Pregenerated sensors for MASP2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028979Ensembl transcript IDs: ENSMUST00000052060.7, ENSMUST00000105701.9
Found 135 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGCAGGTTTATTATTGTCATGGTTAAGGTGAATGGGTGCTGTAGCTaGCAGTCATTCCAGCCTGACAGAGCAGCATCGTGTGGGCATGTA | + |
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Preference number: 1 (lower is better) Translates to: GRFIIVMVKVNGCCS*QSFQPDRAASCGHV Trigger: TACATGCCCACACGATGCTGCTCTGTCAGGCTGGAATGACTGCCAGCTACAGCACCCATTCACCTTAACCATGACAATAATAAACCTGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105701.9 |
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| 3UTR TCA 90 bp | TCTGTGTTGGGGGTTGGCCAAGCACTGTTAAACACAAATCAAAGCTaGTATTGGCAAGTGTTTGGACCTGTAACAATCTCACCTGCTCTG | + |
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Preference number: 1 (lower is better) Translates to: SVLGVGQALLNTNQS*YWQVFGPVTISPAL Trigger: CAGAGCAGGTGAGATTGTTACAGGTCCAAACACTTGCCAATATCAGCTTTGATTTGTGTTTAACAGTGCTTGGCCAACCCCCAACACAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| 3UTR CCA 90 bp | CCAAGCACTGTTAAACACAAATCAAAGCTGATATTGGCAAGTGTTTaGACCTGTAACAATCTCACCTGCTCTGATTTTGGGGTAGGCTGT | + |
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Preference number: 1 (lower is better) Translates to: PSTVKHKSKLILASV*TCNNLTCSDFGVGC Trigger: ACAGCCTACCCCAAAATCAGAGCAGGTGAGATTGTTACAGGTCCAAACACTTGCCAATATCAGCTTTGATTTGTGTTTAACAGTGCTTGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| 3UTR TCA 90 bp | ATATTCTGGAATGGACTTGGTGTTAATTTAATAGCTGATCTAATGTaGAGGTCACACACCTGCTTTCCGCTTACCTTCCAAAAGGTATTC | + |
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Preference number: 1 (lower is better) Translates to: IFWNGLGVNLIADLM*RSHTCFPLTFQKVF Trigger: GAATACCTTTTGGAAGGTAAGCGGAAAGCAGGTGTGTGACCTTCACATTAGATCAGCTATTAAATTAACACCAAGTCCATTCCAGAATAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| 3UTR TCA 90 bp | ATTGCCCTTGTAAAGGGTAAAATGCTGTTTCGTGTTCTTTTTATCTaGCAATTTGGTGAATCTGGTAGAACATGCCTATATCCCAATATT | + |
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Preference number: 1 (lower is better) Translates to: IALVKGKMLFRVLFI*QFGESGRTCLYPNI Trigger: AATATTGGGATATAGGCATGTTCTACCAGATTCACCAAATTGTCAGATAAAAAGAACACGAAACAGCATTTTACCCTTTACAAGGGCAAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| 3UTR-3UTR TCA 90 bp | GGGTGCTGTAGCTGGCAGTCATTCCAGCCTGACAGAGCAGCATCGTGTGGGCATGTACTGACTGGTATCTaGCTCACTGGGGTGGGCGGG | + |
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Preference number: 2 (lower is better) Translates to: GCCSWQSFQPDRAASCGHVLTGI*LTGVGG Trigger: CCCGCCCACCCCAGTGAGTCAGATACCAGTCAGTAC...ATGCCCACACGATGCTGCTCTGTCAGGCTGGAATGACTGCCAGCTACAGCACCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105701.9 |
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| 3UTR-3UTR TCA 90 bp | ACACCTGCTTTCCGCTTACCTTCCAAAAGGTATTCTGGAACCACTCAGAAGTTAAGGTACTTGGCGATATaGGGAACAATGATTGGACGA | + |
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Preference number: 2 (lower is better) Translates to: TPAFRLPSKRYSGTTQKLRYLAI*GTMIGR Trigger: TCGTCCAATCATTGTTCCTCATATCGCCAAGTACCT...TAACTTCTGAGTGGTTCCAGAATACCTTTTGGAAGGTAAGCGGAAAGCAGGTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| 3UTR CAA 90 bp | GTTGGGGGTTGGCCAAGCACTGTTAAACACAAATCAAAGCTGATATaGGCAAGTGTTTGGACCTGTAACAATCTCACCTGCTCTGATTTT | + |
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Preference number: 2 (lower is better) Translates to: VGGWPSTVKHKSKLI*ASVWTCNNLTCSDF Trigger: AAAATCAGAGCAGGTGAGATTGTTACAGGTCCAAACACTTGCCAATATCAGCTTTGATTTGTGTTTAACAGTGCTTGGCCAACCCCCAAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| 3UTR-3UTR TCA 90 bp | ACCTGCTTTCCGCTTACCTTCCAAAAGGTATTCTGGAACCACTCAGAAGTTACTAACACAAATCAAAGCTaGTATTGGCAAGTGTTTGGA | + |
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Preference number: 2 (lower is better) Translates to: TCFPLTFQKVFWNHSEVTNTNQS*YWQVFG Trigger: TCCAAACACTTGCCAATATCAGCTTTGATTTGTGTT...AGTAACTTCTGAGTGGTTCCAGAATACCTTTTGGAAGGTAAGCGGAAAGCAGGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| 3UTR-3UTR CCA 90 bp | TTCGTGTTCTTTTTATCTGACAATTTGGTGAATCTGGTAGAACATGCCTATATCCAACAAGCCCTTTGTTaGCCAGAAATGGAAACAGCC | + |
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Preference number: 2 (lower is better) Translates to: FVFFLSDNLVNLVEHAYIQQALC*PEMETA Trigger: GGCTGTTTCCATTTCTGGCCAACAAAGGGCTTGTTG...GATATAGGCATGTTCTACCAGATTCACCAAATTGTCAGATAAAAAGAACACGAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| 3UTR-3UTR TCA 90 bp | AGCCAGTTAAAATCAAACATGACCTTTAAGGTCAGCATCTTAGCAGAAGAGCAGCGTGTTCTTTTTATCTaGCAATTTGGTGAATCTGGT | + |
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Preference number: 2 (lower is better) Translates to: SQLKSNMTFKVSILAEEQRVLFI*QFGESG Trigger: ACCAGATTCACCAAATTGTCAGATAAAAAGAACACG...CTGCTCTTCTGCTAAGATGCTGACCTTAAAGGTCATGTTTGATTTTAACTGGCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| 3UTR TCA 72 bp | AGAGCAGCATCGTGTGGGCATGTACTGACTGGTATCTaGCTCACTGGGGTGGGCGGGCTGTTGCTGAGGGAG | + |
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Preference number: 3 (lower is better) Translates to: RAASCGHVLTGI*LTGVGGLLLRE Trigger: CTCCCTCAGCAACAGCCCGCCCACCCCAGTGAGTCAGATACCAGTCAGTACATGCCCACACGATGCTGCTCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105701.9 |
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| 3UTR GCA 72 bp | GGCAGGTTTATTATTGTCATGGTTAAGGTGAATGGGTaGTGTAGCTGGCAGTCATTCCAGCCTGACAGAGCA | + |
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Preference number: 3 (lower is better) Translates to: GRFIIVMVKVNG*CSWQSFQPDRA Trigger: TGCTCTGTCAGGCTGGAATGACTGCCAGCTACAGCACCCATTCACCTTAACCATGACAATAATAAACCTGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105701.9 |
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| 3UTR CCA 72 bp | ATTATTGTCATGGTTAAGGTGAATGGGTGCTGTAGCTaGCAGTCATTCCAGCCTGACAGAGCAGCATCGTGT | + |
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Preference number: 3 (lower is better) Translates to: IIVMVKVNGCCS*QSFQPDRAASC Trigger: ACACGATGCTGCTCTGTCAGGCTGGAATGACTGCCAGCTACAGCACCCATTCACCTTAACCATGACAATAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105701.9 |
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| 3UTR-3UTR CAA 90 bp | CTTTCCGCTTACCTTCCAAAAGGTATTCTGGAACCACTCAGAAGTTACTCAGAAGACACAACAAGCCCTTaGTTGGCCAGAAATGGAAAC | + |
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Preference number: 3 (lower is better) Translates to: LSAYLPKGILEPLRSYSEDTTSP*LARNGN Trigger: GTTTCCATTTCTGGCCAACAAAGGGCTTGTTGTGTC...TTCTGAGTAACTTCTGAGTGGTTCCAGAATACCTTTTGGAAGGTAAGCGGAAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| 3UTR TCA 72 bp | GGGGTTGGCCAAGCACTGTTAAACACAAATCAAAGCTaGTATTGGCAAGTGTTTGGACCTGTAACAATCTCA | + |
