RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MARVELD2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021636

Ensembl transcript IDs: ENSMUST00000022137.14, ENSMUST00000163163.9, ENSMUST00000168772.2, ENSMUST00000225754.2

Found 186 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GAAAAACGCCAGGGCATTATGGGACACGCGCCTCTGGTTAGCTGCTaGCCCTTGCTCACTATGGACTGCTTCCTGAGACTCATCCTGTGT +
Preference number: 1 (lower is better)
Translates to: EKRQGIMGHAPLVSC*PLLTMDCFLRLILC
Trigger: ACACAGGATGAGTCTCAGGAAGCAGTCCATAGTGAGCAAGGGTCAGCAGCTAACCAGAGGCGCGTGTCCCATAATGCCCTGGCGTTTTTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
3UTR GCA 90 bp GTTTTGAGATGTCTGAGTGAAGTCACAGTGCGTTTGCCTAGGATGTaGTTCAACCAAGCGGAAGATGACCTGGAGGTGCCTGCTGCTCAC +
Preference number: 1 (lower is better)
Translates to: VLRCLSEVTVRLPRM*FNQAEDDLEVPAAH
Trigger: GTGAGCAGCAGGCACCTCCAGGTCATCTTCCGCTTGGTTGAAGCACATCCTAGGCAAACGCACTGTGACTTCACTCAGACATCTCAAAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
3UTR GCA 90 bp ATGTACAAAACGGCAATATCTTGCATTAAAGAGAGAGGGGGTCCTTaGTCTGAAGCCCAGGCTGGCTTTGAACTCGACACACTCCTGCCT +
Preference number: 1 (lower is better)
Translates to: MYKTAISCIKERGGP*SEAQAGFELDTLLP
Trigger: AGGCAGGAGTGTGTCGAGTTCAAAGCCAGCCTGGGCTTCAGAGCAAGGACCCCCTCTCTCTTTAATGCAAGATATTGCCGTTTTGTACAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
3UTR GCA 90 bp TTCCATAGCAGCAGCAGCAGCAACAGCAGGAGGCTCTGTTCCAGATaGTTGAGAAATAAAGGTGAGCACATATGGTCTCATAACTGCCCT +
Preference number: 1 (lower is better)
Translates to: FHSSSSSNSRRLCSR*LRNKGEHIWSHNCP
Trigger: AGGGCAGTTATGAGACCATATGTGCTCACCTTTATTTCTCAAGCATCTGGAACAGAGCCTCCTGCTGTTGCTGCTGCTGCTGCTATGGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
3UTR CCA 90 bp AATTGTTTGACTGGAAGCTGTAGTGGGTGGAAACTGTCACACAGATaGGGTAGGTGTGGCAATGAATCACAGGGGAGACACCAAGTAAAC +
Preference number: 1 (lower is better)
Translates to: NCLTGSCSGWKLSHR*GRCGNESQGRHQVN
Trigger: GTTTACTTGGTGTCTCCCCTGTGATTCATTGCCACACCTACCCCATCTGTGTGACAGTTTCCACCCACTACAGCTTCCAGTCAAACAATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
3UTR TCA 90 bp CACAGAGGACTGACCAACTCGCCCAAGAGCACAGAGTGTGACAACTaGTCTTGCTTCAAGCCCTTGTTCATCAGAAGAACCTTAAACTAT +
Preference number: 1 (lower is better)
Translates to: HRGLTNSPKSTECDN*SCFKPLFIRRTLNY
Trigger: ATAGTTTAAGGTTCTTCTGATGAACAAGGGCTTGAAGCAAGATCAGTTGTCACACTCTGTGCTCTTGGGCGAGTTGGTCAGTCCTCTGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
3UTR GCA 90 bp GAACTCGACACACTCCTGCCTCTGCTCTTGAGTGTCAGGGTGGTGTaGACGTGCTACCATGTTTTATTTATTTACTACTTGTCTTTTTCC +
Preference number: 1 (lower is better)
Translates to: ELDTLLPLLLSVRVV*TCYHVLFIYYLSFS
Trigger: GGAAAAAGACAAGTAGTAAATAAATAAAACATGGTAGCACGTGCACACCACCCTGACACTCAAGAGCAGAGGCAGGAGTGTGTCGAGTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
3UTR GCA 90 bp ACAAAACAAAACTTTGTCATCAGCACCCAGAACTTTCCAGGCCTCTaGCAGCTCCACTCATTAATTACTTTGGTTTCGCTACTTTGTAAA +
Preference number: 1 (lower is better)
Translates to: TKQNFVISTQNFPGL*QLHSLITLVSLLCK
Trigger: TTTACAAAGTAGCGAAACCAAAGTAATTAATGAGTGGAGCTGGCAGAGGCCTGGAAAGTTCTGGGTGCTGATGACAAAGTTTTGTTTTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
3UTR-3UTR TCA 90 bp ACACTCCTGCCTCTGCTCTTGAGTGTCAGGGTGGTGTGCACGTGCTACCATGTTCAGGCATGGAGGCCGTaGGGGGCCATAACAGTTCAC +
Preference number: 2 (lower is better)
Translates to: TLLPLLLSVRVVCTCYHVQAWRP*GAITVH
Trigger: GTGAACTGTTATGGCCCCTCACGGCCTCCATGCCTG...AACATGGTAGCACGTGCACACCACCCTGACACTCAAGAGCAGAGGCAGGAGTGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
