RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MASP1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022887

Ensembl transcript IDs: ENSMUST00000089883.7, ENSMUST00000229619.2, ENSMUST00000230040.2

Found 384 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GAGAGAGAGAGAGAGAGAGAGAGGAGCCTGCCAGGGCCTGCCTTCTaGTGCCCATGCTTAGAGGCGAGAAGGGGGATGGGGCTCAGGAAA +
Preference number: 1 (lower is better)
Translates to: ERERERERSLPGPAF*CPCLEARRGMGLRK
Trigger: TTTCCTGAGCCCCATCCCCCTTCTCGCCTCTAAGCATGGGCAGCAGAAGGCAGGCCCTGGCAGGCTCCTCTCTCTCTCTCTCTCTCTCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR GCA 90 bp AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGCCTGCCAGGGCCTaGCTTCTGCTGCCCATGCTTAGAGGCGAGAAGGGGGATGGGGCT +
Preference number: 1 (lower is better)
Translates to: REREREREREEPARA*LLLPMLRGEKGDGA
Trigger: AGCCCCATCCCCCTTCTCGCCTCTAAGCATGGGCAGCAGAAGGCAGGCCCTGGCAGGCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR GCA 90 bp CTGCAGCAGGCCACAGCAGCAGTCACTATGACCTGTATAACAGACTaGTCAGCAAGAGCTGTGGAGGGGCAGGCGCATTGCCTCCAAGCA +
Preference number: 1 (lower is better)
Translates to: LQQATAAVTMTCITD*SARAVEGQAHCLQA
Trigger: TGCTTGGAGGCAATGCGCCTGCCCCTCCACAGCTCTTGCTGAGCAGTCTGTTATACAGGTCATAGTGACTGCTGCTGTGGCCTGCTGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR CCA 90 bp TGCCCTCTGGTATTTGAGTGGCACATGGGCCCGATGTGTTCGGAGTaGACAGCAGTGTTTCAGGGCTTGGGAGAGCTGCAGTTGGTCTTC +
Preference number: 1 (lower is better)
Translates to: CPLVFEWHMGPMCSE*TAVFQGLGELQLVF
Trigger: GAAGACCAACTGCAGCTCTCCCAAGCCCTGAAACACTGCTGTCCACTCCGAACACATCGGGCCCATGTGCCACTCAAATACCAGAGGGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
3UTR CCA 90 bp GGAGTGGCAGGTGTTGACACCTCATGGTGCCCTCTGGTATTTGAGTaGCACATGGGCCCGATGTGTTCGGAGTGGACAGCAGTGTTTCAG +
Preference number: 1 (lower is better)
Translates to: GVAGVDTSWCPLVFE*HMGPMCSEWTAVFQ
Trigger: CTGAAACACTGCTGTCCACTCCGAACACATCGGGCCCATGTGCCACTCAAATACCAGAGGGCACCATGAGGTGTCAACACCTGCCACTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
3UTR CCA 90 bp GTTCGGAGTGGACAGCAGTGTTTCAGGGCTTGGGAGAGCTGCAGTTaGTCTTCTCCTTCAGGTAGCAGAGCCATCGTGGTATCTTTCGGT +
Preference number: 1 (lower is better)
Translates to: VRSGQQCFRAWESCS*SSPSGSRAIVVSFG
Trigger: ACCGAAAGATACCACGATGGCTCTGCTACCTGAAGGAGAAGACCAACTGCAGCTCTCCCAAGCCCTGAAACACTGCTGTCCACTCCGAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
3UTR CCA 90 bp CTGAGCCTGGTTTGGGCTTTTGAAAACCTCAAAGCCCACTTCCAGTaGCACATTTCCTCCACAAGGCCACTCCACTCCTGTACGGTGACA +
Preference number: 1 (lower is better)
Translates to: LSLVWAFENLKAHFQ*HISSTRPLHSCTVT
Trigger: TGTCACCGTACAGGAGTGGAGTGGCCTTGTGGAGGAAATGTGCCACTGGAAGTGGGCTTTGAGGTTTTCAAAAGCCCAAACCAGGCTCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR TCA 90 bp AGACCAGGGAAAGGTGGTTCAACGAATCCCAGTATCACCCAGGAATaGGCAGTGAAGACTGAGGACCAGGGAGGAAAGGTTGCTTGCATT +
Preference number: 1 (lower is better)
Translates to: RPGKGGSTNPSITQE*AVKTEDQGGKVACI
Trigger: AATGCAAGCAACCTTTCCTCCCTGGTCCTCAGTCTTCACTGCTCATTCCTGGGTGATACTGGGATTCGTTGAACCACCTTTCCCTGGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR TCA 90 bp GACCCAAAGAGGCAGTCAGCTGTCCATCATTACAAAAATTTTGAGTaGTGGAGCCTGGATCCAGCCTGGCTGGCTTTGCTACTCTGCCTC +
Preference number: 1 (lower is better)
Translates to: DPKRQSAVHHYKNFE*WSLDPAWLALLLCL
Trigger: GAGGCAGAGTAGCAAAGCCAGCCAGGCTGGATCCAGGCTCCATCACTCAAAATTTTTGTAATGATGGACAGCTGACTGCCTCTTTGGGTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR TCA 90 bp AAGTCACATGTGTGTCACAGTTCCACCAGGAATGTCTGGAAGCCATaGCCCATATGTTTCTCACTGCAGCAGGCCACAGCAGCAGTCACT +
Preference number: 1 (lower is better)
Translates to: KSHVCHSSTRNVWKP*PICFSLQQATAAVT
Trigger: AGTGACTGCTGCTGTGGCCTGCTGCAGTGAGAAACATATGGGTCATGGCTTCCAGACATTCCTGGTGGAACTGTGACACACATGTGACTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR CCA 90 bp CCTGGCTGGCTTTGCTACTCTGCCTCTATAAAGACCAGGGAAAGGTaGTTCAACGAATCCCAGTATCACCCAGGAATGAGCAGTGAAGAC +
Preference number: 1 (lower is better)
Translates to: PGWLCYSASIKTRER*FNESQYHPGMSSED
Trigger: GTCTTCACTGCTCATTCCTGGGTGATACTGGGATTCGTTGAACCACCTTTCCCTGGTCTTTATAGAGGCAGAGTAGCAAAGCCAGCCAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR TCA 90 bp AACAGACCCAAAGAGGCAGTCAGCTGTCCATCATTACAAAAATTTTaGGTGATGGAGCCTGGATCCAGCCTGGCTGGCTTTGCTACTCTG +
Preference number: 1 (lower is better)
Translates to: NRPKEAVSCPSLQKF*VMEPGSSLAGFATL
Trigger: CAGAGTAGCAAAGCCAGCCAGGCTGGATCCAGGCTCCATCACTCAAAATTTTTGTAATGATGGACAGCTGACTGCCTCTTTGGGTCTGTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR TCA 90 bp GGGAGTTGGGGCTATCTCAGGAGCATGAGTGTGCTGCAGTTTATTTaGTCTGGTAAGAATCATGGACTATGCTGTTGGCAGTGTGTGGTG +
Preference number: 1 (lower is better)
Translates to: GSWGYLRSMSVLQFI*SGKNHGLCCWQCVV
Trigger: CACCACACACTGCCAACAGCATAGTCCATGATTCTTACCAGATCAAATAAACTGCAGCACACTCATGCTCCTGAGATAGCCCCAACTCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
3UTR CCA 90 bp GGCAGTCAGCTGTCCATCATTACAAAAATTTTGAGTGATGGAGCCTaGATCCAGCCTGGCTGGCTTTGCTACTCTGCCTCTATAAAGACC +
Preference number: 1 (lower is better)
Translates to: GSQLSIITKILSDGA*IQPGWLCYSASIKT
Trigger: GGTCTTTATAGAGGCAGAGTAGCAAAGCCAGCCAGGCTGGATCCAGGCTCCATCACTCAAAATTTTTGTAATGATGGACAGCTGACTGCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR GCA 90 bp ACAAAAATTTTGAGTGATGGAGCCTGGATCCAGCCTGGCTGGCTTTaGTACTCTGCCTCTATAAAGACCAGGGAAAGGTGGTTCAACGAA +
Preference number: 1 (lower is better)
Translates to: TKILSDGAWIQPGWL*YSASIKTRERWFNE
Trigger: TTCGTTGAACCACCTTTCCCTGGTCTTTATAGAGGCAGAGTAGCAAAGCCAGCCAGGCTGGATCCAGGCTCCATCACTCAAAATTTTTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR CCA 90 bp TTTTATCATGGCAAGAGCATGGTGGCATGCAGGCAAACATGGTGCTaGAGAATTGGCCAAAACTCCTACATCTTTATCCACAGGCAGCAG +
Preference number: 1 (lower is better)
Translates to: FYHGKSMVACRQTWC*RIGQNSYIFIHRQQ
Trigger: CTGCTGCCTGTGGATAAAGATGTAGGAGTTTTGGCCAATTCTCCAGCACCATGTTTGCCTGCATGCCACCATGCTCTTGCCATGATAAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR CCA 90 bp TTGGTACTTAGCTCAAGTGCCGAACGACATTGCTGGCTGTGTAACTaGGGTCACGTCATAGGGCTGAGAATTGTATTTTGTTTGCATTTT +
Preference number: 1 (lower is better)
Translates to: LVLSSSAERHCWLCN*GHVIGLRIVFCLHF
Trigger: AAAATGCAAACAAAATACAATTCTCAGCCCTATGACGTGACCCCAGTTACACAGCCAGCAATGTCGTTCGGCACTTGAGCTAAGTACCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR CCA 90 bp TTGGTTCTCATGTTGAATGCTGGTTTTCTGGAAATATCATTACTATaGGAGGGGCTGGTGGTATCTGAGTGGATGCAGACTCCTGTTTTT +
Preference number: 1 (lower is better)
Translates to: LVLMLNAGFLEISLL*EGLVVSEWMQTPVF
Trigger: AAAAACAGGAGTCTGCATCCACTCAGATACCACCAGCCCCTCCCATAGTAATGATATTTCCAGAAAACCAGCATTCAACATGAGAACCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR CCA 90 bp AGTAAAGAACCTCAGATAACAGAACTTCATCCCAAAAAGTGTGGCTaGGACATACACTTTCTGAATATGAAAACATCCAGACTCGCCCAC +
Preference number: 1 (lower is better)
Translates to: SKEPQITELHPKKCG*DIHFLNMKTSRLAH
Trigger: GTGGGCGAGTCTGGATGTTTTCATATTCAGAAAGTGTATGTCCCAGCCACACTTTTTGGGATGAAGTTCTGTTATCTGAGGTTCTTTACT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000230040.2
3UTR-3UTR GCA 90 bp AGGAGCCTGCCAGGGCCTGCCTTCTGCTGCCCATGCTTAGAGGCGAGAAGGGGGCTGGCTTTGCTACTCTaGCTCTATAAAGACCAGGGA +
Preference number: 2 (lower is better)
Translates to: RSLPGPAFCCPCLEARRGLALLL*LYKDQG
Trigger: TCCCTGGTCTTTATAGAGGCAGAGTAGCAAAGCCAG...CCCCCTTCTCGCCTCTAAGCATGGGCAGCAGAAGGCAGGCCCTGGCAGGCTCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR-3UTR GCA 90 bp CGACAGGAATCAGAGAAATGGCAACCTAAGCTCAGCTGGGATGCAGAGAGCGGGGAGCCTGCCAGGGCCTaGCTTCTGCTGCCCATGCTT +
Preference number: 2 (lower is better)
Translates to: RQESEKWQPKLSWDAESGEPARA*LLLPML
Trigger: AAGCATGGGCAGCAGAAGGCAGGCCCTGGCAGGCTC...CCCGCTCTCTGCATCCCAGCTGAGCTTAGGTTGCCATTTCTCTGATTCCTGTCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR-3UTR TCA 90 bp AGTCTCCATACACGTGGCTGGGGGCAGGTCACTTTCCAGAGCTGGAGGGCTGCTTGGTGTAACCTCACTTaGACTGGGGCAGGGAAGTAC +
Preference number: 2 (lower is better)
Translates to: SLHTRGWGQVTFQSWRAAWCNLT*TGAGKY
Trigger: GTACTTCCCTGCCCCAGTTCAAGTGAGGTTACACCA...AGCAGCCCTCCAGCTCTGGAAAGTGACCTGCCCCCAGCCACGTGTATGGAGACT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
3UTR-3UTR GCA 90 bp CGACAGGAATCAGAGAAATGGCAACCTAAGCTCAGCTGGGATGCAGAGAGCGGGGGGCCTGCCTTCTGCTaGCCATGCTTAGAGGCGAGA +
Preference number: 2 (lower is better)
Translates to: RQESEKWQPKLSWDAESGGPAFC*PCLEAR
Trigger: TCTCGCCTCTAAGCATGGGCAGCAGAAGGCAGGCCC...CCCGCTCTCTGCATCCCAGCTGAGCTTAGGTTGCCATTTCTCTGATTCCTGTCG
58% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR-3UTR CCA 90 bp TGGGGGCAGGTCACTTTCCAGAGCTGGAGGGCTGCTCTGTGTTTGTGTGGAGTGCTCGGGCTCTGCTCTTaGTCCCCCAAACCTGAATTG +
Preference number: 2 (lower is better)
Translates to: WGQVTFQSWRAALCLCGVLGLCS*SPKPEL
Trigger: CAATTCAGGTTTGGGGGACCAAGAGCAGAGCCCGAG...CACTCCACACAAACACAGAGCAGCCCTCCAGCTCTGGAAAGTGACCTGCCCCCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
3UTR-3UTR CCA 90 bp GCACTGGTCAGACCCTATGGGACCTTCCAGATGAGGAGACTGAAGCTCACAGGAAGGCTCCAAGCCTTCTaGAAACTCCGCCCCTACTGG +
Preference number: 2 (lower is better)
Translates to: ALVRPYGTFQMRRLKLTGRLQAF*KLRPYW
Trigger: CCAGTAGGGGCGGAGTTTCCAGAAGGCTTGGAGCCT...TCCTGTGAGCTTCAGTCTCCTCATCTGGAAGGTCCCATAGGGTCTGACCAGTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
3UTR-3UTR CCA 90 bp GCTGCTCTGTGTTTGTGTGGAGTGGCAGGTGTTGACACCTCATGGTGCCCTCTGCCGATGTGTTCGGAGTaGACAGCAGTGTTTCAGGGC +
Preference number: 2 (lower is better)
Translates to: AALCLCGVAGVDTSWCPLPMCSE*TAVFQG
Trigger: GCCCTGAAACACTGCTGTCCACTCCGAACACATCGG...CAGAGGGCACCATGAGGTGTCAACACCTGCCACTCCACACAAACACAGAGCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
3UTR-3UTR CCA 90 bp GAAGATGGAGCTAGGGACAGAACCCAGGACTCATGGCTCTCTGTCTCTTTCCAACACAGTGGGGCACAGTaGGGCACAGTGGGGCACAGT +
Preference number: 2 (lower is better)
Translates to: EDGARDRTQDSWLSVSFQHSGAQ*GTVGHS
Trigger: ACTGTGCCCCACTGTGCCCCACTGTGCCCCACTGTG...TTGGAAAGAGACAGAGAGCCATGAGTCCTGGGTTCTGTCCCTAGCTCCATCTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
3UTR-3UTR TCA 90 bp AGAAATGGCAACCTAAGCTCAGCTGGGATGCAGAGAGCGGGATGCGGAGAGCGAATGAGCAGTGAAGACTaGGGACCAGGGAGGAAAGGT +
Preference number: 2 (lower is better)
Translates to: RNGNLSSAGMQRAGCGERMSSED*GPGRKG
Trigger: ACCTTTCCTCCCTGGTCCTCAGTCTTCACTGCTCAT...TCGCTCTCCGCATCCCGCTCTCTGCATCCCAGCTGAGCTTAGGTTGCCATTTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR-3UTR TCA 90 bp GGCAACCTAAGCTCAGCTGGGATGCAGAGAGCGGGATGCGGAGAGCGAGAAGGAATCTTTGGCTGCACTTaGGTATGGTGGATCACTGTG +
Preference number: 2 (lower is better)
Translates to: GNLSSAGMQRAGCGEREGIFGCT*VWWITV
Trigger: CACAGTGATCCACCATACTCAAGTGCAGCCAAAGAT...TCCTTCTCGCTCTCCGCATCCCGCTCTCTGCATCCCAGCTGAGCTTAGGTTGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR-3UTR GCA 90 bp TGGGCTTTTGAAAACCTCAAAGCCCACTTCCAGTGGCACATTTCCTCCACAAGGCCAGGGCCTGCCTTCTaGTGCCCATGCTTAGAGGCG +
Preference number: 2 (lower is better)
Translates to: WAFENLKAHFQWHISSTRPGPAF*CPCLEA
Trigger: CGCCTCTAAGCATGGGCAGCAGAAGGCAGGCCCTGG...CCTTGTGGAGGAAATGTGCCACTGGAAGTGGGCTTTGAGGTTTTCAAAAGCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR-3UTR GCA 90 bp GGCTCCAAGCCTTCTGGAAACTCCGCCCCTACTGGAGAGGAGAGGCTCAGAGAGCCTAGAGATTTCCCCTaGATATTGCTAACCCCAGTC +
Preference number: 2 (lower is better)
Translates to: GSKPSGNSAPTGEERLREPRDFP*ILLTPV
Trigger: GACTGGGGTTAGCAATATGCAGGGGAAATCTCTAGG...CTCTCTGAGCCTCTCCTCTCCAGTAGGGGCGGAGTTTCCAGAAGGCTTGGAGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
3UTR-3UTR GCA 90 bp TGGGGGCAGGTCACTTTCCAGAGCTGGAGGGCTGCTCTGTGTTTGTGTGGAGTGGTTGACACCTCATGGTaGCCTCTGGTATTTGAGTGG +
Preference number: 2 (lower is better)
Translates to: WGQVTFQSWRAALCLCGVVDTSW*PLVFEW
Trigger: CCACTCAAATACCAGAGGGCACCATGAGGTGTCAAC...CACTCCACACAAACACAGAGCAGCCCTCCAGCTCTGGAAAGTGACCTGCCCCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
3UTR-3UTR CCA 90 bp GCACTGGTCAGACCCTATGGGACCTTCCAGATGAGGAGACTGAAGCTCACAGGAAAACTCCGCCCCTACTaGAGAGGAGAGGCTCAGAGA +
Preference number: 2 (lower is better)
Translates to: ALVRPYGTFQMRRLKLTGKLRPY*RGEAQR
Trigger: TCTCTGAGCCTCTCCTCTCCAGTAGGGGCGGAGTTT...TCCTGTGAGCTTCAGTCTCCTCATCTGGAAGGTCCCATAGGGTCTGACCAGTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
3UTR CAA 90 bp CTCAGAGGGGTAGTGGGGCAAAGTGTTGTCCCTGAGTGTGGAGCCTaGGGCTTAATACCCACAAGCCCTCATTCCTCACTGTCTACCTCA +
Preference number: 2 (lower is better)
Translates to: LRGVVGQSVVPECGA*GLIPTSPHSSLSTS
Trigger: TGAGGTAGACAGTGAGGAATGAGGGCTTGTGGGTATTAAGCCCAAGGCTCCACACTCAGGGACAACACTTTGCCCCACTACCCCTCTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR-3UTR TCA 90 bp ATTGGAGTGTGTTTTGATGACTCTTCCCAGTTCCCTCCACATTCCCTCTCCAGGCAGGGCAGTGCCCATTaGGAGCACTGGTCAGACCCT +
Preference number: 2 (lower is better)
Translates to: IGVCFDDSSQFPPHSLSRQGSAH*EHWSDP
Trigger: AGGGTCTGACCAGTGCTCTCAATGGGCACTGCCCTG...CCTGGAGAGGGAATGTGGAGGGAACTGGGAAGAGTCATCAAAACACACTCCAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
3UTR-3UTR GCA 90 bp TGGGCTTTTGAAAACCTCAAAGCCCACTTCCAGTGGCACATTTCCTCCACAAGGAGAGAGAGAGGAGCCTaGCAGGGCCTGCCTTCTGCT +
Preference number: 2 (lower is better)
Translates to: WAFENLKAHFQWHISSTRRERGA*QGLPSA
Trigger: AGCAGAAGGCAGGCCCTGGCAGGCTCCTCTCTCTCT...CCTTGTGGAGGAAATGTGCCACTGGAAGTGGGCTTTGAGGTTTTCAAAAGCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR-3UTR CCA 90 bp AGCCCCAGCAGTAAAGAACCTCAGATAACAGAACTTCATCCCAAAAAGTGTGGCTGGGCAATGGAGTGTTaGTGGGTGGGGCGGGGTGGG +
Preference number: 2 (lower is better)
Translates to: SPSSKEPQITELHPKKCGWAMEC*WVGRGG
Trigger: CCCACCCCGCCCCACCCACCAACACTCCATTGCCCA...GCCACACTTTTTGGGATGAAGTTCTGTTATCTGAGGTTCTTTACTGCTGGGGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000230040.2
3UTR-3UTR TCA 90 bp AGTCTCCATACACGTGGCTGGGGGCAGGTCACTTTCCAGAGCTGGAGGGCTGCTGATGCAGACTTTAGCTaGAGGAATCCTTTCCTAATG +
Preference number: 2 (lower is better)
Translates to: SLHTRGWGQVTFQSWRAADADFS*RNPFLM
Trigger: CATTAGGAAAGGATTCCTTCAGCTAAAGTCTGCATC...AGCAGCCCTCCAGCTCTGGAAAGTGACCTGCCCCCAGCCACGTGTATGGAGACT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
3UTR-3UTR TCA 90 bp GCAGGCCACAGCAGCAGTCACTATGACCTGTATAACAGACTGCTCAGCAAGAGCAGTATCACCCAGGAATaGGCAGTGAAGACTGAGGAC +
Preference number: 2 (lower is better)
Translates to: AGHSSSHYDLYNRLLSKSSITQE*AVKTED
Trigger: GTCCTCAGTCTTCACTGCTCATTCCTGGGTGATACT...GCTCTTGCTGAGCAGTCTGTTATACAGGTCATAGTGACTGCTGCTGTGGCCTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR-3UTR GCA 90 bp CACTTCCAGTGGCACATTTCCTCCACAAGGCCACTCCACTCCTGTACGGTGACAACCTGTATAACAGACTaGTCAGCAAGAGCTGTGGAG +
Preference number: 2 (lower is better)
Translates to: HFQWHISSTRPLHSCTVTTCITD*SARAVE
Trigger: CTCCACAGCTCTTGCTGAGCAGTCTGTTATACAGGT...TGTCACCGTACAGGAGTGGAGTGGCCTTGTGGAGGAAATGTGCCACTGGAAGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR-3UTR GCA 90 bp TGTGTGGAGTGGCAGGTGTTGACACCTCATGGTGCCCTCTGGTATTTGAGTGGCTGGACTGTACTCTCTTaGCTAGAGATTTCCCCTGCA +
Preference number: 2 (lower is better)
Translates to: CVEWQVLTPHGALWYLSGWTVLS*LEISPA
Trigger: TGCAGGGGAAATCTCTAGGCAAGAGAGTACAGTCCA...GCCACTCAAATACCAGAGGGCACCATGAGGTGTCAACACCTGCCACTCCACACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
3UTR-3UTR CCA 90 bp GGAGAATTGGCCAAAACTCCTACATCTTTATCCACAGGCAGCAGGAAGAGAGCCTTGAGTGATGGAGCCTaGATCCAGCCTGGCTGGCTT +
Preference number: 2 (lower is better)
Translates to: GELAKTPTSLSTGSRKRALSDGA*IQPGWL
Trigger: AAGCCAGCCAGGCTGGATCCAGGCTCCATCACTCAA...GGCTCTCTTCCTGCTGCCTGTGGATAAAGATGTAGGAGTTTTGGCCAATTCTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR-3UTR CCA 90 bp AGAATAAATTGTGCCCAGCCAGAAGTTGGTATCTGCATGGGAAACCTGAAGCTTGCTCAGCAAGAGCTGTaGAGGGGCAGGCGCATTGCC +
Preference number: 2 (lower is better)
Translates to: RINCAQPEVGICMGNLKLAQQEL*RGRRIA
Trigger: GGCAATGCGCCTGCCCCTCCACAGCTCTTGCTGAGC...AAGCTTCAGGTTTCCCATGCAGATACCAACTTCTGGCTGGGCACAATTTATTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR-3UTR CCA 90 bp AGCCCCAGCAGTAAAGAACCTCAGATAACAGAACTTCATCCCAAAAAGTGTGGCGGGGTGGGGTGGCTCTaGAAGGGATTGGGTTCTCTG +
Preference number: 2 (lower is better)
Translates to: SPSSKEPQITELHPKKCGGVGWL*KGLGSL
Trigger: CAGAGAACCCAATCCCTTCCAGAGCCACCCCACCCC...GCCACACTTTTTGGGATGAAGTTCTGTTATCTGAGGTTCTTTACTGCTGGGGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000230040.2
3UTR-3UTR CCA 90 bp TTTCTGATGGAGATCCCTGGGATAGCGAGCACTCAGCCTGTGAGAGCTACAGATCACAGTGGGGCACAGTaGGGCAGTCTTCTCTTTCTT +
Preference number: 2 (lower is better)
Translates to: FLMEIPGIASTQPVRATDHSGAQ*GSLLFL
Trigger: AAGAAAGAGAAGACTGCCCCACTGTGCCCCACTGTG...ATCTGTAGCTCTCACAGGCTGAGTGCTCGCTATCCCAGGGATCTCCATCAGAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
3UTR CAA 90 bp CCAGGACTCATGGCTCTCTGTCTCTTTCCAATGAGACTCTGTCCCTaGACCTTGACTCCCAGAACAGCAAGGGATAGATGGGTTGGAGTA +
Preference number: 2 (lower is better)
Translates to: PGLMALCLFPMRLCP*TLTPRTARDRWVGV
Trigger: TACTCCAACCCATCTATCCCTTGCTGTTCTGGGAGTCAAGGTCAAGGGACAGAGTCTCATTGGAAAGAGACAGAGAGCCATGAGTCCTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
3UTR-3UTR TCA 90 bp GCACTGGTCAGACCCTATGGGACCTTCCAGATGAGGAGACTGAAGCTCACAGGACACGGCCTTGAAAAGTaGTTAGGAGTGATTGACACT +
