Trigger: ACAGACCCACGCCCACACCCACACATACATGCTAAT...AGAGGAAGAACATTGTGCCAGTTCAATGCCCTGGGCTAAGTGGCTTGGGGCCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR-3UTR CCA 90 bp AAGACTAGAGAAGCTAGACATCTGCTAAAGGCCAGGGAAAGGGTGGAACTGATGTCTTCTTGGGGCTGCTaGGTGGCTAGTGGCTCAGGG +
Preference number: 2 (lower is better)
Translates to: KTREARHLLKARERVELMSSWGC*VASGSG
Trigger: CCCTGAGCCACTAGCCACCCAGCAGCCCCAAGAAGA...CATCAGTTCCACCCTTTCCCTGGCCTTTAGCAGATGTCTAGCTTCTCTAGTCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR-3UTR TCA 90 bp GGGCAAGAACTTGTACTCACACCCTCTGAGATAAGTACTAGGCAAGTATCTGTAACTCACCCTCAGGGTTaGCTGGCTGTGGAGAGGGCC +
Preference number: 2 (lower is better)
Translates to: GQELVLTPSEISTRQVSVTHPQG*LAVERA
Trigger: GGCCCTCTCCACAGCCAGTCAACCCTGAGGGTGAGT...TACAGATACTTGCCTAGTACTTATCTCAGAGGGTGTGAGTACAAGTTCTTGCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
ENSMUST00000130597.8
3UTR-3UTR TCA 90 bp CCCACTAGGTATCTCATCATCCAGTATAGGGAGAGAATGGAGACCAGGAGTGGAGATGCAAGCCCAGCCTaGGTTCTGCCCACTAGGTAT +
Preference number: 2 (lower is better)
Translates to: PTRYLIIQYRERMETRSGDASPA*VLPTRY
Trigger: ATACCTAGTGGGCAGAACTCAGGCTGGGCTTGCATC...TCCACTCCTGGTCTCCATTCTCTCCCTATACTGGATGATGAGATACCTAGTGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
ENSMUST00000130597.8
3UTR-3UTR GCA 90 bp CTGAGGGCTGAGAGCCTGCTGGTTAGGAGAGGGTATCAAAGAGCCACCAGACATATGGAGGTAACACAGTaGCTCCAAAAGCTGAAGACC +
Preference number: 2 (lower is better)
Translates to: LRAESLLVRRGYQRATRHMEVTQ*LQKLKT
Trigger: GGTCTTCAGCTTTTGGAGGCACTGTGTTACCTCCAT...ATGTCTGGTGGCTCTTTGATACCCTCTCCTAACCAGCAGGCTCTCAGCCCTCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR-3UTR CCA 90 bp GATGGAGATGAAGGCTGCTCTCTCAAAGACTGCCATTACCAATATGCACTCTGCACCCTCAGGGTTGACTaGCTGTGGAGAGGGCCCAAA +
Preference number: 2 (lower is better)
Translates to: DGDEGCSLKDCHYQYALCTLRVD*LWRGPK
Trigger: TTTGGGCCCTCTCCACAGCCAGTCAACCCTGAGGGT...GCAGAGTGCATATTGGTAATGGCAGTCTTTGAGAGAGCAGCCTTCATCTCCATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
ENSMUST00000130597.8
3UTR-3UTR CCA 90 bp AAGACTAGAGAAGCTAGACATCTGCTAAAGGCCAGGGAAAGGGTGGAACTGATGGCAACATTTGCTGCGTaGGCGCCACCCAGTTCTGGT +
Preference number: 2 (lower is better)
Translates to: KTREARHLLKARERVELMATFAA*APPSSG
Trigger: ACCAGAACTGGGTGGCGCCCACGCAGCAAATGTTGC...CATCAGTTCCACCCTTTCCCTGGCCTTTAGCAGATGTCTAGCTTCTCTAGTCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR-3UTR CCA 90 bp AAGACTAGAGAAGCTAGACATCTGCTAAAGGCCAGGGAAAGGGTGGAACTGATGGTGGCAGCTTTGGCCTaGTCACCAGCTCCCTTTGCA +
Preference number: 2 (lower is better)
Translates to: KTREARHLLKARERVELMVAALA*SPAPFA
Trigger: TGCAAAGGGAGCTGGTGACCAGGCCAAAGCTGCCAC...CATCAGTTCCACCCTTTCCCTGGCCTTTAGCAGATGTCTAGCTTCTCTAGTCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR CAA 90 bp ACCTGGATTCTAAAGGACGAATACTCATTCTCCTCTGGACCATGGTaGGGTTCTGAGACCAAGGAGCTGCTAGGGCTAATGGCAAGGTCC +
Preference number: 2 (lower is better)
Translates to: TWILKDEYSFSSGPW*GSETKELLGLMARS
Trigger: GGACCTTGCCATTAGCCCTAGCAGCTCCTTGGTCTCAGAACCCAACCATGGTCCAGAGGAGAATGAGTATTCGTCCTTTAGAATCCAGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR-3UTR TCA 90 bp CTTCAGGCTTGGGCCAACAGGGATAAAGCTGGTGGAGATACCTCCTTAGGAGCACATGCTTGGCAGAACTaGGCAAGAGAACAGCATACA +
Preference number: 2 (lower is better)
Translates to: LQAWANRDKAGGDTSLGAHAWQN*AREQHT
Trigger: TGTATGCTGTTCTCTTGCTCAGTTCTGCCAAGCATG...TGCTCCTAAGGAGGTATCTCCACCAGCTTTATCCCTGTTGGCCCAAGCCTGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
ENSMUST00000130597.8
3UTR-3UTR TCA 90 bp AGCATGATGGAGATGAAGGCTGCTCTCTCAAAGACTGCCATTACCAATATGCACGGGAAAGGGTGGAACTaGTGCAAGCCCAGCCTGAGT +
Preference number: 2 (lower is better)
Translates to: SMMEMKAALSKTAITNMHGKGWN*CKPSLS
Trigger: ACTCAGGCTGGGCTTGCATCAGTTCCACCCTTTCCC...GTGCATATTGGTAATGGCAGTCTTTGAGAGAGCAGCCTTCATCTCCATCATGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
ENSMUST00000130597.8
3UTR-3UTR CCA 90 bp GCAAGTATCTGTATCCTTCAAACTCAGAGGAGCCCAGTAAAAGGAAGAGCTGCCGGCGCCACCCAGTTCTaGTTCTTGCTCTTGATGCTC +
Preference number: 2 (lower is better)
Translates to: ASICILQTQRSPVKGRAAGATQF*FLLLML
Trigger: GAGCATCAAGAGCAAGAACCAGAACTGGGTGGCGCC...GGCAGCTCTTCCTTTTACTGGGCTCCTCTGAGTTTGAAGGATACAGATACTTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR-3UTR CCA 90 bp GTGGCCCCAAGCCACTTAGCCCAGGGCATTGAACTGGCACAATGTTCTTCCTCTGTCCATAGGTTGCTATaGGAACAGAGGCAACATTTG +
Preference number: 2 (lower is better)
Translates to: VAPSHLAQGIELAQCSSSVHRLL*EQRQHL
Trigger: CAAATGTTGCCTCTGTTCCCATAGCAACCTATGGAC...AGAGGAAGAACATTGTGCCAGTTCAATGCCCTGGGCTAAGTGGCTTGGGGCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR-3UTR TCA 90 bp GGGCAAGAACTTGTACTCACACCCTCTGAGATAAGTACTAGGCAAGTATCTGTAGGGAAAGGGTGGAACTaGTGCAAGCCCAGCCTGAGT +
Preference number: 2 (lower is better)
Translates to: GQELVLTPSEISTRQVSVGKGWN*CKPSLS
Trigger: ACTCAGGCTGGGCTTGCATCAGTTCCACCCTTTCCC...TACAGATACTTGCCTAGTACTTATCTCAGAGGGTGTGAGTACAAGTTCTTGCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
ENSMUST00000130597.8
3UTR-3UTR GCA 90 bp GCATTGTCAACAGTGCGATACCTCCTCATCTTCAGGCTTGGGCCAACAGGGATAATGGAGGTAACACAGTaGCTCCAAAAGCTGAAGACC +
Preference number: 2 (lower is better)
Translates to: ALSTVRYLLIFRLGPTGIMEVTQ*LQKLKT
Trigger: GGTCTTCAGCTTTTGGAGGCACTGTGTTACCTCCAT...TATCCCTGTTGGCCCAAGCCTGAAGATGAGGAGGTATCGCACTGTTGACAATGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
ENSMUST00000130597.8
3UTR-3UTR GCA 90 bp AATATATTAGCATGTATGTGTGGGTGTGGGCGTGGGTCTGTGGGTATGTGTGTGCATGAACTCTTACACTaGCACGTGGGCAGGTCAGGA +
Preference number: 2 (lower is better)
Translates to: NILACMCGCGRGSVGMCVHELLH*HVGRSG
Trigger: TCCTGACCTGCCCACGTGGCAGTGTAAGAGTTCATG...CACACACATACCCACAGACCCACGCCCACACCCACACATACATGCTAATATATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
ENSMUST00000130597.8
3UTR-3UTR CCA 90 bp TTCGTCTACCTGGATTCTAAAGGACGAATACTCATTCTCCTCTGGACCATGGTTAACAGGTGGCAGCTTTaGCCTGGTCACCAGCTCCCT +
Preference number: 2 (lower is better)
Translates to: FVYLDSKGRILILLWTMVNRWQL*PGHQLP
Trigger: AGGGAGCTGGTGACCAGGCCAAAGCTGCCACCTGTT...AACCATGGTCCAGAGGAGAATGAGTATTCGTCCTTTAGAATCCAGGTAGACGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR-3UTR TCA 90 bp CACTGCCACGTGGGCAGGTCAGGAGCAATGGAGGTAACACAGTGCCTCCAAAAGCCAGAAGATGACATATaGACCAGGATAAAACAATGT +
Preference number: 2 (lower is better)
Translates to: HCHVGRSGAMEVTQCLQKPEDDI*TRIKQC
Trigger: ACATTGTTTTATCCTGGTTCATATGTCATCTTCTGG...CTTTTGGAGGCACTGTGTTACCTCCATTGCTCCTGACCTGCCCACGTGGCAGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
ENSMUST00000130597.8
3UTR-3UTR TCA 90 bp GAGATGAGGGGCATTGTCAACAGTGCGATACCTCCTCATCTTCAGGCTTGGGCCCTGAAGACCAGAAGATaGCATATGAACCAGGATAAA +
Preference number: 2 (lower is better)
Translates to: EMRGIVNSAIPPHLQAWALKTRR*HMNQDK
Trigger: TTTATCCTGGTTCATATGTCATCTTCTGGTCTTCAG...GGCCCAAGCCTGAAGATGAGGAGGTATCGCACTGTTGACAATGCCCCTCATCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
ENSMUST00000130597.8
3UTR-3UTR TCA 90 bp ATACCTCCTCATCTTCAGGCTTGGGCCAACAGGGATAAAGCTGGTGGAGATACCAGTGCCTCCAAAAGCTaGAGACCAGAAGATGACATA +
Preference number: 2 (lower is better)
Translates to: IPPHLQAWANRDKAGGDTSASKS*RPEDDI
Trigger: TATGTCATCTTCTGGTCTTCAGCTTTTGGAGGCACT...GGTATCTCCACCAGCTTTATCCCTGTTGGCCCAAGCCTGAAGATGAGGAGGTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
ENSMUST00000130597.8
3UTR-3UTR GCA 90 bp GCATTGTCAACAGTGCGATACCTCCTCATCTTCAGGCTTGGGCCAACAGGGATATACCAATATGCACTCTaGCTCTCACACTCTCACCTT +
Preference number: 2 (lower is better)
Translates to: ALSTVRYLLIFRLGPTGIYQYAL*LSHSHL
Trigger: AAGGTGAGAGTGTGAGAGGCAGAGTGCATATTGGTA...TATCCCTGTTGGCCCAAGCCTGAAGATGAGGAGGTATCGCACTGTTGACAATGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
ENSMUST00000130597.8
3UTR-3UTR TCA 90 bp AATATATTAGCATGTATGTGTGGGTGTGGGCGTGGGTCTGTGGGTATGTGTGTGCATGCTTGGCAGAACTaGGCAAGAGAACAGCATACA +
Preference number: 2 (lower is better)
Translates to: NILACMCGCGRGSVGMCVHAWQN*AREQHT
Trigger: TGTATGCTGTTCTCTTGCTCAGTTCTGCCAAGCATG...CACACACATACCCACAGACCCACGCCCACACCCACACATACATGCTAATATATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
ENSMUST00000130597.8
3UTR-3UTR GCA 90 bp AATATATTAGCATGTATGTGTGGGTGTGGGCGTGGGTCTGTGGGTATGTGTGTGTTGGTCTGGAGGAGTTaGTCTGAATTCTCTACTGGG +
Preference number: 2 (lower is better)
Translates to: NILACMCGCGRGSVGMCVLVWRS*SEFSTG
Trigger: CCCAGTAGAGAATTCAGAGCAACTCCTCCAGACCAA...CACACACATACCCACAGACCCACGCCCACACCCACACATACATGCTAATATATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR-3UTR CCA 90 bp CTCTCAAAGACTGCCATTACCAATATGCACTCTGCCTCTCACACTCTCACCTTAATTAGCATGTATGTGTaGGTGTGGGCGTGGGTCTGT +