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Preference number: 3 (lower is better) Translates to: GVGQALLNTNQS*YWQVFGPVTIS Trigger: TGAGATTGTTACAGGTCCAAACACTTGCCAATATCAGCTTTGATTTGTGTTTAACAGTGCTTGGCCAACCCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| 3UTR CCA 72 bp | TATTTCCCCATCTTGAGGCACCCTGTCTTGCCTTGTTaGAAGAGCCAGTTAAAATCAAACATGACCTTTAAG | + |
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Preference number: 3 (lower is better) Translates to: YFPILRHPVLPC*KSQLKSNMTFK Trigger: CTTAAAGGTCATGTTTGATTTTAACTGGCTCTTCCAACAAGGCAAGACAGGGTGCCTCAAGATGGGGAAATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| 3UTR-3UTR CAA 90 bp | ACACCTGCTTTCCGCTTACCTTCCAAAAGGTATTCTGGAACCACTCAGAAGTTAAAATCAAAGCTGATATaGGCAAGTGTTTGGACCTGT | + |
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Preference number: 3 (lower is better) Translates to: TPAFRLPSKRYSGTTQKLKSKLI*ASVWTC Trigger: ACAGGTCCAAACACTTGCCAATATCAGCTTTGATTT...TAACTTCTGAGTGGTTCCAGAATACCTTTTGGAAGGTAAGCGGAAAGCAGGTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| 3UTR-3UTR CAA 90 bp | AGCCAGTTAAAATCAAACATGACCTTTAAGGTCAGCATCTTAGCAGAAGAGCAGCTGTCATTCTTAGGTTaGTTACTAAGCTTCCCAGGT | + |
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Preference number: 3 (lower is better) Translates to: SQLKSNMTFKVSILAEEQLSFLG*LLSFPG Trigger: ACCTGGGAAGCTTAGTAACAAACCTAAGAATGACAG...CTGCTCTTCTGCTAAGATGCTGACCTTAAAGGTCATGTTTGATTTTAACTGGCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| 3UTR TCA 72 bp | AATGGACTTGGTGTTAATTTAATAGCTGATCTAATGTaGAGGTCACACACCTGCTTTCCGCTTACCTTCCAA | + |
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Preference number: 3 (lower is better) Translates to: NGLGVNLIADLM*RSHTCFPLTFQ Trigger: TTGGAAGGTAAGCGGAAAGCAGGTGTGTGACCTTCACATTAGATCAGCTATTAAATTAACACCAAGTCCATT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| CDS-3UTR CCA 90 bp | GGGTGCTGTAGCTGGCAGTCATTCCAGCCTGACAGAGCAGCATCGTGTGGGCATCCTGCCCACACAGTGTaGCCAGCACCTTGGTCCCTG | + |
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Preference number: 4 (lower is better) Translates to: GCCSWQSFQPDRAASCGHPAHTV*PAPWSL Trigger: CAGGGACCAAGGTGCTGGCCACACTGTGTGGGCAGG...ATGCCCACACGATGCTGCTCTGTCAGGCTGGAATGACTGCCAGCTACAGCACCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105701.9 |
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| CDS-3UTR GCA 90 bp | AAGGTGAATGGGTGCTGTAGCTGGCAGTCATTCCAGCCTGACAGAGCAGCATCGGTGTCTGTACTCTCCTaGCCACACAGTGTGGCCAGC | + |
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Preference number: 4 (lower is better) Translates to: KVNGCCSWQSFQPDRAASVSVLS*PHSVAS Trigger: GCTGGCCACACTGTGTGGGCAGGAGAGTACAGACAC...CGATGCTGCTCTGTCAGGCTGGAATGACTGCCAGCTACAGCACCCATTCACCTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105701.9 |
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| CDS-3UTR CCA 90 bp | TGTAGCTGGCAGTCATTCCAGCCTGACAGAGCAGCATCGTGTGGGCATGTACTGGTCAGCATACTTCTCTaGGAAGCCAGGGGACACCAG | + |
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Preference number: 4 (lower is better) Translates to: CSWQSFQPDRAASCGHVLVSILL*EARGHQ Trigger: CTGGTGTCCCCTGGCTTCCCAGAGAAGTATGCTGAC...CAGTACATGCCCACACGATGCTGCTCTGTCAGGCTGGAATGACTGCCAGCTACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105701.9 |
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| CDS-3UTR TCA 90 bp | GTCATGGTTAAGGTGAATGGGTGCTGTAGCTGGCAGTCATTCCAGCCTGACAGAATGGTCACAAGGGACTaGGTCTCCCAGAGACACTCT | + |
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Preference number: 4 (lower is better) Translates to: VMVKVNGCCSWQSFQPDRMVTRD*VSQRHS Trigger: AGAGTGTCTCTGGGAGACTCAGTCCCTTGTGACCAT...TCTGTCAGGCTGGAATGACTGCCAGCTACAGCACCCATTCACCTTAACCATGAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105701.9 |
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| CDS-3UTR GCA 90 bp | ACACCTGCTTTCCGCTTACCTTCCAAAAGGTATTCTGGAACCACTCAGAAGTTAGCGGTAGCCAGGGGGTaGAGTCAGTGTCCAGGATCG | + |
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Preference number: 4 (lower is better) Translates to: TPAFRLPSKRYSGTTQKLAVARG*SQCPGS Trigger: CGATCCTGGACACTGACTGCACCCCCTGGCTACCGC...TAACTTCTGAGTGGTTCCAGAATACCTTTTGGAAGGTAAGCGGAAAGCAGGTGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| CDS-3UTR CCA 90 bp | TGTGTTGGGGGTTGGCCAAGCACTGTTAAACACAAATCAAAGCTGATATTGGCACCTGCCCACACAGTGTaGCCAGCACCTTGGTCCCTG | + |
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Preference number: 4 (lower is better) Translates to: CVGGWPSTVKHKSKLILAPAHTV*PAPWSL Trigger: CAGGGACCAAGGTGCTGGCCACACTGTGTGGGCAGG...TGCCAATATCAGCTTTGATTTGTGTTTAACAGTGCTTGGCCAACCCCCAACACA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| CDS-3UTR CCA 90 bp | ACCTGCTTTCCGCTTACCTTCCAAAAGGTATTCTGGAACCACTCAGAAGTTACTATTAGGTGGCGCCGTTaGATCAGGGCAGGGCCGTGC | + |
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Preference number: 4 (lower is better) Translates to: TCFPLTFQKVFWNHSEVTIRWRR*IRAGPC Trigger: GCACGGCCCTGCCCTGATCCAACGGCGCCACCTAAT...AGTAACTTCTGAGTGGTTCCAGAATACCTTTTGGAAGGTAAGCGGAAAGCAGGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| CDS-3UTR TCA 90 bp | ACCTGCTTTCCGCTTACCTTCCAAAAGGTATTCTGGAACCACTCAGAAGTTACTCCAGGTCAAAGTGGGTaGAGTAGAGGCGCAGGCGGT | + |
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Preference number: 4 (lower is better) Translates to: TCFPLTFQKVFWNHSEVTPGQSG*SRGAGG Trigger: ACCGCCTGCGCCTCTACTTCACCCACTTTGACCTGG...AGTAACTTCTGAGTGGTTCCAGAATACCTTTTGGAAGGTAAGCGGAAAGCAGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| CDS-3UTR GCA 90 bp | AGGTTTATTATTGTCATGGTTAAGGTGAATGGGTGCTGTAGCTGGCAGTCATTCGCGGTAGCCAGGGGGTaGAGTCAGTGTCCAGGATCG | + |
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Preference number: 4 (lower is better) Translates to: RFIIVMVKVNGCCSWQSFAVARG*SQCPGS Trigger: CGATCCTGGACACTGACTGCACCCCCTGGCTACCGC...GAATGACTGCCAGCTACAGCACCCATTCACCTTAACCATGACAATAATAAACCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105701.9 |
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| CDS-3UTR GCA 90 bp | ACACCTGCTTTCCGCTTACCTTCCAAAAGGTATTCTGGAACCACTCAGAAGTTAGGCGGATGCTGTAGGTaGAGCTGGAGAGCTTGGGGT | + |
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Preference number: 4 (lower is better) Translates to: TPAFRLPSKRYSGTTQKLGGCCR*SWRAWG Trigger: ACCCCAAGCTCTCCAGCTGCACCTACAGCATCCGCC...TAACTTCTGAGTGGTTCCAGAATACCTTTTGGAAGGTAAGCGGAAAGCAGGTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| CDS-3UTR GCA 90 bp | TGTGTTGGGGGTTGGCCAAGCACTGTTAAACACAAATCAAAGCTGATATTGGCACCCCACTGTCACCTCTaGAGCTGTCCTTGCCACCAG | + |
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Preference number: 4 (lower is better) Translates to: CVGGWPSTVKHKSKLILAPHCHL*SCPCHQ Trigger: CTGGTGGCAAGGACAGCTGCAGAGGTGACAGTGGGG...TGCCAATATCAGCTTTGATTTGTGTTTAACAGTGCTTGGCCAACCCCCAACACA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| CDS-3UTR TCA 90 bp | AGGTTTATTATTGTCATGGTTAAGGTGAATGGGTGCTGTAGCTGGCAGTCATTCCCAGGTCAAAGTGGGTaGAGTAGAGGCGCAGGCGGT | + |