3UTR-3UTR TCA 90 bp TGCATTAAAGAGAGAGGGGGTCCTTGCTCTGAAGCCCAGGCTGGCTTTGAACTCCAACCAAGCGGAAGATaGCCTGGAGGTGCCTGCTGC +
Preference number: 2 (lower is better)
Translates to: CIKERGGPCSEAQAGFELQPSGR*PGGACC
Trigger: GCAGCAGGCACCTCCAGGTCATCTTCCGCTTGGTTG...GAGTTCAAAGCCAGCCTGGGCTTCAGAGCAAGGACCCCCTCTCTCTTTAATGCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
3UTR-3UTR TCA 90 bp AACTGTCACACAGATGGGGTAGGTGTGGCAATGAATCACAGGGGAGACACCAAGCAACCAAGCGGAAGATaGCCTGGAGGTGCCTGCTGC +
Preference number: 2 (lower is better)
Translates to: NCHTDGVGVAMNHRGDTKQPSGR*PGGACC
Trigger: GCAGCAGGCACCTCCAGGTCATCTTCCGCTTGGTTG...CTTGGTGTCTCCCCTGTGATTCATTGCCACACCTACCCCATCTGTGTGACAGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
3UTR-3UTR GCA 90 bp GGAAACTGTCACACAGATGGGGTAGGTGTGGCAATGAATCACAGGGGAGACACCAAGATGACCTGGAGGTaGCTGCTGCTCACCCAGGAG +
Preference number: 2 (lower is better)
Translates to: GNCHTDGVGVAMNHRGDTKMTWR*LLLTQE
Trigger: CTCCTGGGTGAGCAGCAGGCACCTCCAGGTCATCTT...GGTGTCTCCCCTGTGATTCATTGCCACACCTACCCCATCTGTGTGACAGTTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
3UTR-3UTR GCA 90 bp TGCATTAAAGAGAGAGGGGGTCCTTGCTCTGAAGCCCAGGCTGGCTTTGAACTCAAGATGACCTGGAGGTaGCTGCTGCTCACCCAGGAG +
Preference number: 2 (lower is better)
Translates to: CIKERGGPCSEAQAGFELKMTWR*LLLTQE
Trigger: CTCCTGGGTGAGCAGCAGGCACCTCCAGGTCATCTT...GAGTTCAAAGCCAGCCTGGGCTTCAGAGCAAGGACCCCCTCTCTCTTTAATGCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
3UTR-3UTR CCA 90 bp TGCATTAAAGAGAGAGGGGGTCCTTGCTCTGAAGCCCAGGCTGGCTTTGAACTCAAGCGGAAGATGACCTaGAGGTGCCTGCTGCTCACC +
Preference number: 2 (lower is better)
Translates to: CIKERGGPCSEAQAGFELKRKMT*RCLLLT
Trigger: GGTGAGCAGCAGGCACCTCCAGGTCATCTTCCGCTT...GAGTTCAAAGCCAGCCTGGGCTTCAGAGCAAGGACCCCCTCTCTCTTTAATGCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
3UTR-3UTR GCA 90 bp AACTGTCACACAGATGGGGTAGGTGTGGCAATGAATCACAGGGGAGACACCAAGAAGATGACCTGGAGGTaGCTGCTGCTCACCCAGGAG +
Preference number: 2 (lower is better)
Translates to: NCHTDGVGVAMNHRGDTKKMTWR*LLLTQE
Trigger: CTCCTGGGTGAGCAGCAGGCACCTCCAGGTCATCTT...CTTGGTGTCTCCCCTGTGATTCATTGCCACACCTACCCCATCTGTGTGACAGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
3UTR-3UTR TCA 90 bp AAAACAAAACTTTGTCATCAGCACCCAGAACTTTCCAGGCCTCTGCCAGCTCCACAGGCATGGAGGCCGTaGGGGGCCATAACAGTTCAC +
Preference number: 2 (lower is better)
Translates to: KTKLCHQHPELSRPLPAPQAWRP*GAITVH
Trigger: GTGAACTGTTATGGCCCCTCACGGCCTCCATGCCTG...TGGAGCTGGCAGAGGCCTGGAAAGTTCTGGGTGCTGATGACAAAGTTTTGTTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
3UTR-3UTR TCA 90 bp CAGAACTTTCCAGGCCTCTGCCAGCTCCACTCATTAATTACTTTGGTTTCGCTACAACCAAGCGGAAGATaGCCTGGAGGTGCCTGCTGC +
Preference number: 2 (lower is better)
Translates to: QNFPGLCQLHSLITLVSLQPSGR*PGGACC
Trigger: GCAGCAGGCACCTCCAGGTCATCTTCCGCTTGGTTG...TAGCGAAACCAAAGTAATTAATGAGTGGAGCTGGCAGAGGCCTGGAAAGTTCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
3UTR-3UTR TCA 90 bp AAAGAGAGAGGGGGTCCTTGCTCTGAAGCCCAGGCTGGCTTTGAACTCGACACAGTTCACAGGCAGCAGTaGAACTTCCACTTAAGGCTA +
Preference number: 2 (lower is better)
Translates to: KERGGPCSEAQAGFELDTVHRQQ*NFHLRL
Trigger: TAGCCTTAAGTGGAAGTTTCACTGCTGCCTGTGAAC...TGTGTCGAGTTCAAAGCCAGCCTGGGCTTCAGAGCAAGGACCCCCTCTCTCTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
3UTR-3UTR GCA 90 bp AAAGAGAGAGGGGGTCCTTGCTCTGAAGCCCAGGCTGGCTTTGAACTCGACACAAAGTCACAGTGCGTTTaGCTAGGATGTGCTTCAACC +
Preference number: 2 (lower is better)
Translates to: KERGGPCSEAQAGFELDTKSQCV*LGCAST
Trigger: GGTTGAAGCACATCCTAGGCAAACGCACTGTGACTT...TGTGTCGAGTTCAAAGCCAGCCTGGGCTTCAGAGCAAGGACCCCCTCTCTCTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