Preference number: 2 (lower is better)
Translates to: ALVRPYGTFQMRRLKLTGHGLEK*LGVIDT
Trigger: AGTGTCAATCACTCCTAATCACTTTTCAAGGCCGTG...TCCTGTGAGCTTCAGTCTCCTCATCTGGAAGGTCCCATAGGGTCTGACCAGTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
3UTR-3UTR GCA 90 bp GCAGGCCACAGCAGCAGTCACTATGACCTGTATAACAGACTGCTCAGCAAGAGCCCAGGGAGGAAAGGTTaGTTGCATTCACTGATCTTC +
Preference number: 2 (lower is better)
Translates to: AGHSSSHYDLYNRLLSKSPGRKG*LHSLIF
Trigger: GAAGATCAGTGAATGCAAGCAACCTTTCCTCCCTGG...GCTCTTGCTGAGCAGTCTGTTATACAGGTCATAGTGACTGCTGCTGTGGCCTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR-3UTR CCA 90 bp CACTTCCAGTGGCACATTTCCTCCACAAGGCCACTCCACTCCTGTACGGTGACAAAGACCAGGGAAAGGTaGTTCAACGAATCCCAGTAT +
Preference number: 2 (lower is better)
Translates to: HFQWHISSTRPLHSCTVTKTRER*FNESQY
Trigger: ATACTGGGATTCGTTGAACCACCTTTCCCTGGTCTT...TGTCACCGTACAGGAGTGGAGTGGCCTTGTGGAGGAAATGTGCCACTGGAAGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR-3UTR CCA 90 bp TGTGTGGAGTGGCAGGTGTTGACACCTCATGGTGCCCTCTGGTATTTGAGTGGCAGCTGGGCAAGTACATaGATGCAGACTTTAGCTGAA +
Preference number: 2 (lower is better)
Translates to: CVEWQVLTPHGALWYLSGSWAST*MQTLAE
Trigger: TTCAGCTAAAGTCTGCATCCATGTACTTGCCCAGCT...GCCACTCAAATACCAGAGGGCACCATGAGGTGTCAACACCTGCCACTCCACACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
3UTR-3UTR CCA 90 bp AGTCCCAGGAACAAAAGTGTTTCCAGACAGTGTTCTCTGAGGGACAGCTCGGGCTCTAGAAACTGGAGCTaGGCAAGTACATGGATGCAG +
Preference number: 2 (lower is better)
Translates to: SPRNKSVSRQCSLRDSSGSRNWS*ASTWMQ
Trigger: CTGCATCCATGTACTTGCCCAGCTCCAGTTTCTAGA...GCCCGAGCTGTCCCTCAGAGAACACTGTCTGGAAACACTTTTGTTCCTGGGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
3UTR-3UTR CCA 90 bp ATTGGAGTGTGTTTTGATGACTCTTCCCAGTTCCCTCCACATTCCCTCTCCAGGTGGGAGAGCTGCAGTTaGTCTTCTCCTTCAGGTAGC +
Preference number: 2 (lower is better)
Translates to: IGVCFDDSSQFPPHSLSRWESCS*SSPSGS
Trigger: GCTACCTGAAGGAGAAGACCAACTGCAGCTCTCCCA...CCTGGAGAGGGAATGTGGAGGGAACTGGGAAGAGTCATCAAAACACACTCCAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
3UTR-3UTR CCA 90 bp ACTCATGGCTCTCTGTCTCTTTCCAATGAGACTCTGTCCCTTGACCTTGACTCCCAGTGTTTCAGGGCTTaGGAGAGCTGCAGTTGGTCT +
Preference number: 2 (lower is better)
Translates to: THGSLSLSNETLSLDLDSQCFRA*ESCSWS
Trigger: AGACCAACTGCAGCTCTCCCAAGCCCTGAAACACTG...GGAGTCAAGGTCAAGGGACAGAGTCTCATTGGAAAGAGACAGAGAGCCATGAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
3UTR-3UTR TCA 90 bp AATTGTGCCCAGCCAGAAGTTGGTATCTGCATGGGAAACCTGAAGCTTTTAAAGCCCAGGAATGAGCAGTaGAGACTGAGGACCAGGGAG +
Preference number: 2 (lower is better)
Translates to: NCAQPEVGICMGNLKLLKPRNEQ*RLRTRE
Trigger: CTCCCTGGTCCTCAGTCTTCACTGCTCATTCCTGGG...CTTTAAAAGCTTCAGGTTTCCCATGCAGATACCAACTTCTGGCTGGGCACAATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR-3UTR TCA 90 bp GCAGGCCACAGCAGCAGTCACTATGACCTGTATAACAGACTGCTCAGCAAGAGCTACAAAAATTTTGAGTaGTGGAGCCTGGATCCAGCC +
Preference number: 2 (lower is better)
Translates to: AGHSSSHYDLYNRLLSKSYKNFE*WSLDPA
Trigger: GGCTGGATCCAGGCTCCATCACTCAAAATTTTTGTA...GCTCTTGCTGAGCAGTCTGTTATACAGGTCATAGTGACTGCTGCTGTGGCCTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR-3UTR TCA 90 bp AGGGCTGCTCTGTGTTTGTGTGGAGTGGCAGGTGTTGACACCTCATGGTGCCCTGTGCTGCAGTTTATTTaGTCTGGTAAGAATCATGGA +
Preference number: 2 (lower is better)
Translates to: RAALCLCGVAGVDTSWCPVLQFI*SGKNHG
Trigger: TCCATGATTCTTACCAGATCAAATAAACTGCAGCAC...AGGGCACCATGAGGTGTCAACACCTGCCACTCCACACAAACACAGAGCAGCCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
3UTR-3UTR CCA 90 bp CACTCCTGTACGGTGACATCTGATCTTTTCAAATATCAACACTCTCTAGTGACCAGGCGAGAAGGGGGATaGGGCTCAGGAAAGCCACTC +
Preference number: 2 (lower is better)
Translates to: HSCTVTSDLFKYQHSLVTRREGG*GSGKPL
Trigger: GAGTGGCTTTCCTGAGCCCCATCCCCCTTCTCGCCT...GGTCACTAGAGAGTGTTGATATTTGAAAAGATCAGATGTCACCGTACAGGAGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR CAA 90 bp GAACAGACCCAAAGAGGCAGTCAGCTGTCCATCATTACAAAAATTTaGAGTGATGGAGCCTGGATCCAGCCTGGCTGGCTTTGCTACTCT +
Preference number: 2 (lower is better)
Translates to: EQTQRGSQLSIITKI*SDGAWIQPGWLCYS
Trigger: AGAGTAGCAAAGCCAGCCAGGCTGGATCCAGGCTCCATCACTCAAAATTTTTGTAATGATGGACAGCTGACTGCCTCTTTGGGTCTGTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR CAA 90 bp TCAGAGAGAGGAAGAGGCTTGGTTCTAGCTTTGGACTGTACTCTCTaGCCTAGAGATTTCCCCTGCATATTGCTAACCCCAGTCTTGGGA +
Preference number: 2 (lower is better)
Translates to: SERGRGLVLALDCTL*PRDFPCILLTPVLG
Trigger: TCCCAAGACTGGGGTTAGCAATATGCAGGGGAAATCTCTAGGCAAGAGAGTACAGTCCAAAGCTAGAACCAAGCCTCTTCCTCTCTCTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
3UTR-3UTR CCA 90 bp TGGGCTTTTGAAAACCTCAAAGCCCACTTCCAGTGGCACATTTCCTCCACAAGGCAGGAATCAGAGAAATaGCAACCTAAGCTCAGCTGG +
Preference number: 2 (lower is better)
Translates to: WAFENLKAHFQWHISSTRQESEK*QPKLSW
Trigger: CCAGCTGAGCTTAGGTTGCCATTTCTCTGATTCCTG...CCTTGTGGAGGAAATGTGCCACTGGAAGTGGGCTTTGAGGTTTTCAAAAGCCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR-3UTR TCA 90 bp GCACTGGTCAGACCCTATGGGACCTTCCAGATGAGGAGACTGAAGCTCACAGGATTGCTATTTTCTAGATaGAGAACCAGGTTTAGTGCA +
Preference number: 2 (lower is better)
Translates to: ALVRPYGTFQMRRLKLTGLLFSR*RTRFSA
Trigger: TGCACTAAACCTGGTTCTTCATCTAGAAAATAGCAA...TCCTGTGAGCTTCAGTCTCCTCATCTGGAAGGTCCCATAGGGTCTGACCAGTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
3UTR-3UTR GCA 90 bp CACTTTCTGAATATGAAAACATCCAGACTCGCCCACATCCACACTCTGTGTCATTCCATTCTCAGATGTTaGACTGTGTGGGGTTCCCGC +
Preference number: 2 (lower is better)
Translates to: HFLNMKTSRLAHIHTLCHSILRC*TVWGSR
Trigger: GCGGGAACCCCACACAGTGCAACATCTGAGAATGGA...ATGACACAGAGTGTGGATGTGGGCGAGTCTGGATGTTTTCATATTCAGAAAGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000230040.2
3UTR-3UTR CCA 90 bp TGGGCTTTTGAAAACCTCAAAGCCCACTTCCAGTGGCACATTTCCTCCACAAGGGCTTCTCTTACCATTTaGTACTTAGCTCAAGTGCCG +
Preference number: 2 (lower is better)
Translates to: WAFENLKAHFQWHISSTRASLTI*YLAQVP
Trigger: CGGCACTTGAGCTAAGTACCAAATGGTAAGAGAAGC...CCTTGTGGAGGAAATGTGCCACTGGAAGTGGGCTTTGAGGTTTTCAAAAGCCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR-3UTR GCA 90 bp AATTGTGCCCAGCCAGAAGTTGGTATCTGCATGGGAAACCTGAAGCTTTTAAAGCAGCCTGGCTGGCTTTaGTACTCTGCCTCTATAAAG +
Preference number: 2 (lower is better)
Translates to: NCAQPEVGICMGNLKLLKQPGWL*YSASIK
Trigger: CTTTATAGAGGCAGAGTAGCAAAGCCAGCCAGGCTG...CTTTAAAAGCTTCAGGTTTCCCATGCAGATACCAACTTCTGGCTGGGCACAATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR-3UTR GCA 90 bp CACTCCTGTACGGTGACATCTGATCTTTTCAAATATCAACACTCTCTAGTGACCGAGGGGCAGGCGCATTaGCTCCAAGCAGTTTCAAAA +
Preference number: 2 (lower is better)
Translates to: HSCTVTSDLFKYQHSLVTEGQAH*LQAVSK
Trigger: TTTTGAAACTGCTTGGAGGCAATGCGCCTGCCCCTC...GGTCACTAGAGAGTGTTGATATTTGAAAAGATCAGATGTCACCGTACAGGAGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR-3UTR CCA 90 bp CACTCCTGTACGGTGACATCTGATCTTTTCAAATATCAACACTCTCTAGTGACCTATGGGAGGGGCTGGTaGTATCTGAGTGGATGCAGA +
Preference number: 2 (lower is better)
Translates to: HSCTVTSDLFKYQHSLVTYGRGW*YLSGCR
Trigger: TCTGCATCCACTCAGATACCACCAGCCCCTCCCATA...GGTCACTAGAGAGTGTTGATATTTGAAAAGATCAGATGTCACCGTACAGGAGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR-3UTR TCA 90 bp AATTGTGCCCAGCCAGAAGTTGGTATCTGCATGGGAAACCTGAAGCTTTTAAAGGAAATGCTCACTTTCTaGAGGTCATCACCCTCTAGG +
Preference number: 2 (lower is better)
Translates to: NCAQPEVGICMGNLKLLKEMLTF*RSSPSR
Trigger: CCTAGAGGGTGATGACCTTCAGAAAGTGAGCATTTC...CTTTAAAAGCTTCAGGTTTCCCATGCAGATACCAACTTCTGGCTGGGCACAATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR-3UTR GCA 90 bp ATTGGAGTGTGTTTTGATGACTCTTCCCAGTTCCCTCCACATTCCCTCTCCAGGACCTGGCAAGTCTTGTaGCCATATTTTCTTCTGTTT +
Preference number: 2 (lower is better)
Translates to: IGVCFDDSSQFPPHSLSRTWQVL*PYFLLF
Trigger: AAACAGAAGAAAATATGGGCACAAGACTTGCCAGGT...CCTGGAGAGGGAATGTGGAGGGAACTGGGAAGAGTCATCAAAACACACTCCAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
3UTR-3UTR TCA 90 bp TTCAAACACAGTGTTCTCAGTTTGGTGAGACAAAGCGACAGGAATCAGAGAAATCTGATCTTCTGTTGGTaGCTGACCATACAGCAGGTG +
Preference number: 2 (lower is better)
Translates to: FKHSVLSLVRQSDRNQRNLIFCW*LTIQQV
Trigger: CACCTGCTGTATGGTCAGTCACCAACAGAAGATCAG...ATTTCTCTGATTCCTGTCGCTTTGTCTCACCAAACTGAGAACACTGTGTTTGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR-3UTR GCA 90 bp ATTGGAGTGTGTTTTGATGACTCTTCCCAGTTCCCTCCACATTCCCTCTCCAGGAGATGGGTTGGAGTATaGTACTTGGTATATTCTCTA +
Preference number: 2 (lower is better)
Translates to: IGVCFDDSSQFPPHSLSRRWVGV*YLVYSL
Trigger: TAGAGAATATACCAAGTAGCATACTCCAACCCATCT...CCTGGAGAGGGAATGTGGAGGGAACTGGGAAGAGTCATCAAAACACACTCCAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
3UTR-3UTR CCA 90 bp CAAATATCAACACTCTCTAGTGACCAAGCATACAAATATGTGAGCCTGTGGGGGTTGTTTGCATTTTTATaGGGAATGGGGCTGGGCTTA +
Preference number: 2 (lower is better)
Translates to: QISTLSSDQAYKYVSLWGLFAFL*GMGLGL
Trigger: TAAGCCCAGCCCCATTCCCCATAAAAATGCAAACAA...CCCCCACAGGCTCACATATTTGTATGCTTGGTCACTAGAGAGTGTTGATATTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR-3UTR TCA 90 bp TCCACACTCTGTGTCATCATTCAGTCTATAAACCCATGGTTGTTAGGGACATACACTTATAGTATGGAGTaGATCAGTTGTGATGGCCCA +
Preference number: 2 (lower is better)
Translates to: STLCVIIQSINPWLLGTYTYSME*ISCDGP
Trigger: TGGGCCATCACAACTGATTCACTCCATACTATAAGT...GTATGTCCCTAACAACCATGGGTTTATAGACTGAATGATGACACAGAGTGTGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230040.2
3UTR-3UTR GCA 90 bp ATCATGTCACAGGCATTTATAGGACAAGGTTCAAGTTCCATGGTATATTTAGTTCCATATGTTTCTCACTaGAGCAGGCCACAGCAGCAG +
Preference number: 2 (lower is better)
Translates to: IMSQAFIGQGSSSMVYLVPYVSH*SRPQQQ
Trigger: CTGCTGCTGTGGCCTGCTGCAGTGAGAAACATATGG...AACTAAATATACCATGGAACTTGAACCTTGTCCTATAAATGCCTGTGACATGAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR-3UTR CCA 90 bp CACATCCACACTCTGTGTCATCATTCAGTCTATAAACCCATGGTTGTTAGGGACAAGTCATTAAGTAGTTaGCACCCTGACCCACTTAAA +
Preference number: 2 (lower is better)
Translates to: HIHTLCHHSVYKPMVVRDKSLSS*HPDPLK
Trigger: TTTAAGTGGGTCAGGGTGCCAACTACTTAATGACTT...GTCCCTAACAACCATGGGTTTATAGACTGAATGATGACACAGAGTGTGGATGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230040.2
3UTR-3UTR TCA 90 bp CACTCCTGTACGGTGACATCTGATCTTTTCAAATATCAACACTCTCTAGTGACCTGTTGGTTCTCATGTTaGATGCTGGTTTTCTGGAAA +
Preference number: 2 (lower is better)
Translates to: HSCTVTSDLFKYQHSLVTCWFSC*MLVFWK
Trigger: TTTCCAGAAAACCAGCATTCAACATGAGAACCAACA...GGTCACTAGAGAGTGTTGATATTTGAAAAGATCAGATGTCACCGTACAGGAGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR-3UTR TCA 90 bp ACATCCACACTCTGTGTCATCATTCAGTCTATAAACCCATGGTTGTTAGGGACAGGACATATTTTCCTTTaGGAAGAGTACAGTTCACTG +
Preference number: 2 (lower is better)
Translates to: TSTLCVIIQSINPWLLGTGHIFL*EEYSSL
Trigger: CAGTGAACTGTACTCTTCTCAAAGGAAAATATGTCC...TGTCCCTAACAACCATGGGTTTATAGACTGAATGATGACACAGAGTGTGGATGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230040.2
3UTR-3UTR GCA 90 bp AATTGTGCCCAGCCAGAAGTTGGTATCTGCATGGGAAACCTGAAGCTTTTAAAGGGTTCTCATGTTGAATaGTGGTTTTCTGGAAATATC +
Preference number: 2 (lower is better)
Translates to: NCAQPEVGICMGNLKLLKGSHVE*WFSGNI
Trigger: GATATTTCCAGAAAACCAGCATTCAACATGAGAACC...CTTTAAAAGCTTCAGGTTTCCCATGCAGATACCAACTTCTGGCTGGGCACAATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR-3UTR TCA 90 bp CTTCCTTCTGTGTCTCTAGTTTTAGGTGATCAGGCTTCTTGGACCATAATAGAATCATTACAAAAATTTTaGGTGATGGAGCCTGGATCC +
Preference number: 2 (lower is better)
Translates to: LPSVSLVLGDQASWTIIESLQKF*VMEPGS
Trigger: GGATCCAGGCTCCATCACTCAAAATTTTTGTAATGA...TTCTATTATGGTCCAAGAAGCCTGATCACCTAAAACTAGAGACACAGAAGGAAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR-3UTR TCA 90 bp CTCTGTGTCATCATTCAGTCTATAAACCCATGGTTGTTAGGGACATACACTTTCAGTAAGTTTGAATGGTaGGTAAATCGTCAGGAGAGA +
Preference number: 2 (lower is better)
Translates to: LCVIIQSINPWLLGTYTFSKFEW*VNRQER
Trigger: TCTCTCCTGACGATTTACTCACCATTCAAACTTACT...GAAAGTGTATGTCCCTAACAACCATGGGTTTATAGACTGAATGATGACACAGAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230040.2
3UTR CAA 90 bp TTGGATAAGGTTTCTAAAAACTTATTCAAACACAGTGTTCTCAGTTaGGTGAGACAAAGCGACAGGAATCAGAGAAATGGCAACCTAAGC +
Preference number: 2 (lower is better)
Translates to: LDKVSKNLFKHSVLS*VRQSDRNQRNGNLS
Trigger: GCTTAGGTTGCCATTTCTCTGATTCCTGTCGCTTTGTCTCACCAAACTGAGAACACTGTGTTTGAATAAGTTTTTAGAAACCTTATCCAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR-3UTR CCA 90 bp CACTCCTGTACGGTGACATCTGATCTTTTCAAATATCAACACTCTCTAGTGACCTACCAGAGATTTTTATaGAAACTAGCAGCAGCAATA +
Preference number: 2 (lower is better)
Translates to: HSCTVTSDLFKYQHSLVTYQRFL*KLAAAI
Trigger: TATTGCTGCTGCTAGTTTCCATAAAAATCTCTGGTA...GGTCACTAGAGAGTGTTGATATTTGAAAAGATCAGATGTCACCGTACAGGAGTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR-3UTR CCA 90 bp CTTCCTTCTGTGTCTCTAGTTTTAGGTGATCAGGCTTCTTGGACCATAATAGAAACAGAAATTCAGGGTTaGGCTTCTGTTTGTTTAAAA +
Preference number: 2 (lower is better)
Translates to: LPSVSLVLGDQASWTIIETEIQG*ASVCLK
Trigger: TTTTAAACAAACAGAAGCCCAACCCTGAATTTCTGT...TTCTATTATGGTCCAAGAAGCCTGATCACCTAAAACTAGAGACACAGAAGGAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR GCA 72 bp AGAGAGAGAGAGAGGAGCCTGCCAGGGCCTGCCTTCTaGTGCCCATGCTTAGAGGCGAGAAGGGGGATGGGG +
Preference number: 3 (lower is better)
Translates to: RERERSLPGPAF*CPCLEARRGMG
Trigger: CCCCATCCCCCTTCTCGCCTCTAAGCATGGGCAGCAGAAGGCAGGCCCTGGCAGGCTCCTCTCTCTCTCTCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR-3UTR CAA 90 bp GGCTCCAAGCCTTCTGGAAACTCCGCCCCTACTGGAGAGGAGAGGCTCAGAGAGCCCCAGTCTTGGGAGTaGGGGCTATCTCAGGAGCAT +
Preference number: 3 (lower is better)
Translates to: GSKPSGNSAPTGEERLREPQSWE*GLSQEH
Trigger: ATGCTCCTGAGATAGCCCCAACTCCCAAGACTGGGG...CTCTCTGAGCCTCTCCTCTCCAGTAGGGGCGGAGTTTCCAGAAGGCTTGGAGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
3UTR CCA 72 bp GAGAGGCTCCAAGCCTTCTGGAAACTCCGCCCCTACTaGAGAGGAGAGGCTCAGAGAGAGGAAGAGGCTTGG +
Preference number: 3 (lower is better)
Translates to: ERLQAFWKLRPY*RGEAQREEEAW
Trigger: CCAAGCCTCTTCCTCTCTCTGAGCCTCTCCTCTCCAGTAGGGGCGGAGTTTCCAGAAGGCTTGGAGCCTCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
3UTR TCA 72 bp CATGCTCAGAGGGGTAGTGGGGCAAAGTGTTGTCCCTaGGTGTGGAGCCTTGGGCTTAATACCCACAAGCCC +
Preference number: 3 (lower is better)
Translates to: HAQRGSGAKCCP*VWSLGLNTHKP
Trigger: GGGCTTGTGGGTATTAAGCCCAAGGCTCCACACTCAGGGACAACACTTTGCCCCACTACCCCTCTGAGCATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR GCA 72 bp GCCACAGCAGCAGTCACTATGACCTGTATAACAGACTaGTCAGCAAGAGCTGTGGAGGGGCAGGCGCATTGC +
Preference number: 3 (lower is better)
Translates to: ATAAVTMTCITD*SARAVEGQAHC
Trigger: GCAATGCGCCTGCCCCTCCACAGCTCTTGCTGAGCAGTCTGTTATACAGGTCATAGTGACTGCTGCTGTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR CCA 72 bp CGACAGGAATCAGAGAAATGGCAACCTAAGCTCAGCTaGGATGCAGAGAGCGGGATGCGGAGAGCGAGAAGG +
Preference number: 3 (lower is better)
Translates to: RQESEKWQPKLS*DAESGMRRARR
Trigger: CCTTCTCGCTCTCCGCATCCCGCTCTCTGCATCCCAGCTGAGCTTAGGTTGCCATTTCTCTGATTCCTGTCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR CCA 72 bp GTATTTGAGTGGCACATGGGCCCGATGTGTTCGGAGTaGACAGCAGTGTTTCAGGGCTTGGGAGAGCTGCAG +
Preference number: 3 (lower is better)
Translates to: VFEWHMGPMCSE*TAVFQGLGELQ
Trigger: CTGCAGCTCTCCCAAGCCCTGAAACACTGCTGTCCACTCCGAACACATCGGGCCCATGTGCCACTCAAATAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
3UTR CCA 72 bp GGTGTTGACACCTCATGGTGCCCTCTGGTATTTGAGTaGCACATGGGCCCGATGTGTTCGGAGTGGACAGCA +
Preference number: 3 (lower is better)
Translates to: GVDTSWCPLVFE*HMGPMCSEWTA
Trigger: TGCTGTCCACTCCGAACACATCGGGCCCATGTGCCACTCAAATACCAGAGGGCACCATGAGGTGTCAACACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
3UTR CCA 72 bp TCCAGAGCTGGAGGGCTGCTCTGTGTTTGTGTGGAGTaGCAGGTGTTGACACCTCATGGTGCCCTCTGGTAT +
Preference number: 3 (lower is better)
Translates to: SRAGGLLCVCVE*QVLTPHGALWY
Trigger: ATACCAGAGGGCACCATGAGGTGTCAACACCTGCCACTCCACACAAACACAGAGCAGCCCTCCAGCTCTGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
3UTR CCA 72 bp AGGGCAGTGCCCATTGAGAGCACTGGTCAGACCCTATaGGACCTTCCAGATGAGGAGACTGAAGCTCACAGG +
Preference number: 3 (lower is better)
Translates to: RAVPIESTGQTL*DLPDEETEAHR
Trigger: CCTGTGAGCTTCAGTCTCCTCATCTGGAAGGTCCCATAGGGTCTGACCAGTGCTCTCAATGGGCACTGCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
3UTR GCA 72 bp TGTTTGTGTGGAGTGGCAGGTGTTGACACCTCATGGTaGCCTCTGGTATTTGAGTGGCACATGGGCCCGATG +
Preference number: 3 (lower is better)
Translates to: CLCGVAGVDTSW*PLVFEWHMGPM
Trigger: CATCGGGCCCATGTGCCACTCAAATACCAGAGGGCACCATGAGGTGTCAACACCTGCCACTCCACACAAACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
3UTR CCA 72 bp CGATGTGTTCGGAGTGGACAGCAGTGTTTCAGGGCTTaGGAGAGCTGCAGTTGGTCTTCTCCTTCAGGTAGC +
Preference number: 3 (lower is better)
Translates to: RCVRSGQQCFRA*ESCSWSSPSGS
Trigger: GCTACCTGAAGGAGAAGACCAACTGCAGCTCTCCCAAGCCCTGAAACACTGCTGTCCACTCCGAACACATCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
3UTR-3UTR CAA 90 bp CCAGGACTCATGGCTCTCTGTCTCTTTCCAATGAGACTCTGTCCCTTGACCTTGGCAGTGTTTCAGGGCTaGGGAGAGCTGCAGTTGGTC +