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Preference number: 4 (lower is better) Translates to: RFIIVMVKVNGCCSWQSFPGQSG*SRGAGG Trigger: ACCGCCTGCGCCTCTACTTCACCCACTTTGACCTGG...GAATGACTGCCAGCTACAGCACCCATTCACCTTAACCATGACAATAATAAACCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105701.9 |
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| CDS-3UTR TCA 90 bp | ATTGTCATGGTTAAGGTGAATGGGTGCTGTAGCTGGCAGTCATTCCAGCCTGACTCCCTGAGCTCAACTTaGCAAAGTCATACTCGCAGC | + |
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Preference number: 4 (lower is better) Translates to: IVMVKVNGCCSWQSFQPDSLSST*QSHTRS Trigger: GCTGCGAGTATGACTTTGTCAAGTTGAGCTCAGGGA...GTCAGGCTGGAATGACTGCCAGCTACAGCACCCATTCACCTTAACCATGACAAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105701.9 |
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| CDS-3UTR GCA 90 bp | ACACCTGCTTTCCGCTTACCTTCCAAAAGGTATTCTGGAACCACTCAGAAGTTAGTGTCTGTACTCTCCTaGCCACACAGTGTGGCCAGC | + |
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Preference number: 4 (lower is better) Translates to: TPAFRLPSKRYSGTTQKLVSVLS*PHSVAS Trigger: GCTGGCCACACTGTGTGGGCAGGAGAGTACAGACAC...TAACTTCTGAGTGGTTCCAGAATACCTTTTGGAAGGTAAGCGGAAAGCAGGTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| CDS-3UTR GCA 90 bp | TGTGTTGGGGGTTGGCCAAGCACTGTTAAACACAAATCAAAGCTGATATTGGCACACTGGGCTTCAGGGTaGGTCTCCACATCGAAGGAC | + |
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Preference number: 4 (lower is better) Translates to: CVGGWPSTVKHKSKLILAHWASG*VSTSKD Trigger: GTCCTTCGATGTGGAGACGCACCCTGAAGCCCAGTG...TGCCAATATCAGCTTTGATTTGTGTTTAACAGTGCTTGGCCAACCCCCAACACA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| CDS-3UTR TCA 90 bp | CACAAATCAAAGCTGATATTGGCAAGTGTTTGGACCTGTAACAATCTCACCTGCAGTCGGAGTGGAAGGTaGCCTTTAGGCTGGGACCCA | + |
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Preference number: 4 (lower is better) Translates to: HKSKLILASVWTCNNLTCSRSGR*PLGWDP Trigger: TGGGTCCCAGCCTAAAGGTCACCTTCCACTCCGACT...GCAGGTGAGATTGTTACAGGTCCAAACACTTGCCAATATCAGCTTTGATTTGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| CDS-3UTR TCA 90 bp | ACACCTGCTTTCCGCTTACCTTCCAAAAGGTATTCTGGAACCACTCAGAAGTTACGTCAGTGGCAAAGGTaGTGGTCACCTTGTGGCTGT | + |
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Preference number: 4 (lower is better) Translates to: TPAFRLPSKRYSGTTQKLRQWQR*WSPCGC Trigger: ACAGCCACAAGGTGACCATCACCTTTGCCACTGACG...TAACTTCTGAGTGGTTCCAGAATACCTTTTGGAAGGTAAGCGGAAAGCAGGTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| CDS-3UTR GCA 90 bp | ACCTGCTTTCCGCTTACCTTCCAAAAGGTATTCTGGAACCACTCAGAAGTTACTAGGGCTGAGCACGTGTaGTTGTTCTGGTGGAGAACG | + |
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Preference number: 4 (lower is better) Translates to: TCFPLTFQKVFWNHSEVTRAEHV*LFWWRT Trigger: CGTTCTCCACCAGAACAAGCACACGTGCTCAGCCCT...AGTAACTTCTGAGTGGTTCCAGAATACCTTTTGGAAGGTAAGCGGAAAGCAGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| CDS-3UTR GCA 90 bp | AACGGAGGCAGGTTTATTATTGTCATGGTTAAGGTGAATGGGTGCTGTAGCTGGTGCTCTGAGCACGTGTaGTTGTTCTGGTGGAGAACG | + |
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Preference number: 4 (lower is better) Translates to: NGGRFIIVMVKVNGCCSWCSEHV*LFWWRT Trigger: CGTTCTCCACCAGAACAAGCACACGTGCTCAGAGCA...CCAGCTACAGCACCCATTCACCTTAACCATGACAATAATAAACCTGCCTCCGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105701.9 |
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| CDS-3UTR GCA 90 bp | ACCTGCTTTCCGCTTACCTTCCAAAAGGTATTCTGGAACCACTCAGAAGTTACTTCATTGCCAGGTGCCTaGTCAGTGTCTGTACTCTCC | + |
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Preference number: 4 (lower is better) Translates to: TCFPLTFQKVFWNHSEVTSLPGA*SVSVLS Trigger: GGAGAGTACAGACACTGAGCAGGCACCTGGCAATGA...AGTAACTTCTGAGTGGTTCCAGAATACCTTTTGGAAGGTAAGCGGAAAGCAGGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| CDS-3UTR GCA 90 bp | AACGGAGGCAGGTTTATTATTGTCATGGTTAAGGTGAATGGGTGCTGTAGCTGGAGTAGAAGGTGTCATTaGCAGGTGCCTGCTCAGTGT | + |
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Preference number: 4 (lower is better) Translates to: NGGRFIIVMVKVNGCCSWSRRCH*QVPAQC Trigger: ACACTGAGCAGGCACCTGGCAATGACACCTTCTACT...CCAGCTACAGCACCCATTCACCTTAACCATGACAATAATAAACCTGCCTCCGTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105701.9 |
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| CDS-3UTR GCA 90 bp | CACAAATCAAAGCTGATATTGGCAAGTGTTTGGACCTGTAACAATCTCACCTGCAGGGGGACAGAACCTTaGAGAAGCTCGAAGCCTGTC | + |
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Preference number: 4 (lower is better) Translates to: HKSKLILASVWTCNNLTCRGTEP*RSSKPV Trigger: GACAGGCTTCGAGCTTCTGCAAGGTTCTGTCCCCCT...GCAGGTGAGATTGTTACAGGTCCAAACACTTGCCAATATCAGCTTTGATTTGTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| CDS-3UTR CCA 90 bp | CACAAATCAAAGCTGATATTGGCAAGTGTTTGGACCTGTAACAATCTCACCTGCGTCAGCATACTTCTCTaGGAAGCCAGGGGACACCAG | + |
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Preference number: 4 (lower is better) Translates to: HKSKLILASVWTCNNLTCVSILL*EARGHQ Trigger: CTGGTGTCCCCTGGCTTCCCAGAGAAGTATGCTGAC...GCAGGTGAGATTGTTACAGGTCCAAACACTTGCCAATATCAGCTTTGATTTGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| CDS-3UTR TCA 90 bp | CTTTCCGCTTACCTTCCAAAAGGTATTCTGGAACCACTCAGAAGTTACTCAGAAATGGTCACAAGGGACTaGGTCTCCCAGAGACACTCT | + |
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Preference number: 4 (lower is better) Translates to: LSAYLPKGILEPLRSYSEMVTRD*VSQRHS Trigger: AGAGTGTCTCTGGGAGACTCAGTCCCTTGTGACCAT...TTCTGAGTAACTTCTGAGTGGTTCCAGAATACCTTTTGGAAGGTAAGCGGAAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| CDS-3UTR TCA 90 bp | CACAAATCAAAGCTGATATTGGCAAGTGTTTGGACCTGTAACAATCTCACCTGCGGTACTCAGGGCTACTaGGATACCCAGATCTTCCTG | + |
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Preference number: 4 (lower is better) Translates to: HKSKLILASVWTCNNLTCGTQGY*DTQIFL Trigger: CAGGAAGATCTGGGTATCTCAGTAGCCCTGAGTACC...GCAGGTGAGATTGTTACAGGTCCAAACACTTGCCAATATCAGCTTTGATTTGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| CDS-3UTR TCA 90 bp | ACCTGCTTTCCGCTTACCTTCCAAAAGGTATTCTGGAACCACTCAGAAGTTACTTCTGACAGACAGCAGTaGATGATTTCAGGGGGACAG | + |
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Preference number: 4 (lower is better) Translates to: TCFPLTFQKVFWNHSEVTSDRQQ*MISGGQ Trigger: CTGTCCCCCTGAAATCATTCACTGCTGTCTGTCAGA...AGTAACTTCTGAGTGGTTCCAGAATACCTTTTGGAAGGTAAGCGGAAAGCAGGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| CDS-3UTR GCA 90 bp | CACAAATCAAAGCTGATATTGGCAAGTGTTTGGACCTGTAACAATCTCACCTGCGGTGTCATTGCCAGGTaGCTGCTCAGTGTCTGTACT | + |
|