3UTR-3UTR GCA 90 bp ACACTCCTGCCTCTGCTCTTGAGTGTCAGGGTGGTGTGCACGTGCTACCATGTTTTGCTCACTATGGACTaGTTCCTGAGACTCATCCTG +
Preference number: 2 (lower is better)
Translates to: TLLPLLLSVRVVCTCYHVLLTMD*FLRLIL
Trigger: CAGGATGAGTCTCAGGAAGCAGTCCATAGTGAGCAA...AACATGGTAGCACGTGCACACCACCCTGACACTCAAGAGCAGAGGCAGGAGTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
3UTR-3UTR CCA 90 bp AAAACAAAACTTTGTCATCAGCACCCAGAACTTTCCAGGCCTCTGCCAGCTCCAAAGCGGAAGATGACCTaGAGGTGCCTGCTGCTCACC +
Preference number: 2 (lower is better)
Translates to: KTKLCHQHPELSRPLPAPKRKMT*RCLLLT
Trigger: GGTGAGCAGCAGGCACCTCCAGGTCATCTTCCGCTT...TGGAGCTGGCAGAGGCCTGGAAAGTTCTGGGTGCTGATGACAAAGTTTTGTTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
3UTR-3UTR TCA 90 bp TGCATTAAAGAGAGAGGGGGTCCTTGCTCTGAAGCCCAGGCTGGCTTTGAACTCGTTCACAGGCAGCAGTaGAACTTCCACTTAAGGCTA +
Preference number: 2 (lower is better)
Translates to: CIKERGGPCSEAQAGFELVHRQQ*NFHLRL
Trigger: TAGCCTTAAGTGGAAGTTTCACTGCTGCCTGTGAAC...GAGTTCAAAGCCAGCCTGGGCTTCAGAGCAAGGACCCCCTCTCTCTTTAATGCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
3UTR-3UTR GCA 90 bp TGCATTAAAGAGAGAGGGGGTCCTTGCTCTGAAGCCCAGGCTGGCTTTGAACTCAAGTCACAGTGCGTTTaGCTAGGATGTGCTTCAACC +
Preference number: 2 (lower is better)
Translates to: CIKERGGPCSEAQAGFELKSQCV*LGCAST
Trigger: GGTTGAAGCACATCCTAGGCAAACGCACTGTGACTT...GAGTTCAAAGCCAGCCTGGGCTTCAGAGCAAGGACCCCCTCTCTCTTTAATGCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
3UTR-3UTR CCA 90 bp CAGAACTTTCCAGGCCTCTGCCAGCTCCACTCATTAATTACTTTGGTTTCGCTAAAGCGGAAGATGACCTaGAGGTGCCTGCTGCTCACC +
Preference number: 2 (lower is better)
Translates to: QNFPGLCQLHSLITLVSLKRKMT*RCLLLT
Trigger: GGTGAGCAGCAGGCACCTCCAGGTCATCTTCCGCTT...TAGCGAAACCAAAGTAATTAATGAGTGGAGCTGGCAGAGGCCTGGAAAGTTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
3UTR-3UTR TCA 90 bp AAAGAGAGAGGGGGTCCTTGCTCTGAAGCCCAGGCTGGCTTTGAACTCGACACATCTGTTCCAGATGCTTaGGAAATAAAGGTGAGCACA +
Preference number: 2 (lower is better)
Translates to: KERGGPCSEAQAGFELDTSVPDA*EIKVST
Trigger: TGTGCTCACCTTTATTTCTCAAGCATCTGGAACAGA...TGTGTCGAGTTCAAAGCCAGCCTGGGCTTCAGAGCAAGGACCCCCTCTCTCTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
3UTR-3UTR GCA 90 bp AAAGAGAGAGGGGGTCCTTGCTCTGAAGCCCAGGCTGGCTTTGAACTCGACACAAGGCTCTGTTCCAGATaGTTGAGAAATAAAGGTGAG +
Preference number: 2 (lower is better)
Translates to: KERGGPCSEAQAGFELDTRLCSR*LRNKGE
Trigger: CTCACCTTTATTTCTCAAGCATCTGGAACAGAGCCT...TGTGTCGAGTTCAAAGCCAGCCTGGGCTTCAGAGCAAGGACCCCCTCTCTCTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
3UTR-3UTR GCA 90 bp AACTGTCACACAGATGGGGTAGGTGTGGCAATGAATCACAGGGGAGACACCAAGTTGCTCACTATGGACTaGTTCCTGAGACTCATCCTG +
Preference number: 2 (lower is better)
Translates to: NCHTDGVGVAMNHRGDTKLLTMD*FLRLIL
Trigger: CAGGATGAGTCTCAGGAAGCAGTCCATAGTGAGCAA...CTTGGTGTCTCCCCTGTGATTCATTGCCACACCTACCCCATCTGTGTGACAGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
3UTR CAA 90 bp CATAGCAGCAGCAGCAGCAACAGCAGGAGGCTCTGTTCCAGATGCTaGAGAAATAAAGGTGAGCACATATGGTCTCATAACTGCCCTATG +
Preference number: 2 (lower is better)
Translates to: HSSSSSNSRRLCSRC*RNKGEHIWSHNCPM
Trigger: CATAGGGCAGTTATGAGACCATATGTGCTCACCTTTATTTCTCAAGCATCTGGAACAGAGCCTCCTGCTGTTGCTGCTGCTGCTGCTATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
3UTR-3UTR TCA 90 bp CTTTGTCATCAGCACCCAGAACTTTCCAGGCCTCTGCCAGCTCCACTCATTAATACAGAGTGTGACAACTaGTCTTGCTTCAAGCCCTTG +
Preference number: 2 (lower is better)
Translates to: LCHQHPELSRPLPAPLINTECDN*SCFKPL