Preference number: 2 (lower is better)
Translates to: LSKTAITNMHSASHTLTLISMYV*VWAWVC
Trigger: ACAGACCCACGCCCACACCCACACATACATGCTAAT...TAAGGTGAGAGTGTGAGAGGCAGAGTGCATATTGGTAATGGCAGTCTTTGAGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
ENSMUST00000130597.8
3UTR-3UTR TCA 90 bp GCAAGTATCTGTATCCTTCAAACTCAGAGGAGCCCAGTAAAAGGAAGAGCTGCCAGTGCCTCCAAAAGCTaGAGACCAGAAGATGACATA +
Preference number: 2 (lower is better)
Translates to: ASICILQTQRSPVKGRAASASKS*RPEDDI
Trigger: TATGTCATCTTCTGGTCTTCAGCTTTTGGAGGCACT...GGCAGCTCTTCCTTTTACTGGGCTCCTCTGAGTTTGAAGGATACAGATACTTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
ENSMUST00000130597.8
3UTR-3UTR TCA 90 bp CAGGGAGGAGAAAGAAGCATGATGGAGATGAAGGCTGCTCTCTCAAAGACTGCCCCAGAAGATGACATATaGACCAGGATAAAACAATGT +
Preference number: 2 (lower is better)
Translates to: QGGERSMMEMKAALSKTAPEDDI*TRIKQC
Trigger: ACATTGTTTTATCCTGGTTCATATGTCATCTTCTGG...GGCAGTCTTTGAGAGAGCAGCCTTCATCTCCATCATGCTTCTTTCTCCTCCCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
ENSMUST00000130597.8
3UTR-3UTR TCA 90 bp AAGACTAGAGAAGCTAGACATCTGCTAAAGGCCAGGGAAAGGGTGGAACTGATGCTGAAGACCAGAAGATaGCATATGAACCAGGATAAA +
Preference number: 2 (lower is better)
Translates to: KTREARHLLKARERVELMLKTRR*HMNQDK
Trigger: TTTATCCTGGTTCATATGTCATCTTCTGGTCTTCAG...CATCAGTTCCACCCTTTCCCTGGCCTTTAGCAGATGTCTAGCTTCTCTAGTCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
ENSMUST00000130597.8
3UTR-3UTR TCA 90 bp AGCATGATGGAGATGAAGGCTGCTCTCTCAAAGACTGCCATTACCAATATGCACCTGAAGACCAGAAGATaGCATATGAACCAGGATAAA +
Preference number: 2 (lower is better)
Translates to: SMMEMKAALSKTAITNMHLKTRR*HMNQDK
Trigger: TTTATCCTGGTTCATATGTCATCTTCTGGTCTTCAG...GTGCATATTGGTAATGGCAGTCTTTGAGAGAGCAGCCTTCATCTCCATCATGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
ENSMUST00000130597.8
3UTR TCA 72 bp CCAGCCCAGGCAGCTCACAGATCTGCAGTGCCCGGATaGAGACCTCCACCCAGCCAGGCCGGCGCTGGAGAT +
Preference number: 3 (lower is better)
Translates to: PAQAAHRSAVPG*RPPPSQAGAGD
Trigger: ATCTCCAGCGCCGGCCTGGCTGGGTGGAGGTCTTCATCCGGGCACTGCAGATCTGTGAGCTGCCTGGGCTGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR CCA 72 bp GCCCGGATGAAGACCTCCACCCAGCCAGGCCGGCGCTaGAGATTATTGAAGAGTCCCCAGAGTGTGTCCCGG +
Preference number: 3 (lower is better)
Translates to: ARMKTSTQPGRR*RLLKSPQSVSR
Trigger: CCGGGACACACTCTGGGGACTCTTCAATAATCTCCAGCGCCGGCCTGGCTGGGTGGAGGTCTTCATCCGGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR GCA 72 bp CTAGAGACCAGCCACTCTGTTACTCCCAGGCTCTCCTaGCAAGGCCTTAGACCAGGCTGCCGGTGGAAGGCA +
Preference number: 3 (lower is better)
Translates to: LETSHSVTPRLS*QGLRPGCRWKA
Trigger: TGCCTTCCACCGGCAGCCTGGTCTAAGGCCTTGGCAGGAGAGCCTGGGAGTAACAGAGTGGCTGGTCTCTAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
ENSMUST00000130597.8
3UTR GCA 72 bp ATCCTCGCGACGGCCCCGGAGTTGGTCTGGAGGAGTTaGTCTGAATTCTCTACTGGGGACTCTGGTGGCTGG +
Preference number: 3 (lower is better)
Translates to: ILATAPELVWRS*SEFSTGDSGGW
Trigger: CCAGCCACCAGAGTCCCCAGTAGAGAATTCAGAGCAACTCCTCCAGACCAACTCCGGGGCCGTCGCGAGGAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR GCA 72 bp TCACTGGGCCAGGCGCCTACTACGGTACAGCATCACTaGCAGGAATACAGCCAAGAGTGCACTGGTGGCCCC +
Preference number: 3 (lower is better)
Translates to: SLGQAPTTVQHH*QEYSQECTGGP
Trigger: GGGGCCACCAGTGCACTCTTGGCTGTATTCCTGGCAGTGATGCTGTACCGTAGTAGGCGCCTGGCCCAGTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR-3UTR CAA 90 bp AAGGAGCTGCTAGGGCTAATGGCAAGGTCCACAGAGCAGGCTGAGAATGGCTCGGACTCACCCTCAGGGTaGACTGGCTGTGGAGAGGGC +
Preference number: 3 (lower is better)
Translates to: KELLGLMARSTEQAENGSDSPSG*TGCGEG
Trigger: GCCCTCTCCACAGCCAGTCAACCCTGAGGGTGAGTC...CGAGCCATTCTCAGCCTGCTCTGTGGACCTTGCCATTAGCCCTAGCAGCTCCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR CCA 72 bp AGAACCTCCAGACTCACCCTCAGGGTTGACTGGCTGTaGAGAGGGCCCAAAGGGGCAGAGCACTCAAAGCTC +
Preference number: 3 (lower is better)
Translates to: RTSRLTLRVDWL*RGPKGAEHSKL
Trigger: GAGCTTTGAGTGCTCTGCCCCTTTGGGCCCTCTCCACAGCCAGTCAACCCTGAGGGTGAGTCTGGAGGTTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
ENSMUST00000130597.8
3UTR-3UTR CAA 90 bp GTGGCCCCAAGCCACTTAGCCCAGGGCATTGAACTGGCACAATGTTCTTCCTCTCCCTCCGGGGTCTCCTaGGCTTGCTTGCTGTTCCTC +
Preference number: 3 (lower is better)
Translates to: VAPSHLAQGIELAQCSSSPSGVS*ACLLFL
Trigger: GAGGAACAGCAAGCAAGCCAAGGAGACCCCGGAGGG...AGAGGAAGAACATTGTGCCAGTTCAATGCCCTGGGCTAAGTGGCTTGGGGCCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR-3UTR CAA 90 bp AAGGAGCTGCTAGGGCTAATGGCAAGGTCCACAGAGCAGGCTGAGAATGGCTCGGAGGGGGTAAGGAGGTaGGAGAAAAGCTCCCTCCCA +
Preference number: 3 (lower is better)
Translates to: KELLGLMARSTEQAENGSEGVRR*EKSSLP
Trigger: TGGGAGGGAGCTTTTCTCCAACCTCCTTACCCCCTC...CGAGCCATTCTCAGCCTGCTCTGTGGACCTTGCCATTAGCCCTAGCAGCTCCTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR GCA 72 bp TGGTTGCTGGACCCTCCGGGGTCTCCTTGGCTTGCTTaGTGTTCCTCTCAGGTGGTATTGTGTTGGCAGGTG +
Preference number: 3 (lower is better)
Translates to: WLLDPPGSPWLA*CSSQVVLCWQV
Trigger: CACCTGCCAACACAATACCACCTGAGAGGAACAGCAAGCAAGCCAAGGAGACCCCGGAGGGTCCAGCAACCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR GCA 72 bp ACGGTACAGCATCACTGCCAGGAATACAGCCAAGAGTaGACTGGTGGCCCCAAGCCACTTAGCCCAGGGCAT +
Preference number: 3 (lower is better)
Translates to: TVQHHCQEYSQE*TGGPKPLSPGH
Trigger: ATGCCCTGGGCTAAGTGGCTTGGGGCCACCAGTGCACTCTTGGCTGTATTCCTGGCAGTGATGCTGTACCGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR CCA 72 bp AGAGGCAACATTTGCTGCGTGGGCGCCACCCAGTTCTaGTTCTTGCTCTTGATGCTCTCTGGAGGGCTGAGG +
Preference number: 3 (lower is better)
Translates to: RGNICCVGATQF*FLLLMLSGGLR
Trigger: CCTCAGCCCTCCAGAGAGCATCAAGAGCAAGAACCAGAACTGGGTGGCGCCCACGCAGCAAATGTTGCCTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR CCA 72 bp GACCCCAGACAAGAGGTTTGTCCTCAGGGCAGTACGTaGAAGGGGCTGGAAGGAAACGGTTGGAGACACAGG +
Preference number: 3 (lower is better)
Translates to: DPRQEVCPQGST*KGLEGNGWRHR
Trigger: CCTGTGTCTCCAACCGTTTCCTTCCAGCCCCTTCCACGTACTGCCCTGAGGACAAACCTCTTGTCTGGGGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR CCA 72 bp TCCAGTCTGGTTGCCTCCAGTGGTGACTTTGGTTGCTaGACCCTCCGGGGTCTCCTTGGCTTGCTTGCTGTT +
Preference number: 3 (lower is better)
Translates to: SSLVASSGDFGC*TLRGLLGLLAV
Trigger: AACAGCAAGCAAGCCAAGGAGACCCCGGAGGGTCCAGCAACCAAAGTCACCACTGGAGGCAACCAGACTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR-3UTR CAA 90 bp GAGGGTCCAGAAACCGCAGCAGGAAAGTCTGGTAACTGCAGTGGCTCTAGGGAGCGGCGCTGGAGATTATaGAAGAGTCCCCAGAGTGTG +
Preference number: 3 (lower is better)
Translates to: EGPETAAGKSGNCSGSRERRWRL*KSPQSV
Trigger: CACACTCTGGGGACTCTTCAATAATCTCCAGCGCCG...CTCCCTAGAGCCACTGCAGTTACCAGACTTTCCTGCTGCGGTTTCTGGACCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR TCA 72 bp TACTGCTATTTGGTCCAGTCTGGTTGCCTCCAGTGGTaGCTTTGGTTGCTGGACCCTCCGGGGTCTCCTTGG +
Preference number: 3 (lower is better)
Translates to: YCYLVQSGCLQW*LWLLDPPGSPW
Trigger: CCAAGGAGACCCCGGAGGGTCCAGCAACCAAAGTCACCACTGGAGGCAACCAGACTGGACCAAATAGCAGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR TCA 72 bp TGCACTGGTGGCCCCAAGCCACTTAGCCCAGGGCATTaGACTGGCACAATGTTCTTCCTCTTCTTGGGGCTG +
Preference number: 3 (lower is better)
Translates to: CTGGPKPLSPGH*TGTMFFLFLGL
Trigger: CAGCCCCAAGAAGAGGAAGAACATTGTGCCAGTTCAATGCCCTGGGCTAAGTGGCTTGGGGCCACCAGTGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR CCA 72 bp AGTTGCTCTGAATTCTCTACTGGGGACTCTGGTGGCTaGGTGTCCTGGACAGGCTTGGGGCAACTTGGTGTC +
Preference number: 3 (lower is better)
Translates to: SCSEFSTGDSGG*VSWTGLGQLGV
Trigger: GACACCAAGTTGCCCCAAGCCTGTCCAGGACACCCAGCCACCAGAGTCCCCAGTAGAGAATTCAGAGCAACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR CCA 72 bp CGGGGTCTCCTTGGCTTGCTTGCTGTTCCTCTCAGGTaGTATTGTGTTGGCAGGTGCTTTGGCCACACTAGC +
Preference number: 3 (lower is better)
Translates to: RGLLGLLAVPLR*YCVGRCFGHTS
Trigger: GCTAGTGTGGCCAAAGCACCTGCCAACACAATACCACCTGAGAGGAACAGCAAGCAAGCCAAGGAGACCCCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR CCA 72 bp CAGGGCATTGAACTGGCACAATGTTCTTCCTCTTCTTaGGGCTGCTGGGTGGCTAGTGGCTCAGGGCTTCCT +
Preference number: 3 (lower is better)
Translates to: QGIELAQCSSSS*GCWVASGSGLP
Trigger: AGGAAGCCCTGAGCCACTAGCCACCCAGCAGCCCCAAGAAGAGGAAGAACATTGTGCCAGTTCAATGCCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR TCA 72 bp CTTGGTGTCTCTCGTAAGCCATGGTCAGGGATGTTGTaGCCTGGCGCAAATGCAGAGGGTCCAGAAACCGCA +