Preference number: 4 (lower is better) Translates to: HKSKLILASVWTCNNLTCGVIAR*LLSVCT Trigger: AGTACAGACACTGAGCAGGCACCTGGCAATGACACC...GCAGGTGAGATTGTTACAGGTCCAAACACTTGCCAATATCAGCTTTGATTTGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
||
| CDS-3UTR GCA 90 bp | AGGTTTATTATTGTCATGGTTAAGGTGAATGGGTGCTGTAGCTGGCAGTCATTCGGTGTCATTGCCAGGTaGCTGCTCAGTGTCTGTACT | + |
|
Preference number: 4 (lower is better) Translates to: RFIIVMVKVNGCCSWQSFGVIAR*LLSVCT Trigger: AGTACAGACACTGAGCAGGCACCTGGCAATGACACC...GAATGACTGCCAGCTACAGCACCCATTCACCTTAACCATGACAATAATAAACCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105701.9 |
||
| CDS-3UTR GCA 90 bp | ACCTGCTTTCCGCTTACCTTCCAAAAGGTATTCTGGAACCACTCAGAAGTTACTAGTAGAAGGTGTCATTaGCAGGTGCCTGCTCAGTGT | + |
|
Preference number: 4 (lower is better) Translates to: TCFPLTFQKVFWNHSEVTSRRCH*QVPAQC Trigger: ACACTGAGCAGGCACCTGGCAATGACACCTTCTACT...AGTAACTTCTGAGTGGTTCCAGAATACCTTTTGGAAGGTAAGCGGAAAGCAGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
||
| CDS-3UTR GCA 90 bp | CTTTCCGCTTACCTTCCAAAAGGTATTCTGGAACCACTCAGAAGTTACTCAGAACCCAGCAACAAGACTTaGCAAGGAAAGTCACCAGGC | + |
|
Preference number: 4 (lower is better) Translates to: LSAYLPKGILEPLRSYSEPSNKT*QGKSPG Trigger: GCCTGGTGACTTTCCTTGGCAAGTCTTGTTGCTGGG...TTCTGAGTAACTTCTGAGTGGTTCCAGAATACCTTTTGGAAGGTAAGCGGAAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
||
| CDS-3UTR CCA 90 bp | CTTTCCGCTTACCTTCCAAAAGGTATTCTGGAACCACTCAGAAGTTACTCAGAACTTCCTGTGAACACCTaGCCTGAACAAAGGGCTGAG | + |
|
Preference number: 4 (lower is better) Translates to: LSAYLPKGILEPLRSYSELPVNT*PEQRAE Trigger: CTCAGCCCTTTGTTCAGGCCAGGTGTTCACAGGAAG...TTCTGAGTAACTTCTGAGTGGTTCCAGAATACCTTTTGGAAGGTAAGCGGAAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
||
| CDS-3UTR CCA 90 bp | CACAAATCAAAGCTGATATTGGCAAGTGTTTGGACCTGTAACAATCTCACCTGCAATAATGCTGCACTCTaGCATCGGCCGGTCCCAAGA | + |
|
Preference number: 4 (lower is better) Translates to: HKSKLILASVWTCNNLTCNNAAL*HRPVPR Trigger: TCTTGGGACCGGCCGATGCCAGAGTGCAGCATTATT...GCAGGTGAGATTGTTACAGGTCCAAACACTTGCCAATATCAGCTTTGATTTGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
||
| CDS-3UTR CCA 90 bp | AGCCAGTTAAAATCAAACATGACCTTTAAGGTCAGCATCTTAGCAGAAGAGCAGAGTCCACATGGCCATTaGGTAGGTCATCAGGAGGGC | + |
|
Preference number: 4 (lower is better) Translates to: SQLKSNMTFKVSILAEEQSPHGH*VGHQEG Trigger: GCCCTCCTGATGACCTACCCAATGGCCATGTGGACT...CTGCTCTTCTGCTAAGATGCTGACCTTAAAGGTCATGTTTGATTTTAACTGGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
||
| CDS-3UTR TCA 90 bp | CACAAATCAAAGCTGATATTGGCAAGTGTTTGGACCTGTAACAATCTCACCTGCTCCCTGAGCTCAACTTaGCAAAGTCATACTCGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: HKSKLILASVWTCNNLTCSLSST*QSHTRS Trigger: GCTGCGAGTATGACTTTGTCAAGTTGAGCTCAGGGA...GCAGGTGAGATTGTTACAGGTCCAAACACTTGCCAATATCAGCTTTGATTTGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
||
| CDS-3UTR TCA 90 bp | CTTTCCGCTTACCTTCCAAAAGGTATTCTGGAACCACTCAGAAGTTACTCAGAATATGGCTTGCACAGGTaGAATGCTGCCATTAGGTGG | + |
|
Preference number: 4 (lower is better) Translates to: LSAYLPKGILEPLRSYSEYGLHR*NAAIRW Trigger: CCACCTAATGGCAGCATTTCACCTGTGCAAGCCATA...TTCTGAGTAACTTCTGAGTGGTTCCAGAATACCTTTTGGAAGGTAAGCGGAAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
||
| CDS-3UTR GCA 90 bp | ACACCTGCTTTCCGCTTACCTTCCAAAAGGTATTCTGGAACCACTCAGAAGTTAGCTCGAAGCCTGTCTTaGAGAAGACAGAAAACCTGT | + |
|
Preference number: 4 (lower is better) Translates to: TPAFRLPSKRYSGTTQKLARSLS*RRQKTC Trigger: ACAGGTTTTCTGTCTTCTGCAAGACAGGCTTCGAGC...TAACTTCTGAGTGGTTCCAGAATACCTTTTGGAAGGTAAGCGGAAAGCAGGTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
||
| CDS-3UTR GCA 90 bp | CACAAATCAAAGCTGATATTGGCAAGTGTTTGGACCTGTAACAATCTCACCTGCAAAGTCACCAGGCTTTaGAGGCTGCCCTCCAACTAT | + |
|
Preference number: 4 (lower is better) Translates to: HKSKLILASVWTCNNLTCKVTRL*RLPSNY Trigger: ATAGTTGGAGGGCAGCCTGCAAAGCCTGGTGACTTT...GCAGGTGAGATTGTTACAGGTCCAAACACTTGCCAATATCAGCTTTGATTTGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
||
| CDS-3UTR CCA 90 bp | TTCGTGTTCTTTTTATCTGACAATTTGGTGAATCTGGTAGAACATGCCTATATCGCAAGAAGCCCCTTCTaGGTTAACCCCCAGCCAGCC | + |
|
Preference number: 4 (lower is better) Translates to: FVFFLSDNLVNLVEHAYIARSPF*VNPQPA Trigger: GGCTGGCTGGGGGTTAACCCAGAAGGGGCTTCTTGC...GATATAGGCATGTTCTACCAGATTCACCAAATTGTCAGATAAAAAGAACACGAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
||
| CDS-3UTR TCA 90 bp | AGCCAGTTAAAATCAAACATGACCTTTAAGGTCAGCATCTTAGCAGAAGAGCAGACCCAGATCTTCCTGTaGACACCTGGCCTGAACAAA | + |
|
Preference number: 4 (lower is better) Translates to: SQLKSNMTFKVSILAEEQTQIFL*TPGLNK Trigger: TTTGTTCAGGCCAGGTGTTCACAGGAAGATCTGGGT...CTGCTCTTCTGCTAAGATGCTGACCTTAAAGGTCATGTTTGATTTTAACTGGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
||
| CDS-3UTR TCA 90 bp | CACAAATCAAAGCTGATATTGGCAAGTGTTTGGACCTGTAACAATCTCACCTGCTTCTCATATACAGCATaGGCGGCTGTTAGGACCCAA | + |
|
Preference number: 4 (lower is better) Translates to: HKSKLILASVWTCNNLTCFSYTA*AAVRTQ Trigger: TTGGGTCCTAACAGCCGCTCATGCTGTATATGAGAA...GCAGGTGAGATTGTTACAGGTCCAAACACTTGCCAATATCAGCTTTGATTTGTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
||
| CDS-3UTR TCA 90 bp | CACAAATCAAAGCTGATATTGGCAAGTGTTTGGACCTGTAACAATCTCACCTGCTTGAGTGTAATGAGGTaGGAGCCTTTTGAGGATGCC | + |
|
Preference number: 4 (lower is better) Translates to: HKSKLILASVWTCNNLTCLSVMR*EPFEDA Trigger: GGCATCCTCAAAAGGCTCTCACCTCATTACACTCAA...GCAGGTGAGATTGTTACAGGTCCAAACACTTGCCAATATCAGCTTTGATTTGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
||
| CDS-3UTR GCA 90 bp | AGCCAGTTAAAATCAAACATGACCTTTAAGGTCAGCATCTTAGCAGAAGAGCAGAAGTGCACCTGCTGCTaGTGTAGTTTGACCCAGCAA | + |
|
Preference number: 4 (lower is better) Translates to: SQLKSNMTFKVSILAEEQKCTCC*CSLTQQ Trigger: TTGCTGGGTCAAACTACAGCAGCAGCAGGTGCACTT...CTGCTCTTCTGCTAAGATGCTGACCTTAAAGGTCATGTTTGATTTTAACTGGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
||
| CDS-3UTR GCA 90 bp | CTTTCCGCTTACCTTCCAAAAGGTATTCTGGAACCACTCAGAAGTTACTCAGAATATAAGTGCACCTGCTaGTGCTGTAGTTTGACCCAG | + |
|
Preference number: 4 (lower is better) Translates to: LSAYLPKGILEPLRSYSEYKCTC*CCSLTQ Trigger: CTGGGTCAAACTACAGCAGCAGCAGGTGCACTTATA...TTCTGAGTAACTTCTGAGTGGTTCCAGAATACCTTTTGGAAGGTAAGCGGAAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
||
| CDS-3UTR CCA 90 bp | ACCTGCTTTCCGCTTACCTTCCAAAAGGTATTCTGGAACCACTCAGAAGTTACTCCTTCAGGACATATATaGCTTGCACAGGTGAAATGC | + |
|
Preference number: 4 (lower is better) Translates to: TCFPLTFQKVFWNHSEVTPSGHI*LAQVKC Trigger: GCATTTCACCTGTGCAAGCCATATATGTCCTGAAGG...AGTAACTTCTGAGTGGTTCCAGAATACCTTTTGGAAGGTAAGCGGAAAGCAGGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
||
| CDS-3UTR CCA 90 bp | ACCTGCTTTCCGCTTACCTTCCAAAAGGTATTCTGGAACCACTCAGAAGTTACTGCGGTACATTTTTGGTaGTCAGCAATTGGTATGTCC | + |
|
Preference number: 4 (lower is better) Translates to: TCFPLTFQKVFWNHSEVTAVHFW*SAIGMS Trigger: GGACATACCAATTGCTGACCACCAAAAATGTACCGC...AGTAACTTCTGAGTGGTTCCAGAATACCTTTTGGAAGGTAAGCGGAAAGCAGGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