Preference number: 3 (lower is better)
Translates to: PGLMALCLFPMRLCPLTLAVFQG*GELQLV
Trigger: GACCAACTGCAGCTCTCCCAAGCCCTGAAACACTGC...CAAGGTCAAGGGACAGAGTCTCATTGGAAAGAGACAGAGAGCCATGAGTCCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
3UTR GCA 72 bp TGGAGCCTGGATCCAGCCTGGCTGGCTTTGCTACTCTaGCTCTATAAAGACCAGGGAAAGGTGGTTCAACGA +
Preference number: 3 (lower is better)
Translates to: WSLDPAWLALLL*LYKDQGKVVQR
Trigger: TCGTTGAACCACCTTTCCCTGGTCTTTATAGAGGCAGAGTAGCAAAGCCAGCCAGGCTGGATCCAGGCTCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR GCA 72 bp TTGAGTGATGGAGCCTGGATCCAGCCTGGCTGGCTTTaGTACTCTGCCTCTATAAAGACCAGGGAAAGGTGG +
Preference number: 3 (lower is better)
Translates to: LSDGAWIQPGWL*YSASIKTRERW
Trigger: CCACCTTTCCCTGGTCTTTATAGAGGCAGAGTAGCAAAGCCAGCCAGGCTGGATCCAGGCTCCATCACTCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR CCA 72 bp TCTTCTCTTTCTTCAAGTAGTCTCCATACACGTGGCTaGGGGCAGGTCACTTTCCAGAGCTGGAGGGCTGCT +
Preference number: 3 (lower is better)
Translates to: SSLSSSSLHTRG*GQVTFQSWRAA
Trigger: AGCAGCCCTCCAGCTCTGGAAAGTGACCTGCCCCCAGCCACGTGTATGGAGACTACTTGAAGAAAGAGAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
3UTR-3UTR CAA 90 bp TGTGTGGAGTGGCAGGTGTTGACACCTCATGGTGCCCTCTGGTATTTGAGTGGCGGCTTGGTTCTAGCTTaGGACTGTACTCTCTTGCCT +
Preference number: 3 (lower is better)
Translates to: CVEWQVLTPHGALWYLSGGLVLA*DCTLLP
Trigger: AGGCAAGAGAGTACAGTCCAAAGCTAGAACCAAGCC...GCCACTCAAATACCAGAGGGCACCATGAGGTGTCAACACCTGCCACTCCACACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
3UTR-3UTR CAA 90 bp GATATTGGAGTGTGTTTTGATGACTCTTCCCAGTTCCCTCCACATTCCCTCTCCGTGGAGTGGCAGGTGTaGACACCTCATGGTGCCCTC +
Preference number: 3 (lower is better)
Translates to: DIGVCFDDSSQFPPHSLSVEWQV*TPHGAL
Trigger: GAGGGCACCATGAGGTGTCAACACCTGCCACTCCAC...GGAGAGGGAATGTGGAGGGAACTGGGAAGAGTCATCAAAACACACTCCAATATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
3UTR-3UTR CAA 90 bp GATATTGGAGTGTGTTTTGATGACTCTTCCCAGTTCCCTCCACATTCCCTCTCCTCAGGGCAGTGCCCATaGAGAGCACTGGTCAGACCC +
Preference number: 3 (lower is better)
Translates to: DIGVCFDDSSQFPPHSLSSGQCP*RALVRP
Trigger: GGGTCTGACCAGTGCTCTCAATGGGCACTGCCCTGA...GGAGAGGGAATGTGGAGGGAACTGGGAAGAGTCATCAAAACACACTCCAATATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
3UTR TCA 72 bp GTGTGTCACAGTTCCACCAGGAATGTCTGGAAGCCATaGCCCATATGTTTCTCACTGCAGCAGGCCACAGCA +
Preference number: 3 (lower is better)
Translates to: VCHSSTRNVWKP*PICFSLQQATA
Trigger: TGCTGTGGCCTGCTGCAGTGAGAAACATATGGGTCATGGCTTCCAGACATTCCTGGTGGAACTGTGACACAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR CCA 72 bp CCCCCATTTCCTCTCAGCCTCGCTTCTCTTACCATTTaGTACTTAGCTCAAGTGCCGAACGACATTGCTGGC +
Preference number: 3 (lower is better)
Translates to: PPFPLSLASLTI*YLAQVPNDIAG
Trigger: GCCAGCAATGTCGTTCGGCACTTGAGCTAAGTACCAAATGGTAAGAGAAGCGAGGCTGAGAGGAAATGGGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR-3UTR CAA 90 bp CACTTCCAGTGGCACATTTCCTCCACAAGGCCACTCCACTCCTGTACGGTGACATTTCCTTGGCCTCACTaGCAGAAATGCTCACTTTCT +
Preference number: 3 (lower is better)
Translates to: HFQWHISSTRPLHSCTVTFPWPH*QKCSLS
Trigger: AGAAAGTGAGCATTTCTGCAAGTGAGGCCAAGGAAA...TGTCACCGTACAGGAGTGGAGTGGCCTTGTGGAGGAAATGTGCCACTGGAAGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR-3UTR CAA 90 bp ATTGGAGTGTGTTTTGATGACTCTTCCCAGTTCCCTCCACATTCCCTCTCCAGGTTGCTAACCCCAGTCTaGGGAGTTGGGGCTATCTCA +
Preference number: 3 (lower is better)
Translates to: IGVCFDDSSQFPPHSLSRLLTPV*GVGAIS
Trigger: TGAGATAGCCCCAACTCCCAAGACTGGGGTTAGCAA...CCTGGAGAGGGAATGTGGAGGGAACTGGGAAGAGTCATCAAAACACACTCCAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
3UTR-3UTR CAA 90 bp GAACCCAGGACTCATGGCTCTCTGTCTCTTTCCAATGAGACTCTGTCCCTTGACGAGAGAGGAAGAGGCTaGGTTCTAGCTTTGGACTGT +
Preference number: 3 (lower is better)
Translates to: EPRTHGSLSLSNETLSLDERGRG*VLALDC
Trigger: ACAGTCCAAAGCTAGAACCAAGCCTCTTCCTCTCTC...GTCAAGGGACAGAGTCTCATTGGAAAGAGACAGAGAGCCATGAGTCCTGGGTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
3UTR TCA 72 bp GAATCCCAGTATCACCCAGGAATGAGCAGTGAAGACTaGGGACCAGGGAGGAAAGGTTGCTTGCATTCACTG +
Preference number: 3 (lower is better)
Translates to: ESQYHPGMSSED*GPGRKGCLHSL
Trigger: CAGTGAATGCAAGCAACCTTTCCTCCCTGGTCCTCAGTCTTCACTGCTCATTCCTGGGTGATACTGGGATTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR GCA 72 bp TTCCAGACAGTGTTCTCTGAGGGACAGCTCGGGCTCTaGTCTTGGTCCCCCAAACCTGAATTGCTATTTTCT +
Preference number: 3 (lower is better)
Translates to: FQTVFSEGQLGL*SWSPKPELLFS
Trigger: AGAAAATAGCAATTCAGGTTTGGGGGACCAAGAGCAGAGCCCGAGCTGTCCCTCAGAGAACACTGTCTGGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
3UTR CCA 72 bp GTTTGGGCTTTTGAAAACCTCAAAGCCCACTTCCAGTaGCACATTTCCTCCACAAGGCCACTCCACTCCTGT +
Preference number: 3 (lower is better)
Translates to: VWAFENLKAHFQ*HISSTRPLHSC
Trigger: ACAGGAGTGGAGTGGCCTTGTGGAGGAAATGTGCCACTGGAAGTGGGCTTTGAGGTTTTCAAAAGCCCAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR CCA 72 bp TTTCCCCTGCATATTGCTAACCCCAGTCTTGGGAGTTaGGGCTATCTCAGGAGCATGAGTGTGCTGCAGTTT +
Preference number: 3 (lower is better)
Translates to: FPLHIANPSLGS*GYLRSMSVLQF
Trigger: AAACTGCAGCACACTCATGCTCCTGAGATAGCCCCAACTCCCAAGACTGGGGTTAGCAATATGCAGGGGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
3UTR-3UTR CAA 90 bp ACTCATGGCTCTCTGTCTCTTTCCAATGAGACTCTGTCCCTTGACCTTGACTCCTTGGACTGTACTCTCTaGCCTAGAGATTTCCCCTGC +
Preference number: 3 (lower is better)
Translates to: THGSLSLSNETLSLDLDSLDCTL*PRDFPC
Trigger: GCAGGGGAAATCTCTAGGCAAGAGAGTACAGTCCAA...GGAGTCAAGGTCAAGGGACAGAGTCTCATTGGAAAGAGACAGAGAGCCATGAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
3UTR TCA 72 bp AGGAAAGGTTGCTTGCATTCACTGATCTTCTGTTGGTaGCTGACCATACAGCAGGTGTTGGGCTGGGATTCG +
Preference number: 3 (lower is better)
Translates to: RKGCLHSLIFCW*LTIQQVLGWDS
Trigger: CGAATCCCAGCCCAACACCTGCTGTATGGTCAGTCACCAACAGAAGATCAGTGAATGCAAGCAACCTTTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR TCA 72 bp AAAGGTGGTTCAACGAATCCCAGTATCACCCAGGAATaGGCAGTGAAGACTGAGGACCAGGGAGGAAAGGTT +
Preference number: 3 (lower is better)
Translates to: KGGSTNPSITQE*AVKTEDQGGKV
Trigger: AACCTTTCCTCCCTGGTCCTCAGTCTTCACTGCTCATTCCTGGGTGATACTGGGATTCGTTGAACCACCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR CCA 72 bp GGCAAGAGCATGGTGGCATGCAGGCAAACATGGTGCTaGAGAATTGGCCAAAACTCCTACATCTTTATCCAC +
Preference number: 3 (lower is better)
Translates to: GKSMVACRQTWC*RIGQNSYIFIH
Trigger: GTGGATAAAGATGTAGGAGTTTTGGCCAATTCTCCAGCACCATGTTTGCCTGCATGCCACCATGCTCTTGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR-3UTR CAA 90 bp CACTTCCAGTGGCACATTTCCTCCACAAGGCCACTCCACTCCTGTACGGTGACAATGTTGGTTCTCATGTaGAATGCTGGTTTTCTGGAA +
Preference number: 3 (lower is better)
Translates to: HFQWHISSTRPLHSCTVTMLVLM*NAGFLE
Trigger: TTCCAGAAAACCAGCATTCAACATGAGAACCAACAT...TGTCACCGTACAGGAGTGGAGTGGCCTTGTGGAGGAAATGTGCCACTGGAAGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR TCA 72 bp AGGCAGTCAGCTGTCCATCATTACAAAAATTTTGAGTaGTGGAGCCTGGATCCAGCCTGGCTGGCTTTGCTA +
Preference number: 3 (lower is better)
Translates to: RQSAVHHYKNFE*WSLDPAWLALL
Trigger: TAGCAAAGCCAGCCAGGCTGGATCCAGGCTCCATCACTCAAAATTTTTGTAATGATGGACAGCTGACTGCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR TCA 72 bp GTTTCCTTGGCCTCACTTGCAGAAATGCTCACTTTCTaGAGGTCATCACCCTCTAGGCTGATTCTTGGCGTT +
Preference number: 3 (lower is better)
Translates to: VSLASLAEMLTF*RSSPSRLILGV
Trigger: AACGCCAAGAATCAGCCTAGAGGGTGATGACCTTCAGAAAGTGAGCATTTCTGCAAGTGAGGCCAAGGAAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR CCA 72 bp CTGTCCATCATTACAAAAATTTTGAGTGATGGAGCCTaGATCCAGCCTGGCTGGCTTTGCTACTCTGCCTCT +
Preference number: 3 (lower is better)
Translates to: LSIITKILSDGA*IQPGWLCYSAS
Trigger: AGAGGCAGAGTAGCAAAGCCAGCCAGGCTGGATCCAGGCTCCATCACTCAAAATTTTTGTAATGATGGACAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR-3UTR CAA 90 bp AATTGTGCCCAGCCAGAAGTTGGTATCTGCATGGGAAACCTGAAGCTTTTAAAGCCAGCCTGGCTGGCTTaGCTACTCTGCCTCTATAAA +
Preference number: 3 (lower is better)
Translates to: NCAQPEVGICMGNLKLLKPAWLA*LLCLYK
Trigger: TTTATAGAGGCAGAGTAGCAAAGCCAGCCAGGCTGG...CTTTAAAAGCTTCAGGTTTCCCATGCAGATACCAACTTCTGGCTGGGCACAATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR-3UTR CAA 90 bp CACTTTCTGAATATGAAAACATCCAGACTCGCCCACATCCACACTCTGTGTCATATCCATTCTCAGATGTaGCACTGTGTGGGGTTCCCG +
Preference number: 3 (lower is better)
Translates to: HFLNMKTSRLAHIHTLCHIHSQM*HCVGFP
Trigger: CGGGAACCCCACACAGTGCAACATCTGAGAATGGAT...ATGACACAGAGTGTGGATGTGGGCGAGTCTGGATGTTTTCATATTCAGAAAGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000230040.2
3UTR-3UTR CAA 90 bp GGAGAATTGGCCAAAACTCCTACATCTTTATCCACAGGCAGCAGGAAGAGAGCCATAAGGTCTGACCACTaGCTTCTCATGGTTGAAGAA +
Preference number: 3 (lower is better)
Translates to: GELAKTPTSLSTGSRKRAIRSDH*LLMVEE
Trigger: TTCTTCAACCATGAGAAGCAAGTGGTCAGACCTTAT...GGCTCTCTTCCTGCTGCCTGTGGATAAAGATGTAGGAGTTTTGGCCAATTCTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR TCA 72 bp AAAGAGGCAGTCAGCTGTCCATCATTACAAAAATTTTaGGTGATGGAGCCTGGATCCAGCCTGGCTGGCTTT +
Preference number: 3 (lower is better)
Translates to: KEAVSCPSLQKF*VMEPGSSLAGF
Trigger: AAAGCCAGCCAGGCTGGATCCAGGCTCCATCACTCAAAATTTTTGTAATGATGGACAGCTGACTGCCTCTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR TCA 72 bp TCTCTTCGAATAGTAGTCAAGCGTGTAGGAATAGAGTaGCATGCTCAGAGGGGTAGTGGGGCAAAGTGTTGT +
Preference number: 3 (lower is better)
Translates to: SLRIVVKRVGIE*HAQRGSGAKCC
Trigger: ACAACACTTTGCCCCACTACCCCTCTGAGCATGTCACTCTATTCCTACACGCTTGACTACTATTCGAAGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR GCA 72 bp ACTCCCAGAACAGCAAGGGATAGATGGGTTGGAGTATaGTACTTGGTATATTCTCTACTGAGCTCAGGCTCT +
Preference number: 3 (lower is better)
Translates to: TPRTARDRWVGV*YLVYSLLSSGS
Trigger: AGAGCCTGAGCTCAGTAGAGAATATACCAAGTAGCATACTCCAACCCATCTATCCCTTGCTGTTCTGGGAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
3UTR CCA 72 bp TATCATGGCAAGAGCATGGTGGCATGCAGGCAAACATaGTGCTGGAGAATTGGCCAAAACTCCTACATCTTT +
Preference number: 3 (lower is better)
Translates to: YHGKSMVACRQT*CWRIGQNSYIF
Trigger: AAAGATGTAGGAGTTTTGGCCAATTCTCCAGCACCATGTTTGCCTGCATGCCACCATGCTCTTGCCATGATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR-3UTR CAA 90 bp AGAATAAATTGTGCCCAGCCAGAAGTTGGTATCTGCATGGGAAACCTGAAGCTTCATGAGAGACAAGGGTaGATAAGACTTCACAACCCC +
Preference number: 3 (lower is better)
Translates to: RINCAQPEVGICMGNLKLHERQG*IRLHNP
Trigger: GGGGTTGTGAAGTCTTATCAACCCTTGTCTCTCATG...AAGCTTCAGGTTTCCCATGCAGATACCAACTTCTGGCTGGGCACAATTTATTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR TCA 72 bp CTCCACAAGGCCACTCCACTCCTGTACGGTGACATCTaGTCTTTTCAAATATCAACACTCTCTAGTGACCAA +
Preference number: 3 (lower is better)
Translates to: LHKATPLLYGDI*SFQISTLSSDQ
Trigger: TTGGTCACTAGAGAGTGTTGATATTTGAAAAGATCAGATGTCACCGTACAGGAGTGGAGTGGCCTTGTGGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR TCA 72 bp GGCTATCTCAGGAGCATGAGTGTGCTGCAGTTTATTTaGTCTGGTAAGAATCATGGACTATGCTGTTGGCAG +
Preference number: 3 (lower is better)
Translates to: GYLRSMSVLQFI*SGKNHGLCCWQ
Trigger: CTGCCAACAGCATAGTCCATGATTCTTACCAGATCAAATAAACTGCAGCACACTCATGCTCCTGAGATAGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
3UTR CCA 72 bp CTATCAAGAGTTTATAAGGGACCTCCACCTGCCTCGTaGACACAGACGCCTTTTGCTAAGTCACAGTTTTTA +
Preference number: 3 (lower is better)
Translates to: LSRVYKGPPPAS*TQTPFAKSQFL
Trigger: TAAAAACTGTGACTTAGCAAAAGGCGTCTGTGTCCACGAGGCAGGTGGAGGTCCCTTATAAACTCTTGATAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR TCA 72 bp TATCAACACTCTCTAGTGACCAAGCATACAAATATGTaGGCCTGTGGGGGCCATTCTTACTCAAACCATGAG +
Preference number: 3 (lower is better)
Translates to: YQHSLVTKHTNM*ACGGHSYSNHE
Trigger: CTCATGGTTTGAGTAAGAATGGCCCCCACAGGCTCACATATTTGTATGCTTGGTCACTAGAGAGTGTTGATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR TCA 72 bp TTGGTTATCCATAGATTTATTTCCACTGTAGACCCCTaGCAAGAGAAACGGAGTGCAGAGGCCCTTATAGAG +
Preference number: 3 (lower is better)
Translates to: LVIHRFISTVDP*QEKRSAEALIE
Trigger: CTCTATAAGGGCCTCTGCACTCCGTTTCTCTTGTCAGGGGTCTACAGTGGAAATAAATCTATGGATAACCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
3UTR TCA 72 bp GCAGCAGCAATACAGGTCGAGGGTCAAAGTCTTCTATaGAGAACAATTCTCATACACAGAAATTCAGGGTTG +
Preference number: 3 (lower is better)
Translates to: AAAIQVEGQSLL*RTILIHRNSGL
Trigger: CAACCCTGAATTTCTGTGTATGAGAATTGTTCTTCATAGAAGACTTTGACCCTCGACCTGTATTGCTGCTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR CCA 72 bp TCTGGGTTGAGCATAGTCTCAAATATTAGAGTGACCTaGCAAGTCTTGTGCCCATATTTTCTTCTGTTTTCC +
Preference number: 3 (lower is better)
Translates to: SGLSIVSNIRVT*QVLCPYFLLFS
Trigger: GGAAAACAGAAGAAAATATGGGCACAAGACTTGCCAGGTCACTCTAATATTTGAGACTATGCTCAACCCAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
3UTR-3UTR CAA 90 bp AATTGTGCCCAGCCAGAAGTTGGTATCTGCATGGGAAACCTGAAGCTTTTAAAGATCATTACAAAAATTTaGAGTGATGGAGCCTGGATC +
Preference number: 3 (lower is better)
Translates to: NCAQPEVGICMGNLKLLKIITKI*SDGAWI
Trigger: GATCCAGGCTCCATCACTCAAAATTTTTGTAATGAT...CTTTAAAAGCTTCAGGTTTCCCATGCAGATACCAACTTCTGGCTGGGCACAATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR-3UTR CAA 90 bp ATCATGTCACAGGCATTTATAGGACAAGGTTCAAGTTCCATGGTATATTTAGTTTTCACTGATCTTCTGTaGGTGACTGACCATACAGCA +
Preference number: 3 (lower is better)
Translates to: IMSQAFIGQGSSSMVYLVFTDLL*VTDHTA
Trigger: TGCTGTATGGTCAGTCACCAACAGAAGATCAGTGAA...AACTAAATATACCATGGAACTTGAACCTTGTCCTATAAATGCCTGTGACATGAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR-3UTR CAA 90 bp CATTGCCTCCAAGCAGTTTCAAAACTGCATCAAAAGTCTTCATCAGGAACTAAAGGGTTGGGCTTCTGTTaGTTTAAAAATCTTGTCTTG +
Preference number: 3 (lower is better)
Translates to: HCLQAVSKLHQKSSSGTKGLGFC*FKNLVL
Trigger: CAAGACAAGATTTTTAAACAAACAGAAGCCCAACCC...TTTAGTTCCTGATGAAGACTTTTGATGCAGTTTTGAAACTGCTTGGAGGCAATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR-3UTR CAA 90 bp CATTCAGTCTATAAACCCATGGTTGTTAAGACAGCAGTAGAAGCCAGAGATTTGCCCATTGTCTTTTCATaGCTTTTTGCAGTAAGTTTG +
Preference number: 3 (lower is better)
Translates to: HSVYKPMVVKTAVEARDLPIVFS*LFAVSL
Trigger: CAAACTTACTGCAAAAAGCAATGAAAAGACAATGGG...CAAATCTCTGGCTTCTACTGCTGTCTTAACAACCATGGGTTTATAGACTGAATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000230040.2
3UTR TCA 72 bp TTGGAGAAAGGCCTGTTTAGATGTTGGTTCTCATGTTaGATGCTGGTTTTCTGGAAATATCATTACTATGGG +
Preference number: 3 (lower is better)
Translates to: LEKGLFRCWFSC*MLVFWKYHYYG
Trigger: CCCATAGTAATGATATTTCCAGAAAACCAGCATTCAACATGAGAACCAACATCTAAACAGGCCTTTCTCCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR CCA 72 bp GGTATCTGCATGGGAAACCTGAAGCTTTTAAAGCGCTaGTGTTCTGATAAGGATAAATACGCTATTTTAGTT +
Preference number: 3 (lower is better)
Translates to: GICMGNLKLLKR*CSDKDKYAILV
Trigger: AACTAAAATAGCGTATTTATCCTTATCAGAACACCAGCGCTTTAAAAGCTTCAGGTTTCCCATGCAGATACC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR CCA 72 bp CAGGGTTGGGCTTCTGTTTGTTTAAAAATCTTGTCTTaGATAAGGTTTCTAAAAACTTATTCAAACACAGTG +
Preference number: 3 (lower is better)
Translates to: QGWASVCLKILS*IRFLKTYSNTV
Trigger: CACTGTGTTTGAATAAGTTTTTAGAAACCTTATCCAAGACAAGATTTTTAAACAAACAGAAGCCCAACCCTG
35% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR GCA 90 bp AGGAGCCTGCCAGGGCCTGCCTTCTGCTGCCCATGCTTAGAGGCGAGAAGGGGGTATCGGTGGTCTCCCTaGCACAAAAGGTTGCCAGCA +
Preference number: 4 (lower is better)
Translates to: RSLPGPAFCCPCLEARRGYRWSP*HKRLPA
Trigger: TGCTGGCAACCTTTTGTGGCAGGGAGACCACCGATA...CCCCCTTCTCGCCTCTAAGCATGGGCAGCAGAAGGCAGGCCCTGGCAGGCTCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR CCA 90 bp AGGGCTGCTCTGTGTTTGTGTGGAGTGGCAGGTGTTGACACCTCATGGTGCCCTTCTCTTCACCAGGTTTaGCAGGGCGCGGGAGGGCTG +
Preference number: 4 (lower is better)
Translates to: RAALCLCGVAGVDTSWCPSLHQV*QGAGGL
Trigger: CAGCCCTCCCGCGCCCTGCCAAACCTGGTGAAGAGA...AGGGCACCATGAGGTGTCAACACCTGCCACTCCACACAAACACAGAGCAGCCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR TCA 90 bp AGAAATGGCAACCTAAGCTCAGCTGGGATGCAGAGAGCGGGATGCGGAGAGCGACAGCCTCGGGCTCTCTaGCAGTTCCACCAGACCAAG +
Preference number: 4 (lower is better)
Translates to: RNGNLSSAGMQRAGCGERQPRAL*QFHQTK
Trigger: CTTGGTCTGGTGGAACTGTCAGAGAGCCCGAGGCTG...TCGCTCTCCGCATCCCGCTCTCTGCATCCCAGCTGAGCTTAGGTTGCCATTTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR TCA 90 bp TCACTTTCCAGAGCTGGAGGGCTGCTCTGTGTTTGTGTGGAGTGGCAGGTGTTGCTACCTGGAGGTCCCTaGCAGCCCTCGGGGAGTTCA +
Preference number: 4 (lower is better)
Translates to: SLSRAGGLLCVCVEWQVLLPGGP*QPSGSS
Trigger: TGAACTCCCCGAGGGCTGTCAGGGACCTCCAGGTAG...CAACACCTGCCACTCCACACAAACACAGAGCAGCCCTCCAGCTCTGGAAAGTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR GCA 90 bp ACACTTAGAGAGGCTCCAAGCCTTCTGGAAACTCCGCCCCTACTGGAGAGGAGATCCTGGCCGGGGGTCTaGTCAGTATCGGTGGTCTCC +
Preference number: 4 (lower is better)
Translates to: TLREAPSLLETPPLLERRSWPGV*SVSVVS
Trigger: GGAGACCACCGATACTGAGCAGACCCCCGGCCAGGA...TCTCCTCTCCAGTAGGGGCGGAGTTTCCAGAAGGCTTGGAGCCTCTCTAAGTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR GCA 90 bp AGTCTCCATACACGTGGCTGGGGGCAGGTCACTTTCCAGAGCTGGAGGGCTGCTAAGGAATACACGGCCTaGGAGGGCTCGATTTTCCCG +