Preference number: 3 (lower is better)
Translates to: LGVSRKPWSGML*PGANAEGPETA
Trigger: TGCGGTTTCTGGACCCTCTGCATTTGCGCCAGGTCACAACATCCCTGACCATGGCTTACGAGAGACACCAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR TCA 72 bp TGCTTGGCAGAACTGAGCAAGAGAACAGCATACAGCTaGGGCTTCACTGGGCCAGGCGCCTACTACGGTACA +
Preference number: 3 (lower is better)
Translates to: CLAELSKRTAYS*GFTGPGAYYGT
Trigger: TGTACCGTAGTAGGCGCCTGGCCCAGTGAAGCCTCAGCTGTATGCTGTTCTCTTGCTCAGTTCTGCCAAGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR GCA 72 bp CTTGCTGTTCCTCTCAGGTGGTATTGTGTTGGCAGGTaGTTTGGCCACACTAGCAGGCACTCTGGATGGCAC +
Preference number: 3 (lower is better)
Translates to: LAVPLRWYCVGR*FGHTSRHSGWH
Trigger: GTGCCATCCAGAGTGCCTGCTAGTGTGGCCAAAGCACCTGCCAACACAATACCACCTGAGAGGAACAGCAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR-3UTR CAA 90 bp AAGGAGCTGCTAGGGCTAATGGCAAGGTCCACAGAGCAGGCTGAGAATGGCTCGACCCAGTTCTGGTTCTaGCTCTTGATGCTCTCTGGA +
Preference number: 3 (lower is better)
Translates to: KELLGLMARSTEQAENGSTQFWF*LLMLSG
Trigger: TCCAGAGAGCATCAAGAGCAAGAACCAGAACTGGGT...CGAGCCATTCTCAGCCTGCTCTGTGGACCTTGCCATTAGCCCTAGCAGCTCCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR-3UTR CAA 90 bp CCAGTGGACGAGGAGGACAAAGAGGTATCAGCAGATAGGGCTGATACTGTGACCGCTGGAAGGAAACGGTaGGAGACACAGGTCCATAGG +
Preference number: 3 (lower is better)
Translates to: PVDEEDKEVSADRADTVTAGRKR*ETQVHR
Trigger: CCTATGGACCTGTGTCTCCAACCGTTTCCTTCCAGC...GGTCACAGTATCAGCCCTATCTGCTGATACCTCTTTGTCCTCCTCGTCCACTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR TCA 72 bp GGCCAGGGAAAGGGTGGAACTGATGCAAGCCCAGCCTaGGTTCTGCCCACTAGGTATCTCATCATCCAGTAT +
Preference number: 3 (lower is better)
Translates to: GQGKGGTDASPA*VLPTRYLIIQY
Trigger: ATACTGGATGATGAGATACCTAGTGGGCAGAACTCAGGCTGGGCTTGCATCAGTTCCACCCTTTCCCTGGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
ENSMUST00000130597.8
3UTR TCA 72 bp AGCTTTGGCCTGGTCACCAGCTCCCTTTGCAAAAGCTaGTCCAGTGGACGAGGAGGACAAAGAGGTATCAGC +
Preference number: 3 (lower is better)
Translates to: SFGLVTSSLCKS*SSGRGGQRGIS
Trigger: GCTGATACCTCTTTGTCCTCCTCGTCCACTGGATCAGCTTTTGCAAAGGGAGCTGGTGACCAGGCCAAAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR GCA 72 bp AGAAGATCTGGGCGAGATGAGGGGCATTGTCAACAGTaGGATACCTCCTCATCTTCAGGCTTGGGCCAACAG +
Preference number: 3 (lower is better)
Translates to: RRSGRDEGHCQQ*DTSSSSGLGQQ
Trigger: CTGTTGGCCCAAGCCTGAAGATGAGGAGGTATCGCACTGTTGACAATGCCCCTCATCTCGCCCAGATCTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
ENSMUST00000130597.8
3UTR GCA 72 bp ACCAGCACACCTGGCTTGCTCATCTCTGGTCCAGAGTaGAAGCTCCTGATACTGCTATTTGGTCCAGTCTGG +
Preference number: 3 (lower is better)
Translates to: TSTPGLLISGPE*KLLILLFGPVW
Trigger: CCAGACTGGACCAAATAGCAGTATCAGGAGCTTGCACTCTGGACCAGAGATGAGCAAGCCAGGTGTGCTGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR CCA 72 bp GAGTGCAAGCTCCTGATACTGCTATTTGGTCCAGTCTaGTTGCCTCCAGTGGTGACTTTGGTTGCTGGACCC +
Preference number: 3 (lower is better)
Translates to: ECKLLILLFGPV*LPPVVTLVAGP
Trigger: GGGTCCAGCAACCAAAGTCACCACTGGAGGCAACCAGACTGGACCAAATAGCAGTATCAGGAGCTTGCACTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR CCA 72 bp TGGCACAATGTTCTTCCTCTTCTTGGGGCTGCTGGGTaGCTAGTGGCTCAGGGCTTCCTAATAGATCAGCAC +
Preference number: 3 (lower is better)
Translates to: WHNVLPLLGAAG*LVAQGFLIDQH
Trigger: GTGCTGATCTATTAGGAAGCCCTGAGCCACTAGCCACCCAGCAGCCCCAAGAAGAGGAAGAACATTGTGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR TCA 72 bp CGAATACTCATTCTCCTCTGGACCATGGTTGGGTTCTaGGACCAAGGAGCTGCTAGGGCTAATGGCAAGGTC +
Preference number: 3 (lower is better)
Translates to: RILILLWTMVGF*DQGAARANGKV
Trigger: GACCTTGCCATTAGCCCTAGCAGCTCCTTGGTCTCAGAACCCAACCATGGTCCAGAGGAGAATGAGTATTCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR GCA 72 bp TACCTCCTTAGGAGCACAGAGCATGAACTCTTACACTaGCACGTGGGCAGGTCAGGAGCAATGGAGGTAACA +
Preference number: 3 (lower is better)
Translates to: YLLRSTEHELLH*HVGRSGAMEVT
Trigger: TGTTACCTCCATTGCTCCTGACCTGCCCACGTGGCAGTGTAAGAGTTCATGCTCTGTGCTCCTAAGGAGGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
ENSMUST00000130597.8
3UTR CCA 72 bp CCACTAGGTATCTCATCATCCAGTATAGGGAGAGAATaGAGACCAGGAGTGGAGAAGCGAGGAGGGGGTAAG +
Preference number: 3 (lower is better)
Translates to: PLGISSSSIGRE*RPGVEKRGGGK
Trigger: CTTACCCCCTCCTCGCTTCTCCACTCCTGGTCTCCATTCTCTCCCTATACTGGATGATGAGATACCTAGTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
ENSMUST00000130597.8
3UTR CCA 72 bp GTGAGTGTAGTACTGAAACAGGTGGCAGCTTTGGCCTaGTCACCAGCTCCCTTTGCAAAAGCTGATCCAGTG +
Preference number: 3 (lower is better)
Translates to: VSVVLKQVAALA*SPAPFAKADPV
Trigger: CACTGGATCAGCTTTTGCAAAGGGAGCTGGTGACCAGGCCAAAGCTGCCACCTGTTTCAGTACTACACTCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR CCA 72 bp CTCTGGTCCAGAGTGCAAGCTCCTGATACTGCTATTTaGTCCAGTCTGGTTGCCTCCAGTGGTGACTTTGGT +
Preference number: 3 (lower is better)
Translates to: LWSRVQAPDTAI*SSLVASSGDFG
Trigger: ACCAAAGTCACCACTGGAGGCAACCAGACTGGACCAAATAGCAGTATCAGGAGCTTGCACTCTGGACCAGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR-3UTR CAA 90 bp CAGGGAGGAGAAAGAAGCATGATGGAGATGAAGGCTGCTCTCTCAAAGACTGCCCCTCAGGCCTGGCAGTaGCTTCTGGCTTTCTTAAGA +
Preference number: 3 (lower is better)
Translates to: QGGERSMMEMKAALSKTAPQAWQ*LLAFLR
Trigger: TCTTAAGAAAGCCAGAAGCAACTGCCAGGCCTGAGG...GGCAGTCTTTGAGAGAGCAGCCTTCATCTCCATCATGCTTCTTTCTCCTCCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
ENSMUST00000130597.8
3UTR-3UTR CAA 90 bp CCCACTAGGTATCTCATCATCCAGTATAGGGAGAGAATGGAGACCAGGAGTGGACCTCAGGCCTGGCAGTaGCTTCTGGCTTTCTTAAGA +
Preference number: 3 (lower is better)
Translates to: PTRYLIIQYRERMETRSGPQAWQ*LLAFLR
Trigger: TCTTAAGAAAGCCAGAAGCAACTGCCAGGCCTGAGG...TCCACTCCTGGTCTCCATTCTCTCCCTATACTGGATGATGAGATACCTAGTGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
ENSMUST00000130597.8
3UTR GCA 72 bp GAAAGGGTGGAACTGATGCAAGCCCAGCCTGAGTTCTaGCCACTAGGTATCTCATCATCCAGTATAGGGAGA +
Preference number: 3 (lower is better)
Translates to: ERVELMQAQPEF*PLGISSSSIGR
Trigger: TCTCCCTATACTGGATGATGAGATACCTAGTGGGCAGAACTCAGGCTGGGCTTGCATCAGTTCCACCCTTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
ENSMUST00000130597.8
3UTR GCA 72 bp TGCTCTCTCAAAGACTGCCATTACCAATATGCACTCTaGCTCTCACACTCTCACCTTAGCTCAGCCAGCCAG +
Preference number: 3 (lower is better)
Translates to: CSLKDCHYQYAL*LSHSHLSSASQ
Trigger: CTGGCTGGCTGAGCTAAGGTGAGAGTGTGAGAGGCAGAGTGCATATTGGTAATGGCAGTCTTTGAGAGAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
ENSMUST00000130597.8
3UTR GCA 72 bp ATTGAACTGGCACAATGTTCTTCCTCTTCTTGGGGCTaGTGGGTGGCTAGTGGCTCAGGGCTTCCTAATAGA +
Preference number: 3 (lower is better)
Translates to: IELAQCSSSSWG*WVASGSGLPNR
Trigger: TCTATTAGGAAGCCCTGAGCCACTAGCCACCCAGCAGCCCCAAGAAGAGGAAGAACATTGTGCCAGTTCAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR-3UTR CAA 90 bp AGCATGATGGAGATGAAGGCTGCTCTCTCAAAGACTGCCATTACCAATATGCACCCCGCATACACTGAGTaGCTGGGTAATTTTGATGGC +
Preference number: 3 (lower is better)
Translates to: SMMEMKAALSKTAITNMHPAYTE*LGNFDG
Trigger: GCCATCAAAATTACCCAGCAACTCAGTGTATGCGGG...GTGCATATTGGTAATGGCAGTCTTTGAGAGAGCAGCCTTCATCTCCATCATGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR GCA 72 bp AAGCATGATGGAGATGAAGGCTGCTCTCTCAAAGACTaGCATTACCAATATGCACTCTGCCTCTCACACTCT +
Preference number: 3 (lower is better)
Translates to: KHDGDEGCSLKD*HYQYALCLSHS
Trigger: AGAGTGTGAGAGGCAGAGTGCATATTGGTAATGGCAGTCTTTGAGAGAGCAGCCTTCATCTCCATCATGCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
ENSMUST00000130597.8
3UTR TCA 72 bp GTAACACAGTGCCTCCAAAAGCTGAAGACCAGAAGATaGCATATGAACCAGGATAAAACAATGTCTCTCCCC +
Preference number: 3 (lower is better)
Translates to: VTQCLQKLKTRR*HMNQDKTMSLP
Trigger: GGGGAGAGACATTGTTTTATCCTGGTTCATATGTCATCTTCTGGTCTTCAGCTTTTGGAGGCACTGTGTTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
ENSMUST00000130597.8
3UTR-3UTR CAA 90 bp TTCGTCTACCTGGATTCTAAAGGACGAATACTCATTCTCCTCTGGACCATGGTTCTGGTAGTCACAGAATaGGTGAGTGTAGTACTGAAA +
Preference number: 3 (lower is better)
Translates to: FVYLDSKGRILILLWTMVLVVTE*VSVVLK
Trigger: TTTCAGTACTACACTCACCAATTCTGTGACTACCAG...AACCATGGTCCAGAGGAGAATGAGTATTCGTCCTTTAGAATCCAGGTAGACGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR TCA 72 bp TTAGCATCAATGTATGCATACTTTCCATCTCACAGGTaGGAATATATTAGCATGTATGTGTGGGTGTGGGCG +
Preference number: 3 (lower is better)
Translates to: LASMYAYFPSHR*EYISMYVWVWA