Trigger: CAAGGGCTTGAAGCAAGATCAGTTGTCACACTCTGT...ATTAATGAGTGGAGCTGGCAGAGGCCTGGAAAGTTCTGGGTGCTGATGACAAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
3UTR-3UTR TCA 90 bp AGTAAACTGAAAGGCTTAGCTCTCACATGCACACAGCGTGGGCTGTGGGACACGTCTGTTCCAGATGCTTaGGAAATAAAGGTGAGCACA +
Preference number: 2 (lower is better)
Translates to: SKLKGLALTCTQRGLWDTSVPDA*EIKVST
Trigger: TGTGCTCACCTTTATTTCTCAAGCATCTGGAACAGA...CGTGTCCCACAGCCCACGCTGTGTGCATGTGAGAGCTAAGCCTTTCAGTTTACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
3UTR-3UTR GCA 90 bp GGAAACTGTCACACAGATGGGGTAGGTGTGGCAATGAATCACAGGGGAGACACCAGGCTCTGTTCCAGATaGTTGAGAAATAAAGGTGAG +
Preference number: 2 (lower is better)
Translates to: GNCHTDGVGVAMNHRGDTRLCSR*LRNKGE
Trigger: CTCACCTTTATTTCTCAAGCATCTGGAACAGAGCCT...GGTGTCTCCCCTGTGATTCATTGCCACACCTACCCCATCTGTGTGACAGTTTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
3UTR-3UTR GCA 90 bp ACACTCCTGCCTCTGCTCTTGAGTGTCAGGGTGGTGTGCACGTGCTACCATGTTAGTCTGCAAGAGTATTaGCAGGTTTCACTGACAAAT +
Preference number: 2 (lower is better)
Translates to: TLLPLLLSVRVVCTCYHVSLQEY*QVSLTN
Trigger: ATTTGTCAGTGAAACCTGGCAATACTCTTGCAGACT...AACATGGTAGCACGTGCACACCACCCTGACACTCAAGAGCAGAGGCAGGAGTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
3UTR-3UTR TCA 90 bp CAGAACTTTCCAGGCCTCTGCCAGCTCCACTCATTAATTACTTTGGTTTCGCTAACAGAGTGTGACAACTaGTCTTGCTTCAAGCCCTTG +
Preference number: 2 (lower is better)
Translates to: QNFPGLCQLHSLITLVSLTECDN*SCFKPL
Trigger: CAAGGGCTTGAAGCAAGATCAGTTGTCACACTCTGT...TAGCGAAACCAAAGTAATTAATGAGTGGAGCTGGCAGAGGCCTGGAAAGTTCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
3UTR-3UTR TCA 90 bp CAGAACTTTCCAGGCCTCTGCCAGCTCCACTCATTAATTACTTTGGTTTCGCTAGTTCACAGGCAGCAGTaGAACTTCCACTTAAGGCTA +
Preference number: 2 (lower is better)
Translates to: QNFPGLCQLHSLITLVSLVHRQQ*NFHLRL
Trigger: TAGCCTTAAGTGGAAGTTTCACTGCTGCCTGTGAAC...TAGCGAAACCAAAGTAATTAATGAGTGGAGCTGGCAGAGGCCTGGAAAGTTCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
3UTR-3UTR TCA 90 bp TGCATTAAAGAGAGAGGGGGTCCTTGCTCTGAAGCCCAGGCTGGCTTTGAACTCAAACCCTTCGGACATTaGTTGGTTAATTGTTTGACT +
Preference number: 2 (lower is better)
Translates to: CIKERGGPCSEAQAGFELKPFGH*LVNCLT
Trigger: AGTCAAACAATTAACCAATCAATGTCCGAAGGGTTT...GAGTTCAAAGCCAGCCTGGGCTTCAGAGCAAGGACCCCCTCTCTCTTTAATGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
3UTR-3UTR GCA 90 bp CTTTGTCATCAGCACCCAGAACTTTCCAGGCCTCTGCCAGCTCCACTCATTAATAGGCTCTGTTCCAGATaGTTGAGAAATAAAGGTGAG +
Preference number: 2 (lower is better)
Translates to: LCHQHPELSRPLPAPLINRLCSR*LRNKGE
Trigger: CTCACCTTTATTTCTCAAGCATCTGGAACAGAGCCT...ATTAATGAGTGGAGCTGGCAGAGGCCTGGAAAGTTCTGGGTGCTGATGACAAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
3UTR-3UTR CAA 90 bp AAAGAGAGAGGGGGTCCTTGCTCTGAAGCCCAGGCTGGCTTTGAACTCGACACACTCCTGCCTCTGCTCTaGAGTGTCAGGGTGGTGTGC +
Preference number: 3 (lower is better)
Translates to: KERGGPCSEAQAGFELDTLLPLL*SVRVVC
Trigger: GCACACCACCCTGACACTCAAGAGCAGAGGCAGGAG...TGTGTCGAGTTCAAAGCCAGCCTGGGCTTCAGAGCAAGGACCCCCTCTCTCTTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
3UTR CCA 72 bp TGCCTAGGATGTGCTTCAACCAAGCGGAAGATGACCTaGAGGTGCCTGCTGCTCACCCAGGAGACCAGCACA +
Preference number: 3 (lower is better)
Translates to: CLGCASTKRKMT*RCLLLTQETST
Trigger: TGTGCTGGTCTCCTGGGTGAGCAGCAGGCACCTCCAGGTCATCTTCCGCTTGGTTGAAGCACATCCTAGGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
3UTR GCA 72 bp TGTCTGAGTGAAGTCACAGTGCGTTTGCCTAGGATGTaGTTCAACCAAGCGGAAGATGACCTGGAGGTGCCT +
Preference number: 3 (lower is better)
Translates to: CLSEVTVRLPRM*FNQAEDDLEVP