Preference number: 4 (lower is better)
Translates to: SLHTRGWGQVTFQSWRAAKEYTA*EGSIFP
Trigger: CGGGAAAATCGAGCCCTCGCAGGCCGTGTATTCCTT...AGCAGCCCTCCAGCTCTGGAAAGTGACCTGCCCCCAGCCACGTGTATGGAGACT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR TCA 90 bp GAATTCAGGGCAGTGCCCATTGAGAGCACTGGTCAGACCCTATGGGACCTTCCAGTAGACAGATGGGCATaGCATGGGCCCCCAAGGGCA +
Preference number: 4 (lower is better)
Translates to: EFRAVPIESTGQTLWDLPVDRWA*HGPPRA
Trigger: TGCCCTTGGGGGCCCATGTCATGCCCATCTGTCTAC...TGGAAGGTCCCATAGGGTCTGACCAGTGCTCTCAATGGGCACTGCCCTGAATTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR CCA 90 bp CGACAGGAATCAGAGAAATGGCAACCTAAGCTCAGCTGGGATGCAGAGAGCGGGGGCATGGTACCCTTCTaGGCTGGGCGGCCATTGAAG +
Preference number: 4 (lower is better)
Translates to: RQESEKWQPKLSWDAESGGMVPF*AGRPLK
Trigger: CTTCAATGGCCGCCCAGCCCAGAAGGGTACCATGCC...CCCGCTCTCTGCATCCCAGCTGAGCTTAGGTTGCCATTTCTCTGATTCCTGTCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR CCA 90 bp AGAAATGGCAACCTAAGCTCAGCTGGGATGCAGAGAGCGGGATGCGGAGAGCGATGGCAATCCATGGCATaGTACCCTTCTGGGCTGGGC +
Preference number: 4 (lower is better)
Translates to: RNGNLSSAGMQRAGCGERWQSMA*YPSGLG
Trigger: GCCCAGCCCAGAAGGGTACCATGCCATGGATTGCCA...TCGCTCTCCGCATCCCGCTCTCTGCATCCCAGCTGAGCTTAGGTTGCCATTTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR CCA 90 bp AGAAATGGCAACCTAAGCTCAGCTGGGATGCAGAGAGCGGGATGCGGAGAGCGATTTAGCTCCACGGTATaGGCTGAAACCTCCGGCAGG +
Preference number: 4 (lower is better)
Translates to: RNGNLSSAGMQRAGCGERFSSTV*AETSGR
Trigger: CCTGCCGGAGGTTTCAGCCCATACCGTGGAGCTAAA...TCGCTCTCCGCATCCCGCTCTCTGCATCCCAGCTGAGCTTAGGTTGCCATTTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR CCA 90 bp GGCAACCTAAGCTCAGCTGGGATGCAGAGAGCGGGATGCGGAGAGCGAGAAGGACCCACCAGGTACCATTaGTCTCTCTCTGCATCTTTG +
Preference number: 4 (lower is better)
Translates to: GNLSSAGMQRAGCGEREGPTRYH*SLSASL
Trigger: CAAAGATGCAGAGAGAGACCAATGGTACCTGGTGGG...TCCTTCTCGCTCTCCGCATCCCGCTCTCTGCATCCCAGCTGAGCTTAGGTTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR TCA 90 bp CGACAGGAATCAGAGAAATGGCAACCTAAGCTCAGCTGGGATGCAGAGAGCGGGCGAGCACTTGGTCTTTaGAGGAATACACGGCCTGCG +
Preference number: 4 (lower is better)
Translates to: RQESEKWQPKLSWDAESGRALGL*RNTRPA
Trigger: CGCAGGCCGTGTATTCCTTCAAAGACCAAGTGCTCG...CCCGCTCTCTGCATCCCAGCTGAGCTTAGGTTGCCATTTCTCTGATTCCTGTCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR TCA 90 bp GATCCAGCCTGGCTGGCTTTGCTACTCTGCCTCTATAAAGACCAGGGAAAGGTGGACTGGTGGAGGCAGTaGGCAGCTGTCAAAACCCAG +
Preference number: 4 (lower is better)
Translates to: DPAWLALLLCLYKDQGKVDWWRQ*AAVKTQ
Trigger: CTGGGTTTTGACAGCTGCTCACTGCCTCCACCAGTC...CACCTTTCCCTGGTCTTTATAGAGGCAGAGTAGCAAAGCCAGCCAGGCTGGATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR TCA 90 bp TGTGTGGAGTGGCAGGTGTTGACACCTCATGGTGCCCTCTGGTATTTGAGTGGCTGTCTTCCACCACTATaGGGGCCTGCCATGGGAAGA +
Preference number: 4 (lower is better)
Translates to: CVEWQVLTPHGALWYLSGCLPPL*GPAMGR
Trigger: TCTTCCCATGGCAGGCCCTCATAGTGGTGGAAGACA...GCCACTCAAATACCAGAGGGCACCATGAGGTGTCAACACCTGCCACTCCACACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR CCA 90 bp GGGGTAGTGGGGCAAAGTGTTGTCCCTGAGTGTGGAGCCTTGGGCTTAATACCCTCTGCTCAGTATCGGTaGTCTCCCTGCCACAAAAGG +
Preference number: 4 (lower is better)
Translates to: GVVGQSVVPECGALGLIPSAQYR*SPCHKR
Trigger: CCTTTTGTGGCAGGGAGACCACCGATACTGAGCAGA...GGGTATTAAGCCCAAGGCTCCACACTCAGGGACAACACTTTGCCCCACTACCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR TCA 90 bp GAATTCAGGGCAGTGCCCATTGAGAGCACTGGTCAGACCCTATGGGACCTTCCAAGGATCTGGACACTGTaGGTCTGGGTGCTGATTGGT +
Preference number: 4 (lower is better)
Translates to: EFRAVPIESTGQTLWDLPRIWTL*VWVLIG
Trigger: ACCAATCAGCACCCAGACTCACAGTGTCCAGATCCT...TGGAAGGTCCCATAGGGTCTGACCAGTGCTCTCAATGGGCACTGCCCTGAATTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR TCA 90 bp AGTCCCAGGAACAAAAGTGTTTCCAGACAGTGTTCTCTGAGGGACAGCTCGGGCCGAGCACTTGGTCTTTaGAGGAATACACGGCCTGCG +
Preference number: 4 (lower is better)
Translates to: SPRNKSVSRQCSLRDSSGRALGL*RNTRPA
Trigger: CGCAGGCCGTGTATTCCTTCAAAGACCAAGTGCTCG...GCCCGAGCTGTCCCTCAGAGAACACTGTCTGGAAACACTTTTGTTCCTGGGACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR TCA 90 bp CACTTCCAGTGGCACATTTCCTCCACAAGGCCACTCCACTCCTGTACGGTGACATTCTTCTGGATCAAGTaGCTGGTGGAGGCAGTGAGC +
Preference number: 4 (lower is better)
Translates to: HFQWHISSTRPLHSCTVTFFWIK*LVEAVS
Trigger: GCTCACTGCCTCCACCAGTCACTTGATCCAGAAGAA...TGTCACCGTACAGGAGTGGAGTGGCCTTGTGGAGGAAATGTGCCACTGGAAGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR TCA 90 bp TCACTTTCCAGAGCTGGAGGGCTGCTCTGTGTTTGTGTGGAGTGGCAGGTGTTGGAACATGGGCTGCTGTaGGTATCCAGGACTCAGAGA +
Preference number: 4 (lower is better)
Translates to: SLSRAGGLLCVCVEWQVLEHGLL*VSRTQR
Trigger: TCTCTGAGTCCTGGATACTCACAGCAGCCCATGTTC...CAACACCTGCCACTCCACACAAACACAGAGCAGCCCTCCAGCTCTGGAAAGTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR TCA 90 bp TGTGTGGAGTGGCAGGTGTTGACACCTCATGGTGCCCTCTGGTATTTGAGTGGCCCTTCGAGACAGGTATaGCTGTGTTGTCTCTGCGCT +
Preference number: 4 (lower is better)
Translates to: CVEWQVLTPHGALWYLSGPSRQV*LCCLCA
Trigger: AGCGCAGAGACAACACAGTCATACCTGTCTCGAAGG...GCCACTCAAATACCAGAGGGCACCATGAGGTGTCAACACCTGCCACTCCACACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR TCA 90 bp AGTCCCAGGAACAAAAGTGTTTCCAGACAGTGTTCTCTGAGGGACAGCTCGGGCGGGCAGCAGAGCTATTaGCAGCTCCTGATTTGTCCC +
Preference number: 4 (lower is better)
Translates to: SPRNKSVSRQCSLRDSSGGQQSY*QLLICP
Trigger: GGGACAAATCAGGAGCTGTCAATAGCTCTGCTGCCC...GCCCGAGCTGTCCCTCAGAGAACACTGTCTGGAAACACTTTTGTTCCTGGGACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR TCA 90 bp GAGAGGCTCAGAGAGAGGAAGAGGCTTGGTTCTAGCTTTGGACTGTACTCTCTTACCAGTCCCAACATGTaGGGGGCTGGACCTTCAGGC +
Preference number: 4 (lower is better)
Translates to: ERLRERKRLGSSFGLYSLTSPNM*GAGPSG
Trigger: GCCTGAAGGTCCAGCCCCTCACATGTTGGGACTGGT...AAGAGAGTACAGTCCAAAGCTAGAACCAAGCCTCTTCCTCTCTCTGAGCCTCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR CCA 90 bp ACACTTAGAGAGGCTCCAAGCCTTCTGGAAACTCCGCCCCTACTGGAGAGGAGATGGGAACGCAGAACATaGGCTGCTGTGAGTATCCAG +
Preference number: 4 (lower is better)
Translates to: TLREAPSLLETPPLLERRWERRT*AAVSIQ
Trigger: CTGGATACTCACAGCAGCCCATGTTCTGCGTTCCCA...TCTCCTCTCCAGTAGGGGCGGAGTTTCCAGAAGGCTTGGAGCCTCTCTAAGTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR CCA 90 bp TGGGGGCAGGTCACTTTCCAGAGCTGGAGGGCTGCTCTGTGTTTGTGTGGAGTGACCGAGACTCATAGCTaGCTTTGCATTCAGCATGTG +
Preference number: 4 (lower is better)
Translates to: WGQVTFQSWRAALCLCGVTETHS*LCIQHV
Trigger: CACATGCTGAATGCAAAGCCAGCTATGAGTCTCGGT...CACTCCACACAAACACAGAGCAGCCCTCCAGCTCTGGAAAGTGACCTGCCCCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
3UTR CAA 72 bp GTAGTGGGGCAAAGTGTTGTCCCTGAGTGTGGAGCCTaGGGCTTAATACCCACAAGCCCTCATTCCTCACTG +
Preference number: 4 (lower is better)
Translates to: VVGQSVVPECGA*GLIPTSPHSSL
Trigger: CAGTGAGGAATGAGGGCTTGTGGGTATTAAGCCCAAGGCTCCACACTCAGGGACAACACTTTGCCCCACTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR TCA 90 bp CACTTCCAGTGGCACATTTCCTCCACAAGGCCACTCCACTCCTGTACGGTGACATGTGAGTCTGGGTGCTaGTTGGTTCTGGGGATTTCT +
Preference number: 4 (lower is better)
Translates to: HFQWHISSTRPLHSCTVTCESGC*LVLGIS
Trigger: AGAAATCCCCAGAACCAATCAGCACCCAGACTCACA...TGTCACCGTACAGGAGTGGAGTGGCCTTGTGGAGGAAATGTGCCACTGGAAGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR TCA 90 bp GCAGGCCACAGCAGCAGTCACTATGACCTGTATAACAGACTGCTCAGCAAGAGCAGGATCTGGACACTGTaGGTCTGGGTGCTGATTGGT +
Preference number: 4 (lower is better)
Translates to: AGHSSSHYDLYNRLLSKSRIWTL*VWVLIG
Trigger: ACCAATCAGCACCCAGACTCACAGTGTCCAGATCCT...GCTCTTGCTGAGCAGTCTGTTATACAGGTCATAGTGACTGCTGCTGTGGCCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR GCA 90 bp AGTCCCAGGAACAAAAGTGTTTCCAGACAGTGTTCTCTGAGGGACAGCTCGGGCCCTGCCACAAAAGGTTaGCAGCACCTGGTCTTCTGT +
Preference number: 4 (lower is better)
Translates to: SPRNKSVSRQCSLRDSSGPATKG*QHLVFC
Trigger: ACAGAAGACCAGGTGCTGGCAACCTTTTGTGGCAGG...GCCCGAGCTGTCCCTCAGAGAACACTGTCTGGAAACACTTTTGTTCCTGGGACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR GCA 90 bp AGCCCCAGCAGTAAAGAACCTCAGATAACAGAACTTCATCCCAAAAAGTGTGGCTCCTGGCCGGGGGTCTaGTCAGTATCGGTGGTCTCC +
Preference number: 4 (lower is better)
Translates to: SPSSKEPQITELHPKKCGSWPGV*SVSVVS
Trigger: GGAGACCACCGATACTGAGCAGACCCCCGGCCAGGA...GCCACACTTTTTGGGATGAAGTTCTGTTATCTGAGGTTCTTTACTGCTGGGGCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000230040.2
CDS-3UTR GCA 90 bp TGGGGGCAGGTCACTTTCCAGAGCTGGAGGGCTGCTCTGTGTTTGTGTGGAGTGAAAATGTCCTCAAACTaGAGGCTGACCATGAAGCCT +
Preference number: 4 (lower is better)
Translates to: WGQVTFQSWRAALCLCGVKMSSN*RLTMKP
Trigger: AGGCTTCATGGTCAGCCTGCAGTTTGAGGACATTTT...CACTCCACACAAACACAGAGCAGCCCTCCAGCTCTGGAAAGTGACCTGCCCCCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR GCA 90 bp GATCCAGCCTGGCTGGCTTTGCTACTCTGCCTCTATAAAGACCAGGGAAAGGTGAAGATCCTGGAGATCTaGTTCCGGGAGAACTTGGGG +
Preference number: 4 (lower is better)
Translates to: DPAWLALLLCLYKDQGKVKILEI*FRENLG
Trigger: CCCCAAGTTCTCCCGGAAGCAGATCTCCAGGATCTT...CACCTTTCCCTGGTCTTTATAGAGGCAGAGTAGCAAAGCCAGCCAGGCTGGATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR GCA 90 bp GCAGGCCACAGCAGCAGTCACTATGACCTGTATAACAGACTGCTCAGCAAGAGCAACCTCTGTAAGAACTaGTTCCCCCAGCCACTGACG +
Preference number: 4 (lower is better)
Translates to: AGHSSSHYDLYNRLLSKSNLCKN*FPQPLT
Trigger: CGTCAGTGGCTGGGGGAAGCAGTTCTTACAGAGGTT...GCTCTTGCTGAGCAGTCTGTTATACAGGTCATAGTGACTGCTGCTGTGGCCTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR CCA 90 bp AGTCCCAGGAACAAAAGTGTTTCCAGACAGTGTTCTCTGAGGGACAGCTCGGGCTCTGCTCAGTATCGGTaGTCTCCCTGCCACAAAAGG +
Preference number: 4 (lower is better)
Translates to: SPRNKSVSRQCSLRDSSGSAQYR*SPCHKR
Trigger: CCTTTTGTGGCAGGGAGACCACCGATACTGAGCAGA...GCCCGAGCTGTCCCTCAGAGAACACTGTCTGGAAACACTTTTGTTCCTGGGACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR CCA 90 bp TCACTTTCCAGAGCTGGAGGGCTGCTCTGTGTTTGTGTGGAGTGGCAGGTGTTGAGTCTGGGTGCTGATTaGTTCTGGGGATTTCTCTCC +
Preference number: 4 (lower is better)
Translates to: SLSRAGGLLCVCVEWQVLSLGAD*FWGFLS
Trigger: GGAGAGAAATCCCCAGAACCAATCAGCACCCAGACT...CAACACCTGCCACTCCACACAAACACAGAGCAGCCCTCCAGCTCTGGAAAGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR CCA 90 bp GCTGCTCTGTGTTTGTGTGGAGTGGCAGGTGTTGACACCTCATGGTGCCCTCTGCAGCTGACGAGCACTTaGTCTTTGAAGGAATACACG +
Preference number: 4 (lower is better)
Translates to: AALCLCGVAGVDTSWCPLQLTST*SLKEYT
Trigger: CGTGTATTCCTTCAAAGACCAAGTGCTCGTCAGCTG...CAGAGGGCACCATGAGGTGTCAACACCTGCCACTCCACACAAACACAGAGCAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR CCA 90 bp ATTGGAGTGTGTTTTGATGACTCTTCCCAGTTCCCTCCACATTCCCTCTCCAGGTATGAGGGCCTGCCATaGGAAGAGGCCAAGCTCAGC +
Preference number: 4 (lower is better)
Translates to: IGVCFDDSSQFPPHSLSRYEGLP*EEAKLS
Trigger: GCTGAGCTTGGCCTCTTCCCATGGCAGGCCCTCATA...CCTGGAGAGGGAATGTGGAGGGAACTGGGAAGAGTCATCAAAACACACTCCAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR TCA 90 bp TCACTTTCCAGAGCTGGAGGGCTGCTCTGTGTTTGTGTGGAGTGGCAGGTGTTGCCAGGTGACTGGATCTaGCCAAACATTTCGTTTAGC +
Preference number: 4 (lower is better)
Translates to: SLSRAGGLLCVCVEWQVLPGDWI*PNISFS
Trigger: GCTAAACGAAATGTTTGGTCAGATCCAGTCACCTGG...CAACACCTGCCACTCCACACAAACACAGAGCAGCCCTCCAGCTCTGGAAAGTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR TCA 90 bp ACTCATGGCTCTCTGTCTCTTTCCAATGAGACTCTGTCCCTTGACCTTGACTCCGGGCGTCGAAGCCTGTaGATCGTTCCTCATTGGAGA +
Preference number: 4 (lower is better)
Translates to: THGSLSLSNETLSLDLDSGRRSL*IVPHWR
Trigger: TCTCCAATGAGGAACGATTCACAGGCTTCGACGCCC...GGAGTCAAGGTCAAGGGACAGAGTCTCATTGGAAAGAGACAGAGAGCCATGAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR TCA 90 bp AGTCCCAGGAACAAAAGTGTTTCCAGACAGTGTTCTCTGAGGGACAGCTCGGGCAGAACATGTTCTCTGTaGCACTGTAGTTGCCCGACC +
Preference number: 4 (lower is better)
Translates to: SPRNKSVSRQCSLRDSSGRTCSL*HCSCPT
Trigger: GGTCGGGCAACTACAGTGTCACAGAGAACATGTTCT...GCCCGAGCTGTCCCTCAGAGAACACTGTCTGGAAACACTTTTGTTCCTGGGACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR GCA 90 bp TGGGCTTTTGAAAACCTCAAAGCCCACTTCCAGTGGCACATTTCCTCCACAAGGAAGGAATACACGGCCTaGGAGGGCTCGATTTTCCCG +
Preference number: 4 (lower is better)
Translates to: WAFENLKAHFQWHISSTRKEYTA*EGSIFP
Trigger: CGGGAAAATCGAGCCCTCGCAGGCCGTGTATTCCTT...CCTTGTGGAGGAAATGTGCCACTGGAAGTGGGCTTTGAGGTTTTCAAAAGCCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR GCA 90 bp CACTTCCAGTGGCACATTTCCTCCACAAGGCCACTCCACTCCTGTACGGTGACAGATCTTGTTACTCCATaGACCGTCCTTCAGACACTC +
Preference number: 4 (lower is better)
Translates to: HFQWHISSTRPLHSCTVTDLVTP*TVLQTL
Trigger: GAGTGTCTGAAGGACGGTGCATGGAGTAACAAGATC...TGTCACCGTACAGGAGTGGAGTGGCCTTGTGGAGGAAATGTGCCACTGGAAGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR GCA 90 bp GATATTGGAGTGTGTTTTGATGACTCTTCCCAGTTCCCTCCACATTCCCTCTCCACCACTATGAGGGCCTaGCATGGGAAGAGGCCAAGC +
Preference number: 4 (lower is better)
Translates to: DIGVCFDDSSQFPPHSLSTTMRA*HGKRPS
Trigger: GCTTGGCCTCTTCCCATGGCAGGCCCTCATAGTGGT...GGAGAGGGAATGTGGAGGGAACTGGGAAGAGTCATCAAAACACACTCCAATATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR CCA 90 bp AGCACTGGTCAGACCCTATGGGACCTTCCAGATGAGGAGACTGAAGCTCACAGGAAGGTTGCCAGCACCTaGTCTTCTGTTTCTACCTTC +
Preference number: 4 (lower is better)
Translates to: STGQTLWDLPDEETEAHRKVAST*SSVSTF
Trigger: GAAGGTAGAAACAGAAGACCAGGTGCTGGCAACCTT...CCTGTGAGCTTCAGTCTCCTCATCTGGAAGGTCCCATAGGGTCTGACCAGTGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR CCA 90 bp CACTTCCAGTGGCACATTTCCTCCACAAGGCCACTCCACTCCTGTACGGTGACACAGCTGACGAGCACTTaGTCTTTGAAGGAATACACG +
Preference number: 4 (lower is better)
Translates to: HFQWHISSTRPLHSCTVTQLTST*SLKEYT
Trigger: CGTGTATTCCTTCAAAGACCAAGTGCTCGTCAGCTG...TGTCACCGTACAGGAGTGGAGTGGCCTTGTGGAGGAAATGTGCCACTGGAAGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR CCA 90 bp AGTCTCCATACACGTGGCTGGGGGCAGGTCACTTTCCAGAGCTGGAGGGCTGCTCTACAATTTTACAGGTaGGGATCTTGTTACTCCATG +
Preference number: 4 (lower is better)
Translates to: SLHTRGWGQVTFQSWRAALQFYR*GSCYSM
Trigger: CATGGAGTAACAAGATCCCCACCTGTAAAATTGTAG...AGCAGCCCTCCAGCTCTGGAAAGTGACCTGCCCCCAGCCACGTGTATGGAGACT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR CCA 90 bp AATTGTGCCCAGCCAGAAGTTGGTATCTGCATGGGAAACCTGAAGCTTTTAAAGGGGGACACCACACACTaGAAGGCAGGTGGGCAGGCT +
Preference number: 4 (lower is better)
Translates to: NCAQPEVGICMGNLKLLKGDTTH*KAGGQA
Trigger: AGCCTGCCCACCTGCCTTCCAGTGTGTGGTGTCCCC...CTTTAAAAGCTTCAGGTTTCCCATGCAGATACCAACTTCTGGCTGGGCACAATT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR CCA 90 bp GGAGAATTGGCCAAAACTCCTACATCTTTATCCACAGGCAGCAGGAAGAGAGCCGCTTCCGGGAGAACTTaGGGACACCACACACTGGAA +
Preference number: 4 (lower is better)
Translates to: GELAKTPTSLSTGSRKRAASGRT*GHHTLE
Trigger: TTCCAGTGTGTGGTGTCCCCAAGTTCTCCCGGAAGC...GGCTCTCTTCCTGCTGCCTGTGGATAAAGATGTAGGAGTTTTGGCCAATTCTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR CCA 90 bp CTGAGGACCAGGGAGGAAAGGTTGCTTGCATTCACTGATCTTCTGTTGGTGACTCAGCATGGCAATCCATaGCATGGTACCCTTCTGGGC +
Preference number: 4 (lower is better)
Translates to: LRTREERLLAFTDLLLVTQHGNP*HGTLLG
Trigger: GCCCAGAAGGGTACCATGCCATGGATTGCCATGCTG...AGTCACCAACAGAAGATCAGTGAATGCAAGCAACCTTTCCTCCCTGGTCCTCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR CCA 90 bp CCTTTCCTAATGATCAGGACCAAGCTTTCTTACATCAACACTGGGCTCCACGGCCAACATGTGAGGGGCTaGACCTTCAGGCTCAGGTCT +
Preference number: 4 (lower is better)
Translates to: PFLMIRTKLSYINTGLHGQHVRG*TFRLRS
Trigger: AGACCTGAGCCTGAAGGTCCAGCCCCTCACATGTTG...GCCGTGGAGCCCAGTGTTGATGTAAGAAAGCTTGGTCCTGATCATTAGGAAAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR TCA 90 bp TTTCTGATGGAGATCCCTGGGATAGCGAGCACTCAGCCTGTGAGAGCTACAGATTCATCTCATCAAAGATaGCGAAGGCCCCACCGCTAT +
Preference number: 4 (lower is better)
Translates to: FLMEIPGIASTQPVRATDSSHQR*RRPHRY
Trigger: ATAGCGGTGGGGCCTTCGTCATCTTTGATGAGATGA...ATCTGTAGCTCTCACAGGCTGAGTGCTCGCTATCCCAGGGATCTCCATCAGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR GCA 90 bp CAGACCCAAAGAGGCAGTCAGCTGTCCATCATTACAAAAATTTTGAGTGATGGATCCTGGCCGGGGGTCTaGTCAGTATCGGTGGTCTCC +
Preference number: 4 (lower is better)
Translates to: QTQRGSQLSIITKILSDGSWPGV*SVSVVS
Trigger: GGAGACCACCGATACTGAGCAGACCCCCGGCCAGGA...TCCATCACTCAAAATTTTTGTAATGATGGACAGCTGACTGCCTCTTTGGGTCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR GCA 90 bp AGCACTGGTCAGACCCTATGGGACCTTCCAGATGAGGAGACTGAAGCTCACAGGACTCATAGCTGGCTTTaGATTCAGCATGTGACACCA +
Preference number: 4 (lower is better)
Translates to: STGQTLWDLPDEETEAHRTHSWL*IQHVTP
Trigger: TGGTGTCACATGCTGAATGCAAAGCCAGCTATGAGT...CCTGTGAGCTTCAGTCTCCTCATCTGGAAGGTCCCATAGGGTCTGACCAGTGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR GCA 90 bp TCACTTTCCAGAGCTGGAGGGCTGCTCTGTGTTTGTGTGGAGTGGCAGGTGTTGCTCCATACACTTGCTTaGTACCACATTCTTCAGGTC +
Preference number: 4 (lower is better)
Translates to: SLSRAGGLLCVCVEWQVLLHTLA*YHILQV