Trigger: CGCCCACACCCACACATACATGCTAATATATTCTCACCTGTGAGATGGAAAGTATGCATACATTGATGCTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
ENSMUST00000130597.8
CDS-3UTR TCA 90 bp GACTGGCTGTGGAGAGGGCCCAAAGGGGCAGAGCACTCAAAGCTCCCTAGAGACTCTGCAGTGCCCGGATaGAGACCTCCACCCAGCCAG +
Preference number: 4 (lower is better)
Translates to: DWLWRGPKGAEHSKLPRDSAVPG*RPPPSQ
Trigger: CTGGCTGGGTGGAGGTCTTCATCCGGGCACTGCAGA...GTCTCTAGGGAGCTTTGAGTGCTCTGCCCCTTTGGGCCCTCTCCACAGCCAGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
3UTR CAA 72 bp TGCTGCGTGGGCGCCACCCAGTTCTGGTTCTTGCTCTaGATGCTCTCTGGAGGGCTGAGGGCTGAGAGCCTG +
Preference number: 4 (lower is better)
Translates to: CCVGATQFWFLL*MLSGGLRAESL
Trigger: CAGGCTCTCAGCCCTCAGCCCTCCAGAGAGCATCAAGAGCAAGAACCAGAACTGGGTGGCGCCCACGCAGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
CDS-3UTR CCA 90 bp GACTGGCTGTGGAGAGGGCCCAAAGGGGCAGAGCACTCAAAGCTCCCTAGAGACTACTGGGGACTCTGGTaGCTGGGTGTCCTGGACAGG +
Preference number: 4 (lower is better)
Translates to: DWLWRGPKGAEHSKLPRDYWGLW*LGVLDR
Trigger: CCTGTCCAGGACACCCAGCCACCAGAGTCCCCAGTA...GTCTCTAGGGAGCTTTGAGTGCTCTGCCCCTTTGGGCCCTCTCCACAGCCAGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CCA 90 bp GGCTCTCCTGCCAAGGCCTTAGACCAGGCTGCCGGTGGAAGGCATAAGATGCTATACTGGGGACTCTGGTaGCTGGGTGTCCTGGACAGG +
Preference number: 4 (lower is better)
Translates to: GSPAKALDQAAGGRHKMLYWGLW*LGVLDR
Trigger: CCTGTCCAGGACACCCAGCCACCAGAGTCCCCAGTA...TAGCATCTTATGCCTTCCACCGGCAGCCTGGTCTAAGGCCTTGGCAGGAGAGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR TCA 90 bp CTTCAGGCTTGGGCCAACAGGGATAAAGCTGGTGGAGATACCTCCTTAGGAGCAGCCAGCACGCTCTCCTaGCTGCCCAGCCCTGTGCTT +
Preference number: 4 (lower is better)
Translates to: LQAWANRDKAGGDTSLGAASTLS*LPSPVL
Trigger: AAGCACAGGGCTGGGCAGTCAGGAGAGCGTGCTGGC...TGCTCCTAAGGAGGTATCTCCACCAGCTTTATCCCTGTTGGCCCAAGCCTGAAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
CDS-3UTR CCA 90 bp CACTGCCACGTGGGCAGGTCAGGAGCAATGGAGGTAACACAGTGCCTCCAAAAGGGTGGCTGGGTGTCCTaGACAGGCTTGGGGCAACTT +
Preference number: 4 (lower is better)
Translates to: HCHVGRSGAMEVTQCLQKGGWVS*TGLGQL
Trigger: AAGTTGCCCCAAGCCTGTCCAGGACACCCAGCCACC...CTTTTGGAGGCACTGTGTTACCTCCATTGCTCCTGACCTGCCCACGTGGCAGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CCA 90 bp GGCTCTCCTGCCAAGGCCTTAGACCAGGCTGCCGGTGGAAGGCATAAGATGCTAAACAGGTGGCAGCTTTaGCCTGGTCACCAGCTCCCT +
Preference number: 4 (lower is better)
Translates to: GSPAKALDQAAGGRHKMLNRWQL*PGHQLP
Trigger: AGGGAGCTGGTGACCAGGCCAAAGCTGCCACCTGTT...TAGCATCTTATGCCTTCCACCGGCAGCCTGGTCTAAGGCCTTGGCAGGAGAGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CCA 90 bp GGCTCTCCTGCCAAGGCCTTAGACCAGGCTGCCGGTGGAAGGCATAAGATGCTACCTCCGGGGTCTCCTTaGCTTGCTTGCTGTTCCTCT +
Preference number: 4 (lower is better)
Translates to: GSPAKALDQAAGGRHKMLPPGSP*LACCSS
Trigger: AGAGGAACAGCAAGCAAGCCAAGGAGACCCCGGAGG...TAGCATCTTATGCCTTCCACCGGCAGCCTGGTCTAAGGCCTTGGCAGGAGAGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR TCA 90 bp GGCTCTCCTGCCAAGGCCTTAGACCAGGCTGCCGGTGGAAGGCATAAGATGCTACGCAGCAGTGGACTTTaGACTGAGGGGCAACTTGGA +
Preference number: 4 (lower is better)
Translates to: GSPAKALDQAAGGRHKMLRSSGL*TEGQLG
Trigger: TCCAAGTTGCCCCTCAGTTCAAAGTCCACTGCTGCG...TAGCATCTTATGCCTTCCACCGGCAGCCTGGTCTAAGGCCTTGGCAGGAGAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CCA 90 bp GGCTCTCCTGCCAAGGCCTTAGACCAGGCTGCCGGTGGAAGGCATAAGATGCTAAGGGATGTTGTGACCTaGCGCAAATGCAGAGGGTCC +
Preference number: 4 (lower is better)
Translates to: GSPAKALDQAAGGRHKMLRDVVT*RKCRGS
Trigger: GGACCCTCTGCATTTGCGCCAGGTCACAACATCCCT...TAGCATCTTATGCCTTCCACCGGCAGCCTGGTCTAAGGCCTTGGCAGGAGAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CCA 90 bp TCCTCAGGCCTGGCAGTTGCTTCTGGCTTTCTTAAGAGTCCACAGAGAACCTCCGGGGACTCTGGTGGCTaGGTGTCCTGGACAGGCTTG +
Preference number: 4 (lower is better)
Translates to: SSGLAVASGFLKSPQRTSGDSGG*VSWTGL
Trigger: CAAGCCTGTCCAGGACACCCAGCCACCAGAGTCCCC...GGAGGTTCTCTGTGGACTCTTAAGAAAGCCAGAAGCAACTGCCAGGCCTGAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CCA 90 bp GAGATGAGGGGCATTGTCAACAGTGCGATACCTCCTCATCTTCAGGCTTGGGCCTCTTCTTGGGGCTGCTaGGTGGCTAGTGGCTCAGGG +
Preference number: 4 (lower is better)
Translates to: EMRGIVNSAIPPHLQAWASSWGC*VASGSG
Trigger: CCCTGAGCCACTAGCCACCCAGCAGCCCCAAGAAGA...GGCCCAAGCCTGAAGATGAGGAGGTATCGCACTGTTGACAATGCCCCTCATCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
3UTR CAA 72 bp CCCCGGAGGCAGGTAGCTCTGATAAACTCGAGTCACTaGATCAGCCAGCCCAGGCAGCTCACAGATCTGCAG +
Preference number: 4 (lower is better)
Translates to: PRRQVALINSSH*ISQPRQLTDLQ
Trigger: CTGCAGATCTGTGAGCTGCCTGGGCTGGCTGATCAAGTGACTCGAGTTTATCAGAGCTACCTGCCTCCGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR CAA 72 bp CTATTTGGTCCAGTCTGGTTGCCTCCAGTGGTGACTTaGGTTGCTGGACCCTCCGGGGTCTCCTTGGCTTGC +
Preference number: 4 (lower is better)
Translates to: LFGPVWLPPVVT*VAGPSGVSLAC
Trigger: GCAAGCCAAGGAGACCCCGGAGGGTCCAGCAACCAAAGTCACCACTGGAGGCAACCAGACTGGACCAAATAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
CDS-3UTR TCA 90 bp GAGATGAGGGGCATTGTCAACAGTGCGATACCTCCTCATCTTCAGGCTTGGGCCGTCCACAGAGCAGGCTaGGAATGGCTCGTCCAACTG +
Preference number: 4 (lower is better)
Translates to: EMRGIVNSAIPPHLQAWAVHRAG*EWLVQL
Trigger: CAGTTGGACGAGCCATTCTCAGCCTGCTCTGTGGAC...GGCCCAAGCCTGAAGATGAGGAGGTATCGCACTGTTGACAATGCCCCTCATCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CCA 90 bp CACTGCCACGTGGGCAGGTCAGGAGCAATGGAGGTAACACAGTGCCTCCAAAAGGGCGCCACCCAGTTCTaGTTCTTGCTCTTGATGCTC +
Preference number: 4 (lower is better)
Translates to: HCHVGRSGAMEVTQCLQKGATQF*FLLLML
Trigger: GAGCATCAAGAGCAAGAACCAGAACTGGGTGGCGCC...CTTTTGGAGGCACTGTGTTACCTCCATTGCTCCTGACCTGCCCACGTGGCAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
3UTR CAA 72 bp TTGGTTGCTGGACCCTCCGGGGTCTCCTTGGCTTGCTaGCTGTTCCTCTCAGGTGGTATTGTGTTGGCAGGT +
Preference number: 4 (lower is better)
Translates to: LVAGPSGVSLAC*LFLSGGIVLAG
Trigger: ACCTGCCAACACAATACCACCTGAGAGGAACAGCAAGCAAGCCAAGGAGACCCCGGAGGGTCCAGCAACCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR CAA 72 bp GACTTTGGTTGCTGGACCCTCCGGGGTCTCCTTGGCTaGCTTGCTGTTCCTCTCAGGTGGTATTGTGTTGGC +
Preference number: 4 (lower is better)
Translates to: DFGCWTLRGLLG*LAVPLRWYCVG
Trigger: GCCAACACAATACCACCTGAGAGGAACAGCAAGCAAGCCAAGGAGACCCCGGAGGGTCCAGCAACCAAAGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR CAA 72 bp GTGGTGACTTTGGTTGCTGGACCCTCCGGGGTCTCCTaGGCTTGCTTGCTGTTCCTCTCAGGTGGTATTGTG +
Preference number: 4 (lower is better)
Translates to: VVTLVAGPSGVS*ACLLFLSGGIV
Trigger: CACAATACCACCTGAGAGGAACAGCAAGCAAGCCAAGGAGACCCCGGAGGGTCCAGCAACCAAAGTCACCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
CDS-3UTR TCA 90 bp AGATACCTCCTTAGGAGCACAGAGCATGAACTCTTACACTGCCACGTGGGCAGGGGTTGCCTCCAGTGGTaGCTTTGGTTGCTGGACCCT +
Preference number: 4 (lower is better)
Translates to: RYLLRSTEHELLHCHVGRGCLQW*LWLLDP
Trigger: AGGGTCCAGCAACCAAAGTCACCACTGGAGGCAACC...CCTGCCCACGTGGCAGTGTAAGAGTTCATGCTCTGTGCTCCTAAGGAGGTATCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CCA 90 bp AGATACCTCCTTAGGAGCACAGAGCATGAACTCTTACACTGCCACGTGGGCAGGCCTCAGGGCAGTACGTaGAAGGGGCTGGAAGGAAAC +
Preference number: 4 (lower is better)
Translates to: RYLLRSTEHELLHCHVGRPQGST*KGLEGN
Trigger: GTTTCCTTCCAGCCCCTTCCACGTACTGCCCTGAGG...CCTGCCCACGTGGCAGTGTAAGAGTTCATGCTCTGTGCTCCTAAGGAGGTATCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CCA 90 bp CAGGGAGGAGAAAGAAGCATGATGGAGATGAAGGCTGCTCTCTCAAAGACTGCCTCTTCTTGGGGCTGCTaGGTGGCTAGTGGCTCAGGG +
Preference number: 4 (lower is better)
Translates to: QGGERSMMEMKAALSKTASSWGC*VASGSG
Trigger: CCCTGAGCCACTAGCCACCCAGCAGCCCCAAGAAGA...GGCAGTCTTTGAGAGAGCAGCCTTCATCTCCATCATGCTTCTTTCTCCTCCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
3UTR CAA 72 bp CTGTTCCTCTCAGGTGGTATTGTGTTGGCAGGTGCTTaGGCCACACTAGCAGGCACTCTGGATGGCACTGTG +
Preference number: 4 (lower is better)
Translates to: LFLSGGIVLAGA*ATLAGTLDGTV
Trigger: CACAGTGCCATCCAGAGTGCCTGCTAGTGTGGCCAAAGCACCTGCCAACACAATACCACCTGAGAGGAACAG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
CDS-3UTR TCA 90 bp ATACCTCCTCATCTTCAGGCTTGGGCCAACAGGGATAAAGCTGGTGGAGATACCGTCCACAGAGCAGGCTaGGAATGGCTCGTCCAACTG +
Preference number: 4 (lower is better)
Translates to: IPPHLQAWANRDKAGGDTVHRAG*EWLVQL
Trigger: CAGTTGGACGAGCCATTCTCAGCCTGCTCTGTGGAC...GGTATCTCCACCAGCTTTATCCCTGTTGGCCCAAGCCTGAAGATGAGGAGGTAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR TCA 90 bp TCCTCAGGCCTGGCAGTTGCTTCTGGCTTTCTTAAGAGTCCACAGAGAACCTCCACCATGGTTGGGTTCTaGGACCAAGGAGCTGCTAGG +