||
| CDS-3UTR TCA 90 bp | ACACCTGCTTTCCGCTTACCTTCCAAAAGGTATTCTGGAACCACTCAGAAGTTACAAGATCCATCTTTCTaGCAGACAGCAGTGAATGAT | + |
|
Preference number: 4 (lower is better) Translates to: TPAFRLPSKRYSGTTQKLQDPSF*QTAVND Trigger: ATCATTCACTGCTGTCTGTCAGAAAGATGGATCTTG...TAACTTCTGAGTGGTTCCAGAATACCTTTTGGAAGGTAAGCGGAAAGCAGGTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
||
| CDS-3UTR CCA 90 bp | TTCGTGTTCTTTTTATCTGACAATTTGGTGAATCTGGTAGAACATGCCTATATCCTTGGGGTATGGCTGTaGGTACTCAGGGCTACTGAG | + |
|
Preference number: 4 (lower is better) Translates to: FVFFLSDNLVNLVEHAYILGVWL*VLRATE Trigger: CTCAGTAGCCCTGAGTACCCACAGCCATACCCCAAG...GATATAGGCATGTTCTACCAGATTCACCAAATTGTCAGATAAAAAGAACACGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
||
| 3UTR CAA 72 bp | TGGCCAAGCACTGTTAAACACAAATCAAAGCTGATATaGGCAAGTGTTTGGACCTGTAACAATCTCACCTGC | + |
|
Preference number: 4 (lower is better) Translates to: WPSTVKHKSKLI*ASVWTCNNLTC Trigger: GCAGGTGAGATTGTTACAGGTCCAAACACTTGCCAATATCAGCTTTGATTTGTGTTTAACAGTGCTTGGCCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
||
| CDS-3UTR TCA 90 bp | TTCGTGTTCTTTTTATCTGACAATTTGGTGAATCTGGTAGAACATGCCTATATCGCTGCTGCTGTAGTTTaGCCCAGCAACAAGACTTGC | + |
|
Preference number: 4 (lower is better) Translates to: FVFFLSDNLVNLVEHAYIAAAVV*PSNKTC Trigger: GCAAGTCTTGTTGCTGGGTCAAACTACAGCAGCAGC...GATATAGGCATGTTCTACCAGATTCACCAAATTGTCAGATAAAAAGAACACGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
||
| CDS-3UTR CCA 90 bp | CTTTCCGCTTACCTTCCAAAAGGTATTCTGGAACCACTCAGAAGTTACTCAGAAGCTTACTCTTACTCCTaGATAGAGCTTTTCATACAC | + |
|
Preference number: 4 (lower is better) Translates to: LSAYLPKGILEPLRSYSEAYSYS*IELFIH Trigger: GTGTATGAAAAGCTCTATCCAGGAGTAAGAGTAAGC...TTCTGAGTAACTTCTGAGTGGTTCCAGAATACCTTTTGGAAGGTAAGCGGAAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
||
| CDS-3UTR TCA 90 bp | TTCGTGTTCTTTTTATCTGACAATTTGGTGAATCTGGTAGAACATGCCTATATCCAGCCACAGTTCCAGTaGAGTCTGTTCTCATTAAGG | + |
|
Preference number: 4 (lower is better) Translates to: FVFFLSDNLVNLVEHAYIQPQFQ*SLFSLR Trigger: CCTTAATGAGAACAGACTTCACTGGAACTGTGGCTG...GATATAGGCATGTTCTACCAGATTCACCAAATTGTCAGATAAAAAGAACACGAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
||
| 3UTR CAA 72 bp | GACCAAATCTACACACTAGACACAACAAGCCCTTTGTaGGCCAGAAATGGAAACAGCCAGTATAAAATAAGT | + |
|
Preference number: 4 (lower is better) Translates to: DQIYTLDTTSPL*ARNGNSQYKIS Trigger: ACTTATTTTATACTGGCTGTTTCCATTTCTGGCCAACAAAGGGCTTGTTGTGTCTAGTGTGTAGATTTGGTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
||
| CDS-3UTR GCA 90 bp | CTTTCCGCTTACCTTCCAAAAGGTATTCTGGAACCACTCAGAAGTTACTCAGAAACACATATTTACCATTaGTGCTCATTGTGTAGAAAG | + |
|
Preference number: 4 (lower is better) Translates to: LSAYLPKGILEPLRSYSETHIYH*CSLCRK Trigger: CTTTCTACACAATGAGCAGCAATGGTAAATATGTGT...TTCTGAGTAACTTCTGAGTGGTTCCAGAATACCTTTTGGAAGGTAAGCGGAAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
||
| CDS-3UTR GCA 90 bp | TTCGTGTTCTTTTTATCTGACAATTTGGTGAATCTGGTAGAACATGCCTATATCATTGTCATGTATAAGTaGACCTGCTGCTGCTGTAGT | + |
|
Preference number: 4 (lower is better) Translates to: FVFFLSDNLVNLVEHAYIIVMYK*TCCCCS Trigger: ACTACAGCAGCAGCAGGTGCACTTATACATGACAAT...GATATAGGCATGTTCTACCAGATTCACCAAATTGTCAGATAAAAAGAACACGAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
||
| 3UTR CAA 72 bp | GTAAAATGCTGTTTCGTGTTCTTTTTATCTGACAATTaGGTGAATCTGGTAGAACATGCCTATATCCCAATA | + |
|
Preference number: 4 (lower is better) Translates to: VKCCFVFFLSDN*VNLVEHAYIPI Trigger: TATTGGGATATAGGCATGTTCTACCAGATTCACCAAATTGTCAGATAAAAAGAACACGAAACAGCATTTTAC 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
||
| CDS TCA 90 bp | GAAGCCAGGGGACACCAGGCGCCCGAATACAGGTTCAGGCCACTTTaGACCCAGAAGTGTGGCCACCAAACTCCACAGCAGACCCAGGAA | + |
|
Preference number: 5 (lower is better) Translates to: EARGHQAPEYRFRPL*TQKCGHQTPQQTQE Trigger: TTCCTGGGTCTGCTGTGGAGTTTGGTGGCCACACTTCTGGGTTCAAAGTGGCCTGAACCTGTATTCGGGCGCCTGGTGTCCCCTGGCTTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052060.7 ENSMUST00000105701.9 |
||
| CDS TCA 90 bp | CAAAGTCATACTCGCAGCGGTAAGAGAGTTCCAGGTCAAAGTGGGTaGAGTAGAGGCGCAGGCGGTAGCCAGGGGGTGCAGTCAGTGTCC | + |
|
Preference number: 5 (lower is better) Translates to: QSHTRSGKRVPGQSG*SRGAGGSQGVQSVS Trigger: GGACACTGACTGCACCCCCTGGCTACCGCCTGCGCCTCTACTTCACCCACTTTGACCTGGAACTCTCTTACCGCTGCGAGTATGACTTTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000052060.7 ENSMUST00000105701.9 |
||
| CDS CCA 90 bp | GTCCTCCAGGCGGATGCTGTAGGTGCAGCTGGAGAGCTTGGGGTATaGCTGTGGGTACTCAGGGCTACTGAGATACCCAGATCTTCCTGT | + |
|
Preference number: 5 (lower is better) Translates to: VLQADAVGAAGELGV*LWVLRATEIPRSSC Trigger: ACAGGAAGATCTGGGTATCTCAGTAGCCCTGAGTACCCACAGCCATACCCCAAGCTCTCCAGCTGCACCTACAGCATCCGCCTGGAGGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
||
| CDS GCA 90 bp | CAGGTCAAAGTGGGTGAAGTAGAGGCGCAGGCGGTAGCCAGGGGGTaGAGTCAGTGTCCAGGATCGATCTTGATGGTCAGCATACTTCTC | + |
|
Preference number: 5 (lower is better) Translates to: QVKVGEVEAQAVARG*SQCPGSILMVSILL Trigger: GAGAAGTATGCTGACCATCAAGATCGATCCTGGACACTGACTGCACCCCCTGGCTACCGCCTGCGCCTCTACTTCACCCACTTTGACCTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000052060.7 ENSMUST00000105701.9 |
||
| CDS GCA 90 bp | GGGCTGAGCACGTGTGCTTGTTCTGGTGGAGAACGTAGCCCGCTCTaGAGGAGCAATAGTAGCCGCCCAAGTAGTTGTGGCAATAATGGT | + |
|
Preference number: 5 (lower is better) Translates to: GLSTCACSGGERSPL*RSNSSRPSSCGNNG Trigger: ACCATTATTGCCACAACTACTTGGGCGGCTACTATTGCTCCTGCAGAGCGGGCTACGTTCTCCACCAGAACAAGCACACGTGCTCAGCCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
||
| CDS-3UTR CAA 90 bp | AAGGTGAATGGGTGCTGTAGCTGGCAGTCATTCCAGCCTGACAGAGCAGCATCGCAGGTTCAGGCCACTTaGAACCCAGAAGTGTGGCCA | + |
|
Preference number: 5 (lower is better) Translates to: KVNGCCSWQSFQPDRAASQVQAT*NPEVWP Trigger: TGGCCACACTTCTGGGTTCAAAGTGGCCTGAACCTG...CGATGCTGCTCTGTCAGGCTGGAATGACTGCCAGCTACAGCACCCATTCACCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105701.9 |
||
| CDS TCA 90 bp | GTCTGTACTCTCCTGCCCACACAGTGTGGCCAGCACCTTGGTCCCTaGGCTCAACTTGACAAAGTCATACTCGCAGCGGTAAGAGAGTTC | + |
|
Preference number: 5 (lower is better) Translates to: VCTLLPTQCGQHLGP*AQLDKVILAAVREF Trigger: GAACTCTCTTACCGCTGCGAGTATGACTTTGTCAAGTTGAGCTCAGGGACCAAGGTGCTGGCCACACTGTGTGGGCAGGAGAGTACAGAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052060.7 ENSMUST00000105701.9 |
||
| CDS TCA 90 bp | GAAGACAGAAAACCTGTCCTTCAGGACATATATGGCTTGCACAGGTaGAATGCTGCCATTAGGTGGCGCCGTTGGATCAGGGCAGGGCCG | + |
|
Preference number: 5 (lower is better) Translates to: EDRKPVLQDIYGLHR*NAAIRWRRWIRAGP Trigger: CGGCCCTGCCCTGATCCAACGGCGCCACCTAATGGCAGCATTTCACCTGTGCAAGCCATATATGTCCTGAAGGACAGGTTTTCTGTCTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
||