Trigger: GACCTGAAGAATGTGGTAGCAAGCAAGTGTATGGAG...CAACACCTGCCACTCCACACAAACACAGAGCAGCCCTCCAGCTCTGGAAAGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR CCA 90 bp GATATTGGAGTGTGTTTTGATGACTCTTCCCAGTTCCCTCCACATTCCCTCTCCTTTAGCTCCACGGTATaGGCTGAAACCTCCGGCAGG +
Preference number: 4 (lower is better)
Translates to: DIGVCFDDSSQFPPHSLSFSSTV*AETSGR
Trigger: CCTGCCGGAGGTTTCAGCCCATACCGTGGAGCTAAA...GGAGAGGGAATGTGGAGGGAACTGGGAAGAGTCATCAAAACACACTCCAATATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR CCA 90 bp TGTGTGGAGTGGCAGGTGTTGACACCTCATGGTGCCCTCTGGTATTTGAGTGGCCAGGGCACCTCAGGATaGTCTTCAATGTCAAAAATG +
Preference number: 4 (lower is better)
Translates to: CVEWQVLTPHGALWYLSGQGTSG*SSMSKM
Trigger: CATTTTTGACATTGAAGACCATCCTGAGGTGCCCTG...GCCACTCAAATACCAGAGGGCACCATGAGGTGTCAACACCTGCCACTCCACACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR CCA 90 bp GAAGATGGAGCTAGGGACAGAACCCAGGACTCATGGCTCTCTGTCTCTTTCCAATGGGCTACCCAGTGCTaGCTCATCTCATCAAAGATG +
Preference number: 4 (lower is better)
Translates to: EDGARDRTQDSWLSVSFQWATQC*LISSKM
Trigger: CATCTTTGATGAGATGAGCCAGCACTGGGTAGCCCA...TTGGAAAGAGACAGAGAGCCATGAGTCCTGGGTTCTGTCCCTAGCTCCATCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
3UTR CAA 72 bp AGGGAGGAAAGGTTGCTTGCATTCACTGATCTTCTGTaGGTGACTGACCATACAGCAGGTGTTGGGCTGGGA +
Preference number: 4 (lower is better)
Translates to: REERLLAFTDLL*VTDHTAGVGLG
Trigger: TCCCAGCCCAACACCTGCTGTATGGTCAGTCACCAACAGAAGATCAGTGAATGCAAGCAACCTTTCCTCCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR CAA 72 bp AGAGGCTCAGAGAGAGGAAGAGGCTTGGTTCTAGCTTaGGACTGTACTCTCTTGCCTAGAGATTTCCCCTGC +
Preference number: 4 (lower is better)
Translates to: RGSERGRGLVLA*DCTLLPRDFPC
Trigger: GCAGGGGAAATCTCTAGGCAAGAGAGTACAGTCCAAAGCTAGAACCAAGCCTCTTCCTCTCTCTGAGCCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR TCA 90 bp AGTCCCAGGAACAAAAGTGTTTCCAGACAGTGTTCTCTGAGGGACAGCTCGGGCCTCATTGGAGAAATCTaGCCGGAAAGTGACAGACAT +
Preference number: 4 (lower is better)
Translates to: SPRNKSVSRQCSLRDSSGLIGEI*PESDRH
Trigger: ATGTCTGTCACTTTCCGGTCAGATTTCTCCAATGAG...GCCCGAGCTGTCCCTCAGAGAACACTGTCTGGAAACACTTTTGTTCCTGGGACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR TCA 90 bp AGCCCCAGCAGTAAAGAACCTCAGATAACAGAACTTCATCCCAAAAAGTGTGGCGGGCGTCGAAGCCTGTaGATCGTTCCTCATTGGAGA +
Preference number: 4 (lower is better)
Translates to: SPSSKEPQITELHPKKCGGRRSL*IVPHWR
Trigger: TCTCCAATGAGGAACGATTCACAGGCTTCGACGCCC...GCCACACTTTTTGGGATGAAGTTCTGTTATCTGAGGTTCTTTACTGCTGGGGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000230040.2
CDS-3UTR TCA 90 bp GATCCAGCCTGGCTGGCTTTGCTACTCTGCCTCTATAAAGACCAGGGAAAGGTGGGTATAGGAACATTCTaGGCTCTTGGGATAAGGGTT +
Preference number: 4 (lower is better)
Translates to: DPAWLALLLCLYKDQGKVGIGTF*ALGIRV
Trigger: AACCCTTATCCCAAGAGCTCAGAATGTTCCTATACC...CACCTTTCCCTGGTCTTTATAGAGGCAGAGTAGCAAAGCCAGCCAGGCTGGATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR TCA 90 bp GCTGCTCTGTGTTTGTGTGGAGTGGCAGGTGTTGACACCTCATGGTGCCCTCTGGGGACCCCATACTTTTaGACCAGCTTTAATCTTAAT +
Preference number: 4 (lower is better)
Translates to: AALCLCGVAGVDTSWCPLGTPYF*TSFNLN
Trigger: ATTAAGATTAAAGCTGGTTCAAAAGTATGGGGTCCC...CAGAGGGCACCATGAGGTGTCAACACCTGCCACTCCACACAAACACAGAGCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR TCA 90 bp ATTGGAGTGTGTTTTGATGACTCTTCCCAGTTCCCTCCACATTCCCTCTCCAGGTGTGAGTCTGGGTGCTaGTTGGTTCTGGGGATTTCT +
Preference number: 4 (lower is better)
Translates to: IGVCFDDSSQFPPHSLSRCESGC*LVLGIS
Trigger: AGAAATCCCCAGAACCAATCAGCACCCAGACTCACA...CCTGGAGAGGGAATGTGGAGGGAACTGGGAAGAGTCATCAAAACACACTCCAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR TCA 90 bp GCAGGCCACAGCAGCAGTCACTATGACCTGTATAACAGACTGCTCAGCAAGAGCCAGATTTGTATGTGGTaGGGTTGTTTCTGGTGGAGA +
Preference number: 4 (lower is better)
Translates to: AGHSSSHYDLYNRLLSKSQICMW*GCFWWR
Trigger: TCTCCACCAGAAACAACCTCACCACATACAAATCTG...GCTCTTGCTGAGCAGTCTGTTATACAGGTCATAGTGACTGCTGCTGTGGCCTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR TCA 90 bp AGTCCCAGGAACAAAAGTGTTTCCAGACAGTGTTCTCTGAGGGACAGCTCGGGCCAGATTTGTATGTGGTaGGGTTGTTTCTGGTGGAGA +
Preference number: 4 (lower is better)
Translates to: SPRNKSVSRQCSLRDSSGQICMW*GCFWWR
Trigger: TCTCCACCAGAAACAACCTCACCACATACAAATCTG...GCCCGAGCTGTCCCTCAGAGAACACTGTCTGGAAACACTTTTGTTCCTGGGACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR GCA 90 bp GATATTGGAGTGTGTTTTGATGACTCTTCCCAGTTCCCTCCACATTCCCTCTCCTATCGGTGGTCTCCCTaGCACAAAAGGTTGCCAGCA +
Preference number: 4 (lower is better)
Translates to: DIGVCFDDSSQFPPHSLSYRWSP*HKRLPA
Trigger: TGCTGGCAACCTTTTGTGGCAGGGAGACCACCGATA...GGAGAGGGAATGTGGAGGGAACTGGGAAGAGTCATCAAAACACACTCCAATATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR GCA 90 bp GAAGGGATTGGGTTCTCTGTAAGTAATCCATTCTCAGATGTTGCACTGTGTGGGAAGGAATACACGGCCTaGGAGGGCTCGATTTTCCCG +
Preference number: 4 (lower is better)
Translates to: EGIGFSVSNPFSDVALCGKEYTA*EGSIFP
Trigger: CGGGAAAATCGAGCCCTCGCAGGCCGTGTATTCCTT...CCCACACAGTGCAACATCTGAGAATGGATTACTTACAGAGAACCCAATCCCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230040.2
CDS-3UTR GCA 90 bp TTTCTGATGGAGATCCCTGGGATAGCGAGCACTCAGCCTGTGAGAGCTACAGATGATCTTGTTACTCCATaGACCGTCCTTCAGACACTC +
Preference number: 4 (lower is better)
Translates to: FLMEIPGIASTQPVRATDDLVTP*TVLQTL
Trigger: GAGTGTCTGAAGGACGGTGCATGGAGTAACAAGATC...ATCTGTAGCTCTCACAGGCTGAGTGCTCGCTATCCCAGGGATCTCCATCAGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR GCA 90 bp ATTGGAGTGTGTTTTGATGACTCTTCCCAGTTCCCTCCACATTCCCTCTCCAGGCAAGACACGTATCCTTaGCACCCTCATAGTAGCCAG +
Preference number: 4 (lower is better)
Translates to: IGVCFDDSSQFPPHSLSRQDTYP*HPHSSQ
Trigger: CTGGCTACTATGAGGGTGGCAAGGATACGTGTCTTG...CCTGGAGAGGGAATGTGGAGGGAACTGGGAAGAGTCATCAAAACACACTCCAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR CCA 90 bp GAACCCAGGACTCATGGCTCTCTGTCTCTTTCCAATGAGACTCTGTCCCTTGACGGTGCTGATTGGTTCTaGGGATTTCTCTCCACAGAA +
Preference number: 4 (lower is better)
Translates to: EPRTHGSLSLSNETLSLDGADWF*GFLSTE
Trigger: TTCTGTGGAGAGAAATCCCCAGAACCAATCAGCACC...GTCAAGGGACAGAGTCTCATTGGAAAGAGACAGAGAGCCATGAGTCCTGGGTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR CCA 90 bp GAAGATGGAGCTAGGGACAGAACCCAGGACTCATGGCTCTCTGTCTCTTTCCAAGAACCACTTGTCGTTTaGTACCCTCGATGTGTCTTC +
Preference number: 4 (lower is better)
Translates to: EDGARDRTQDSWLSVSFQEPLVV*YPRCVF
Trigger: GAAGACACATCGAGGGTACCAAACGACAAGTGGTTC...TTGGAAAGAGACAGAGAGCCATGAGTCCTGGGTTCTGTCCCTAGCTCCATCTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
3UTR CAA 72 bp CTCTGTCTCTTTCCAATGAGACTCTGTCCCTTGACCTaGACTCCCAGAACAGCAAGGGATAGATGGGTTGGA +
Preference number: 4 (lower is better)
Translates to: LCLFPMRLCPLT*TPRTARDRWVG
Trigger: TCCAACCCATCTATCCCTTGCTGTTCTGGGAGTCAAGGTCAAGGGACAGAGTCTCATTGGAAAGAGACAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR TCA 90 bp CACTTTCTGAATATGAAAACATCCAGACTCGCCCACATCCACACTCTGTGTCATCGAGCACTTGGTCTTTaGAGGAATACACGGCCTGCG +
Preference number: 4 (lower is better)
Translates to: HFLNMKTSRLAHIHTLCHRALGL*RNTRPA
Trigger: CGCAGGCCGTGTATTCCTTCAAAGACCAAGTGCTCG...ATGACACAGAGTGTGGATGTGGGCGAGTCTGGATGTTTTCATATTCAGAAAGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230040.2
CDS-3UTR CCA 90 bp CACTTTCTGAATATGAAAACATCCAGACTCGCCCACATCCACACTCTGTGTCATTTTAGCTCCACGGTATaGGCTGAAACCTCCGGCAGG +
Preference number: 4 (lower is better)
Translates to: HFLNMKTSRLAHIHTLCHFSSTV*AETSGR
Trigger: CCTGCCGGAGGTTTCAGCCCATACCGTGGAGCTAAA...ATGACACAGAGTGTGGATGTGGGCGAGTCTGGATGTTTTCATATTCAGAAAGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000230040.2
CDS-3UTR CCA 90 bp CAGACCCAAAGAGGCAGTCAGCTGTCCATCATTACAAAAATTTTGAGTGATGGAGGTACCCTTCTGGGCTaGGCGGCCATTGAAGATCCT +
Preference number: 4 (lower is better)
Translates to: QTQRGSQLSIITKILSDGGTLLG*AAIEDP
Trigger: AGGATCTTCAATGGCCGCCCAGCCCAGAAGGGTACC...TCCATCACTCAAAATTTTTGTAATGATGGACAGCTGACTGCCTCTTTGGGTCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR CCA 90 bp TTTCTGATGGAGATCCCTGGGATAGCGAGCACTCAGCCTGTGAGAGCTACAGATATGTTAAAGTCTGGATaGAGTATCACTCGGGCAGCA +
Preference number: 4 (lower is better)
Translates to: FLMEIPGIASTQPVRATDMLKSG*SITRAA
Trigger: TGCTGCCCGAGTGATACTCCATCCAGACTTTAACAT...ATCTGTAGCTCTCACAGGCTGAGTGCTCGCTATCCCAGGGATCTCCATCAGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
3UTR CAA 72 bp CAAAGAGGCAGTCAGCTGTCCATCATTACAAAAATTTaGAGTGATGGAGCCTGGATCCAGCCTGGCTGGCTT +
Preference number: 4 (lower is better)
Translates to: QRGSQLSIITKI*SDGAWIQPGWL
Trigger: AAGCCAGCCAGGCTGGATCCAGGCTCCATCACTCAAAATTTTTGTAATGATGGACAGCTGACTGCCTCTTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR CAA 72 bp GGAAGAGGCTTGGTTCTAGCTTTGGACTGTACTCTCTaGCCTAGAGATTTCCCCTGCATATTGCTAACCCCA +
Preference number: 4 (lower is better)
Translates to: GRGLVLALDCTL*PRDFPCILLTP
Trigger: TGGGGTTAGCAATATGCAGGGGAAATCTCTAGGCAAGAGAGTACAGTCCAAAGCTAGAACCAAGCCTCTTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR TCA 90 bp ATTGGAGTGTGTTTTGATGACTCTTCCCAGTTCCCTCCACATTCCCTCTCCAGGGGTATAGGAACATTCTaGGCTCTTGGGATAAGGGTT +
Preference number: 4 (lower is better)
Translates to: IGVCFDDSSQFPPHSLSRGIGTF*ALGIRV
Trigger: AACCCTTATCCCAAGAGCTCAGAATGTTCCTATACC...CCTGGAGAGGGAATGTGGAGGGAACTGGGAAGAGTCATCAAAACACACTCCAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR TCA 90 bp GAAGGGATTGGGTTCTCTGTAAGTAATCCATTCTCAGATGTTGCACTGTGTGGGTGTGAGTCTGGGTGCTaGTTGGTTCTGGGGATTTCT +
Preference number: 4 (lower is better)
Translates to: EGIGFSVSNPFSDVALCGCESGC*LVLGIS
Trigger: AGAAATCCCCAGAACCAATCAGCACCCAGACTCACA...CCCACACAGTGCAACATCTGAGAATGGATTACTTACAGAGAACCCAATCCCTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230040.2
CDS-3UTR TCA 90 bp AATTGTGCCCAGCCAGAAGTTGGTATCTGCATGGGAAACCTGAAGCTTTTAAAGTTGTCCGTTCAGGTGTaGCAGCATGGCAATCCATGG +
Preference number: 4 (lower is better)
Translates to: NCAQPEVGICMGNLKLLKLSVQV*QHGNPW
Trigger: CCATGGATTGCCATGCTGTCACACCTGAACGGACAA...CTTTAAAAGCTTCAGGTTTCCCATGCAGATACCAACTTCTGGCTGGGCACAATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR TCA 90 bp CTCAGCATCCATTCTAATCCACACTCAAGTGGGCAATGGAGTGTTGGTGGGTGGGGGACCCCATACTTTTaGACCAGCTTTAATCTTAAT +
Preference number: 4 (lower is better)
Translates to: LSIHSNPHSSGQWSVGGWGTPYF*TSFNLN
Trigger: ATTAAGATTAAAGCTGGTTCAAAAGTATGGGGTCCC...CCACCCACCAACACTCCATTGCCCACTTGAGTGTGGATTAGAATGGATGCTGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000230040.2
CDS-3UTR TCA 90 bp ACATCCACACTCTGTGTCATCATTCAGTCTATAAACCCATGGTTGTTAGGGACAAGGATCTGGACACTGTaGGTCTGGGTGCTGATTGGT +
Preference number: 4 (lower is better)
Translates to: TSTLCVIIQSINPWLLGTRIWTL*VWVLIG
Trigger: ACCAATCAGCACCCAGACTCACAGTGTCCAGATCCT...TGTCCCTAACAACCATGGGTTTATAGACTGAATGATGACACAGAGTGTGGATGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230040.2
CDS-3UTR GCA 90 bp GAACCTCAGATAACAGAACTTCATCCCAAAAAGTGTGGCTGGGACATACACTTTCCTGCCACAAAAGGTTaGCAGCACCTGGTCTTCTGT +
Preference number: 4 (lower is better)
Translates to: EPQITELHPKKCGWDIHFPATKG*QHLVFC
Trigger: ACAGAAGACCAGGTGCTGGCAACCTTTTGTGGCAGG...AAAGTGTATGTCCCAGCCACACTTTTTGGGATGAAGTTCTGTTATCTGAGGTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000230040.2
CDS-3UTR CCA 90 bp ACATCCACACTCTGTGTCATCATTCAGTCTATAAACCCATGGTTGTTAGGGACATCTGCTCAGTATCGGTaGTCTCCCTGCCACAAAAGG +
Preference number: 4 (lower is better)
Translates to: TSTLCVIIQSINPWLLGTSAQYR*SPCHKR
Trigger: CCTTTTGTGGCAGGGAGACCACCGATACTGAGCAGA...TGTCCCTAACAACCATGGGTTTATAGACTGAATGATGACACAGAGTGTGGATGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230040.2
CDS-3UTR CCA 90 bp GAAGGGATTGGGTTCTCTGTAAGTAATCCATTCTCAGATGTTGCACTGTGTGGGGGTGCTGATTGGTTCTaGGGATTTCTCTCCACAGAA +
Preference number: 4 (lower is better)
Translates to: EGIGFSVSNPFSDVALCGGADWF*GFLSTE
Trigger: TTCTGTGGAGAGAAATCCCCAGAACCAATCAGCACC...CCCACACAGTGCAACATCTGAGAATGGATTACTTACAGAGAACCCAATCCCTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000230040.2
CDS-3UTR CCA 90 bp ATTGGAGTGTGTTTTGATGACTCTTCCCAGTTCCCTCCACATTCCCTCTCCAGGTTCAGACACTCAATTTaGAATGTGTCCATCACCTCG +
Preference number: 4 (lower is better)
Translates to: IGVCFDDSSQFPPHSLSRFRHSI*NVSITS
Trigger: CGAGGTGATGGACACATTCCAAATTGAGTGTCTGAA...CCTGGAGAGGGAATGTGGAGGGAACTGGGAAGAGTCATCAAAACACACTCCAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
3UTR CAA 72 bp AGAACAGCAAGGGATAGATGGGTTGGAGTATGCTACTaGGTATATTCTCTACTGAGCTCAGGCTCTGGGTTG +
Preference number: 4 (lower is better)
Translates to: RTARDRWVGVCY*VYSLLSSGSGL
Trigger: CAACCCAGAGCCTGAGCTCAGTAGAGAATATACCAAGTAGCATACTCCAACCCATCTATCCCTTGCTGTTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR GCA 90 bp ATGGTTGAAGAACAGACCCAAAGAGGCAGTCAGCTGTCCATCATTACAAAAATTCCTGCCACAAAAGGTTaGCAGCACCTGGTCTTCTGT +
Preference number: 4 (lower is better)
Translates to: MVEEQTQRGSQLSIITKIPATKG*QHLVFC
Trigger: ACAGAAGACCAGGTGCTGGCAACCTTTTGTGGCAGG...AATTTTTGTAATGATGGACAGCTGACTGCCTCTTTGGGTCTGTTCTTCAACCAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR CCA 90 bp ATGGTTGAAGAACAGACCCAAAGAGGCAGTCAGCTGTCCATCATTACAAAAATTACCCCAGTGATCCTCTaGATCCAGTCCTTGTTGGGA +
Preference number: 4 (lower is better)
Translates to: MVEEQTQRGSQLSIITKITPVIL*IQSLLG
Trigger: TCCCAACAAGGACTGGATCCAGAGGATCACTGGGGT...AATTTTTGTAATGATGGACAGCTGACTGCCTCTTTGGGTCTGTTCTTCAACCAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR CAA 72 bp CTCTATTTAGAGCAAGGGGAAGATCTTTGGCTGCACTaGAGTATGGTGGATCACTGTGGGAATTTTAGGGAC +
Preference number: 4 (lower is better)
Translates to: LYLEQGEDLWLH*SMVDHCGNFRD
Trigger: GTCCCTAAAATTCCCACAGTGATCCACCATACTCAAGTGCAGCCAAAGATCTTCCCCTTGCTCTAAATAGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR GCA 90 bp CCAGAGATTTTTATGGAAACTAGCAGCAGCAATACAGGTCGAGGGTCAAAGTCTAAAATGTCCTCAAACTaGAGGCTGACCATGAAGCCT +
Preference number: 4 (lower is better)
Translates to: PEIFMETSSSNTGRGSKSKMSSN*RLTMKP
Trigger: AGGCTTCATGGTCAGCCTGCAGTTTGAGGACATTTT...AGACTTTGACCCTCGACCTGTATTGCTGCTGCTAGTTTCCATAAAAATCTCTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR GCA 90 bp CATTGCCTCCAAGCAGTTTCAAAACTGCATCAAAAGTCTTCATCAGGAACTAAATTTACATGCAGGTGCTaGTCGTCTTCGTCTGAGCGC +
Preference number: 4 (lower is better)
Translates to: HCLQAVSKLHQKSSSGTKFTCRC*SSSSER
Trigger: GCGCTCAGACGAAGACGAGCAGCACCTGCATGTAAA...TTTAGTTCCTGATGAAGACTTTTGATGCAGTTTTGAAACTGCTTGGAGGCAATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR GCA 90 bp CACTCCTGTACGGTGACATCTGATCTTTTCAAATATCAACACTCTCTAGTGACCCCATTGGTCTCTCTCTaGATCTTTGGTCACCATAGG +
Preference number: 4 (lower is better)
Translates to: HSCTVTSDLFKYQHSLVTPLVSL*IFGHHR
Trigger: CCTATGGTGACCAAAGATGCAGAGAGAGACCAATGG...GGTCACTAGAGAGTGTTGATATTTGAAAAGATCAGATGTCACCGTACAGGAGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR CCA 90 bp CACATCCACACTCTGTGTCATCATTCAGTCTATAAACCCATGGTTGTTAGGGACCAGGGCACCTCAGGATaGTCTTCAATGTCAAAAATG +
Preference number: 4 (lower is better)
Translates to: HIHTLCHHSVYKPMVVRDQGTSG*SSMSKM
Trigger: CATTTTTGACATTGAAGACCATCCTGAGGTGCCCTG...GTCCCTAACAACCATGGGTTTATAGACTGAATGATGACACAGAGTGTGGATGTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000230040.2
CDS-3UTR CCA 90 bp ATGGTTGAAGAACAGACCCAAAGAGGCAGTCAGCTGTCCATCATTACAAAAATTAGTCTGGGTGCTGATTaGTTCTGGGGATTTCTCTCC +
Preference number: 4 (lower is better)
Translates to: MVEEQTQRGSQLSIITKISLGAD*FWGFLS
Trigger: GGAGAGAAATCCCCAGAACCAATCAGCACCCAGACT...AATTTTTGTAATGATGGACAGCTGACTGCCTCTTTGGGTCTGTTCTTCAACCAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR CCA 90 bp CATTCAGTCTATAAACCCATGGTTGTTAAGACAGCAGTAGAAGCCAGAGATTTGAGTCTGGGTGCTGATTaGTTCTGGGGATTTCTCTCC +
Preference number: 4 (lower is better)
Translates to: HSVYKPMVVKTAVEARDLSLGAD*FWGFLS
Trigger: GGAGAGAAATCCCCAGAACCAATCAGCACCCAGACT...CAAATCTCTGGCTTCTACTGCTGTCTTAACAACCATGGGTTTATAGACTGAATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230040.2
CDS-3UTR CCA 90 bp TCCACACTCTGTGTCATCATTCAGTCTATAAACCCATGGTTGTTAGGGACATACCAGCTGACGAGCACTTaGTCTTTGAAGGAATACACG +
Preference number: 4 (lower is better)
Translates to: STLCVIIQSINPWLLGTYQLTST*SLKEYT
Trigger: CGTGTATTCCTTCAAAGACCAAGTGCTCGTCAGCTG...GTATGTCCCTAACAACCATGGGTTTATAGACTGAATGATGACACAGAGTGTGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230040.2
CDS-3UTR CCA 90 bp GAAGGGATTGGGTTCTCTGTAAGTAATCCATTCTCAGATGTTGCACTGTGTGGGTTCAGACACTCAATTTaGAATGTGTCCATCACCTCG +
Preference number: 4 (lower is better)
Translates to: EGIGFSVSNPFSDVALCGFRHSI*NVSITS
Trigger: CGAGGTGATGGACACATTCCAAATTGAGTGTCTGAA...CCCACACAGTGCAACATCTGAGAATGGATTACTTACAGAGAACCCAATCCCTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230040.2
CDS-3UTR CCA 90 bp TTCAAACACAGTGTTCTCAGTTTGGTGAGACAAAGCGACAGGAATCAGAGAAATTCAGGTGTGACAGCATaGCAATCCATGGCATGGTAC +
Preference number: 4 (lower is better)
Translates to: FKHSVLSLVRQSDRNQRNSGVTA*QSMAWY
Trigger: GTACCATGCCATGGATTGCCATGCTGTCACACCTGA...ATTTCTCTGATTCCTGTCGCTTTGTCTCACCAAACTGAGAACACTGTGTTTGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR CCA 90 bp CAGACCCAAAGAGGCAGTCAGCTGTCCATCATTACAAAAATTTTGAGTGATGGACACTTTCTTCTTCAATaGGGTATAGGCCTCCTGGCA +