Preference number: 4 (lower is better)
Translates to: SSGLAVASGFLKSPQRTSTMVGF*DQGAAR
Trigger: CCTAGCAGCTCCTTGGTCTCAGAACCCAACCATGGT...GGAGGTTCTCTGTGGACTCTTAAGAAAGCCAGAAGCAACTGCCAGGCCTGAGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CCA 90 bp TCCTCAGGCCTGGCAGTTGCTTCTGGCTTTCTTAAGAGTCCACAGAGAACCTCCTGTCCTGGACAGGCTTaGGGCAACTTGGTGTCTCTC +
Preference number: 4 (lower is better)
Translates to: SSGLAVASGFLKSPQRTSCPGQA*GNLVSL
Trigger: GAGAGACACCAAGTTGCCCCAAGCCTGTCCAGGACA...GGAGGTTCTCTGTGGACTCTTAAGAAAGCCAGAAGCAACTGCCAGGCCTGAGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CCA 90 bp AATATATTAGCATGTATGTGTGGGTGTGGGCGTGGGTCTGTGGGTATGTGTGTGGGGGACTCTGGTGGCTaGGTGTCCTGGACAGGCTTG +
Preference number: 4 (lower is better)
Translates to: NILACMCGCGRGSVGMCVGDSGG*VSWTGL
Trigger: CAAGCCTGTCCAGGACACCCAGCCACCAGAGTCCCC...CACACACATACCCACAGACCCACGCCCACACCCACACATACATGCTAATATATT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CCA 90 bp CTTCAGGCTTGGGCCAACAGGGATAAAGCTGGTGGAGATACCTCCTTAGGAGCAGGCGCCACCCAGTTCTaGTTCTTGCTCTTGATGCTC +
Preference number: 4 (lower is better)
Translates to: LQAWANRDKAGGDTSLGAGATQF*FLLLML
Trigger: GAGCATCAAGAGCAAGAACCAGAACTGGGTGGCGCC...TGCTCCTAAGGAGGTATCTCCACCAGCTTTATCCCTGTTGGCCCAAGCCTGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CCA 90 bp GCATTGTCAACAGTGCGATACCTCCTCATCTTCAGGCTTGGGCCAACAGGGATAGCAACATTTGCTGCGTaGGCGCCACCCAGTTCTGGT +
Preference number: 4 (lower is better)
Translates to: ALSTVRYLLIFRLGPTGIATFAA*APPSSG
Trigger: ACCAGAACTGGGTGGCGCCCACGCAGCAAATGTTGC...TATCCCTGTTGGCCCAAGCCTGAAGATGAGGAGGTATCGCACTGTTGACAATGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CCA 90 bp GCATTGTCAACAGTGCGATACCTCCTCATCTTCAGGCTTGGGCCAACAGGGATACCTCAGGGCAGTACGTaGAAGGGGCTGGAAGGAAAC +
Preference number: 4 (lower is better)
Translates to: ALSTVRYLLIFRLGPTGIPQGST*KGLEGN
Trigger: GTTTCCTTCCAGCCCCTTCCACGTACTGCCCTGAGG...TATCCCTGTTGGCCCAAGCCTGAAGATGAGGAGGTATCGCACTGTTGACAATGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CCA 90 bp CTTCAGGCTTGGGCCAACAGGGATAAAGCTGGTGGAGATACCTCCTTAGGAGCAGGATACCAGCACACCTaGCTTGCTCATCTCTGGTCC +
Preference number: 4 (lower is better)
Translates to: LQAWANRDKAGGDTSLGAGYQHT*LAHLWS
Trigger: GGACCAGAGATGAGCAAGCCAGGTGTGCTGGTATCC...TGCTCCTAAGGAGGTATCTCCACCAGCTTTATCCCTGTTGGCCCAAGCCTGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
3UTR CAA 72 bp GCTGGAAGGAAACGGTTGGAGACACAGGTCCATAGGTaGCTATGGGAACAGAGGCAACATTTGCTGCGTGGG +
Preference number: 4 (lower is better)
Translates to: AGRKRLETQVHR*LWEQRQHLLRG
Trigger: CCCACGCAGCAAATGTTGCCTCTGTTCCCATAGCAACCTATGGACCTGTGTCTCCAACCGTTTCCTTCCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR CAA 72 bp TGCAAGCTCCTGATACTGCTATTTGGTCCAGTCTGGTaGCCTCCAGTGGTGACTTTGGTTGCTGGACCCTCC +
Preference number: 4 (lower is better)
Translates to: CKLLILLFGPVW*PPVVTLVAGPS
Trigger: GGAGGGTCCAGCAACCAAAGTCACCACTGGAGGCAACCAGACTGGACCAAATAGCAGTATCAGGAGCTTGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
3UTR CAA 72 bp AATGGCTCGTCCAACTGGGATACCAGCACACCTGGCTaGCTCATCTCTGGTCCAGAGTGCAAGCTCCTGATA +
Preference number: 4 (lower is better)
Translates to: NGSSNWDTSTPG*LISGPECKLLI
Trigger: TATCAGGAGCTTGCACTCTGGACCAGAGATGAGCAAGCCAGGTGTGCTGGTATCCCAGTTGGACGAGCCATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
CDS-3UTR TCA 90 bp AGCATGATGGAGATGAAGGCTGCTCTCTCAAAGACTGCCATTACCAATATGCACTCTGCAGTGCCCGGATaGAGACCTCCACCCAGCCAG +
Preference number: 4 (lower is better)
Translates to: SMMEMKAALSKTAITNMHSAVPG*RPPPSQ
Trigger: CTGGCTGGGTGGAGGTCTTCATCCGGGCACTGCAGA...GTGCATATTGGTAATGGCAGTCTTTGAGAGAGCAGCCTTCATCTCCATCATGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR TCA 90 bp CAGGGAGGAGAAAGAAGCATGATGGAGATGAAGGCTGCTCTCTCAAAGACTGCCTGGTCAGGGATGTTGTaGCCTGGCGCAAATGCAGAG +
Preference number: 4 (lower is better)
Translates to: QGGERSMMEMKAALSKTAWSGML*PGANAE
Trigger: CTCTGCATTTGCGCCAGGTCACAACATCCCTGACCA...GGCAGTCTTTGAGAGAGCAGCCTTCATCTCCATCATGCTTCTTTCTCCTCCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CCA 90 bp ATACCTCCTCATCTTCAGGCTTGGGCCAACAGGGATAAAGCTGGTGGAGATACCTGTCCTGGACAGGCTTaGGGCAACTTGGTGTCTCTC +
Preference number: 4 (lower is better)
Translates to: IPPHLQAWANRDKAGGDTCPGQA*GNLVSL
Trigger: GAGAGACACCAAGTTGCCCCAAGCCTGTCCAGGACA...GGTATCTCCACCAGCTTTATCCCTGTTGGCCCAAGCCTGAAGATGAGGAGGTAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CCA 90 bp AATATATTAGCATGTATGTGTGGGTGTGGGCGTGGGTCTGTGGGTATGTGTGTGCTCTACTGGGGACTCTaGTGGCTGGGTGTCCTGGAC +
Preference number: 4 (lower is better)
Translates to: NILACMCGCGRGSVGMCVLYWGL*WLGVLD
Trigger: GTCCAGGACACCCAGCCACCAGAGTCCCCAGTAGAG...CACACACATACCCACAGACCCACGCCCACACCCACACATACATGCTAATATATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CCA 90 bp GCAAGTATCTGTATCCTTCAAACTCAGAGGAGCCCAGTAAAAGGAAGAGCTGCCCTCTACTGGGGACTCTaGTGGCTGGGTGTCCTGGAC +
Preference number: 4 (lower is better)
Translates to: ASICILQTQRSPVKGRAALYWGL*WLGVLD
Trigger: GTCCAGGACACCCAGCCACCAGAGTCCCCAGTAGAG...GGCAGCTCTTCCTTTTACTGGGCTCCTCTGAGTTTGAAGGATACAGATACTTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CCA 90 bp GCATTGTCAACAGTGCGATACCTCCTCATCTTCAGGCTTGGGCCAACAGGGATAGCCCCGGAGTTGGTCTaGAGGAGTTGCTCTGAATTC +
Preference number: 4 (lower is better)
Translates to: ALSTVRYLLIFRLGPTGIAPELV*RSCSEF
Trigger: GAATTCAGAGCAACTCCTCCAGACCAACTCCGGGGC...TATCCCTGTTGGCCCAAGCCTGAAGATGAGGAGGTATCGCACTGTTGACAATGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CCA 90 bp TCTACTAGCCCAAGCCTAGAGAACATGCTTGGCAGAACTGAGCAAGAGAACAGCGTGGCAGCTTTGGCCTaGTCACCAGCTCCCTTTGCA +
Preference number: 4 (lower is better)
Translates to: STSPSLENMLGRTEQENSVAALA*SPAPFA
Trigger: TGCAAAGGGAGCTGGTGACCAGGCCAAAGCTGCCAC...GCTGTTCTCTTGCTCAGTTCTGCCAAGCATGTTCTCTAGGCTTGGGCTAGTAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CCA 90 bp AGATACCTCCTTAGGAGCACAGAGCATGAACTCTTACACTGCCACGTGGGCAGGCAGGTGGTATTGTGTTaGCAGGTGCTTTGGCCACAC +
Preference number: 4 (lower is better)
Translates to: RYLLRSTEHELLHCHVGRQVVLC*QVLWPH
Trigger: GTGTGGCCAAAGCACCTGCCAACACAATACCACCTG...CCTGCCCACGTGGCAGTGTAAGAGTTCATGCTCTGTGCTCCTAAGGAGGTATCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CCA 90 bp TCCTCAGGCCTGGCAGTTGCTTCTGGCTTTCTTAAGAGTCCACAGAGAACCTCCGCTGTTCCTCTCAGGTaGTATTGTGTTGGCAGGTGC +
Preference number: 4 (lower is better)
Translates to: SSGLAVASGFLKSPQRTSAVPLR*YCVGRC
Trigger: GCACCTGCCAACACAATACCACCTGAGAGGAACAGC...GGAGGTTCTCTGTGGACTCTTAAGAAAGCCAGAAGCAACTGCCAGGCCTGAGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR TCA 90 bp CCCACTAGGTATCTCATCATCCAGTATAGGGAGAGAATGGAGACCAGGAGTGGATGGTCAGGGATGTTGTaGCCTGGCGCAAATGCAGAG +
Preference number: 4 (lower is better)
Translates to: PTRYLIIQYRERMETRSGWSGML*PGANAE
Trigger: CTCTGCATTTGCGCCAGGTCACAACATCCCTGACCA...TCCACTCCTGGTCTCCATTCTCTCCCTATACTGGATGATGAGATACCTAGTGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR TCA 90 bp CTTCAGGCTTGGGCCAACAGGGATAAAGCTGGTGGAGATACCTCCTTAGGAGCAATAGGGCTGATACTGTaGCCCCAGACAAGAGGTTTG +
Preference number: 4 (lower is better)
Translates to: LQAWANRDKAGGDTSLGAIGLIL*PQTRGL
Trigger: CAAACCTCTTGTCTGGGGTCACAGTATCAGCCCTAT...TGCTCCTAAGGAGGTATCTCCACCAGCTTTATCCCTGTTGGCCCAAGCCTGAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR TCA 90 bp GCATTGTCAACAGTGCGATACCTCCTCATCTTCAGGCTTGGGCCAACAGGGATATCCCTTTGCAAAAGCTaGTCCAGTGGACGAGGAGGA +
Preference number: 4 (lower is better)
Translates to: ALSTVRYLLIFRLGPTGISLCKS*SSGRGG
Trigger: TCCTCCTCGTCCACTGGATCAGCTTTTGCAAAGGGA...TATCCCTGTTGGCCCAAGCCTGAAGATGAGGAGGTATCGCACTGTTGACAATGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR TCA 90 bp GATGGAGATGAAGGCTGCTCTCTCAAAGACTGCCATTACCAATATGCACTCTGCGGTTGCCTCCAGTGGTaGCTTTGGTTGCTGGACCCT +
Preference number: 4 (lower is better)
Translates to: DGDEGCSLKDCHYQYALCGCLQW*LWLLDP
Trigger: AGGGTCCAGCAACCAAAGTCACCACTGGAGGCAACC...GCAGAGTGCATATTGGTAATGGCAGTCTTTGAGAGAGCAGCCTTCATCTCCATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR GCA 90 bp AGATACCTCCTTAGGAGCACAGAGCATGAACTCTTACACTGCCACGTGGGCAGGTCTCCTTGGCTTGCTTaGTGTTCCTCTCAGGTGGTA +
Preference number: 4 (lower is better)
Translates to: RYLLRSTEHELLHCHVGRSPWLA*CSSQVV
Trigger: TACCACCTGAGAGGAACAGCAAGCAAGCCAAGGAGA...CCTGCCCACGTGGCAGTGTAAGAGTTCATGCTCTGTGCTCCTAAGGAGGTATCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CCA 90 bp CCCACTAGGTATCTCATCATCCAGTATAGGGAGAGAATGGAGACCAGGAGTGGAAGGGATGTTGTGACCTaGCGCAAATGCAGAGGGTCC +
Preference number: 4 (lower is better)