Trigger: AGGCACCTCCAGGTCATCTTCCGCTTGGTTGAAGCACATCCTAGGCAAACGCACTGTGACTTCACTCAGACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
3UTR CCA 72 bp ACTGGAAGCTGTAGTGGGTGGAAACTGTCACACAGATaGGGTAGGTGTGGCAATGAATCACAGGGGAGACAC +
Preference number: 3 (lower is better)
Translates to: TGSCSGWKLSHR*GRCGNESQGRH
Trigger: GTGTCTCCCCTGTGATTCATTGCCACACCTACCCCATCTGTGTGACAGTTTCCACCCACTACAGCTTCCAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
3UTR-3UTR CAA 90 bp TGCATTAAAGAGAGAGGGGGTCCTTGCTCTGAAGCCCAGGCTGGCTTTGAACTCGAAGTCACAGTGCGTTaGCCTAGGATGTGCTTCAAC +
Preference number: 3 (lower is better)
Translates to: CIKERGGPCSEAQAGFELEVTVR*PRMCFN
Trigger: GTTGAAGCACATCCTAGGCAAACGCACTGTGACTTC...GAGTTCAAAGCCAGCCTGGGCTTCAGAGCAAGGACCCCCTCTCTCTTTAATGCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
3UTR-3UTR CAA 90 bp ACACTCCTGCCTCTGCTCTTGAGTGTCAGGGTGGTGTGCACGTGCTACCATGTTGGGTTTGAAACGGTTTaGAGATGTCTGAGTGAAGTC +
Preference number: 3 (lower is better)
Translates to: TLLPLLLSVRVVCTCYHVGFETV*RCLSEV
Trigger: GACTTCACTCAGACATCTCAAAACCGTTTCAAACCC...AACATGGTAGCACGTGCACACCACCCTGACACTCAAGAGCAGAGGCAGGAGTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
3UTR GCA 72 bp ACGGCAATATCTTGCATTAAAGAGAGAGGGGGTCCTTaGTCTGAAGCCCAGGCTGGCTTTGAACTCGACACA +
Preference number: 3 (lower is better)
Translates to: TAISCIKERGGP*SEAQAGFELDT
Trigger: TGTGTCGAGTTCAAAGCCAGCCTGGGCTTCAGAGCAAGGACCCCCTCTCTCTTTAATGCAAGATATTGCCGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
3UTR TCA 72 bp CTGACCAACTCGCCCAAGAGCACAGAGTGTGACAACTaGTCTTGCTTCAAGCCCTTGTTCATCAGAAGAACC +
Preference number: 3 (lower is better)
Translates to: LTNSPKSTECDN*SCFKPLFIRRT
Trigger: GGTTCTTCTGATGAACAAGGGCTTGAAGCAAGATCAGTTGTCACACTCTGTGCTCTTGGGCGAGTTGGTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
3UTR-3UTR CAA 90 bp AAAACAAAACTTTGTCATCAGCACCCAGAACTTTCCAGGCCTCTGCCAGCTCCAGAAGTCACAGTGCGTTaGCCTAGGATGTGCTTCAAC +
Preference number: 3 (lower is better)
Translates to: KTKLCHQHPELSRPLPAPEVTVR*PRMCFN
Trigger: GTTGAAGCACATCCTAGGCAAACGCACTGTGACTTC...TGGAGCTGGCAGAGGCCTGGAAAGTTCTGGGTGCTGATGACAAAGTTTTGTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
3UTR-3UTR CAA 90 bp TGCATTAAAGAGAGAGGGGGTCCTTGCTCTGAAGCCCAGGCTGGCTTTGAACTCTCTTGCTTCAAGCCCTaGTTCATCAGAAGAACCTTA +
Preference number: 3 (lower is better)
Translates to: CIKERGGPCSEAQAGFELSCFKP*FIRRTL
Trigger: TAAGGTTCTTCTGATGAACAAGGGCTTGAAGCAAGA...GAGTTCAAAGCCAGCCTGGGCTTCAGAGCAAGGACCCCCTCTCTCTTTAATGCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
3UTR TCA 72 bp CCCTTGTTCATCAGAAGAACCTTAAACTATCCCAGCTaGATACGCTGTCCCCCTCATCTCAGTAAAGGCCCT +
Preference number: 3 (lower is better)
Translates to: PLFIRRTLNYPS*IRCPPHLSKGP
Trigger: AGGGCCTTTACTGAGATGAGGGGGACAGCGTATTCAGCTGGGATAGTTTAAGGTTCTTCTGATGAACAAGGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
3UTR-3UTR CAA 90 bp ATTTTACAAAAGAAACAGGCACAGAGGACTGACCAACTCGCCCAAGAGCACAGAGAAGTCACAGTGCGTTaGCCTAGGATGTGCTTCAAC +
Preference number: 3 (lower is better)
Translates to: ILQKKQAQRTDQLAQEHREVTVR*PRMCFN
Trigger: GTTGAAGCACATCCTAGGCAAACGCACTGTGACTTC...TCTGTGCTCTTGGGCGAGTTGGTCAGTCCTCTGTGCCTGTTTCTTTTGTAAAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
3UTR-3UTR CAA 90 bp AAAACAAAACTTTGTCATCAGCACCCAGAACTTTCCAGGCCTCTGCCAGCTCCAGGGTTTGAAACGGTTTaGAGATGTCTGAGTGAAGTC +
Preference number: 3 (lower is better)
Translates to: KTKLCHQHPELSRPLPAPGFETV*RCLSEV
Trigger: GACTTCACTCAGACATCTCAAAACCGTTTCAAACCC...TGGAGCTGGCAGAGGCCTGGAAAGTTCTGGGTGCTGATGACAAAGTTTTGTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