Preference number: 4 (lower is better)
Translates to: QTQRGSQLSIITKILSDGHFLLQ*GIGLLA
Trigger: TGCCAGGAGGCCTATACCCCATTGAAGAAGAAAGTG...TCCATCACTCAAAATTTTTGTAATGATGGACAGCTGACTGCCTCTTTGGGTCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR CAA 72 bp GCATTTAAATGGGGCTGGCTTACAGTTTCAGAGGTTTaGCCCATTTTTATCATGGCAAGAGCATGGTGGCAT +
Preference number: 4 (lower is better)
Translates to: AFKWGWLTVSEV*PIFIMARAWWH
Trigger: ATGCCACCATGCTCTTGCCATGATAAAAATGGGCAAAACCTCTGAAACTGTAAGCCAGCCCCATTTAAATGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR TCA 90 bp ATGGTTGAAGAACAGACCCAAAGAGGCAGTCAGCTGTCCATCATTACAAAAATTCCAGGTGACTGGATCTaGCCAAACATTTCGTTTAGC +
Preference number: 4 (lower is better)
Translates to: MVEEQTQRGSQLSIITKIPGDWI*PNISFS
Trigger: GCTAAACGAAATGTTTGGTCAGATCCAGTCACCTGG...AATTTTTGTAATGATGGACAGCTGACTGCCTCTTTGGGTCTGTTCTTCAACCAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR TCA 90 bp CTCTGTGTCATCATTCAGTCTATAAACCCATGGTTGTTAGGGACATACACTTTCCCAGGTGACTGGATCTaGCCAAACATTTCGTTTAGC +
Preference number: 4 (lower is better)
Translates to: LCVIIQSINPWLLGTYTFPGDWI*PNISFS
Trigger: GCTAAACGAAATGTTTGGTCAGATCCAGTCACCTGG...GAAAGTGTATGTCCCTAACAACCATGGGTTTATAGACTGAATGATGACACAGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230040.2
CDS-3UTR TCA 90 bp ATCATGTCACAGGCATTTATAGGACAAGGTTCAAGTTCCATGGTATATTTAGTTGGGCGTCGAAGCCTGTaGATCGTTCCTCATTGGAGA +
Preference number: 4 (lower is better)
Translates to: IMSQAFIGQGSSSMVYLVGRRSL*IVPHWR
Trigger: TCTCCAATGAGGAACGATTCACAGGCTTCGACGCCC...AACTAAATATACCATGGAACTTGAACCTTGTCCTATAAATGCCTGTGACATGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR TCA 90 bp ACATCCACACTCTGTGTCATCATTCAGTCTATAAACCCATGGTTGTTAGGGACAGGTATAGGAACATTCTaGGCTCTTGGGATAAGGGTT +
Preference number: 4 (lower is better)
Translates to: TSTLCVIIQSINPWLLGTGIGTF*ALGIRV
Trigger: AACCCTTATCCCAAGAGCTCAGAATGTTCCTATACC...TGTCCCTAACAACCATGGGTTTATAGACTGAATGATGACACAGAGTGTGGATGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230040.2
CDS-3UTR GCA 90 bp CATTCAGTCTATAAACCCATGGTTGTTAAGACAGCAGTAGAAGCCAGAGATTTGGATCTTGTTACTCCATaGACCGTCCTTCAGACACTC +
Preference number: 4 (lower is better)
Translates to: HSVYKPMVVKTAVEARDLDLVTP*TVLQTL
Trigger: GAGTGTCTGAAGGACGGTGCATGGAGTAACAAGATC...CAAATCTCTGGCTTCTACTGCTGTCTTAACAACCATGGGTTTATAGACTGAATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230040.2
CDS-3UTR CCA 90 bp ATGGTTGAAGAACAGACCCAAAGAGGCAGTCAGCTGTCCATCATTACAAAAATTAAGGTTGCCAGCACCTaGTCTTCTGTTTCTACCTTC +
Preference number: 4 (lower is better)
Translates to: MVEEQTQRGSQLSIITKIKVAST*SSVSTF
Trigger: GAAGGTAGAAACAGAAGACCAGGTGCTGGCAACCTT...AATTTTTGTAATGATGGACAGCTGACTGCCTCTTTGGGTCTGTTCTTCAACCAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
3UTR CAA 72 bp TACTTGGTATATTCTCTACTGAGCTCAGGCTCTGGGTaGAGCATAGTCTCAAATATTAGAGTGACCTGGCAA +
Preference number: 4 (lower is better)
Translates to: YLVYSLLSSGSG*SIVSNIRVTWQ
Trigger: TTGCCAGGTCACTCTAATATTTGAGACTATGCTCAACCCAGAGCCTGAGCTCAGTAGAGAATATACCAAGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR TCA 90 bp CTTCCTTCTGTGTCTCTAGTTTTAGGTGATCAGGCTTCTTGGACCATAATAGAACTCATTGGAGAAATCTaGCCGGAAAGTGACAGACAT +
Preference number: 4 (lower is better)
Translates to: LPSVSLVLGDQASWTIIELIGEI*PESDRH
Trigger: ATGTCTGTCACTTTCCGGTCAGATTTCTCCAATGAG...TTCTATTATGGTCCAAGAAGCCTGATCACCTAAAACTAGAGACACAGAAGGAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR TCA 90 bp CCAGAGATTTTTATGGAAACTAGCAGCAGCAATACAGGTCGAGGGTCAAAGTCTGGGACCCCATACTTTTaGACCAGCTTTAATCTTAAT +
Preference number: 4 (lower is better)
Translates to: PEIFMETSSSNTGRGSKSGTPYF*TSFNLN
Trigger: ATTAAGATTAAAGCTGGTTCAAAAGTATGGGGTCCC...AGACTTTGACCCTCGACCTGTATTGCTGCTGCTAGTTTCCATAAAAATCTCTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR GCA 90 bp ATCCACACTCTGTGTCATCATTCAGTCTATAAACCCATGGTTGTTAGGGACATAAAAATGTCCTCAAACTaGAGGCTGACCATGAAGCCT +
Preference number: 4 (lower is better)
Translates to: IHTLCHHSVYKPMVVRDIKMSSN*RLTMKP
Trigger: AGGCTTCATGGTCAGCCTGCAGTTTGAGGACATTTT...TATGTCCCTAACAACCATGGGTTTATAGACTGAATGATGACACAGAGTGTGGAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000230040.2
CDS-3UTR CCA 90 bp CTTCCTTCTGTGTCTCTAGTTTTAGGTGATCAGGCTTCTTGGACCATAATAGAACAGGGCACCTCAGGATaGTCTTCAATGTCAAAAATG +
Preference number: 4 (lower is better)
Translates to: LPSVSLVLGDQASWTIIEQGTSG*SSMSKM
Trigger: CATTTTTGACATTGAAGACCATCCTGAGGTGCCCTG...TTCTATTATGGTCCAAGAAGCCTGATCACCTAAAACTAGAGACACAGAAGGAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR CCA 90 bp CATTGCCTCCAAGCAGTTTCAAAACTGCATCAAAAGTCTTCATCAGGAACTAAAGGTGCTGATTGGTTCTaGGGATTTCTCTCCACAGAA +
Preference number: 4 (lower is better)
Translates to: HCLQAVSKLHQKSSSGTKGADWF*GFLSTE
Trigger: TTCTGTGGAGAGAAATCCCCAGAACCAATCAGCACC...TTTAGTTCCTGATGAAGACTTTTGATGCAGTTTTGAAACTGCTTGGAGGCAATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR CCA 90 bp CACTCCTGTACGGTGACATCTGATCTTTTCAAATATCAACACTCTCTAGTGACCTTCAGACACTCAATTTaGAATGTGTCCATCACCTCG +
Preference number: 4 (lower is better)
Translates to: HSCTVTSDLFKYQHSLVTFRHSI*NVSITS
Trigger: CGAGGTGATGGACACATTCCAAATTGAGTGTCTGAA...GGTCACTAGAGAGTGTTGATATTTGAAAAGATCAGATGTCACCGTACAGGAGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR CCA 90 bp CAAATATCAACACTCTCTAGTGACCAAGCATACAAATATGTGAGCCTGTGGGGGCTACAATTTTACAGGTaGGGATCTTGTTACTCCATG +
Preference number: 4 (lower is better)
Translates to: QISTLSSDQAYKYVSLWGLQFYR*GSCYSM
Trigger: CATGGAGTAACAAGATCCCCACCTGTAAAATTGTAG...CCCCCACAGGCTCACATATTTGTATGCTTGGTCACTAGAGAGTGTTGATATTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR CCA 90 bp CAAATATCAACACTCTCTAGTGACCAAGCATACAAATATGTGAGCCTGTGGGGGGGATCCAGTCCTTGTTaGGATAGATGTAAGAATAGA +
Preference number: 4 (lower is better)
Translates to: QISTLSSDQAYKYVSLWGGSSPC*DRCKNR
Trigger: TCTATTCTTACATCTATCCCAACAAGGACTGGATCC...CCCCCACAGGCTCACATATTTGTATGCTTGGTCACTAGAGAGTGTTGATATTTG
42% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR CCA 90 bp ATGGTTGAAGAACAGACCCAAAGAGGCAGTCAGCTGTCCATCATTACAAAAATTGTCAGAGTTTACAATTaGGATTTCAATCTCCATCAG +
Preference number: 4 (lower is better)
Translates to: MVEEQTQRGSQLSIITKIVRVYN*DFNLHQ
Trigger: CTGATGGAGATTGAAATCCCAATTGTAAACTCTGAC...AATTTTTGTAATGATGGACAGCTGACTGCCTCTTTGGGTCTGTTCTTCAACCAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS TCA 90 bp GGGCCTGCCATGGGAAGAGGCCAAGCTCAGCATTGCGACCTCCGATaGTTCTCTTCACCAGGTTTGGCAGGGCGCGGGAGGGCTGTCCAC +
Preference number: 5 (lower is better)
Translates to: GPAMGRGQAQHCDLR*FSSPGLAGRGRAVH
Trigger: GTGGACAGCCCTCCCGCGCCCTGCCAAACCTGGTGAAGAGAATCATCGGAGGTCGCAATGCTGAGCTTGGCCTCTTCCCATGGCAGGCCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS CCA 90 bp GCCAAGCTCAGCATTGCGACCTCCGATGATTCTCTTCACCAGGTTTaGCAGGGCGCGGGAGGGCTGTCCACACACTGGAAGGCAGGTGGG +
Preference number: 5 (lower is better)
Translates to: AKLSIATSDDSLHQV*QGAGGLSTHWKAGG
Trigger: CCCACCTGCCTTCCAGTGTGTGGACAGCCCTCCCGCGCCCTGCCAAACCTGGTGAAGAGAATCATCGGAGGTCGCAATGCTGAGCTTGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS GCA 90 bp GACATGAAGGTGCCAGGCGAAAGAACCACTTCCTGGCCGGGGGTCTaGTCAGTATCGGTGGTCTCCCTGCCACAAAAGGTTGCCAGCACC +
Preference number: 5 (lower is better)
Translates to: DMKVPGERTTSWPGV*SVSVVSLPQKVAST
Trigger: GGTGCTGGCAACCTTTTGTGGCAGGGAGACCACCGATACTGAGCAGACCCCCGGCCAGGAAGTGGTTCTTTCGCCTGGCACCTTCATGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000089883.7
ENSMUST00000229619.2
ENSMUST00000230040.2
CDS-3UTR CAA 90 bp CAGTGGGGCAGTCTTCTCTTTCTTCAAGTAGTCTCCATACACGTGGCTGGGGGCCCAGGACACCAGGCCTaGGGCTACCCAGTGCTGGCT +
Preference number: 5 (lower is better)
Translates to: QWGSLLFLQVVSIHVAGGPGHQA*GYPVLA
Trigger: AGCCAGCACTGGGTAGCCCAAGGCCTGGTGTCCTGG...GCCCCCAGCCACGTGTATGGAGACTACTTGAAGAAAGAGAAGACTGCCCCACTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS TCA 90 bp GCATGGCAATCCATGGCATGGTACCCTTCTGGGCTGGGCGGCCATTaGAGATCCTGGAGATCTGCTTCCGGGAGAACTTGGGGACACCAC +
Preference number: 5 (lower is better)
Translates to: AWQSMAWYPSGLGGH*RSWRSASGRTWGHH
Trigger: GTGGTGTCCCCAAGTTCTCCCGGAAGCAGATCTCCAGGATCTTCAATGGCCGCCCAGCCCAGAAGGGTACCATGCCATGGATTGCCATGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS GCA 90 bp ATGGTACCCTTCTGGGCTGGGCGGCCATTGAAGATCCTGGAGATCTaGTTCCGGGAGAACTTGGGGACACCACACACTGGAAGGCAGGTG +
Preference number: 5 (lower is better)
Translates to: MVPFWAGRPLKILEI*FRENLGTPHTGRQV
Trigger: CACCTGCCTTCCAGTGTGTGGTGTCCCCAAGTTCTCCCGGAAGCAGATCTCCAGGATCTTCAATGGCCGCCCAGCCCAGAAGGGTACCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS GCA 90 bp CATTCTTCAGGTCCTCCCCAGGACACCAGGCCTTGGGCTACCCAGTaGTGGCTCATCTCATCAAAGATGACGAAGGCCCCACCGCTATCC +
Preference number: 5 (lower is better)
Translates to: HSSGPPQDTRPWATQ*WLISSKMTKAPPLS
Trigger: GGATAGCGGTGGGGCCTTCGTCATCTTTGATGAGATGAGCCAGCACTGGGTAGCCCAAGGCCTGGTGTCCTGGGGAGGACCTGAAGAATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS CCA 90 bp CCGTTCAGGTGTGACAGCATGGCAATCCATGGCATGGTACCCTTCTaGGCTGGGCGGCCATTGAAGATCCTGGAGATCTGCTTCCGGGAG +
Preference number: 5 (lower is better)
Translates to: PFRCDSMAIHGMVPF*AGRPLKILEICFRE
Trigger: CTCCCGGAAGCAGATCTCCAGGATCTTCAATGGCCGCCCAGCCCAGAAGGGTACCATGCCATGGATTGCCATGCTGTCACACCTGAACGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR CAA 90 bp AGGAGCCTGCCAGGGCCTGCCTTCTGCTGCCCATGCTTAGAGGCGAGAAGGGGGTCATCTTCCCTCTCCTaGCACTCATCCACATCTACA +
Preference number: 5 (lower is better)
Translates to: RSLPGPAFCCPCLEARRGSSSLS*HSSTST
Trigger: TGTAGATGTGGATGAGTGCAAGGAGAGGGAAGATGA...CCCCCTTCTCGCCTCTAAGCATGGGCAGCAGAAGGCAGGCCCTGGCAGGCTCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS TCA 90 bp ACACCAGGCCTTGGGCTACCCAGTGCTGGCTCATCTCATCAAAGATaGCGAAGGCCCCACCGCTATCCCCAAGACACGTATCCTTGCCAC +
Preference number: 5 (lower is better)
Translates to: TPGLGLPSAGSSHQR*RRPHRYPQDTYPCH
Trigger: GTGGCAAGGATACGTGTCTTGGGGATAGCGGTGGGGCCTTCGTCATCTTTGATGAGATGAGCCAGCACTGGGTAGCCCAAGGCCTGGTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS GCA 90 bp AGGTATGACTGTGTTGTCTCTGCGCTGGGAACGCAGAACATGGGCTaGTGTGAGTATCCAGGACTCAGAGAGCAGGGCCCCACTCCCGAA +
Preference number: 5 (lower is better)
Translates to: RYDCVVSALGTQNMG*CEYPGLREQGPTPE
Trigger: TTCGGGAGTGGGGCCCTGCTCTCTGAGTCCTGGATACTCACAGCAGCCCATGTTCTGCGTTCCCAGCGCAGAGACAACACAGTCATACCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS CCA 90 bp CAGGCGAAAGAACCACTTCCTGGCCGGGGGTCTGCTCAGTATCGGTaGTCTCCCTGCCACAAAAGGTTGCCAGCACCTGGTCTTCTGTTT +
Preference number: 5 (lower is better)
Translates to: QAKEPLPGRGSAQYR*SPCHKRLPAPGLLF
Trigger: AAACAGAAGACCAGGTGCTGGCAACCTTTTGTGGCAGGGAGACCACCGATACTGAGCAGACCCCCGGCCAGGAAGTGGTTCTTTCGCCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000089883.7
ENSMUST00000229619.2
ENSMUST00000230040.2
CDS CCA 90 bp CGGAAAGTGACAGACATGAAGGTGCCAGGCGAAAGAACCACTTCCTaGCCGGGGGTCTGCTCAGTATCGGTGGTCTCCCTGCCACAAAAG +
Preference number: 5 (lower is better)
Translates to: RKVTDMKVPGERTTS*PGVCSVSVVSLPQK
Trigger: CTTTTGTGGCAGGGAGACCACCGATACTGAGCAGACCCCCGGCCAGGAAGTGGTTCTTTCGCCTGGCACCTTCATGTCTGTCACTTTCCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000089883.7
ENSMUST00000229619.2
ENSMUST00000230040.2
CDS-3UTR CAA 90 bp AGAAATGGCAACCTAAGCTCAGCTGGGATGCAGAGAGCGGGATGCGGAGAGCGACCCTGCCACAAAAGGTaGCCAGCACCTGGTCTTCTG +
Preference number: 5 (lower is better)
Translates to: RNGNLSSAGMQRAGCGERPCHKR*PAPGLL
Trigger: CAGAAGACCAGGTGCTGGCAACCTTTTGTGGCAGGG...TCGCTCTCCGCATCCCGCTCTCTGCATCCCAGCTGAGCTTAGGTTGCCATTTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR CAA 90 bp GGCAACCTAAGCTCAGCTGGGATGCAGAGAGCGGGATGCGGAGAGCGAGAAGGATTACAGGTGGGGATCTaGTTACTCCATGCACCGTCC +
Preference number: 5 (lower is better)
Translates to: GNLSSAGMQRAGCGEREGLQVGI*LLHAPS
Trigger: GGACGGTGCATGGAGTAACAAGATCCCCACCTGTAA...TCCTTCTCGCTCTCCGCATCCCGCTCTCTGCATCCCAGCTGAGCTTAGGTTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS TCA 90 bp GGGAGGGCTGTCCACACACTGGAAGGCAGGTGGGCAGGCTTCTCTTaGGCACTTCGTTCGTCCAGGTCCCATGAGCAGAACACGTATATA +
Preference number: 5 (lower is better)
Translates to: GRAVHTLEGRWAGFS*ALRSSRSHEQNTYI
Trigger: TATATACGTGTTCTGCTCATGGGACCTGGACGAACGAAGTGCTCAAGAGAAGCCTGCCCACCTGCCTTCCAGTGTGTGGACAGCCCTCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS TCA 90 bp CGAACCACTTGTCGTTTGGTACCCTCGATGTGTCTTCCACCACTATaGGGGCCTGCCATGGGAAGAGGCCAAGCTCAGCATTGCGACCTC +
Preference number: 5 (lower is better)
Translates to: RTTCRLVPSMCLPPL*GPAMGRGQAQHCDL
Trigger: GAGGTCGCAATGCTGAGCTTGGCCTCTTCCCATGGCAGGCCCTCATAGTGGTGGAAGACACATCGAGGGTACCAAACGACAAGTGGTTCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS GCA 90 bp GAACCACTTCCTGGCCGGGGGTCTGCTCAGTATCGGTGGTCTCCCTaGCACAAAAGGTTGCCAGCACCTGGTCTTCTGTTTCTACCTTCA +
Preference number: 5 (lower is better)
Translates to: EPLPGRGSAQYRWSP*HKRLPAPGLLFLPS
Trigger: TGAAGGTAGAAACAGAAGACCAGGTGCTGGCAACCTTTTGTGGCAGGGAGACCACCGATACTGAGCAGACCCCCGGCCAGGAAGTGGTTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000089883.7
ENSMUST00000229619.2
ENSMUST00000230040.2
CDS-3UTR CAA 90 bp CAGTGGGGCAGTCTTCTCTTTCTTCAAGTAGTCTCCATACACGTGGCTGGGGGCCCCTGCCACAAAAGGTaGCCAGCACCTGGTCTTCTG +
Preference number: 5 (lower is better)
Translates to: QWGSLLFLQVVSIHVAGGPCHKR*PAPGLL
Trigger: CAGAAGACCAGGTGCTGGCAACCTTTTGTGGCAGGG...GCCCCCAGCCACGTGTATGGAGACTACTTGAAGAAAGAGAAGACTGCCCCACTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR CAA 90 bp CGACAGGAATCAGAGAAATGGCAACCTAAGCTCAGCTGGGATGCAGAGAGCGGGTCAAACGTGCTGGGGTaGTACAGTGGGTGGAGCGTG +
Preference number: 5 (lower is better)
Translates to: RQESEKWQPKLSWDAESGSNVLG*YSGWSV
Trigger: CACGCTCCACCCACTGTACAACCCCAGCACGTTTGA...CCCGCTCTCTGCATCCCAGCTGAGCTTAGGTTGCCATTTCTCTGATTCCTGTCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR CAA 90 bp GAAGATGGAGCTAGGGACAGAACCCAGGACTCATGGCTCTCTGTCTCTTTCCAATTCTCTTCACCAGGTTaGGCAGGGCGCGGGAGGGCT +
Preference number: 5 (lower is better)
Translates to: EDGARDRTQDSWLSVSFQFSSPG*AGRGRA
Trigger: AGCCCTCCCGCGCCCTGCCAAACCTGGTGAAGAGAA...TTGGAAAGAGACAGAGAGCCATGAGTCCTGGGTTCTGTCCCTAGCTCCATCTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS TCA 90 bp AGGCAGACAGACAGGCATCACAAAGTCGTTCAGCCTCGGGCTCTCTaGCAGTTCCACCAGACCAAGGTCGTTCTCAAACGTGCTGGGGTT +
Preference number: 5 (lower is better)
Translates to: RQTDRHHKVVQPRAL*QFHQTKVVLKRAGV
Trigger: AACCCCAGCACGTTTGAGAACGACCTTGGTCTGGTGGAACTGTCAGAGAGCCCGAGGCTGAACGACTTTGTGATGCCTGTCTGTCTGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS GCA 90 bp GTGTCACAGCTGACGAGCACTTGGTCTTTGAAGGAATACACGGCCTaGGAGGGCTCGATTTTCCCGTACACAGGAGGCTGTAGCTTTGGG +
Preference number: 5 (lower is better)
Translates to: VSQLTSTWSLKEYTA*EGSIFPYTGGCSFG
Trigger: CCCAAAGCTACAGCCTCCTGTGTACGGGAAAATCGAGCCCTCGCAGGCCGTGTATTCCTTCAAAGACCAAGTGCTCGTCAGCTGTGACAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089883.7
ENSMUST00000229619.2
ENSMUST00000230040.2
CDS-3UTR CAA 90 bp CGACAGGAATCAGAGAAATGGCAACCTAAGCTCAGCTGGGATGCAGAGAGCGGGCGGTTCTCTCCTGAGTaGTCGCTGCGGAATAGGATC +
Preference number: 5 (lower is better)
Translates to: RQESEKWQPKLSWDAESGRFSPE*SLRNRI
Trigger: GATCCTATTCCGCAGCGACAACTCAGGAGAGAACCG...CCCGCTCTCTGCATCCCAGCTGAGCTTAGGTTGCCATTTCTCTGATTCCTGTCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR CAA 90 bp CAGTGGGGCAGTCTTCTCTTTCTTCAAGTAGTCTCCATACACGTGGCTGGGGGCCGGGCAGCAGAGCTATaGACAGCTCCTGATTTGTCC +
Preference number: 5 (lower is better)
Translates to: QWGSLLFLQVVSIHVAGGRAAEL*TAPDLS
Trigger: GGACAAATCAGGAGCTGTCAATAGCTCTGCTGCCCG...GCCCCCAGCCACGTGTATGGAGACTACTTGAAGAAAGAGAAGACTGCCCCACTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS TCA 90 bp ACTTGGGGACACCACACACTGGAAGGCAGGTGGGCAGGCTTCTCTTaGGCACTTCGTTCGTCCAGGTCCCATGAGCAGAACACGTATATA +
Preference number: 5 (lower is better)
Translates to: TWGHHTLEGRWAGFS*ALRSSRSHEQNTYI
Trigger: TATATACGTGTTCTGCTCATGGGACCTGGACGAACGAAGTGCTCAAGAGAAGCCTGCCCACCTGCCTTCCAGTGTGTGGTGTCCCCAAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS GCA 90 bp GCCGGGGGTCTGCTCAGTATCGGTGGTCTCCCTGCCACAAAAGGTTaGCAGCACCTGGTCTTCTGTTTCTACCTTCACATAGTCGTATTC +
Preference number: 5 (lower is better)
Translates to: AGGLLSIGGLPATKG*QHLVFCFYLHIVVF
Trigger: GAATACGACTATGTGAAGGTAGAAACAGAAGACCAGGTGCTGGCAACCTTTTGTGGCAGGGAGACCACCGATACTGAGCAGACCCCCGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000089883.7
ENSMUST00000229619.2
ENSMUST00000230040.2
CDS GCA 90 bp TTGTCGTTTGGTACCCTCGATGTGTCTTCCACCACTATGAGGGCCTaGCATGGGAAGAGGCCAAGCTCAGCATTGCGACCTCCGATGATT +
Preference number: 5 (lower is better)
Translates to: LSFGTLDVSSTTMRA*HGKRPSSALRPPMI
Trigger: AATCATCGGAGGTCGCAATGCTGAGCTTGGCCTCTTCCCATGGCAGGCCCTCATAGTGGTGGAAGACACATCGAGGGTACCAAACGACAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS CCA 90 bp GTTTGGTACCCTCGATGTGTCTTCCACCACTATGAGGGCCTGCCATaGGAAGAGGCCAAGCTCAGCATTGCGACCTCCGATGATTCTCTT +
Preference number: 5 (lower is better)
Translates to: VWYPRCVFHHYEGLP*EEAKLSIATSDDSL
Trigger: AAGAGAATCATCGGAGGTCGCAATGCTGAGCTTGGCCTCTTCCCATGGCAGGCCCTCATAGTGGTGGAAGACACATCGAGGGTACCAAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR CAA 90 bp AGTCTCCATACACGTGGCTGGGGGCAGGTCACTTTCCAGAGCTGGAGGGCTGCTGTGAATCGTTCCTCATaGGAGAAATCTGACCGGAAA +