Translates to: PTRYLIIQYRERMETRSGRDVVT*RKCRGS
Trigger: GGACCCTCTGCATTTGCGCCAGGTCACAACATCCCT...TCCACTCCTGGTCTCCATTCTCTCCCTATACTGGATGATGAGATACCTAGTGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CCA 90 bp AATATATTAGCATGTATGTGTGGGTGTGGGCGTGGGTCTGTGGGTATGTGTGTGGCAACATTTGCTGCGTaGGCGCCACCCAGTTCTGGT +
Preference number: 4 (lower is better)
Translates to: NILACMCGCGRGSVGMCVATFAA*APPSSG
Trigger: ACCAGAACTGGGTGGCGCCCACGCAGCAAATGTTGC...CACACACATACCCACAGACCCACGCCCACACCCACACATACATGCTAATATATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CCA 90 bp AATATATTAGCATGTATGTGTGGGTGTGGGCGTGGGTCTGTGGGTATGTGTGTGAACAGGTGGCAGCTTTaGCCTGGTCACCAGCTCCCT +
Preference number: 4 (lower is better)
Translates to: NILACMCGCGRGSVGMCVNRWQL*PGHQLP
Trigger: AGGGAGCTGGTGACCAGGCCAAAGCTGCCACCTGTT...CACACACATACCCACAGACCCACGCCCACACCCACACATACATGCTAATATATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CCA 90 bp GCATTGTCAACAGTGCGATACCTCCTCATCTTCAGGCTTGGGCCAACAGGGATACAGGTGGTATTGTGTTaGCAGGTGCTTTGGCCACAC +
Preference number: 4 (lower is better)
Translates to: ALSTVRYLLIFRLGPTGIQVVLC*QVLWPH
Trigger: GTGTGGCCAAAGCACCTGCCAACACAATACCACCTG...TATCCCTGTTGGCCCAAGCCTGAAGATGAGGAGGTATCGCACTGTTGACAATGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CCA 90 bp CAGGGAGGAGAAAGAAGCATGATGGAGATGAAGGCTGCTCTCTCAAAGACTGCCTGTTCTTCCTCTTCTTaGGGCTGCTGGGTGGCTAGT +
Preference number: 4 (lower is better)
Translates to: QGGERSMMEMKAALSKTACSSSS*GCWVAS
Trigger: ACTAGCCACCCAGCAGCCCCAAGAAGAGGAAGAACA...GGCAGTCTTTGAGAGAGCAGCCTTCATCTCCATCATGCTTCTTTCTCCTCCCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CCA 90 bp GCATTGTCAACAGTGCGATACCTCCTCATCTTCAGGCTTGGGCCAACAGGGATATGTTCTTCCTCTTCTTaGGGCTGCTGGGTGGCTAGT +
Preference number: 4 (lower is better)
Translates to: ALSTVRYLLIFRLGPTGICSSSS*GCWVAS
Trigger: ACTAGCCACCCAGCAGCCCCAAGAAGAGGAAGAACA...TATCCCTGTTGGCCCAAGCCTGAAGATGAGGAGGTATCGCACTGTTGACAATGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CCA 90 bp GAGATGAGGGGCATTGTCAACAGTGCGATACCTCCTCATCTTCAGGCTTGGGCCCCCAGGGCATTGAACTaGCACAATGTTCTTCCTCTT +
Preference number: 4 (lower is better)
Translates to: EMRGIVNSAIPPHLQAWAPRALN*HNVLPL
Trigger: AAGAGGAAGAACATTGTGCCAGTTCAATGCCCTGGG...GGCCCAAGCCTGAAGATGAGGAGGTATCGCACTGTTGACAATGCCCCTCATCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR GCA 90 bp GCAAGTATCTGTATCCTTCAAACTCAGAGGAGCCCAGTAAAAGGAAGAGCTGCCCTCACAGATCTGCAGTaGCCGGATGAAGACCTCCAC +
Preference number: 4 (lower is better)
Translates to: ASICILQTQRSPVKGRAALTDLQ*PDEDLH
Trigger: GTGGAGGTCTTCATCCGGGCACTGCAGATCTGTGAG...GGCAGCTCTTCCTTTTACTGGGCTCCTCTGAGTTTGAAGGATACAGATACTTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR GCA 90 bp TCCTCAGGCCTGGCAGTTGCTTCTGGCTTTCTTAAGAGTCCACAGAGAACCTCCCCGCATACACTGAGTTaGTGGGTAATTTTGATGGCG +
Preference number: 4 (lower is better)
Translates to: SSGLAVASGFLKSPQRTSPHTLS*WVILMA
Trigger: CGCCATCAAAATTACCCAGCAACTCAGTGTATGCGG...GGAGGTTCTCTGTGGACTCTTAAGAAAGCCAGAAGCAACTGCCAGGCCTGAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR GCA 90 bp TCAGCCTCTACTAGCCCAAGCCTAGAGAACATGCTTGGCAGAACTGAGCAAGAGTCTCCTTGGCTTGCTTaGTGTTCCTCTCAGGTGGTA +
Preference number: 4 (lower is better)
Translates to: SASTSPSLENMLGRTEQESPWLA*CSSQVV
Trigger: TACCACCTGAGAGGAACAGCAAGCAAGCCAAGGAGA...CTCTTGCTCAGTTCTGCCAAGCATGTTCTCTAGGCTTGGGCTAGTAGAGGCTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CCA 90 bp GATGGAGATGAAGGCTGCTCTCTCAAAGACTGCCATTACCAATATGCACTCTGCGCCCCGGAGTTGGTCTaGAGGAGTTGCTCTGAATTC +
Preference number: 4 (lower is better)
Translates to: DGDEGCSLKDCHYQYALCAPELV*RSCSEF
Trigger: GAATTCAGAGCAACTCCTCCAGACCAACTCCGGGGC...GCAGAGTGCATATTGGTAATGGCAGTCTTTGAGAGAGCAGCCTTCATCTCCATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CCA 90 bp AGCATGATGGAGATGAAGGCTGCTCTCTCAAAGACTGCCATTACCAATATGCACCCTCCGGGGTCTCCTTaGCTTGCTTGCTGTTCCTCT +
Preference number: 4 (lower is better)
Translates to: SMMEMKAALSKTAITNMHPPGSP*LACCSS
Trigger: AGAGGAACAGCAAGCAAGCCAAGGAGACCCCGGAGG...GTGCATATTGGTAATGGCAGTCTTTGAGAGAGCAGCCTTCATCTCCATCATGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CCA 90 bp CCCACTAGGTATCTCATCATCCAGTATAGGGAGAGAATGGAGACCAGGAGTGGATGGCTTGCTCATCTCTaGTCCAGAGTGCAAGCTCCT +
Preference number: 4 (lower is better)
Translates to: PTRYLIIQYRERMETRSGWLAHL*SRVQAP
Trigger: AGGAGCTTGCACTCTGGACCAGAGATGAGCAAGCCA...TCCACTCCTGGTCTCCATTCTCTCCCTATACTGGATGATGAGATACCTAGTGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CCA 90 bp CTACGCTTGTGTTTCAGAAGATCTGGGCGAGATGAGGGGCATTGTCAACAGTGCTTCTCCTCTGGACCATaGTTGGGTTCTGAGACCAAG +
Preference number: 4 (lower is better)
Translates to: LRLCFRRSGRDEGHCQQCFSSGP*LGSETK
Trigger: CTTGGTCTCAGAACCCAACCATGGTCCAGAGGAGAA...GCACTGTTGACAATGCCCCTCATCTCGCCCAGATCTTCTGAAACACAAGCGTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR TCA 90 bp CTCTCAAAGACTGCCATTACCAATATGCACTCTGCCTCTCACACTCTCACCTTAACCATGGTTGGGTTCTaGGACCAAGGAGCTGCTAGG +
Preference number: 4 (lower is better)
Translates to: LSKTAITNMHSASHTLTLTMVGF*DQGAAR
Trigger: CCTAGCAGCTCCTTGGTCTCAGAACCCAACCATGGT...TAAGGTGAGAGTGTGAGAGGCAGAGTGCATATTGGTAATGGCAGTCTTTGAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR GCA 90 bp AGCATGATGGAGATGAAGGCTGCTCTCTCAAAGACTGCCATTACCAATATGCACCTCACAGATCTGCAGTaGCCGGATGAAGACCTCCAC +
Preference number: 4 (lower is better)
Translates to: SMMEMKAALSKTAITNMHLTDLQ*PDEDLH
Trigger: GTGGAGGTCTTCATCCGGGCACTGCAGATCTGTGAG...GTGCATATTGGTAATGGCAGTCTTTGAGAGAGCAGCCTTCATCTCCATCATGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR GCA 90 bp TCAGCCTCTACTAGCCCAAGCCTAGAGAACATGCTTGGCAGAACTGAGCAAGAGTTGGTCTGGAGGAGTTaGTCTGAATTCTCTACTGGG +
Preference number: 4 (lower is better)
Translates to: SASTSPSLENMLGRTEQELVWRS*SEFSTG
Trigger: CCCAGTAGAGAATTCAGAGCAACTCCTCCAGACCAA...CTCTTGCTCAGTTCTGCCAAGCATGTTCTCTAGGCTTGGGCTAGTAGAGGCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CCA 90 bp TCCTCAGGCCTGGCAGTTGCTTCTGGCTTTCTTAAGAGTCCACAGAGAACCTCCGTCCATAGGTTGCTATaGGAACAGAGGCAACATTTG +
Preference number: 4 (lower is better)
Translates to: SSGLAVASGFLKSPQRTSVHRLL*EQRQHL
Trigger: CAAATGTTGCCTCTGTTCCCATAGCAACCTATGGAC...GGAGGTTCTCTGTGGACTCTTAAGAAAGCCAGAAGCAACTGCCAGGCCTGAGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CCA 90 bp GATGGAGATGAAGGCTGCTCTCTCAAAGACTGCCATTACCAATATGCACTCTGCGCTGTTCCTCTCAGGTaGTATTGTGTTGGCAGGTGC +
Preference number: 4 (lower is better)
Translates to: DGDEGCSLKDCHYQYALCAVPLR*YCVGRC
Trigger: GCACCTGCCAACACAATACCACCTGAGAGGAACAGC...GCAGAGTGCATATTGGTAATGGCAGTCTTTGAGAGAGCAGCCTTCATCTCCATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CCA 90 bp AGCATGATGGAGATGAAGGCTGCTCTCTCAAAGACTGCCATTACCAATATGCACGGATACCAGCACACCTaGCTTGCTCATCTCTGGTCC +
Preference number: 4 (lower is better)
Translates to: SMMEMKAALSKTAITNMHGYQHT*LAHLWS
Trigger: GGACCAGAGATGAGCAAGCCAGGTGTGCTGGTATCC...GTGCATATTGGTAATGGCAGTCTTTGAGAGAGCAGCCTTCATCTCCATCATGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
3UTR CAA 72 bp AAGATGCTATGGGAGCACTCATCAGTGTACCTACGCTaGTGTTTCAGAAGATCTGGGCGAGATGAGGGGCAT +
Preference number: 4 (lower is better)
Translates to: KMLWEHSSVYLR*CFRRSGRDEGH
Trigger: ATGCCCCTCATCTCGCCCAGATCTTCTGAAACACAAGCGTAGGTACACTGATGAGTGCTCCCATAGCATCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
ENSMUST00000130597.8
3UTR CAA 72 bp GAATTGGTGAGTGTAGTACTGAAACAGGTGGCAGCTTaGGCCTGGTCACCAGCTCCCTTTGCAAAAGCTGAT +
Preference number: 4 (lower is better)
Translates to: ELVSVVLKQVAA*AWSPAPFAKAD
Trigger: ATCAGCTTTTGCAAAGGGAGCTGGTGACCAGGCCAAAGCTGCCACCTGTTTCAGTACTACACTCACCAATTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
CDS-3UTR TCA 90 bp CTCTCAAAGACTGCCATTACCAATATGCACTCTGCCTCTCACACTCTCACCTTATCCCTTTGCAAAAGCTaGTCCAGTGGACGAGGAGGA +
Preference number: 4 (lower is better)
Translates to: LSKTAITNMHSASHTLTLSLCKS*SSGRGG
Trigger: TCCTCCTCGTCCACTGGATCAGCTTTTGCAAAGGGA...TAAGGTGAGAGTGTGAGAGGCAGAGTGCATATTGGTAATGGCAGTCTTTGAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR TCA 90 bp GGGCAAGAACTTGTACTCACACCCTCTGAGATAAGTACTAGGCAAGTATCTGTACGCAGCAGTGGACTTTaGACTGAGGGGCAACTTGGA +
Preference number: 4 (lower is better)
Translates to: GQELVLTPSEISTRQVSVRSSGL*TEGQLG
Trigger: TCCAAGTTGCCCCTCAGTTCAAAGTCCACTGCTGCG...TACAGATACTTGCCTAGTACTTATCTCAGAGGGTGTGAGTACAAGTTCTTGCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR GCA 90 bp GATGGAGATGAAGGCTGCTCTCTCAAAGACTGCCATTACCAATATGCACTCTGCACGGTACAGCATCACTaGCAGGAATACAGCCAAGAG +