3UTR-3UTR CAA 90 bp CTTTGTCATCAGCACCCAGAACTTTCCAGGCCTCTGCCAGCTCCACTCATTAATTCTTGCTTCAAGCCCTaGTTCATCAGAAGAACCTTA +
Preference number: 3 (lower is better)
Translates to: LCHQHPELSRPLPAPLINSCFKP*FIRRTL
Trigger: TAAGGTTCTTCTGATGAACAAGGGCTTGAAGCAAGA...ATTAATGAGTGGAGCTGGCAGAGGCCTGGAAAGTTCTGGGTGCTGATGACAAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
3UTR TCA 72 bp GCAGCAGCAACAGCAGGAGGCTCTGTTCCAGATGCTTaGGAAATAAAGGTGAGCACATATGGTCTCATAACT +
Preference number: 3 (lower is better)
Translates to: AAATAGGSVPDA*EIKVSTYGLIT
Trigger: AGTTATGAGACCATATGTGCTCACCTTTATTTCTCAAGCATCTGGAACAGAGCCTCCTGCTGTTGCTGCTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
3UTR GCA 72 bp ACACTCCTGCCTCTGCTCTTGAGTGTCAGGGTGGTGTaGACGTGCTACCATGTTTTATTTATTTACTACTTG +
Preference number: 3 (lower is better)
Translates to: TLLPLLLSVRVV*TCYHVLFIYYL
Trigger: CAAGTAGTAAATAAATAAAACATGGTAGCACGTGCACACCACCCTGACACTCAAGAGCAGAGGCAGGAGTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
CDS-3UTR CCA 90 bp CAAGCGGAAGATGACCTGGAGGTGCCTGCTGCTCACCCAGGAGACCAGCACACAGGCCAGCCGGGAAAGTaGCGAGGGCGGCGCCACCAG +
Preference number: 4 (lower is better)
Translates to: QAEDDLEVPAAHPGDQHTGQPGK*RGRRHQ
Trigger: CTGGTGGCGCCGCCCTCGCCACTTTCCCGGCTGGCC...TGTGTGCTGGTCTCCTGGGTGAGCAGCAGGCACCTCCAGGTCATCTTCCGCTTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163163.9
CDS-3UTR GCA 90 bp AAGCGGAAGATGACCTGGAGGTGCCTGCTGCTCACCCAGGAGACCAGCACACAGAGGAGGCAGAGGATCTaGGCTCACTGCCAGCTCACT +
Preference number: 4 (lower is better)
Translates to: KRKMTWRCLLLTQETSTQRRQRI*AHCQLT
Trigger: AGTGAGCTGGCAGTGAGCGCAGATCCTCTGCCTCCT...CTGTGTGCTGGTCTCCTGGGTGAGCAGCAGGCACCTCCAGGTCATCTTCCGCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022137.14
ENSMUST00000225754.2
CDS-3UTR GCA 90 bp CAAGCGGAAGATGACCTGGAGGTGCCTGCTGCTCACCCAGGAGACCAGCACACAGAGGTCTGGTGCCACTaGTGGCTCCTCTGTGTCACT +
Preference number: 4 (lower is better)
Translates to: QAEDDLEVPAAHPGDQHTEVWCH*WLLCVT
Trigger: AGTGACACAGAGGAGCCAGCAGTGGCACCAGACCTC...TGTGTGCTGGTCTCCTGGGTGAGCAGCAGGCACCTCCAGGTCATCTTCCGCTTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022137.14
ENSMUST00000225754.2
CDS-3UTR GCA 90 bp AAGCGGAAGATGACCTGGAGGTGCCTGCTGCTCACCCAGGAGACCAGCACACAGGTAAGGGTGGTGGTTTaGCCTTGCTGGAGAGGCTGG +
Preference number: 4 (lower is better)
Translates to: KRKMTWRCLLLTQETSTQVRVVV*PCWRGW
Trigger: CCAGCCTCTCCAGCAAGGGCAAACCACCACCCTTAC...CTGTGTGCTGGTCTCCTGGGTGAGCAGCAGGCACCTCCAGGTCATCTTCCGCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022137.14
ENSMUST00000225754.2
CDS-3UTR GCA 90 bp CAAGCGGAAGATGACCTGGAGGTGCCTGCTGCTCACCCAGGAGACCAGCACACAGTAAGGGTGGTGGTTTaGCCTTGCTGGAGAGGCTGG +
Preference number: 4 (lower is better)
Translates to: QAEDDLEVPAAHPGDQHTVRVVV*PCWRGW
Trigger: CCAGCCTCTCCAGCAAGGGCAAACCACCACCCTTAC...TGTGTGCTGGTCTCCTGGGTGAGCAGCAGGCACCTCCAGGTCATCTTCCGCTTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022137.14
ENSMUST00000225754.2
CDS-3UTR GCA 90 bp AAGCGGAAGATGACCTGGAGGTGCCTGCTGCTCACCCAGGAGACCAGCACACAGGATTCTCAGCAGGCCTaGCCACGACTTCATGTAGGC +
Preference number: 4 (lower is better)
Translates to: KRKMTWRCLLLTQETSTQDSQQA*PRLHVG
Trigger: GCCTACATGAAGTCGTGGGCAGGCCTGCTGAGAATC...CTGTGTGCTGGTCTCCTGGGTGAGCAGCAGGCACCTCCAGGTCATCTTCCGCTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022137.14
ENSMUST00000225754.2
CDS-3UTR GCA 90 bp CAAGCGGAAGATGACCTGGAGGTGCCTGCTGCTCACCCAGGAGACCAGCACACATTCCTCAGGATGGCCTaGACTTCCGCAGACAGCTCT +
Preference number: 4 (lower is better)
Translates to: QAEDDLEVPAAHPGDQHTFLRMA*TSADSS