| CDS TCA 90 bp | CTGGCATCGGCCGGTCCCAAGATCCATCTTTCTGACAGACAGCAGTaGATGATTTCAGGGGGACAGAACCTTGCAGAAGCTCGAAGCCTG | + |
|
Preference number: 5 (lower is better) Translates to: LASAGPKIHLSDRQQ*MISGGQNLAEARSL Trigger: CAGGCTTCGAGCTTCTGCAAGGTTCTGTCCCCCTGAAATCATTCACTGCTGTCTGTCAGAAAGATGGATCTTGGGACCGGCCGATGCCAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
||
| CDS GCA 90 bp | GCTCTGAGCACGTGTGCTTGTTCTGGTGGAGAACGTAGCCCGCTCTaGAGGAGCAATAGTAGCCGCCCAAGTAGTTGTGGCAATAATGGT | + |
|
Preference number: 5 (lower is better) Translates to: ALSTCACSGGERSPL*RSNSSRPSSCGNNG Trigger: ACCATTATTGCCACAACTACTTGGGCGGCTACTATTGCTCCTGCAGAGCGGGCTACGTTCTCCACCAGAACAAGCACACGTGCTCAGAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105701.9 |
||
| CDS CCA 90 bp | GTGTGGTTCCCCGACTCGTCAGTGGCAAAGGTGATGGTCACCTTGTaGCTGTCAGTTTCAATCCTGGGAGGCAGCGTCTTCCCACAAAAT | + |
|
Preference number: 5 (lower is better) Translates to: VWFPDSSVAKVMVTL*LSVSILGGSVFPQN Trigger: ATTTTGTGGGAAGACGCTGCCTCCCAGGATTGAAACTGACAGCCACAAGGTGACCATCACCTTTGCCACTGACGAGTCGGGGAACCACAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
||
| CDS TCA 90 bp | CATCGGCCGGTCCCAAGATCCATCTTTCTGACAGACAGCAGTGAATaGTTTCAGGGGGACAGAACCTTGCAGAAGCTCGAAGCCTGTCTT | + |
|
Preference number: 5 (lower is better) Translates to: HRPVPRSIFLTDSSE*FQGDRTLQKLEACL Trigger: AAGACAGGCTTCGAGCTTCTGCAAGGTTCTGTCCCCCTGAAATCATTCACTGCTGTCTGTCAGAAAGATGGATCTTGGGACCGGCCGATG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
||
| CDS TCA 90 bp | AGATTTCCTCGGGCCAGGCTTGAGTGTAATGAGGTGAGAGCCTTTTaGGGATGCCCATTCGGATGTTCAGGGAGGACGCTGCCATTCTTT | + |
|
Preference number: 5 (lower is better) Translates to: RFPRARLECNEVRAF*GCPFGCSGRTLPFF Trigger: AAAGAATGGCAGCGTCCTCCCTGAACATCCGAATGGGCATCCTCAAAAGGCTCTCACCTCATTACACTCAAGCCTGGCCCGAGGAAATCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
||
| CDS GCA 90 bp | TGTGGCAATAATGGTCACAAGGGACTGAGTCTCCCAGAGACACTCTaGATTCATCCACATCCTCCGCTGCATAGAAGGCCTCAAACCCTG | + |
|
Preference number: 5 (lower is better) Translates to: CGNNGHKGLSLPETL*IHPHPPLHRRPQTL Trigger: CAGGGTTTGAGGCCTTCTATGCAGCGGAGGATGTGGATGAATGCAGAGTGTCTCTGGGAGACTCAGTCCCTTGTGACCATTATTGCCACA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052060.7 ENSMUST00000105701.9 |
||
| CDS CCA 90 bp | GTGGCTGTCAGTTTCAATCCTGGGAGGCAGCGTCTTCCCACAAAATaGGCCGTGTTCCCCCTTGTCTGTTTGAATCTTGAGGGAGTCATA | + |
|
Preference number: 5 (lower is better) Translates to: VAVSFNPGRQRLPTK*AVFPLVCLNLEGVI Trigger: TATGACTCCCTCAAGATTCAAACAGACAAGGGGGAACACGGCCCATTTTGTGGGAAGACGCTGCCTCCCAGGATTGAAACTGACAGCCAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
||
| CDS TCA 90 bp | ATAATGCTGCACTCTGGCATCGGCCGGTCCCAAGATCCATCTTTCTaGCAGACAGCAGTGAATGATTTCAGGGGGACAGAACCTTGCAGA | + |
|
Preference number: 5 (lower is better) Translates to: IMLHSGIGRSQDPSF*QTAVNDFRGTEPCR Trigger: TCTGCAAGGTTCTGTCCCCCTGAAATCATTCACTGCTGTCTGTCAGAAAGATGGATCTTGGGACCGGCCGATGCCAGAGTGCAGCATTAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
||
| CDS GCA 90 bp | GTCTTGCAGAAGACAGAAAACCTGTCCTTCAGGACATATATGGCTTaGACAGGTGAAATGCTGCCATTAGGTGGCGCCGTTGGATCAGGG | + |
|
Preference number: 5 (lower is better) Translates to: VLQKTENLSFRTYMA*TGEMLPLGGAVGSG Trigger: CCCTGATCCAACGGCGCCACCTAATGGCAGCATTTCACCTGTGCAAGCCATATATGTCCTGAAGGACAGGTTTTCTGTCTTCTGCAAGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| CDS TCA 90 bp | TTCATGTATAAAGATTTCCTCGGGCCAGGCTTGAGTGTAATGAGGTaGGAGCCTTTTGAGGATGCCCATTCGGATGTTCAGGGAGGACGC | + |
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Preference number: 5 (lower is better) Translates to: FMYKDFLGPGLSVMR*EPFEDAHSDVQGGR Trigger: GCGTCCTCCCTGAACATCCGAATGGGCATCCTCAAAAGGCTCTCACCTCATTACACTCAAGCCTGGCCCGAGGAAATCTTTATACATGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| CDS TCA 90 bp | CGGATGTTCAGGGAGGACGCTGCCATTCTTTTCTCATATACAGCATaGGCGGCTGTTAGGACCCAATTGTCATGTATAAGTGCACCTGCT | + |
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Preference number: 5 (lower is better) Translates to: RMFREDAAILFSYTA*AAVRTQLSCISAPA Trigger: AGCAGGTGCACTTATACATGACAATTGGGTCCTAACAGCCGCTCATGCTGTATATGAGAAAAGAATGGCAGCGTCCTCCCTGAACATCCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| CDS CCA 90 bp | ATTGGTATGTCCACAAACATTAGGTTTCTAGCAAGAAGCCCCTTCTaGGTTAACCCCCAGCCAGCCACAGTTCCAGTGAAGTCTGTTCTC | + |
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Preference number: 5 (lower is better) Translates to: IGMSTNIRFLARSPF*VNPQPATVPVKSVL Trigger: GAGAACAGACTTCACTGGAACTGTGGCTGGCTGGGGGTTAACCCAGAAGGGGCTTCTTGCTAGAAACCTAATGTTTGTGGACATACCAAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| CDS-3UTR CAA 90 bp | ACCTGCTTTCCGCTTACCTTCCAAAAGGTATTCTGGAACCACTCAGAAGTTACTCAGGTTCAGGCCACTTaGAACCCAGAAGTGTGGCCA | + |
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Preference number: 5 (lower is better) Translates to: TCFPLTFQKVFWNHSEVTQVQAT*NPEVWP Trigger: TGGCCACACTTCTGGGTTCAAAGTGGCCTGAACCTG...AGTAACTTCTGAGTGGTTCCAGAATACCTTTTGGAAGGTAAGCGGAAAGCAGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| CDS-3UTR CAA 90 bp | AGCCAGTTAAAATCAAACATGACCTTTAAGGTCAGCATCTTAGCAGAAGAGCAGGAAAGTCACCAGGCTTaGCAGGCTGCCCTCCAACTA | + |
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Preference number: 5 (lower is better) Translates to: SQLKSNMTFKVSILAEEQESHQA*QAALQL Trigger: TAGTTGGAGGGCAGCCTGCAAAGCCTGGTGACTTTC...CTGCTCTTCTGCTAAGATGCTGACCTTAAAGGTCATGTTTGATTTTAACTGGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| CDS-3UTR CAA 90 bp | ACCTGCTTTCCGCTTACCTTCCAAAAGGTATTCTGGAACCACTCAGAAGTTACTTGCTGCTGCTGTAGTTaGACCCAGCAACAAGACTTG | + |
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Preference number: 5 (lower is better) Translates to: TCFPLTFQKVFWNHSEVTCCCCS*TQQQDL Trigger: CAAGTCTTGTTGCTGGGTCAAACTACAGCAGCAGCA...AGTAACTTCTGAGTGGTTCCAGAATACCTTTTGGAAGGTAAGCGGAAAGCAGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| CDS-3UTR CAA 90 bp | AGCCAGTTAAAATCAAACATGACCTTTAAGGTCAGCATCTTAGCAGAAGAGCAGAGCTCGAAGCCTGTCTaGCAGAAGACAGAAAACCTG | + |
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Preference number: 5 (lower is better) Translates to: SQLKSNMTFKVSILAEEQSSKPV*QKTENL Trigger: CAGGTTTTCTGTCTTCTGCAAGACAGGCTTCGAGCT...CTGCTCTTCTGCTAAGATGCTGACCTTAAAGGTCATGTTTGATTTTAACTGGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| CDS-3UTR CAA 90 bp | AGCCAGTTAAAATCAAACATGACCTTTAAGGTCAGCATCTTAGCAGAAGAGCAGGGGAGTTTTTCTCCTTaGGAGCTCGTCCAGAATCCA | + |
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Preference number: 5 (lower is better) Translates to: SQLKSNMTFKVSILAEEQGSFSP*ELVQNP Trigger: TGGATTCTGGACGAGCTCCAAAGGAGAAAAACTCCC...CTGCTCTTCTGCTAAGATGCTGACCTTAAAGGTCATGTTTGATTTTAACTGGCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| CDS-3UTR CAA 90 bp | ACCTGCTTTCCGCTTACCTTCCAAAAGGTATTCTGGAACCACTCAGAAGTTACTGGCATGATGCTTCCGTaGATTGTGACTTTGTTCTTG | + |