Preference number: 4 (lower is better)
Translates to: DGDEGCSLKDCHYQYALCTVQHH*QEYSQE
Trigger: CTCTTGGCTGTATTCCTGGCAGTGATGCTGTACCGT...GCAGAGTGCATATTGGTAATGGCAGTCTTTGAGAGAGCAGCCTTCATCTCCATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CCA 90 bp GCAAGTATCTGTATCCTTCAAACTCAGAGGAGCCCAGTAAAAGGAAGAGCTGCCTTCTCCTCTGGACCATaGTTGGGTTCTGAGACCAAG +
Preference number: 4 (lower is better)
Translates to: ASICILQTQRSPVKGRAAFSSGP*LGSETK
Trigger: CTTGGTCTCAGAACCCAACCATGGTCCAGAGGAGAA...GGCAGCTCTTCCTTTTACTGGGCTCCTCTGAGTTTGAAGGATACAGATACTTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CCA 90 bp TCTACTAGCCCAAGCCTAGAGAACATGCTTGGCAGAACTGAGCAAGAGAACAGCCCCAGGGCATTGAACTaGCACAATGTTCTTCCTCTT +
Preference number: 4 (lower is better)
Translates to: STSPSLENMLGRTEQENSPRALN*HNVLPL
Trigger: AAGAGGAAGAACATTGTGCCAGTTCAATGCCCTGGG...GCTGTTCTCTTGCTCAGTTCTGCCAAGCATGTTCTCTAGGCTTGGGCTAGTAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
3UTR CAA 72 bp AATCTGGGAGAAGGCACTGAGCTGGTAGTCACAGAATaGGTGAGTGTAGTACTGAAACAGGTGGCAGCTTTG +
Preference number: 4 (lower is better)
Translates to: NLGEGTELVVTE*VSVVLKQVAAL
Trigger: CAAAGCTGCCACCTGTTTCAGTACTACACTCACCAATTCTGTGACTACCAGCTCAGTGCCTTCTCCCAGATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
CDS-3UTR GCA 90 bp GATGGAGATGAAGGCTGCTCTCTCAAAGACTGCCATTACCAATATGCACTCTGCATCTCTGGTCCAGAGTaGAAGCTCCTGATACTGCTA +
Preference number: 4 (lower is better)
Translates to: DGDEGCSLKDCHYQYALCISGPE*KLLILL
Trigger: TAGCAGTATCAGGAGCTTGCACTCTGGACCAGAGAT...GCAGAGTGCATATTGGTAATGGCAGTCTTTGAGAGAGCAGCCTTCATCTCCATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR GCA 90 bp GGGCAAGAACTTGTACTCACACCCTCTGAGATAAGTACTAGGCAAGTATCTGTAACGGTACAGCATCACTaGCAGGAATACAGCCAAGAG +
Preference number: 4 (lower is better)
Translates to: GQELVLTPSEISTRQVSVTVQHH*QEYSQE
Trigger: CTCTTGGCTGTATTCCTGGCAGTGATGCTGTACCGT...TACAGATACTTGCCTAGTACTTATCTCAGAGGGTGTGAGTACAAGTTCTTGCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR GCA 90 bp GGGCAAGAACTTGTACTCACACCCTCTGAGATAAGTACTAGGCAAGTATCTGTAATCTCTGGTCCAGAGTaGAAGCTCCTGATACTGCTA +
Preference number: 4 (lower is better)
Translates to: GQELVLTPSEISTRQVSVISGPE*KLLILL
Trigger: TAGCAGTATCAGGAGCTTGCACTCTGGACCAGAGAT...TACAGATACTTGCCTAGTACTTATCTCAGAGGGTGTGAGTACAAGTTCTTGCCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CCA 90 bp AATATATTAGCATGTATGTGTGGGTGTGGGCGTGGGTCTGTGGGTATGTGTGTGGCAACTTGGAAGACATaGTTTTTACTGGGACCAATC +
Preference number: 4 (lower is better)
Translates to: NILACMCGCGRGSVGMCVATWKT*FLLGPI
Trigger: GATTGGTCCCAGTAAAAACCATGTCTTCCAAGTTGC...CACACACATACCCACAGACCCACGCCCACACCCACACATACATGCTAATATATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CCA 90 bp AAGACTAGAGAAGCTAGACATCTGCTAAAGGCCAGGGAAAGGGTGGAACTGATGGCAACTTGGAAGACATaGTTTTTACTGGGACCAATC +
Preference number: 4 (lower is better)
Translates to: KTREARHLLKARERVELMATWKT*FLLGPI
Trigger: GATTGGTCCCAGTAAAAACCATGTCTTCCAAGTTGC...CATCAGTTCCACCCTTTCCCTGGCCTTTAGCAGATGTCTAGCTTCTCTAGTCTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CCA 90 bp GGGCAAGAACTTGTACTCACACCCTCTGAGATAAGTACTAGGCAAGTATCTGTAGTCCATAGGTTGCTATaGGAACAGAGGCAACATTTG +
Preference number: 4 (lower is better)
Translates to: GQELVLTPSEISTRQVSVVHRLL*EQRQHL
Trigger: CAAATGTTGCCTCTGTTCCCATAGCAACCTATGGAC...TACAGATACTTGCCTAGTACTTATCTCAGAGGGTGTGAGTACAAGTTCTTGCCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CAA 90 bp GGCTCTCCTGCCAAGGCCTTAGACCAGGCTGCCGGTGGAAGGCATAAGATGCTAAAACAGGTGGCAGCTTaGGCCTGGTCACCAGCTCCC +
Preference number: 5 (lower is better)
Translates to: GSPAKALDQAAGGRHKMLKQVAA*AWSPAP
Trigger: GGGAGCTGGTGACCAGGCCAAAGCTGCCACCTGTTT...TAGCATCTTATGCCTTCCACCGGCAGCCTGGTCTAAGGCCTTGGCAGGAGAGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CAA 90 bp GGCTCTCCTGCCAAGGCCTTAGACCAGGCTGCCGGTGGAAGGCATAAGATGCTAGTGTTGGCAGGTGCTTaGGCCACACTAGCAGGCACT +
Preference number: 5 (lower is better)
Translates to: GSPAKALDQAAGGRHKMLVLAGA*ATLAGT
Trigger: AGTGCCTGCTAGTGTGGCCAAAGCACCTGCCAACAC...TAGCATCTTATGCCTTCCACCGGCAGCCTGGTCTAAGGCCTTGGCAGGAGAGCC
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CAA 90 bp CACTGCCACGTGGGCAGGTCAGGAGCAATGGAGGTAACACAGTGCCTCCAAAAGGTGTCCTGGACAGGCTaGGGGCAACTTGGTGTCTCT +
Preference number: 5 (lower is better)
Translates to: HCHVGRSGAMEVTQCLQKVSWTG*GQLGVS
Trigger: AGAGACACCAAGTTGCCCCAAGCCTGTCCAGGACAC...CTTTTGGAGGCACTGTGTTACCTCCATTGCTCCTGACCTGCCCACGTGGCAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CAA 90 bp GAGATGAGGGGCATTGTCAACAGTGCGATACCTCCTCATCTTCAGGCTTGGGCCAAACAGGTGGCAGCTTaGGCCTGGTCACCAGCTCCC +
Preference number: 5 (lower is better)
Translates to: EMRGIVNSAIPPHLQAWAKQVAA*AWSPAP
Trigger: GGGAGCTGGTGACCAGGCCAAAGCTGCCACCTGTTT...GGCCCAAGCCTGAAGATGAGGAGGTATCGCACTGTTGACAATGCCCCTCATCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CAA 90 bp CACTGCCACGTGGGCAGGTCAGGAGCAATGGAGGTAACACAGTGCCTCCAAAAGGCTGGAAGGAAACGGTaGGAGACACAGGTCCATAGG +
Preference number: 5 (lower is better)
Translates to: HCHVGRSGAMEVTQCLQKAGRKR*ETQVHR
Trigger: CCTATGGACCTGTGTCTCCAACCGTTTCCTTCCAGC...CTTTTGGAGGCACTGTGTTACCTCCATTGCTCCTGACCTGCCCACGTGGCAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CAA 90 bp TCAGCCTCTACTAGCCCAAGCCTAGAGAACATGCTTGGCAGAACTGAGCAAGAGCGGGGTCTCCTTGGCTaGCTTGCTGTTCCTCTCAGG +
Preference number: 5 (lower is better)
Translates to: SASTSPSLENMLGRTEQERGLLG*LAVPLR
Trigger: CCTGAGAGGAACAGCAAGCAAGCCAAGGAGACCCCG...CTCTTGCTCAGTTCTGCCAAGCATGTTCTCTAGGCTTGGGCTAGTAGAGGCTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CAA 90 bp TCAGCCTCTACTAGCCCAAGCCTAGAGAACATGCTTGGCAGAACTGAGCAAGAGGTGTTGGCAGGTGCTTaGGCCACACTAGCAGGCACT +
Preference number: 5 (lower is better)
Translates to: SASTSPSLENMLGRTEQEVLAGA*ATLAGT
Trigger: AGTGCCTGCTAGTGTGGCCAAAGCACCTGCCAACAC...CTCTTGCTCAGTTCTGCCAAGCATGTTCTCTAGGCTTGGGCTAGTAGAGGCTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CAA 90 bp AAGACTAGAGAAGCTAGACATCTGCTAAAGGCCAGGGAAAGGGTGGAACTGATGCCCTCCGGGGTCTCCTaGGCTTGCTTGCTGTTCCTC +
Preference number: 5 (lower is better)
Translates to: KTREARHLLKARERVELMPSGVS*ACLLFL
Trigger: GAGGAACAGCAAGCAAGCCAAGGAGACCCCGGAGGG...CATCAGTTCCACCCTTTCCCTGGCCTTTAGCAGATGTCTAGCTTCTCTAGTCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CAA 90 bp TCAGCCTCTACTAGCCCAAGCCTAGAGAACATGCTTGGCAGAACTGAGCAAGAGACCAGCACACCTGGCTaGCTCATCTCTGGTCCAGAG +
Preference number: 5 (lower is better)
Translates to: SASTSPSLENMLGRTEQETSTPG*LISGPE
Trigger: CTCTGGACCAGAGATGAGCAAGCCAGGTGTGCTGGT...CTCTTGCTCAGTTCTGCCAAGCATGTTCTCTAGGCTTGGGCTAGTAGAGGCTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CAA 90 bp CAGGGAGGAGAAAGAAGCATGATGGAGATGAAGGCTGCTCTCTCAAAGACTGCCCGGCGCTGGAGATTATaGAAGAGTCCCCAGAGTGTG +
Preference number: 5 (lower is better)
Translates to: QGGERSMMEMKAALSKTARRWRL*KSPQSV
Trigger: CACACTCTGGGGACTCTTCAATAATCTCCAGCGCCG...GGCAGTCTTTGAGAGAGCAGCCTTCATCTCCATCATGCTTCTTTCTCCTCCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CAA 90 bp CTTCAGGCTTGGGCCAACAGGGATAAAGCTGGTGGAGATACCTCCTTAGGAGCAATAAACTCGAGTCACTaGATCAGCCAGCCCAGGCAG +
Preference number: 5 (lower is better)
Translates to: LQAWANRDKAGGDTSLGAINSSH*ISQPRQ
Trigger: CTGCCTGGGCTGGCTGATCAAGTGACTCGAGTTTAT...TGCTCCTAAGGAGGTATCTCCACCAGCTTTATCCCTGTTGGCCCAAGCCTGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CAA 90 bp GACTGGCTGTGGAGAGGGCCCAAAGGGGCAGAGCACTCAAAGCTCCCTAGAGACCTGGTAGTCACAGAATaGGTGAGTGTAGTACTGAAA +
Preference number: 5 (lower is better)
Translates to: DWLWRGPKGAEHSKLPRDLVVTE*VSVVLK
Trigger: TTTCAGTACTACACTCACCAATTCTGTGACTACCAG...GTCTCTAGGGAGCTTTGAGTGCTCTGCCCCTTTGGGCCCTCTCCACAGCCAGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CAA 90 bp AAGACTAGAGAAGCTAGACATCTGCTAAAGGCCAGGGAAAGGGTGGAACTGATGCGGGGTCTCCTTGGCTaGCTTGCTGTTCCTCTCAGG +
Preference number: 5 (lower is better)
Translates to: KTREARHLLKARERVELMRGLLG*LAVPLR
Trigger: CCTGAGAGGAACAGCAAGCAAGCCAAGGAGACCCCG...CATCAGTTCCACCCTTTCCCTGGCCTTTAGCAGATGTCTAGCTTCTCTAGTCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CAA 90 bp AGCATGATGGAGATGAAGGCTGCTCTCTCAAAGACTGCCATTACCAATATGCACCCCTCCGGGGTCTCCTaGGCTTGCTTGCTGTTCCTC +
Preference number: 5 (lower is better)
Translates to: SMMEMKAALSKTAITNMHPSGVS*ACLLFL
Trigger: GAGGAACAGCAAGCAAGCCAAGGAGACCCCGGAGGG...GTGCATATTGGTAATGGCAGTCTTTGAGAGAGCAGCCTTCATCTCCATCATGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CAA 90 bp CTTCAGGCTTGGGCCAACAGGGATAAAGCTGGTGGAGATACCTCCTTAGGAGCATTTGGTCCAGTCTGGTaGCCTCCAGTGGTGACTTTG +