Trigger: AGAGCTGTCTGCGGAAGTGCAGGCCATCCTGAGGAA...TGTGTGCTGGTCTCCTGGGTGAGCAGCAGGCACCTCCAGGTCATCTTCCGCTTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
CDS-3UTR TCA 90 bp CAAGCGGAAGATGACCTGGAGGTGCCTGCTGCTCACCCAGGAGACCAGCACACAGCCAGCTCACTGCTGTaGAGAGACTGGAAGGTTCTT +
Preference number: 4 (lower is better)
Translates to: QAEDDLEVPAAHPGDQHTASSLL*RDWKVL
Trigger: AAGAACCTTCCAGTCTCTTCACAGCAGTGAGCTGGC...TGTGTGCTGGTCTCCTGGGTGAGCAGCAGGCACCTCCAGGTCATCTTCCGCTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022137.14
ENSMUST00000225754.2
CDS-3UTR TCA 90 bp ACACTCCTGCCTCTGCTCTTGAGTGTCAGGGTGGTGTGCACGTGCTACCATGTTTGGAGAGGCTGGAGGTaGACACTCCACACCATCGGA +
Preference number: 4 (lower is better)
Translates to: TLLPLLLSVRVVCTCYHVWRGWR*TLHTIG
Trigger: TCCGATGGTGTGGAGTGTTCACCTCCAGCCTCTCCA...AACATGGTAGCACGTGCACACCACCCTGACACTCAAGAGCAGAGGCAGGAGTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022137.14
ENSMUST00000225754.2
CDS-3UTR CCA 90 bp TGCATTAAAGAGAGAGGGGGTCCTTGCTCTGAAGCCCAGGCTGGCTTTGAACTCTACCGGCTTGAGGTCTaGTGCCACTGCTGGCTCCTC +
Preference number: 4 (lower is better)
Translates to: CIKERGGPCSEAQAGFELYRLEV*CHCWLL
Trigger: GAGGAGCCAGCAGTGGCACCAGACCTCAAGCCGGTA...GAGTTCAAAGCCAGCCTGGGCTTCAGAGCAAGGACCCCCTCTCTCTTTAATGCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022137.14
ENSMUST00000225754.2
CDS-3UTR GCA 90 bp AGTAAACTGAAAGGCTTAGCTCTCACATGCACACAGCGTGGGCTGTGGGACACGGAGGTCTGGTGCCACTaGTGGCTCCTCTGTGTCACT +
Preference number: 4 (lower is better)
Translates to: SKLKGLALTCTQRGLWDTEVWCH*WLLCVT
Trigger: AGTGACACAGAGGAGCCAGCAGTGGCACCAGACCTC...CGTGTCCCACAGCCCACGCTGTGTGCATGTGAGAGCTAAGCCTTTCAGTTTACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022137.14
ENSMUST00000225754.2
CDS-3UTR GCA 90 bp ACACTCCTGCCTCTGCTCTTGAGTGTCAGGGTGGTGTGCACGTGCTACCATGTTGATTCTCAGCAGGCCTaGCCACGACTTCATGTAGGC +
Preference number: 4 (lower is better)
Translates to: TLLPLLLSVRVVCTCYHVDSQQA*PRLHVG
Trigger: GCCTACATGAAGTCGTGGGCAGGCCTGCTGAGAATC...AACATGGTAGCACGTGCACACCACCCTGACACTCAAGAGCAGAGGCAGGAGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022137.14
ENSMUST00000225754.2
3UTR CAA 72 bp GCTGGCTTTGAACTCGACACACTCCTGCCTCTGCTCTaGAGTGTCAGGGTGGTGTGCACGTGCTACCATGTT +
Preference number: 4 (lower is better)
Translates to: AGFELDTLLPLL*SVRVVCTCYHV
Trigger: AACATGGTAGCACGTGCACACCACCCTGACACTCAAGAGCAGAGGCAGGAGTGTGTCGAGTTCAAAGCCAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
CDS-3UTR TCA 90 bp ACACTCCTGCCTCTGCTCTTGAGTGTCAGGGTGGTGTGCACGTGCTACCATGTTGCCAGCTCACTGCTGTaGAGAGACTGGAAGGTTCTT +
Preference number: 4 (lower is better)
Translates to: TLLPLLLSVRVVCTCYHVASSLL*RDWKVL
Trigger: AAGAACCTTCCAGTCTCTTCACAGCAGTGAGCTGGC...AACATGGTAGCACGTGCACACCACCCTGACACTCAAGAGCAGAGGCAGGAGTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022137.14
ENSMUST00000225754.2
CDS-3UTR TCA 90 bp AAAGAGAGAGGGGGTCCTTGCTCTGAAGCCCAGGCTGGCTTTGAACTCGACACAATCATTGCAGCTATCTaGCCTCCTTCTACCCGGCAG +
Preference number: 4 (lower is better)
Translates to: KERGGPCSEAQAGFELDTIIAAI*PPSTRQ
Trigger: CTGCCGGGTAGAAGGAGGTCAGATAGCTGCAATGAT...TGTGTCGAGTTCAAAGCCAGCCTGGGCTTCAGAGCAAGGACCCCCTCTCTCTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022137.14
ENSMUST00000225754.2
CDS-3UTR GCA 90 bp ACACTCCTGCCTCTGCTCTTGAGTGTCAGGGTGGTGTGCACGTGCTACCATGTTTCACTGCCAGCTCACTaGTGTGAAGAGACTGGAAGG +
Preference number: 4 (lower is better)
Translates to: TLLPLLLSVRVVCTCYHVSLPAH*CEETGR
Trigger: CCTTCCAGTCTCTTCACAGCAGTGAGCTGGCAGTGA...AACATGGTAGCACGTGCACACCACCCTGACACTCAAGAGCAGAGGCAGGAGTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022137.14