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Preference number: 5 (lower is better) Translates to: TCFPLTFQKVFWNHSEVTGMMLP*IVTLFL Trigger: CAAGAACAAAGTCACAATCAACGGAAGCATCATGCC...AGTAACTTCTGAGTGGTTCCAGAATACCTTTTGGAAGGTAAGCGGAAAGCAGGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| CDS-3UTR CAA 90 bp | AGCCAGTTAAAATCAAACATGACCTTTAAGGTCAGCATCTTAGCAGAAGAGCAGAAGGTGATGGTCACCTaGTGGCTGTCAGTTTCAATC | + |
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Preference number: 5 (lower is better) Translates to: SQLKSNMTFKVSILAEEQKVMVT*WLSVSI Trigger: GATTGAAACTGACAGCCACAAGGTGACCATCACCTT...CTGCTCTTCTGCTAAGATGCTGACCTTAAAGGTCATGTTTGATTTTAACTGGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| CDS-3UTR CAA 90 bp | TTCGTGTTCTTTTTATCTGACAATTTGGTGAATCTGGTAGAACATGCCTATATCACCCAGCAACAAGACTaGCCAAGGAAAGTCACCAGG | + |
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Preference number: 5 (lower is better) Translates to: FVFFLSDNLVNLVEHAYITQQQD*PRKVTR Trigger: CCTGGTGACTTTCCTTGGCAAGTCTTGTTGCTGGGT...GATATAGGCATGTTCTACCAGATTCACCAAATTGTCAGATAAAAAGAACACGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| CDS-3UTR CAA 90 bp | AGCCAGTTAAAATCAAACATGACCTTTAAGGTCAGCATCTTAGCAGAAGAGCAGGCTGTTAGGACCCAATaGTCATGTATAAGTGCACCT | + |
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Preference number: 5 (lower is better) Translates to: SQLKSNMTFKVSILAEEQAVRTQ*SCISAP Trigger: AGGTGCACTTATACATGACAATTGGGTCCTAACAGC...CTGCTCTTCTGCTAAGATGCTGACCTTAAAGGTCATGTTTGATTTTAACTGGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| CDS-3UTR CAA 90 bp | TTCGTGTTCTTTTTATCTGACAATTTGGTGAATCTGGTAGAACATGCCTATATCTTCCCCCTTGTCTGTTaGAATCTTGAGGGAGTCATA | + |
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Preference number: 5 (lower is better) Translates to: FVFFLSDNLVNLVEHAYIFPLVC*NLEGVI Trigger: TATGACTCCCTCAAGATTCAAACAGACAAGGGGGAA...GATATAGGCATGTTCTACCAGATTCACCAAATTGTCAGATAAAAAGAACACGAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| CDS CAA 90 bp | GCGCAGGCGGTAGCCAGGGGGTGCAGTCAGTGTCCAGGATCGATCTaGATGGTCAGCATACTTCTCTGGGAAGCCAGGGGACACCAGGCG | + |
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Preference number: 6 (lower is better) Translates to: AQAVARGCSQCPGSI*MVSILLWEARGHQA Trigger: CGCCTGGTGTCCCCTGGCTTCCCAGAGAAGTATGCTGACCATCAAGATCGATCCTGGACACTGACTGCACCCCCTGGCTACCGCCTGCGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000052060.7 ENSMUST00000105701.9 |
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| CDS CAA 72 bp | GTGGCGCCGTTGGATCAGGGCAGGGCCGTGCTGTGCTaGTGTAGTGTATCTTCCAGCCTGTGTGGTTCCCCG | + |
|
Preference number: 6 (lower is better) Translates to: VAPLDQGRAVLC*CSVSSSLCGSP Trigger: CGGGGAACCACACAGGCTGGAAGATACACTACACAAGCACAGCACGGCCCTGCCCTGATCCAACGGCGCCAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| CDS CAA 90 bp | GGAAGCCAGGGGACACCAGGCGCCCGAATACAGGTTCAGGCCACTTaGAACCCAGAAGTGTGGCCACCAAACTCCACAGCAGACCCAGGA | + |
|
Preference number: 6 (lower is better) Translates to: GSQGTPGARIQVQAT*NPEVWPPNSTADPG Trigger: TCCTGGGTCTGCTGTGGAGTTTGGTGGCCACACTTCTGGGTTCAAAGTGGCCTGAACCTGTATTCGGGCGCCTGGTGTCCCCTGGCTTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052060.7 ENSMUST00000105701.9 |
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| CDS GCA 72 bp | TCATTGCCAGGTGCCTGCTCAGTGTCTGTACTCTCCTaGCCACACAGTGTGGCCAGCACCTTGGTCCCTGAG | + |
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Preference number: 6 (lower is better) Translates to: SLPGACSVSVLS*PHSVASTLVPE Trigger: CTCAGGGACCAAGGTGCTGGCCACACTGTGTGGGCAGGAGAGTACAGACACTGAGCAGGCACCTGGCAATGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052060.7 ENSMUST00000105701.9 |
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| CDS TCA 72 bp | GGACACCAGGCGCCCGAATACAGGTTCAGGCCACTTTaGACCCAGAAGTGTGGCCACCAAACTCCACAGCAG | + |
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Preference number: 6 (lower is better) Translates to: GHQAPEYRFRPL*TQKCGHQTPQQ Trigger: CTGCTGTGGAGTTTGGTGGCCACACTTCTGGGTTCAAAGTGGCCTGAACCTGTATTCGGGCGCCTGGTGTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052060.7 ENSMUST00000105701.9 |
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| CDS CAA 72 bp | GGGACACCAGGCGCCCGAATACAGGTTCAGGCCACTTaGAACCCAGAAGTGTGGCCACCAAACTCCACAGCA | + |
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Preference number: 6 (lower is better) Translates to: GTPGARIQVQAT*NPEVWPPNSTA Trigger: TGCTGTGGAGTTTGGTGGCCACACTTCTGGGTTCAAAGTGGCCTGAACCTGTATTCGGGCGCCTGGTGTCCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052060.7 ENSMUST00000105701.9 |
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| CDS CAA 90 bp | CCTGTGTGGTTCCCCGACTCGTCAGTGGCAAAGGTGATGGTCACCTaGTGGCTGTCAGTTTCAATCCTGGGAGGCAGCGTCTTCCCACAA | + |
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Preference number: 6 (lower is better) Translates to: PVWFPDSSVAKVMVT*WLSVSILGGSVFPQ Trigger: TTGTGGGAAGACGCTGCCTCCCAGGATTGAAACTGACAGCCACAAGGTGACCATCACCTTTGCCACTGACGAGTCGGGGAACCACACAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| CDS TCA 72 bp | CTCCTGCCCACACAGTGTGGCCAGCACCTTGGTCCCTaGGCTCAACTTGACAAAGTCATACTCGCAGCGGTA | + |
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Preference number: 6 (lower is better) Translates to: LLPTQCGQHLGP*AQLDKVILAAV Trigger: TACCGCTGCGAGTATGACTTTGTCAAGTTGAGCTCAGGGACCAAGGTGCTGGCCACACTGTGTGGGCAGGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052060.7 ENSMUST00000105701.9 |
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| CDS TCA 72 bp | CGGGCCAGGCTTGAGTGTAATGAGGTGAGAGCCTTTTaGGGATGCCCATTCGGATGTTCAGGGAGGACGCTG | + |
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Preference number: 6 (lower is better) Translates to: RARLECNEVRAF*GCPFGCSGRTL Trigger: CAGCGTCCTCCCTGAACATCCGAATGGGCATCCTCAAAAGGCTCTCACCTCATTACACTCAAGCCTGGCCCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| CDS GCA 72 bp | CCTTTAGGCTGGGACCCAGTGAGTAGAAGGTGTCATTaGCAGGTGCCTGCTCAGTGTCTGTACTCTCCTGCC | + |
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Preference number: 6 (lower is better) Translates to: PLGWDPVSRRCH*QVPAQCLYSPA Trigger: GGCAGGAGAGTACAGACACTGAGCAGGCACCTGGCAATGACACCTTCTACTCACTGGGTCCCAGCCTAAAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052060.7 ENSMUST00000105701.9 |
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| CDS GCA 72 bp | ACGTGTGCTTGTTCTGGTGGAGAACGTAGCCCGCTCTaGAGGAGCAATAGTAGCCGCCCAAGTAGTTGTGGC | + |
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Preference number: 6 (lower is better) Translates to: TCACSGGERSPL*RSNSSRPSSCG Trigger: GCCACAACTACTTGGGCGGCTACTATTGCTCCTGCAGAGCGGGCTACGTTCTCCACCAGAACAAGCACACGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052060.7 ENSMUST00000105701.9 |
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| CDS CAA 72 bp | GTAGCCAGGGGGTGCAGTCAGTGTCCAGGATCGATCTaGATGGTCAGCATACTTCTCTGGGAAGCCAGGGGA | + |