Preference number: 5 (lower is better)
Translates to: LQAWANRDKAGGDTSLGAFGPVW*PPVVTL
Trigger: CAAAGTCACCACTGGAGGCAACCAGACTGGACCAAA...TGCTCCTAAGGAGGTATCTCCACCAGCTTTATCCCTGTTGGCCCAAGCCTGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CAA 90 bp CTACGCTTGTGTTTCAGAAGATCTGGGCGAGATGAGGGGCATTGTCAACAGTGCTCCTCTGGACCATGGTaGGGTTCTGAGACCAAGGAG +
Preference number: 5 (lower is better)
Translates to: LRLCFRRSGRDEGHCQQCSSGPW*GSETKE
Trigger: CTCCTTGGTCTCAGAACCCAACCATGGTCCAGAGGA...GCACTGTTGACAATGCCCCTCATCTCGCCCAGATCTTCTGAAACACAAGCGTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CAA 90 bp GCATTGTCAACAGTGCGATACCTCCTCATCTTCAGGCTTGGGCCAACAGGGATATCCTCTGGACCATGGTaGGGTTCTGAGACCAAGGAG +
Preference number: 5 (lower is better)
Translates to: ALSTVRYLLIFRLGPTGISSGPW*GSETKE
Trigger: CTCCTTGGTCTCAGAACCCAACCATGGTCCAGAGGA...TATCCCTGTTGGCCCAAGCCTGAAGATGAGGAGGTATCGCACTGTTGACAATGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CAA 90 bp GCATTGTCAACAGTGCGATACCTCCTCATCTTCAGGCTTGGGCCAACAGGGATAATAAACTCGAGTCACTaGATCAGCCAGCCCAGGCAG +
Preference number: 5 (lower is better)
Translates to: ALSTVRYLLIFRLGPTGIINSSH*ISQPRQ
Trigger: CTGCCTGGGCTGGCTGATCAAGTGACTCGAGTTTAT...TATCCCTGTTGGCCCAAGCCTGAAGATGAGGAGGTATCGCACTGTTGACAATGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CAA 90 bp GATGGAGATGAAGGCTGCTCTCTCAAAGACTGCCATTACCAATATGCACTCTGCGTGTCCTGGACAGGCTaGGGGCAACTTGGTGTCTCT +
Preference number: 5 (lower is better)
Translates to: DGDEGCSLKDCHYQYALCVSWTG*GQLGVS
Trigger: AGAGACACCAAGTTGCCCCAAGCCTGTCCAGGACAC...GCAGAGTGCATATTGGTAATGGCAGTCTTTGAGAGAGCAGCCTTCATCTCCATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CAA 90 bp AATATATTAGCATGTATGTGTGGGTGTGGGCGTGGGTCTGTGGGTATGTGTGTGACCAGCACACCTGGCTaGCTCATCTCTGGTCCAGAG +
Preference number: 5 (lower is better)
Translates to: NILACMCGCGRGSVGMCVTSTPG*LISGPE
Trigger: CTCTGGACCAGAGATGAGCAAGCCAGGTGTGCTGGT...CACACACATACCCACAGACCCACGCCCACACCCACACATACATGCTAATATATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CAA 90 bp GCAAGTATCTGTATCCTTCAAACTCAGAGGAGCCCAGTAAAAGGAAGAGCTGCCCGGCGCTGGAGATTATaGAAGAGTCCCCAGAGTGTG +
Preference number: 5 (lower is better)
Translates to: ASICILQTQRSPVKGRAARRWRL*KSPQSV
Trigger: CACACTCTGGGGACTCTTCAATAATCTCCAGCGCCG...GGCAGCTCTTCCTTTTACTGGGCTCCTCTGAGTTTGAAGGATACAGATACTTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CAA 90 bp GCATTGTCAACAGTGCGATACCTCCTCATCTTCAGGCTTGGGCCAACAGGGATAACCCAGTTCTGGTTCTaGCTCTTGATGCTCTCTGGA +
Preference number: 5 (lower is better)
Translates to: ALSTVRYLLIFRLGPTGITQFWF*LLMLSG
Trigger: TCCAGAGAGCATCAAGAGCAAGAACCAGAACTGGGT...TATCCCTGTTGGCCCAAGCCTGAAGATGAGGAGGTATCGCACTGTTGACAATGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CAA 90 bp CTACGCTTGTGTTTCAGAAGATCTGGGCGAGATGAGGGGCATTGTCAACAGTGCCCCGCATACACTGAGTaGCTGGGTAATTTTGATGGC +
Preference number: 5 (lower is better)
Translates to: LRLCFRRSGRDEGHCQQCPAYTE*LGNFDG
Trigger: GCCATCAAAATTACCCAGCAACTCAGTGTATGCGGG...GCACTGTTGACAATGCCCCTCATCTCGCCCAGATCTTCTGAAACACAAGCGTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CAA 90 bp TCCTCAGGCCTGGCAGTTGCTTCTGGCTTTCTTAAGAGTCCACAGAGAACCTCCTCAACACAGCAAAACTaGCTGTGGTTGTCTCGGATA +
Preference number: 5 (lower is better)
Translates to: SSGLAVASGFLKSPQRTSSTQQN*LWLSRI
Trigger: TATCCGAGACAACCACAGCAAGTTTTGCTGTGTTGA...GGAGGTTCTCTGTGGACTCTTAAGAAAGCCAGAAGCAACTGCCAGGCCTGAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
ENSMUST00000130597.8
CDS-3UTR CAA 90 bp TCTACTAGCCCAAGCCTAGAGAACATGCTTGGCAGAACTGAGCAAGAGAACAGCCCCGCATACACTGAGTaGCTGGGTAATTTTGATGGC +
Preference number: 5 (lower is better)
Translates to: STSPSLENMLGRTEQENSPAYTE*LGNFDG
Trigger: GCCATCAAAATTACCCAGCAACTCAGTGTATGCGGG...GCTGTTCTCTTGCTCAGTTCTGCCAAGCATGTTCTCTAGGCTTGGGCTAGTAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CAA 90 bp ATACCTCCTCATCTTCAGGCTTGGGCCAACAGGGATAAAGCTGGTGGAGATACCTCAACACAGCAAAACTaGCTGTGGTTGTCTCGGATA +
Preference number: 5 (lower is better)
Translates to: IPPHLQAWANRDKAGGDTSTQQN*LWLSRI
Trigger: TATCCGAGACAACCACAGCAAGTTTTGCTGTGTTGA...GGTATCTCCACCAGCTTTATCCCTGTTGGCCCAAGCCTGAAGATGAGGAGGTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
ENSMUST00000130597.8
CDS-3UTR CAA 90 bp AGCATGATGGAGATGAAGGCTGCTCTCTCAAAGACTGCCATTACCAATATGCACTTCTGGTTCTTGCTCTaGATGCTCTCTGGAGGGCTG +
Preference number: 5 (lower is better)
Translates to: SMMEMKAALSKTAITNMHFWFLL*MLSGGL
Trigger: CAGCCCTCCAGAGAGCATCAAGAGCAAGAACCAGAA...GTGCATATTGGTAATGGCAGTCTTTGAGAGAGCAGCCTTCATCTCCATCATGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CAA 90 bp CTCTCAAAGACTGCCATTACCAATATGCACTCTGCCTCTCACACTCTCACCTTATTCTGGTTCTTGCTCTaGATGCTCTCTGGAGGGCTG +
Preference number: 5 (lower is better)
Translates to: LSKTAITNMHSASHTLTLFWFLL*MLSGGL
Trigger: CAGCCCTCCAGAGAGCATCAAGAGCAAGAACCAGAA...TAAGGTGAGAGTGTGAGAGGCAGAGTGCATATTGGTAATGGCAGTCTTTGAGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CAA 90 bp GGGCAAGAACTTGTACTCACACCCTCTGAGATAAGTACTAGGCAAGTATCTGTAGCTGGAAGGAAACGGTaGGAGACACAGGTCCATAGG +
Preference number: 5 (lower is better)
Translates to: GQELVLTPSEISTRQVSVAGRKR*ETQVHR
Trigger: CCTATGGACCTGTGTCTCCAACCGTTTCCTTCCAGC...TACAGATACTTGCCTAGTACTTATCTCAGAGGGTGTGAGTACAAGTTCTTGCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CAA 90 bp CAGGGAGGAGAAAGAAGCATGATGGAGATGAAGGCTGCTCTCTCAAAGACTGCCGAACTGAGGGGCAACTaGGAAGACATGGTTTTTACT +
Preference number: 5 (lower is better)
Translates to: QGGERSMMEMKAALSKTAELRGN*EDMVFT
Trigger: AGTAAAAACCATGTCTTCCAAGTTGCCCCTCAGTTC...GGCAGTCTTTGAGAGAGCAGCCTTCATCTCCATCATGCTTCTTTCTCCTCCCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CAA 90 bp CTACGCTTGTGTTTCAGAAGATCTGGGCGAGATGAGGGGCATTGTCAACAGTGCGAACTGAGGGGCAACTaGGAAGACATGGTTTTTACT +
Preference number: 5 (lower is better)
Translates to: LRLCFRRSGRDEGHCQQCELRGN*EDMVFT
Trigger: AGTAAAAACCATGTCTTCCAAGTTGCCCCTCAGTTC...GCACTGTTGACAATGCCCCTCATCTCGCCCAGATCTTCTGAAACACAAGCGTAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CAA 90 bp CTCTCAAAGACTGCCATTACCAATATGCACTCTGCCTCTCACACTCTCACCTTAACCCAGTTCTGGTTCTaGCTCTTGATGCTCTCTGGA +
Preference number: 5 (lower is better)
Translates to: LSKTAITNMHSASHTLTLTQFWF*LLMLSG
Trigger: TCCAGAGAGCATCAAGAGCAAGAACCAGAACTGGGT...TAAGGTGAGAGTGTGAGAGGCAGAGTGCATATTGGTAATGGCAGTCTTTGAGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CAA 90 bp GGGCAAGAACTTGTACTCACACCCTCTGAGATAAGTACTAGGCAAGTATCTGTATTTGGTCCAGTCTGGTaGCCTCCAGTGGTGACTTTG +
Preference number: 5 (lower is better)
Translates to: GQELVLTPSEISTRQVSVFGPVW*PPVVTL
Trigger: CAAAGTCACCACTGGAGGCAACCAGACTGGACCAAA...TACAGATACTTGCCTAGTACTTATCTCAGAGGGTGTGAGTACAAGTTCTTGCCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS-3UTR CAA 90 bp CTCTCAAAGACTGCCATTACCAATATGCACTCTGCCTCTCACACTCTCACCTTATCAACACAGCAAAACTaGCTGTGGTTGTCTCGGATA +
Preference number: 5 (lower is better)
Translates to: LSKTAITNMHSASHTLTLSTQQN*LWLSRI
Trigger: TATCCGAGACAACCACAGCAAGTTTTGCTGTGTTGA...TAAGGTGAGAGTGTGAGAGGCAGAGTGCATATTGGTAATGGCAGTCTTTGAGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
ENSMUST00000130597.8
CDS-3UTR CAA 90 bp AAGACTAGAGAAGCTAGACATCTGCTAAAGGCCAGGGAAAGGGTGGAACTGATGCTGGTAGTCACAGAATaGGTGAGTGTAGTACTGAAA +
Preference number: 5 (lower is better)
Translates to: KTREARHLLKARERVELMLVVTE*VSVVLK
Trigger: TTTCAGTACTACACTCACCAATTCTGTGACTACCAG...CATCAGTTCCACCCTTTCCCTGGCCTTTAGCAGATGTCTAGCTTCTCTAGTCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
CDS GCA 72 bp GGCCGGCCAGCACGCTCTCCTGACTGCCCAGCCCTGTaGTTTAACAGTATCTGGTCACTAGCTGTGAGGCAG +
Preference number: 6 (lower is better)
Translates to: GRPARSPDCPAL*FNSIWSLAVRQ
Trigger: CTGCCTCACAGCTAGTGACCAGATACTGTTAAAGCACAGGGCTGGGCAGTCAGGAGAGCGTGCTGGCCGGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
CDS GCA 72 bp AACACAGGGCGAGGCCGGCCAGCACGCTCTCCTGACTaGCCAGCCCTGTGCTTTAACAGTATCTGGTCACTA +
Preference number: 6 (lower is better)
Translates to: NTGRGRPARSPD*PALCFNSIWSL
Trigger: TAGTGACCAGATACTGTTAAAGCACAGGGCTGGGCAGTCAGGAGAGCGTGCTGGCCGGCCTCGCCCTGTGTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130597.8
CDS GCA 72 bp AAGGCAGGATCTCCAGAACGTCAACACAGCAAAACTTaGTGTGGTTGTCTCGGATATACTTATAGGTCTTGT +
Preference number: 6 (lower is better)
Translates to: KAGSPERQHSKT*CGCLGYTYRSC
Trigger: ACAAGACCTATAAGTATATCCGAGACAACCACAGCAAGTTTTGCTGTGTTGACGTTCTGGAGATCCTGCCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041362.12
ENSMUST00000110199.3
ENSMUST00000130597.8