Preference number: 5 (lower is better)
Translates to: SLHTRGWGQVTFQSWRAAVNRSS*EKSDRK
Trigger: TTTCCGGTCAGATTTCTCCAATGAGGAACGATTCAC...AGCAGCCCTCCAGCTCTGGAAAGTGACCTGCCCCCAGCCACGTGTATGGAGACT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR CAA 90 bp GAATTCAGGGCAGTGCCCATTGAGAGCACTGGTCAGACCCTATGGGACCTTCCAACGAGCACTTGGTCTTaGAAGGAATACACGGCCTGC +
Preference number: 5 (lower is better)
Translates to: EFRAVPIESTGQTLWDLPTSTWS*KEYTAC
Trigger: GCAGGCCGTGTATTCCTTCAAAGACCAAGTGCTCGT...TGGAAGGTCCCATAGGGTCTGACCAGTGCTCTCAATGGGCACTGCCCTGAATTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR CAA 90 bp GGCAACCTAAGCTCAGCTGGGATGCAGAGAGCGGGATGCGGAGAGCGAGAAGGACTTCAGACACTCAATTaGGAATGTGTCCATCACCTC +
Preference number: 5 (lower is better)
Translates to: GNLSSAGMQRAGCGEREGLQTLN*ECVHHL
Trigger: GAGGTGATGGACACATTCCAAATTGAGTGTCTGAAG...TCCTTCTCGCTCTCCGCATCCCGCTCTCTGCATCCCAGCTGAGCTTAGGTTGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR CAA 90 bp GCACTGGTCAGACCCTATGGGACCTTCCAGATGAGGAGACTGAAGCTCACAGGATTACAGGTGGGGATCTaGTTACTCCATGCACCGTCC +
Preference number: 5 (lower is better)
Translates to: ALVRPYGTFQMRRLKLTGLQVGI*LLHAPS
Trigger: GGACGGTGCATGGAGTAACAAGATCCCCACCTGTAA...TCCTGTGAGCTTCAGTCTCCTCATCTGGAAGGTCCCATAGGGTCTGACCAGTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR CAA 90 bp GGCTCCAAGCCTTCTGGAAACTCCGCCCCTACTGGAGAGGAGAGGCTCAGAGAGTTGTATGTGGTGAGGTaGTTTCTGGTGGAGAAGGTT +
Preference number: 5 (lower is better)
Translates to: GSKPSGNSAPTGEERLRELYVVR*FLVEKV
Trigger: AACCTTCTCCACCAGAAACAACCTCACCACATACAA...CTCTCTGAGCCTCTCCTCTCCAGTAGGGGCGGAGTTTCCAGAAGGCTTGGAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS TCA 90 bp CGGTTCTCTCCTGAGTTGTCGCTGCGGAATAGGATCTGGACACTGTaGGTCTGGGTGCTGATTGGTTCTGGGGATTTCTCTCCACAGAAG +
Preference number: 5 (lower is better)
Translates to: RFSPELSLRNRIWTL*VWVLIGSGDFSPQK
Trigger: CTTCTGTGGAGAGAAATCCCCAGAACCAATCAGCACCCAGACTCACAGTGTCCAGATCCTATTCCGCAGCGACAACTCAGGAGAGAACCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089883.7
ENSMUST00000229619.2
ENSMUST00000230040.2
CDS CCA 90 bp GTGACATGTTCCTTCGAGACAGGTATGACTGTGTTGTCTCTGCGCTaGGAACGCAGAACATGGGCTGCTGTGAGTATCCAGGACTCAGAG +
Preference number: 5 (lower is better)
Translates to: VTCSFETGMTVLSLR*ERRTWAAVSIQDSE
Trigger: CTCTGAGTCCTGGATACTCACAGCAGCCCATGTTCTGCGTTCCCAGCGCAGAGACAACACAGTCATACCTGTCTCGAAGGAACATGTCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR CAA 90 bp TTTCTGATGGAGATCCCTGGGATAGCGAGCACTCAGCCTGTGAGAGCTACAGATCGGTTCTCTCCTGAGTaGTCGCTGCGGAATAGGATC +
Preference number: 5 (lower is better)
Translates to: FLMEIPGIASTQPVRATDRFSPE*SLRNRI
Trigger: GATCCTATTCCGCAGCGACAACTCAGGAGAGAACCG...ATCTGTAGCTCTCACAGGCTGAGTGCTCGCTATCCCAGGGATCTCCATCAGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR CAA 90 bp AGCATCCATTCTAATCCACACTCAAGTGGGCAATGGAGTGTTGGTGGGTGGGGCACGAGCACTTGGTCTTaGAAGGAATACACGGCCTGC +
Preference number: 5 (lower is better)
Translates to: SIHSNPHSSGQWSVGGWGTSTWS*KEYTAC
Trigger: GCAGGCCGTGTATTCCTTCAAAGACCAAGTGCTCGT...GCCCCACCCACCAACACTCCATTGCCCACTTGAGTGTGGATTAGAATGGATGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230040.2
CDS-3UTR CAA 90 bp GGGGTAGTGGGGCAAAGTGTTGTCCCTGAGTGTGGAGCCTTGGGCTTAATACCCCTTGTAATAGGGCTGTaGGCAGGAGTACCTTATCTC +
Preference number: 5 (lower is better)
Translates to: GVVGQSVVPECGALGLIPLVIGL*AGVPYL
Trigger: GAGATAAGGTACTCCTGCCAACAGCCCTATTACAAG...GGGTATTAAGCCCAAGGCTCCACACTCAGGGACAACACTTTGCCCCACTACCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR CAA 90 bp CCAGGACTCATGGCTCTCTGTCTCTTTCCAATGAGACTCTGTCCCTTGACCTTGACTGTCACATTAGGATaGGAGATGCCCCAGCCAGCC +
Preference number: 5 (lower is better)
Translates to: PGLMALCLFPMRLCPLTLTVTLG*EMPQPA
Trigger: GGCTGGCTGGGGCATCTCCAATCCTAATGTGACAGT...CAAGGTCAAGGGACAGAGTCTCATTGGAAAGAGACAGAGAGCCATGAGTCCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS TCA 90 bp GTAGTGGGCGTCGAAGCCTGTGAATCGTTCCTCATTGGAGAAATCTaGCCGGAAAGTGACAGACATGAAGGTGCCAGGCGAAAGAACCAC +
Preference number: 5 (lower is better)
Translates to: VVGVEACESFLIGEI*PESDRHEGARRKNH
Trigger: GTGGTTCTTTCGCCTGGCACCTTCATGTCTGTCACTTTCCGGTCAGATTTCTCCAATGAGGAACGATTCACAGGCTTCGACGCCCACTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089883.7
ENSMUST00000229619.2
ENSMUST00000230040.2
CDS TCA 90 bp AGTTGTCGCTGCGGAATAGGATCTGGACACTGTGAGTCTGGGTGCTaGTTGGTTCTGGGGATTTCTCTCCACAGAAGGGACCCCATACTT +
Preference number: 5 (lower is better)
Translates to: SCRCGIGSGHCESGC*LVLGISLHRRDPIL
Trigger: AAGTATGGGGTCCCTTCTGTGGAGAGAAATCCCCAGAACCAATCAGCACCCAGACTCACAGTGTCCAGATCCTATTCCGCAGCGACAACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000089883.7
ENSMUST00000229619.2
ENSMUST00000230040.2
CDS TCA 90 bp GTCTGGATGGAGTATCACTCGGGCAGCAGAGCTATTGACAGCTCCTaGTTTGTCCCGAACATCATGAAGGCCCAGATAGACGGTGACATG +
Preference number: 5 (lower is better)
Translates to: VWMEYHSGSRAIDSS*FVPNIMKAQIDGDM
Trigger: CATGTCACCGTCTATCTGGGCCTTCATGATGTTCGGGACAAATCAGGAGCTGTCAATAGCTCTGCTGCCCGAGTGATACTCCATCCAGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR CAA 90 bp AGCACTGGTCAGACCCTATGGGACCTTCCAGATGAGGAGACTGAAGCTCACAGGTCACCTCAGAGTCACTaGGATAGGAATCTGGATAGC +
Preference number: 5 (lower is better)
Translates to: STGQTLWDLPDEETEAHRSPQSH*DRNLDS
Trigger: GCTATCCAGATTCCTATCCAAGTGACTCTGAGGTGA...CCTGTGAGCTTCAGTCTCCTCATCTGGAAGGTCCCATAGGGTCTGACCAGTGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR CAA 90 bp CAGTGGGGCAGTCTTCTCTTTCTTCAAGTAGTCTCCATACACGTGGCTGGGGGCTCATCTTCCCTCTCCTaGCACTCATCCACATCTACA +
Preference number: 5 (lower is better)
Translates to: QWGSLLFLQVVSIHVAGGSSSLS*HSSTST
Trigger: TGTAGATGTGGATGAGTGCAAGGAGAGGGAAGATGA...GCCCCCAGCCACGTGTATGGAGACTACTTGAAGAAAGAGAAGACTGCCCCACTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR CAA 90 bp CACTTCCAGTGGCACATTTCCTCCACAAGGCCACTCCACTCCTGTACGGTGACAACAGCTGACGAGCACTaGGTCTTTGAAGGAATACAC +
Preference number: 5 (lower is better)
Translates to: HFQWHISSTRPLHSCTVTTADEH*VFEGIH
Trigger: GTGTATTCCTTCAAAGACCAAGTGCTCGTCAGCTGT...TGTCACCGTACAGGAGTGGAGTGGCCTTGTGGAGGAAATGTGCCACTGGAAGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS TCA 90 bp GCTGACCATGAAGCCTTCCTCCAGGTCAATGGTATAGGAACATTCTaGGCTCTTGGGATAAGGGTTGGGGTAATCGGGGCTGGTGATTGT +
Preference number: 5 (lower is better)
Translates to: ADHEAFLQVNGIGTF*ALGIRVGVIGAGDC
Trigger: ACAATCACCAGCCCCGATTACCCCAACCCTTATCCCAAGAGCTCAGAATGTTCCTATACCATTGACCTGGAGGAAGGCTTCATGGTCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000089883.7
ENSMUST00000229619.2
ENSMUST00000230040.2
CDS-3UTR CAA 90 bp ATCCATTCTAATCCACACTCAAGTGGGCAATGGAGTGTTGGTGGGTGGGGCGGGGTGAATCGTTCCTCATaGGAGAAATCTGACCGGAAA +
Preference number: 5 (lower is better)
Translates to: IHSNPHSSGQWSVGGWGGVNRSS*EKSDRK
Trigger: TTTCCGGTCAGATTTCTCCAATGAGGAACGATTCAC...CCCGCCCCACCCACCAACACTCCATTGCCCACTTGAGTGTGGATTAGAATGGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000230040.2
CDS-3UTR CAA 90 bp TCACTTTCCAGAGCTGGAGGGCTGCTCTGTGTTTGTGTGGAGTGGCAGGTGTTGCTTCAGACACTCAATTaGGAATGTGTCCATCACCTC +
Preference number: 5 (lower is better)
Translates to: SLSRAGGLLCVCVEWQVLLQTLN*ECVHHL
Trigger: GAGGTGATGGACACATTCCAAATTGAGTGTCTGAAG...CAACACCTGCCACTCCACACAAACACAGAGCAGCCCTCCAGCTCTGGAAAGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR CAA 90 bp AGAATAAATTGTGCCCAGCCAGAAGTTGGTATCTGCATGGGAAACCTGAAGCTTTGGGCTGGGCGGCCATaGAAGATCCTGGAGATCTGC +
Preference number: 5 (lower is better)
Translates to: RINCAQPEVGICMGNLKLWAGRP*KILEIC
Trigger: GCAGATCTCCAGGATCTTCAATGGCCGCCCAGCCCA...AAGCTTCAGGTTTCCCATGCAGATACCAACTTCTGGCTGGGCACAATTTATTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR CAA 90 bp AGCACTGGTCAGACCCTATGGGACCTTCCAGATGAGGAGACTGAAGCTCACAGGACTCCATACACTTGCTaGCTACCACATTCTTCAGGT +
Preference number: 5 (lower is better)
Translates to: STGQTLWDLPDEETEAHRTPYTC*LPHSSG
Trigger: ACCTGAAGAATGTGGTAGCAAGCAAGTGTATGGAGT...CCTGTGAGCTTCAGTCTCCTCATCTGGAAGGTCCCATAGGGTCTGACCAGTGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS GCA 90 bp GGGATTTCAATCTCCATCAGGTTCTCTGGAAACCTCTGTAAGAACTaGTTCCCCCAGCCACTGACGATGACCATGGTTCCTTCAGTGGAA +
Preference number: 5 (lower is better)
Translates to: GISISIRFSGNLCKN*FPQPLTMTMVPSVE
Trigger: TTCCACTGAAGGAACCATGGTCATCGTCAGTGGCTGGGGGAAGCAGTTCTTACAGAGGTTTCCAGAGAACCTGATGGAGATTGAAATCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR CAA 90 bp CCAGGACTCATGGCTCTCTGTCTCTTTCCAATGAGACTCTGTCCCTTGACCTTGCTTGTAATAGGGCTGTaGGCAGGAGTACCTTATCTC +
Preference number: 5 (lower is better)
Translates to: PGLMALCLFPMRLCPLTLLVIGL*AGVPYL
Trigger: GAGATAAGGTACTCCTGCCAACAGCCCTATTACAAG...CAAGGTCAAGGGACAGAGTCTCATTGGAAAGAGACAGAGAGCCATGAGTCCTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR CAA 90 bp GAGAGGCTCAGAGAGAGGAAGAGGCTTGGTTCTAGCTTTGGACTGTACTCTCTTCGAACCACTTGTCGTTaGGTACCCTCGATGTGTCTT +
Preference number: 5 (lower is better)
Translates to: ERLRERKRLGSSFGLYSLRTTCR*VPSMCL
Trigger: AAGACACATCGAGGGTACCAAACGACAAGTGGTTCG...AAGAGAGTACAGTCCAAAGCTAGAACCAAGCCTCTTCCTCTCTCTGAGCCTCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS GCA 90 bp TTTACATGCAGGTGCTGCTCGTCTTCGTCTGAGCGCCGTCTCCAGTaGTTTCCCATGATAATTTTGAAGTCAGAAGGGCTGAGCAAGTAT +
Preference number: 5 (lower is better)
Translates to: FTCRCCSSSSERRLQ*FPMIILKSEGLSKY
Trigger: ATACTTGCTCAGCCCTTCTGACTTCAAAATTATCATGGGAAAGCACTGGAGACGGCGCTCAGACGAAGACGAGCAGCACCTGCATGTAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS CCA 90 bp CATGTTTCAGCCCTGCAGGAGCTCCACAGTCTACAATTTTACAGGTaGGGATCTTGTTACTCCATGCACCGTCCTTCAGACACTCAATTT +
Preference number: 5 (lower is better)
Translates to: HVSALQELHSLQFYR*GSCYSMHRPSDTQF
Trigger: AAATTGAGTGTCTGAAGGACGGTGCATGGAGTAACAAGATCCCCACCTGTAAAATTGTAGACTGTGGAGCTCCTGCAGGGCTGAAACATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089883.7
ENSMUST00000229619.2
CDS CCA 90 bp CTTTTCTCCGGCACAGATCATGTCCTTGGTCACTTTCTTCTTCAATaGGGTATAGGCCTCCTGGCAGGTGTCAGAGTTTACAATTGGGAT +
Preference number: 5 (lower is better)
Translates to: LFSGTDHVLGHFLLQ*GIGLLAGVRVYNWD
Trigger: ATCCCAATTGTAAACTCTGACACCTGCCAGGAGGCCTATACCCCATTGAAGAAGAAAGTGACCAAGGACATGATCTGTGCCGGAGAAAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR CAA 90 bp GATATTGGAGTGTGTTTTGATGACTCTTCCCAGTTCCCTCCACATTCCCTCTCCACAGCTGACGAGCACTaGGTCTTTGAAGGAATACAC +
Preference number: 5 (lower is better)
Translates to: DIGVCFDDSSQFPPHSLSTADEH*VFEGIH
Trigger: GTGTATTCCTTCAAAGACCAAGTGCTCGTCAGCTGT...GGAGAGGGAATGTGGAGGGAACTGGGAAGAGTCATCAAAACACACTCCAATATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS-3UTR CAA 90 bp TGTGTGGAGTGGCAGGTGTTGACACCTCATGGTGCCCTCTGGTATTTGAGTGGCTACCTTATCTCAGATTaGTATGTGGTGAGGTTGTTT +
Preference number: 5 (lower is better)
Translates to: CVEWQVLTPHGALWYLSGYLISD*YVVRLF
Trigger: AAACAACCTCACCACATACAAATCTGAGATAAGGTA...GCCACTCAAATACCAGAGGGCACCATGAGGTGTCAACACCTGCCACTCCACACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS TCA 90 bp AATAGGGCTGTTGGCAGGAGTACCTTATCTCAGATTTGTATGTGGTaGGGTTGTTTCTGGTGGAGAAGGTTACTAGCCCATGTTTCAGCC +
Preference number: 5 (lower is better)
Translates to: NRAVGRSTLSQICMW*GCFWWRRLLAHVSA
Trigger: GGCTGAAACATGGGCTAGTAACCTTCTCCACCAGAAACAACCTCACCACATACAAATCTGAGATAAGGTACTCCTGCCAACAGCCCTATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089883.7
ENSMUST00000229619.2
CDS-3UTR CAA 90 bp GAAGGGATTGGGTTCTCTGTAAGTAATCCATTCTCAGATGTTGCACTGTGTGGGTCACCTCAGAGTCACTaGGATAGGAATCTGGATAGC +
Preference number: 5 (lower is better)
Translates to: EGIGFSVSNPFSDVALCGSPQSH*DRNLDS
Trigger: GCTATCCAGATTCCTATCCAAGTGACTCTGAGGTGA...CCCACACAGTGCAACATCTGAGAATGGATTACTTACAGAGAACCCAATCCCTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230040.2
CDS-3UTR CAA 90 bp ATCCACACTCTGTGTCATCATTCAGTCTATAAACCCATGGTTGTTAGGGACATACGGTTCTCTCCTGAGTaGTCGCTGCGGAATAGGATC +
Preference number: 5 (lower is better)
Translates to: IHTLCHHSVYKPMVVRDIRFSPE*SLRNRI
Trigger: GATCCTATTCCGCAGCGACAACTCAGGAGAGAACCG...TATGTCCCTAACAACCATGGGTTTATAGACTGAATGATGACACAGAGTGTGGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230040.2
CDS-3UTR CAA 90 bp AATTGTGCCCAGCCAGAAGTTGGTATCTGCATGGGAAACCTGAAGCTTTTAAAGTCACCTCAGAGTCACTaGGATAGGAATCTGGATAGC +
Preference number: 5 (lower is better)
Translates to: NCAQPEVGICMGNLKLLKSPQSH*DRNLDS
Trigger: GCTATCCAGATTCCTATCCAAGTGACTCTGAGGTGA...CTTTAAAAGCTTCAGGTTTCCCATGCAGATACCAACTTCTGGCTGGGCACAATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR CAA 90 bp TTCAAACACAGTGTTCTCAGTTTGGTGAGACAAAGCGACAGGAATCAGAGAAATACGAGCACTTGGTCTTaGAAGGAATACACGGCCTGC +
Preference number: 5 (lower is better)
Translates to: FKHSVLSLVRQSDRNQRNTSTWS*KEYTAC
Trigger: GCAGGCCGTGTATTCCTTCAAAGACCAAGTGCTCGT...ATTTCTCTGATTCCTGTCGCTTTGTCTCACCAAACTGAGAACACTGTGTTTGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR CAA 90 bp CTCTGTGTCATCATTCAGTCTATAAACCCATGGTTGTTAGGGACATACACTTTCTTACAGGTGGGGATCTaGTTACTCCATGCACCGTCC +
Preference number: 5 (lower is better)
Translates to: LCVIIQSINPWLLGTYTFLQVGI*LLHAPS
Trigger: GGACGGTGCATGGAGTAACAAGATCCCCACCTGTAA...GAAAGTGTATGTCCCTAACAACCATGGGTTTATAGACTGAATGATGACACAGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230040.2
CDS-3UTR CAA 90 bp TTCAAACACAGTGTTCTCAGTTTGGTGAGACAAAGCGACAGGAATCAGAGAAATGCCCACCAGGTACCATaGGTCTCTCTCTGCATCTTT +
Preference number: 5 (lower is better)
Translates to: FKHSVLSLVRQSDRNQRNAHQVP*VSLCIF
Trigger: AAAGATGCAGAGAGAGACCAATGGTACCTGGTGGGC...ATTTCTCTGATTCCTGTCGCTTTGTCTCACCAAACTGAGAACACTGTGTTTGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR CAA 90 bp AATTGTGCCCAGCCAGAAGTTGGTATCTGCATGGGAAACCTGAAGCTTTTAAAGGTGAATCGTTCCTCATaGGAGAAATCTGACCGGAAA +
Preference number: 5 (lower is better)
Translates to: NCAQPEVGICMGNLKLLKVNRSS*EKSDRK
Trigger: TTTCCGGTCAGATTTCTCCAATGAGGAACGATTCAC...CTTTAAAAGCTTCAGGTTTCCCATGCAGATACCAACTTCTGGCTGGGCACAATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR CAA 90 bp CAAATATCAACACTCTCTAGTGACCAAGCATACAAATATGTGAGCCTGTGGGGGTTGTATGTGGTGAGGTaGTTTCTGGTGGAGAAGGTT +
Preference number: 5 (lower is better)
Translates to: QISTLSSDQAYKYVSLWGLYVVR*FLVEKV
Trigger: AACCTTCTCCACCAGAAACAACCTCACCACATACAA...CCCCCACAGGCTCACATATTTGTATGCTTGGTCACTAGAGAGTGTTGATATTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR CAA 90 bp ATCATGTCACAGGCATTTATAGGACAAGGTTCAAGTTCCATGGTATATTTAGTTTGCTTCCGGGAGAACTaGGGGACACCACACACTGGA +
Preference number: 5 (lower is better)
Translates to: IMSQAFIGQGSSSMVYLVCFREN*GTPHTG
Trigger: TCCAGTGTGTGGTGTCCCCAAGTTCTCCCGGAAGCA...AACTAAATATACCATGGAACTTGAACCTTGTCCTATAAATGCCTGTGACATGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR CAA 90 bp CTCTGTGTCATCATTCAGTCTATAAACCCATGGTTGTTAGGGACATACACTTTCTCATCTTCCCTCTCCTaGCACTCATCCACATCTACA +
Preference number: 5 (lower is better)
Translates to: LCVIIQSINPWLLGTYTFSSSLS*HSSTST
Trigger: TGTAGATGTGGATGAGTGCAAGGAGAGGGAAGATGA...GAAAGTGTATGTCCCTAACAACCATGGGTTTATAGACTGAATGATGACACAGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230040.2
CDS-3UTR CAA 90 bp CTCTGTGTCATCATTCAGTCTATAAACCCATGGTTGTTAGGGACATACACTTTCACAGCTGACGAGCACTaGGTCTTTGAAGGAATACAC +
Preference number: 5 (lower is better)
Translates to: LCVIIQSINPWLLGTYTFTADEH*VFEGIH
Trigger: GTGTATTCCTTCAAAGACCAAGTGCTCGTCAGCTGT...GAAAGTGTATGTCCCTAACAACCATGGGTTTATAGACTGAATGATGACACAGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230040.2
CDS-3UTR CAA 90 bp CTCTGTGTCATCATTCAGTCTATAAACCCATGGTTGTTAGGGACATACACTTTCCTTCAGACACTCAATTaGGAATGTGTCCATCACCTC +
Preference number: 5 (lower is better)
Translates to: LCVIIQSINPWLLGTYTFLQTLN*ECVHHL
Trigger: GAGGTGATGGACACATTCCAAATTGAGTGTCTGAAG...GAAAGTGTATGTCCCTAACAACCATGGGTTTATAGACTGAATGATGACACAGAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230040.2
CDS-3UTR CAA 90 bp CAGACCCAAAGAGGCAGTCAGCTGTCCATCATTACAAAAATTTTGAGTGATGGATTTCCCATGATAATTTaGAAGTCAGAAGGGCTGAGC +
Preference number: 5 (lower is better)
Translates to: QTQRGSQLSIITKILSDGFPMII*KSEGLS
Trigger: GCTCAGCCCTTCTGACTTCAAAATTATCATGGGAAA...TCCATCACTCAAAATTTTTGTAATGATGGACAGCTGACTGCCTCTTTGGGTCTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR CAA 90 bp CAGACCCAAAGAGGCAGTCAGCTGTCCATCATTACAAAAATTTTGAGTGATGGAGCACAGATCATGTCCTaGGTCACTTTCTTCTTCAAT +
Preference number: 5 (lower is better)
Translates to: QTQRGSQLSIITKILSDGAQIMS*VTFFFN
Trigger: ATTGAAGAAGAAAGTGACCAAGGACATGATCTGTGC...TCCATCACTCAAAATTTTTGTAATGATGGACAGCTGACTGCCTCTTTGGGTCTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS-3UTR CAA 90 bp TTCAAACACAGTGTTCTCAGTTTGGTGAGACAAAGCGACAGGAATCAGAGAAATTACCTTATCTCAGATTaGTATGTGGTGAGGTTGTTT +
Preference number: 5 (lower is better)
Translates to: FKHSVLSLVRQSDRNQRNYLISD*YVVRLF
Trigger: AAACAACCTCACCACATACAAATCTGAGATAAGGTA...ATTTCTCTGATTCCTGTCGCTTTGTCTCACCAAACTGAGAACACTGTGTTTGAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS CCA 72 bp CCTCCCCAGGACACCAGGCCTTGGGCTACCCAGTGCTaGCTCATCTCATCAAAGATGACGAAGGCCCCACCG +