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Preference number: 6 (lower is better) Translates to: VARGCSQCPGSI*MVSILLWEARG Trigger: TCCCCTGGCTTCCCAGAGAAGTATGCTGACCATCAAGATCGATCCTGGACACTGACTGCACCCCCTGGCTAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000052060.7 ENSMUST00000105701.9 |
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| CDS CAA 72 bp | TTCCCCGACTCGTCAGTGGCAAAGGTGATGGTCACCTaGTGGCTGTCAGTTTCAATCCTGGGAGGCAGCGTC | + |
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Preference number: 6 (lower is better) Translates to: FPDSSVAKVMVT*WLSVSILGGSV Trigger: GACGCTGCCTCCCAGGATTGAAACTGACAGCCACAAGGTGACCATCACCTTTGCCACTGACGAGTCGGGGAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| CDS TCA 72 bp | CCACATCCTCCGCTGCATAGAAGGCCTCAAACCCTGTaGACGGCTTCTCATTGGAGTAGTCGGAGTGGAAGG | + |
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Preference number: 6 (lower is better) Translates to: PHPPLHRRPQTL*TASHWSSRSGR Trigger: CCTTCCACTCCGACTACTCCAATGAGAAGCCGTTCACAGGGTTTGAGGCCTTCTATGCAGCGGAGGATGTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052060.7 ENSMUST00000105701.9 |
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| CDS TCA 72 bp | AGCCTGTGTGGTTCCCCGACTCGTCAGTGGCAAAGGTaGTGGTCACCTTGTGGCTGTCAGTTTCAATCCTGG | + |
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Preference number: 6 (lower is better) Translates to: SLCGSPTRQWQR*WSPCGCQFQSW Trigger: CCAGGATTGAAACTGACAGCCACAAGGTGACCATCACCTTTGCCACTGACGAGTCGGGGAACCACACAGGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| CDS GCA 72 bp | AAGACTTGCCAAGGAAAGTCACCAGGCTTTGCAGGCTaGCCTCCAACTATGCGTCCTCCTATAGTGTGTGTG | + |
|
Preference number: 6 (lower is better) Translates to: KTCQGKSPGFAG*PPTMRPPIVCV Trigger: CACACACACTATAGGAGGACGCATAGTTGGAGGGCAGCCTGCAAAGCCTGGTGACTTTCCTTGGCAAGTCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| CDS CCA 72 bp | GTCATCAGGAGGGCCACAATCAATAATGCTGCACTCTaGCATCGGCCGGTCCCAAGATCCATCTTTCTGACA | + |
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Preference number: 6 (lower is better) Translates to: VIRRATINNAAL*HRPVPRSIFLT Trigger: TGTCAGAAAGATGGATCTTGGGACCGGCCGATGCCAGAGTGCAGCATTATTGATTGTGGCCCTCCTGATGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| CDS CAA 90 bp | TATAAGTGCACCTGCTGCTGCTGTAGTTTGACCCAGCAACAAGACTaGCCAAGGAAAGTCACCAGGCTTTGCAGGCTGCCCTCCAACTAT | + |
|
Preference number: 6 (lower is better) Translates to: YKCTCCCCSLTQQQD*PRKVTRLCRLPSNY Trigger: ATAGTTGGAGGGCAGCCTGCAAAGCCTGGTGACTTTCCTTGGCAAGTCTTGTTGCTGGGTCAAACTACAGCAGCAGCAGGTGCACTTATA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| CDS TCA 72 bp | AAACCTGTCCTTCAGGACATATATGGCTTGCACAGGTaGAATGCTGCCATTAGGTGGCGCCGTTGGATCAGG | + |
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Preference number: 6 (lower is better) Translates to: KPVLQDIYGLHR*NAAIRWRRWIR Trigger: CCTGATCCAACGGCGCCACCTAATGGCAGCATTTCACCTGTGCAAGCCATATATGTCCTGAAGGACAGGTTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| CDS TCA 72 bp | GCCGGTCCCAAGATCCATCTTTCTGACAGACAGCAGTaGATGATTTCAGGGGGACAGAACCTTGCAGAAGCT | + |
|
Preference number: 6 (lower is better) Translates to: AGPKIHLSDRQQ*MISGGQNLAEA Trigger: AGCTTCTGCAAGGTTCTGTCCCCCTGAAATCATTCACTGCTGTCTGTCAGAAAGATGGATCTTGGGACCGGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| CDS TCA 72 bp | AAAGATTTCCTCGGGCCAGGCTTGAGTGTAATGAGGTaGGAGCCTTTTGAGGATGCCCATTCGGATGTTCAG | + |
|
Preference number: 6 (lower is better) Translates to: KDFLGPGLSVMR*EPFEDAHSDVQ Trigger: CTGAACATCCGAATGGGCATCCTCAAAAGGCTCTCACCTCATTACACTCAAGCCTGGCCCGAGGAAATCTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| CDS TCA 72 bp | CCTTCTGGGTTAACCCCCAGCCAGCCACAGTTCCAGTaGAGTCTGTTCTCATTAAGGATGCAGCTTCTTTTC | + |
|
Preference number: 6 (lower is better) Translates to: PSGLTPSQPQFQ*SLFSLRMQLLF Trigger: GAAAAGAAGCTGCATCCTTAATGAGAACAGACTTCACTGGAACTGTGGCTGGCTGGGGGTTAACCCAGAAGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| CDS GCA 72 bp | CAGACAGCAGTGAATGATTTCAGGGGGACAGAACCTTaGAGAAGCTCGAAGCCTGTCTTGCAGAAGACAGAA | + |
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Preference number: 6 (lower is better) Translates to: QTAVNDFRGTEP*RSSKPVLQKTE Trigger: TTCTGTCTTCTGCAAGACAGGCTTCGAGCTTCTGCAAGGTTCTGTCCCCCTGAAATCATTCACTGCTGTCTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| CDS GCA 72 bp | TTTGAGGATGCCCATTCGGATGTTCAGGGAGGACGCTaGCATTCTTTTCTCATATACAGCATGAGCGGCTGT | + |
|
Preference number: 6 (lower is better) Translates to: FEDAHSDVQGGR*HSFLIYSMSGC Trigger: ACAGCCGCTCATGCTGTATATGAGAAAAGAATGGCAGCGTCCTCCCTGAACATCCGAATGGGCATCCTCAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| CDS TCA 72 bp | GTCCCAAGATCCATCTTTCTGACAGACAGCAGTGAATaGTTTCAGGGGGACAGAACCTTGCAGAAGCTCGAA | + |
|
Preference number: 6 (lower is better) Translates to: VPRSIFLTDSSE*FQGDRTLQKLE Trigger: TTCGAGCTTCTGCAAGGTTCTGTCCCCCTGAAATCATTCACTGCTGTCTGTCAGAAAGATGGATCTTGGGAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| CDS GCA 72 bp | AAGACAGAAAACCTGTCCTTCAGGACATATATGGCTTaGACAGGTGAAATGCTGCCATTAGGTGGCGCCGTT | + |
|
Preference number: 6 (lower is better) Translates to: KTENLSFRTYMA*TGEMLPLGGAV Trigger: AACGGCGCCACCTAATGGCAGCATTTCACCTGTGCAAGCCATATATGTCCTGAAGGACAGGTTTTCTGTCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| CDS CCA 72 bp | GCCAGCACAGAGCATGTTAGCGCTTACTCTTACTCCTaGATAGAGCTTTTCATACACGGCGGTACATTTTTG | + |
|
Preference number: 6 (lower is better) Translates to: ASTEHVSAYSYS*IELFIHGGTFL Trigger: CAAAAATGTACCGCCGTGTATGAAAAGCTCTATCCAGGAGTAAGAGTAAGCGCTAACATGCTCTGTGCTGGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| CDS CAA 90 bp | GATGCAGCTTCTTTTCGCGGTAGGCAAACAGGCATGATGCTTCCGTaGATTGTGACTTTGTTCTTGAGTTTAATCAATGCTATATCATTG | + |
|
Preference number: 6 (lower is better) Translates to: DAASFRGRQTGMMLP*IVTLFLSLINAISL Trigger: CAATGATATAGCATTGATTAAACTCAAGAACAAAGTCACAATCAACGGAAGCATCATGCCTGTTTGCCTACCGCGAAAAGAAGCTGCATC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| CDS CAA 90 bp | TTTCGCGGTAGGCAAACAGGCATGATGCTTCCGTTGATTGTGACTTaGTTCTTGAGTTTAATCAATGCTATATCATTGTCAAAACCAGCA | + |
|
Preference number: 6 (lower is better) Translates to: FRGRQTGMMLPLIVT*FLSLINAISLSKPA Trigger: TGCTGGTTTTGACAATGATATAGCATTGATTAAACTCAAGAACAAAGTCACAATCAACGGAAGCATCATGCCTGTTTGCCTACCGCGAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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| CDS CAA 72 bp | ACAGGCATGATGCTTCCGTTGATTGTGACTTTGTTCTaGAGTTTAATCAATGCTATATCATTGTCAAAACCA | + |
|
Preference number: 6 (lower is better) Translates to: TGMMLPLIVTLF*SLINAISLSKP Trigger: TGGTTTTGACAATGATATAGCATTGATTAAACTCAAGAACAAAGTCACAATCAACGGAAGCATCATGCCTGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052060.7 |
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