Preference number: 6 (lower is better)
Translates to: PPQDTRPWATQC*LISSKMTKAPP
Trigger: CGGTGGGGCCTTCGTCATCTTTGATGAGATGAGCCAGCACTGGGTAGCCCAAGGCCTGGTGTCCTGGGGAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS GCA 72 bp GGTCCTCCCCAGGACACCAGGCCTTGGGCTACCCAGTaGTGGCTCATCTCATCAAAGATGACGAAGGCCCCA +
Preference number: 6 (lower is better)
Translates to: GPPQDTRPWATQ*WLISSKMTKAP
Trigger: TGGGGCCTTCGTCATCTTTGATGAGATGAGCCAGCACTGGGTAGCCCAAGGCCTGGTGTCCTGGGGAGGACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS CCA 72 bp GAACCACTTCCTGGCCGGGGGTCTGCTCAGTATCGGTaGTCTCCCTGCCACAAAAGGTTGCCAGCACCTGGT +
Preference number: 6 (lower is better)
Translates to: EPLPGRGSAQYR*SPCHKRLPAPG
Trigger: ACCAGGTGCTGGCAACCTTTTGTGGCAGGGAGACCACCGATACTGAGCAGACCCCCGGCCAGGAAGTGGTTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000089883.7
ENSMUST00000229619.2
ENSMUST00000230040.2
CDS CAA 90 bp TCCACCACTATGAGGGCCTGCCATGGGAAGAGGCCAAGCTCAGCATaGCGACCTCCGATGATTCTCTTCACCAGGTTTGGCAGGGCGCGG +
Preference number: 6 (lower is better)
Translates to: STTMRACHGKRPSSA*RPPMILFTRFGRAR
Trigger: CCGCGCCCTGCCAAACCTGGTGAAGAGAATCATCGGAGGTCGCAATGCTGAGCTTGGCCTCTTCCCATGGCAGGCCCTCATAGTGGTGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS GCA 72 bp CCTGGCCGGGGGTCTGCTCAGTATCGGTGGTCTCCCTaGCACAAAAGGTTGCCAGCACCTGGTCTTCTGTTT +
Preference number: 6 (lower is better)
Translates to: PGRGSAQYRWSP*HKRLPAPGLLF
Trigger: AAACAGAAGACCAGGTGCTGGCAACCTTTTGTGGCAGGGAGACCACCGATACTGAGCAGACCCCCGGCCAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000089883.7
ENSMUST00000229619.2
ENSMUST00000230040.2
CDS GCA 72 bp GTGCCAGGCGAAAGAACCACTTCCTGGCCGGGGGTCTaGTCAGTATCGGTGGTCTCCCTGCCACAAAAGGTT +
Preference number: 6 (lower is better)
Translates to: VPGERTTSWPGV*SVSVVSLPQKV
Trigger: AACCTTTTGTGGCAGGGAGACCACCGATACTGAGCAGACCCCCGGCCAGGAAGTGGTTCTTTCGCCTGGCAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000089883.7
ENSMUST00000229619.2
ENSMUST00000230040.2
CDS GCA 72 bp TGTGTTGTCTCTGCGCTGGGAACGCAGAACATGGGCTaGTGTGAGTATCCAGGACTCAGAGAGCAGGGCCCC +
Preference number: 6 (lower is better)
Translates to: CVVSALGTQNMG*CEYPGLREQGP
Trigger: GGGGCCCTGCTCTCTGAGTCCTGGATACTCACAGCAGCCCATGTTCTGCGTTCCCAGCGCAGAGACAACACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS CCA 72 bp ACAGACATGAAGGTGCCAGGCGAAAGAACCACTTCCTaGCCGGGGGTCTGCTCAGTATCGGTGGTCTCCCTG +
Preference number: 6 (lower is better)
Translates to: TDMKVPGERTTS*PGVCSVSVVSL
Trigger: CAGGGAGACCACCGATACTGAGCAGACCCCCGGCCAGGAAGTGGTTCTTTCGCCTGGCACCTTCATGTCTGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000089883.7
ENSMUST00000229619.2
ENSMUST00000230040.2
CDS CCA 72 bp CCCCACAGAAGGGTTGTCCGTTCAGGTGTGACAGCATaGCAATCCATGGCATGGTACCCTTCTGGGCTGGGC +
Preference number: 6 (lower is better)
Translates to: PHRRVVRSGVTA*QSMAWYPSGLG
Trigger: GCCCAGCCCAGAAGGGTACCATGCCATGGATTGCCATGCTGTCACACCTGAACGGACAACCCTTCTGTGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS CCA 72 bp AGCATTGCGACCTCCGATGATTCTCTTCACCAGGTTTaGCAGGGCGCGGGAGGGCTGTCCACACACTGGAAG +
Preference number: 6 (lower is better)
Translates to: SIATSDDSLHQV*QGAGGLSTHWK
Trigger: CTTCCAGTGTGTGGACAGCCCTCCCGCGCCCTGCCAAACCTGGTGAAGAGAATCATCGGAGGTCGCAATGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS CAA 90 bp AGCATGGCAATCCATGGCATGGTACCCTTCTGGGCTGGGCGGCCATaGAAGATCCTGGAGATCTGCTTCCGGGAGAACTTGGGGACACCA +
Preference number: 6 (lower is better)
Translates to: SMAIHGMVPFWAGRP*KILEICFRENLGTP
Trigger: TGGTGTCCCCAAGTTCTCCCGGAAGCAGATCTCCAGGATCTTCAATGGCCGCCCAGCCCAGAAGGGTACCATGCCATGGATTGCCATGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS TCA 72 bp CACCACACACTGGAAGGCAGGTGGGCAGGCTTCTCTTaGGCACTTCGTTCGTCCAGGTCCCATGAGCAGAAC +
Preference number: 6 (lower is better)
Translates to: HHTLEGRWAGFS*ALRSSRSHEQN
Trigger: GTTCTGCTCATGGGACCTGGACGAACGAAGTGCTCAAGAGAAGCCTGCCCACCTGCCTTCCAGTGTGTGGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS TCA 72 bp GTCCACACACTGGAAGGCAGGTGGGCAGGCTTCTCTTaGGCACTTCGTTCGTCCAGGTCCCATGAGCAGAAC +
Preference number: 6 (lower is better)
Translates to: VHTLEGRWAGFS*ALRSSRSHEQN
Trigger: GTTCTGCTCATGGGACCTGGACGAACGAAGTGCTCAAGAGAAGCCTGCCCACCTGCCTTCCAGTGTGTGGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS GCA 72 bp AGAGCCTCCAGCCTCGGTTCTCTCCTGAGTTGTCGCTaGGGAATAGGATCTGGACACTGTGAGTCTGGGTGC +
Preference number: 6 (lower is better)
Translates to: RASSLGSLLSCR*GIGSGHCESGC
Trigger: GCACCCAGACTCACAGTGTCCAGATCCTATTCCGCAGCGACAACTCAGGAGAGAACCGAGGCTGGAGGCTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089883.7
ENSMUST00000229619.2
ENSMUST00000230040.2
CDS GCA 72 bp GGTACCCTCGATGTGTCTTCCACCACTATGAGGGCCTaGCATGGGAAGAGGCCAAGCTCAGCATTGCGACCT +
Preference number: 6 (lower is better)
Translates to: GTLDVSSTTMRA*HGKRPSSALRP
Trigger: AGGTCGCAATGCTGAGCTTGGCCTCTTCCCATGGCAGGCCCTCATAGTGGTGGAAGACACATCGAGGGTACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS CCA 72 bp CAGCATGGCAATCCATGGCATGGTACCCTTCTGGGCTaGGCGGCCATTGAAGATCCTGGAGATCTGCTTCCG +
Preference number: 6 (lower is better)
Translates to: QHGNPWHGTLLG*AAIEDPGDLLP
Trigger: CGGAAGCAGATCTCCAGGATCTTCAATGGCCGCCCAGCCCAGAAGGGTACCATGCCATGGATTGCCATGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS CCA 72 bp AGAGAGCAGGGCCCCACTCCCGAACCACTTGTCGTTTaGTACCCTCGATGTGTCTTCCACCACTATGAGGGC +
Preference number: 6 (lower is better)
Translates to: REQGPTPEPLVV*YPRCVFHHYEG
Trigger: GCCCTCATAGTGGTGGAAGACACATCGAGGGTACCAAACGACAAGTGGTTCGGGAGTGGGGCCCTGCTCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS CAA 72 bp CCATTGAAGATCCTGGAGATCTGCTTCCGGGAGAACTaGGGGACACCACACACTGGAAGGCAGGTGGGCAGG +
Preference number: 6 (lower is better)
Translates to: PLKILEICFREN*GTPHTGRQVGR
Trigger: CCTGCCCACCTGCCTTCCAGTGTGTGGTGTCCCCAAGTTCTCCCGGAAGCAGATCTCCAGGATCTTCAATGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS CAA 90 bp CAGGACACCACGCCCACCAGGTACCATTGGTCTCTCTCTGCATCTTaGGTCACCATAGGGCCTCCAGAGTCACCAGCACAGGCATCTTTC +
Preference number: 6 (lower is better)
Translates to: QDTTPTRYHWSLSAS*VTIGPPESPAQASF
Trigger: GAAAGATGCCTGTGCTGGTGACTCTGGAGGCCCTATGGTGACCAAAGATGCAGAGAGAGACCAATGGTACCTGGTGGGCGTGGTGTCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS CCA 72 bp TGTGACAGCATGGCAATCCATGGCATGGTACCCTTCTaGGCTGGGCGGCCATTGAAGATCCTGGAGATCTGC +
Preference number: 6 (lower is better)
Translates to: CDSMAIHGMVPF*AGRPLKILEIC
Trigger: GCAGATCTCCAGGATCTTCAATGGCCGCCCAGCCCAGAAGGGTACCATGCCATGGATTGCCATGCTGTCACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS CAA 72 bp GGGCTGGTGATTGTGCCTGTCCTCTGGGTAAAGAGATaGCCGCTGCATTCCACTCGGCAGGTCCTGTTGTCT +
Preference number: 6 (lower is better)
Translates to: GLVIVPVLWVKR*PLHSTRQVLLS
Trigger: AGACAACAGGACCTGCCGAGTGGAATGCAGCGGCAATCTCTTTACCCAGAGGACAGGCACAATCACCAGCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089883.7
ENSMUST00000229619.2
ENSMUST00000230040.2
CDS CAA 72 bp TCCACCAGACCAAGGTCGTTCTCAAACGTGCTGGGGTaGTACAGTGGGTGGAGCGTGGTGCGCTTTACATGC +
Preference number: 6 (lower is better)
Translates to: STRPRSFSNVLG*YSGWSVVRFTC
Trigger: GCATGTAAAGCGCACCACGCTCCACCCACTGTACAACCCCAGCACGTTTGAGAACGACCTTGGTCTGGTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS CAA 90 bp TTGCTTGCTACCACATTCTTCAGGTCCTCCCCAGGACACCAGGCCTaGGGCTACCCAGTGCTGGCTCATCTCATCAAAGATGACGAAGGC +
Preference number: 6 (lower is better)
Translates to: LLATTFFRSSPGHQA*GYPVLAHLIKDDEG
Trigger: GCCTTCGTCATCTTTGATGAGATGAGCCAGCACTGGGTAGCCCAAGGCCTGGTGTCCTGGGGAGGACCTGAAGAATGTGGTAGCAAGCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS TCA 72 bp AAGGCTACCCCCACAGAAGGGTTGTCCGTTCAGGTGTaGCAGCATGGCAATCCATGGCATGGTACCCTTCTG +
Preference number: 6 (lower is better)
Translates to: KATPTEGLSVQV*QHGNPWHGTLL
Trigger: CAGAAGGGTACCATGCCATGGATTGCCATGCTGTCACACCTGAACGGACAACCCTTCTGTGGGGGTAGCCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS TCA 72 bp CTTGGGCTACCCAGTGCTGGCTCATCTCATCAAAGATaGCGAAGGCCCCACCGCTATCCCCAAGACACGTAT +
Preference number: 6 (lower is better)
Translates to: LGLPSAGSSHQR*RRPHRYPQDTY
Trigger: ATACGTGTCTTGGGGATAGCGGTGGGGCCTTCGTCATCTTTGATGAGATGAGCCAGCACTGGGTAGCCCAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS GCA 72 bp CTGACGAGCACTTGGTCTTTGAAGGAATACACGGCCTaGGAGGGCTCGATTTTCCCGTACACAGGAGGCTGT +
Preference number: 6 (lower is better)
Translates to: LTSTWSLKEYTA*EGSIFPYTGGC
Trigger: ACAGCCTCCTGTGTACGGGAAAATCGAGCCCTCGCAGGCCGTGTATTCCTTCAAAGACCAAGTGCTCGTCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089883.7
ENSMUST00000229619.2
ENSMUST00000230040.2
CDS CAA 72 bp ACCACATTCTTCAGGTCCTCCCCAGGACACCAGGCCTaGGGCTACCCAGTGCTGGCTCATCTCATCAAAGAT +
Preference number: 6 (lower is better)
Translates to: TTFFRSSPGHQA*GYPVLAHLIKD
Trigger: ATCTTTGATGAGATGAGCCAGCACTGGGTAGCCCAAGGCCTGGTGTCCTGGGGAGGACCTGAAGAATGTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS CCA 72 bp TCCTTCGAGACAGGTATGACTGTGTTGTCTCTGCGCTaGGAACGCAGAACATGGGCTGCTGTGAGTATCCAG +
Preference number: 6 (lower is better)
Translates to: SFETGMTVLSLR*ERRTWAAVSIQ
Trigger: CTGGATACTCACAGCAGCCCATGTTCTGCGTTCCCAGCGCAGAGACAACACAGTCATACCTGTCTCGAAGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS CAA 72 bp ACGGTGACATGTTCCTTCGAGACAGGTATGACTGTGTaGTCTCTGCGCTGGGAACGCAGAACATGGGCTGCT +
Preference number: 6 (lower is better)
Translates to: TVTCSFETGMTV*SLRWERRTWAA
Trigger: AGCAGCCCATGTTCTGCGTTCCCAGCGCAGAGACAACACAGTCATACCTGTCTCGAAGGAACATGTCACCGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS TCA 72 bp TGCGGAATAGGATCTGGACACTGTGAGTCTGGGTGCTaGTTGGTTCTGGGGATTTCTCTCCACAGAAGGGAC +
Preference number: 6 (lower is better)
Translates to: CGIGSGHCESGC*LVLGISLHRRD
Trigger: GTCCCTTCTGTGGAGAGAAATCCCCAGAACCAATCAGCACCCAGACTCACAGTGTCCAGATCCTATTCCGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089883.7
ENSMUST00000229619.2
ENSMUST00000230040.2
CDS TCA 72 bp CCTGAGTTGTCGCTGCGGAATAGGATCTGGACACTGTaGGTCTGGGTGCTGATTGGTTCTGGGGATTTCTCT +
Preference number: 6 (lower is better)
Translates to: PELSLRNRIWTL*VWVLIGSGDFS
Trigger: AGAGAAATCCCCAGAACCAATCAGCACCCAGACTCACAGTGTCCAGATCCTATTCCGCAGCGACAACTCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089883.7
ENSMUST00000229619.2
ENSMUST00000230040.2
CDS TCA 72 bp GGTGCGCTTTACATGCAGGTGCTGCTCGTCTTCGTCTaGGCGCCGTCTCCAGTGCTTTCCCATGATAATTTT +
Preference number: 6 (lower is better)
Translates to: GALYMQVLLVFV*APSPVLSHDNF
Trigger: AAAATTATCATGGGAAAGCACTGGAGACGGCGCTCAGACGAAGACGAGCAGCACCTGCATGTAAAGCGCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS GCA 72 bp AGGTGCTGCTCGTCTTCGTCTGAGCGCCGTCTCCAGTaGTTTCCCATGATAATTTTGAAGTCAGAAGGGCTG +
Preference number: 6 (lower is better)
Translates to: RCCSSSSERRLQ*FPMIILKSEGL
Trigger: CAGCCCTTCTGACTTCAAAATTATCATGGGAAAGCACTGGAGACGGCGCTCAGACGAAGACGAGCAGCACCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS CCA 72 bp GCCCTGCAGGAGCTCCACAGTCTACAATTTTACAGGTaGGGATCTTGTTACTCCATGCACCGTCCTTCAGAC +
Preference number: 6 (lower is better)
Translates to: ALQELHSLQFYR*GSCYSMHRPSD
Trigger: GTCTGAAGGACGGTGCATGGAGTAACAAGATCCCCACCTGTAAAATTGTAGACTGTGGAGCTCCTGCAGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089883.7
ENSMUST00000229619.2
CDS TCA 72 bp GTCGAAGCCTGTGAATCGTTCCTCATTGGAGAAATCTaGCCGGAAAGTGACAGACATGAAGGTGCCAGGCGA +
Preference number: 6 (lower is better)
Translates to: VEACESFLIGEI*PESDRHEGARR
Trigger: TCGCCTGGCACCTTCATGTCTGTCACTTTCCGGTCAGATTTCTCCAATGAGGAACGATTCACAGGCTTCGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089883.7
ENSMUST00000229619.2
ENSMUST00000230040.2
CDS TCA 72 bp GAAGCCTTCCTCCAGGTCAATGGTATAGGAACATTCTaGGCTCTTGGGATAAGGGTTGGGGTAATCGGGGCT +
Preference number: 6 (lower is better)
Translates to: EAFLQVNGIGTF*ALGIRVGVIGA
Trigger: AGCCCCGATTACCCCAACCCTTATCCCAAGAGCTCAGAATGTTCCTATACCATTGACCTGGAGGAAGGCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000089883.7
ENSMUST00000229619.2
ENSMUST00000230040.2
CDS TCA 72 bp GAGTATCACTCGGGCAGCAGAGCTATTGACAGCTCCTaGTTTGTCCCGAACATCATGAAGGCCCAGATAGAC +
Preference number: 6 (lower is better)
Translates to: EYHSGSRAIDSS*FVPNIMKAQID
Trigger: GTCTATCTGGGCCTTCATGATGTTCGGGACAAATCAGGAGCTGTCAATAGCTCTGCTGCCCGAGTGATACTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS TCA 72 bp AGTCTGGATGGAGTATCACTCGGGCAGCAGAGCTATTaGCAGCTCCTGATTTGTCCCGAACATCATGAAGGC +
Preference number: 6 (lower is better)
Translates to: SLDGVSLGQQSY*QLLICPEHHEG
Trigger: GCCTTCATGATGTTCGGGACAAATCAGGAGCTGTCAATAGCTCTGCTGCCCGAGTGATACTCCATCCAGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS GCA 72 bp CTGCTCAGTATCGGTGGTCTCCCTGCCACAAAAGGTTaGCAGCACCTGGTCTTCTGTTTCTACCTTCACATA +
Preference number: 6 (lower is better)
Translates to: LLSIGGLPATKG*QHLVFCFYLHI
Trigger: TATGTGAAGGTAGAAACAGAAGACCAGGTGCTGGCAACCTTTTGTGGCAGGGAGACCACCGATACTGAGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089883.7
ENSMUST00000229619.2
ENSMUST00000230040.2
CDS GCA 72 bp ATCTCCATCAGGTTCTCTGGAAACCTCTGTAAGAACTaGTTCCCCCAGCCACTGACGATGACCATGGTTCCT +
Preference number: 6 (lower is better)
Translates to: ISIRFSGNLCKN*FPQPLTMTMVP
Trigger: AGGAACCATGGTCATCGTCAGTGGCTGGGGGAAGCAGTTCTTACAGAGGTTTCCAGAGAACCTGATGGAGAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS CCA 72 bp GATCTGGACACTGTGAGTCTGGGTGCTGATTGGTTCTaGGGATTTCTCTCCACAGAAGGGACCCCATACTTT +
Preference number: 6 (lower is better)
Translates to: DLDTVSLGADWF*GFLSTEGTPYF
Trigger: AAAGTATGGGGTCCCTTCTGTGGAGAGAAATCCCCAGAACCAATCAGCACCCAGACTCACAGTGTCCAGATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089883.7
ENSMUST00000229619.2
ENSMUST00000230040.2
CDS CAA 90 bp TCGTCTTCGTCTGAGCGCCGTCTCCAGTGCTTTCCCATGATAATTTaGAAGTCAGAAGGGCTGAGCAAGTATGAGCTGTGTAGGGTTGGT +
Preference number: 6 (lower is better)
Translates to: SSSSERRLQCFPMII*KSEGLSKYELCRVG
Trigger: ACCAACCCTACACAGCTCATACTTGCTCAGCCCTTCTGACTTCAAAATTATCATGGGAAAGCACTGGAGACGGCGCTCAGACGAAGACGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS GCA 72 bp AGTTGGAGACCTTTGTGTAGACTCCATACACTTGCTTaGTACCACATTCTTCAGGTCCTCCCCAGGACACCA +
Preference number: 6 (lower is better)
Translates to: SWRPLCRLHTLA*YHILQVLPRTP
Trigger: TGGTGTCCTGGGGAGGACCTGAAGAATGTGGTAGCAAGCAAGTGTATGGAGTCTACACAAAGGTCTCCAACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS CAA 90 bp GGCTGTTGGCAGGAGTACCTTATCTCAGATTTGTATGTGGTGAGGTaGTTTCTGGTGGAGAAGGTTACTAGCCCATGTTTCAGCCCTGCA +
Preference number: 6 (lower is better)
Translates to: GCWQEYLISDLYVVR*FLVEKVTSPCFSPA
Trigger: TGCAGGGCTGAAACATGGGCTAGTAACCTTCTCCACCAGAAACAACCTCACCACATACAAATCTGAGATAAGGTACTCCTGCCAACAGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089883.7
ENSMUST00000229619.2
CDS CAA 72 bp TCTGAGCGCCGTCTCCAGTGCTTTCCCATGATAATTTaGAAGTCAGAAGGGCTGAGCAAGTATGAGCTGTGT +
Preference number: 6 (lower is better)
Translates to: SERRLQCFPMII*KSEGLSKYELC
Trigger: ACACAGCTCATACTTGCTCAGCCCTTCTGACTTCAAAATTATCATGGGAAAGCACTGGAGACGGCGCTCAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS CCA 72 bp TCCAGGTCCCATGAGCAGAACACGTATATACACCTGTaGTATTGTGAAGCATCTTGTAATAGGGCTGTTGGC +
Preference number: 6 (lower is better)
Translates to: SRSHEQNTYIHL*YCEASCNRAVG
Trigger: GCCAACAGCCCTATTACAAGATGCTTCACAATACCACAGGTGTATATACGTGTTCTGCTCATGGGACCTGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089883.7
ENSMUST00000229619.2
CDS CCA 72 bp AGCGATGTCATGGTTGTAGTTCTGGATGTTAAAGTCTaGATGGAGTATCACTCGGGCAGCAGAGCTATTGAC +
Preference number: 6 (lower is better)
Translates to: SDVMVVVLDVKV*MEYHSGSRAID
Trigger: GTCAATAGCTCTGCTGCCCGAGTGATACTCCATCCAGACTTTAACATCCAGAACTACAACCATGACATCGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229619.2
CDS CAA 72 bp GGAGCTCCACAGTCTACAATTTTACAGGTGGGGATCTaGTTACTCCATGCACCGTCCTTCAGACACTCAATT +
Preference number: 6 (lower is better)
Translates to: GAPQSTILQVGI*LLHAPSFRHSI
Trigger: AATTGAGTGTCTGAAGGACGGTGCATGGAGTAACAAGATCCCCACCTGTAAAATTGTAGACTGTGGAGCTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089883.7
ENSMUST00000229619.2
CDS CAA 90 bp TCTTCAATGGGGTATAGGCCTCCTGGCAGGTGTCAGAGTTTACAATaGGGATTTCAATCTCCATCAGGTTCTCTGGAAACCTCTGTAAGA +
Preference number: 6 (lower is better)
Translates to: SSMGYRPPGRCQSLQ*GFQSPSGSLETSVR
Trigger: TCTTACAGAGGTTTCCAGAGAACCTGATGGAGATTGAAATCCCAATTGTAAACTCTGACACCTGCCAGGAGGCCTATACCCCATTGAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089883.7
CDS TCA 72 bp GTTGGCAGGAGTACCTTATCTCAGATTTGTATGTGGTaGGGTTGTTTCTGGTGGAGAAGGTTACTAGCCCAT +
Preference number: 6 (lower is better)
Translates to: VGRSTLSQICMW*GCFWWRRLLAH
Trigger: ATGGGCTAGTAACCTTCTCCACCAGAAACAACCTCACCACATACAAATCTGAGATAAGGTACTCCTGCCAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089883.7
ENSMUST00000229619.2
CDS CAA 72 bp CAGGAGTACCTTATCTCAGATTTGTATGTGGTGAGGTaGTTTCTGGTGGAGAAGGTTACTAGCCCATGTTTC +
Preference number: 6 (lower is better)
Translates to: QEYLISDLYVVR*FLVEKVTSPCF
Trigger: GAAACATGGGCTAGTAACCTTCTCCACCAGAAACAACCTCACCACATACAAATCTGAGATAAGGTACTCCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089883.7
ENSMUST00000229619.2