ENSMUST00000225754.2
CDS-3UTR GCA 90 bp TGCATTAAAGAGAGAGGGGGTCCTTGCTCTGAAGCCCAGGCTGGCTTTGAACTCAGGATCTGCGCTCACTaGCAGCTCACTGCTGTGAAG +
Preference number: 4 (lower is better)
Translates to: CIKERGGPCSEAQAGFELRICAH*QLTAVK
Trigger: CTTCACAGCAGTGAGCTGGCAGTGAGCGCAGATCCT...GAGTTCAAAGCCAGCCTGGGCTTCAGAGCAAGGACCCCCTCTCTCTTTAATGCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022137.14
ENSMUST00000225754.2
CDS-3UTR GCA 90 bp AGTAAACTGAAAGGCTTAGCTCTCACATGCACACAGCGTGGGCTGTGGGACACGAGGATCTGCGCTCACTaGCAGCTCACTGCTGTGAAG +
Preference number: 4 (lower is better)
Translates to: SKLKGLALTCTQRGLWDTRICAH*QLTAVK
Trigger: CTTCACAGCAGTGAGCTGGCAGTGAGCGCAGATCCT...CGTGTCCCACAGCCCACGCTGTGTGCATGTGAGAGCTAAGCCTTTCAGTTTACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022137.14
ENSMUST00000225754.2
CDS-3UTR GCA 90 bp CTTTGTCATCAGCACCCAGAACTTTCCAGGCCTCTGCCAGCTCCACTCATTAATCGGCTTGAGGTCTGGTaGCACTGCTGGCTCCTCTGT +
Preference number: 4 (lower is better)
Translates to: LCHQHPELSRPLPAPLINRLEVW*HCWLLC
Trigger: ACAGAGGAGCCAGCAGTGGCACCAGACCTCAAGCCG...ATTAATGAGTGGAGCTGGCAGAGGCCTGGAAAGTTCTGGGTGCTGATGACAAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022137.14
ENSMUST00000225754.2
CDS-3UTR GCA 90 bp CAAGCGGAAGATGACCTGGAGGTGCCTGCTGCTCACCCAGGAGACCAGCACACAAGTCCAAAAGGATGGTaGGGTAATACATGGACATGC +
Preference number: 4 (lower is better)
Translates to: QAEDDLEVPAAHPGDQHTSPKGW*GNTWTC
Trigger: GCATGTCCATGTATTACCGCACCATCCTTTTGGACT...TGTGTGCTGGTCTCCTGGGTGAGCAGCAGGCACCTCCAGGTCATCTTCCGCTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022137.14
ENSMUST00000225754.2
CDS-3UTR GCA 90 bp TGCATTAAAGAGAGAGGGGGTCCTTGCTCTGAAGCCCAGGCTGGCTTTGAACTCTTCCTCAGGATGGCCTaGACTTCCGCAGACAGCTCT +
Preference number: 4 (lower is better)
Translates to: CIKERGGPCSEAQAGFELFLRMA*TSADSS
Trigger: AGAGCTGTCTGCGGAAGTGCAGGCCATCCTGAGGAA...GAGTTCAAAGCCAGCCTGGGCTTCAGAGCAAGGACCCCCTCTCTCTTTAATGCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
CDS-3UTR CCA 90 bp GGAAACTGTCACACAGATGGGGTAGGTGTGGCAATGAATCACAGGGGAGACACCGACAAGACGTGTCCCTaGGAACCTCACTATAGCCCC +
Preference number: 4 (lower is better)
Translates to: GNCHTDGVGVAMNHRGDTDKTCP*EPHYSP
Trigger: GGGGCTATAGTGAGGTTCCCAGGGACACGTCTTGTC...GGTGTCTCCCCTGTGATTCATTGCCACACCTACCCCATCTGTGTGACAGTTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022137.14
ENSMUST00000225754.2
CDS-3UTR CCA 90 bp AAGCGGAAGATGACCTGGAGGTGCCTGCTGCTCACCCAGGAGACCAGCACACAGGTTTTCAGAATGATGTaGGAGCCTGCTCATCACTGT +
Preference number: 4 (lower is better)
Translates to: KRKMTWRCLLLTQETSTQVFRMM*EPAHHC
Trigger: ACAGTGATGAGCAGGCTCCCACATCATTCTGAAAAC...CTGTGTGCTGGTCTCCTGGGTGAGCAGCAGGCACCTCCAGGTCATCTTCCGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
CDS-3UTR GCA 90 bp GGAAACTGTCACACAGATGGGGTAGGTGTGGCAATGAATCACAGGGGAGACACCGGGTCATTTATCTCCTaGTGCTCCAGGAACTCCCGA +
Preference number: 4 (lower is better)
Translates to: GNCHTDGVGVAMNHRGDTGSFIS*CSRNSR
Trigger: TCGGGAGTTCCTGGAGCAGCAGGAGATAAATGACCC...GGTGTCTCCCCTGTGATTCATTGCCACACCTACCCCATCTGTGTGACAGTTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022137.14
ENSMUST00000225754.2
CDS-3UTR CCA 90 bp ACACTCCTGCCTCTGCTCTTGAGTGTCAGGGTGGTGTGCACGTGCTACCATGTTGTACGAAGGGGGTCTTaGGGCCACTGTAGTAATAAC +
Preference number: 4 (lower is better)
Translates to: TLLPLLLSVRVVCTCYHVVRRGS*GHCSNN
Trigger: GTTATTACTACAGTGGCCCCAAGACCCCCTTCGTAC...AACATGGTAGCACGTGCACACCACCCTGACACTCAAGAGCAGAGGCAGGAGTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022137.14
ENSMUST00000225754.2
CDS-3UTR CCA 90 bp AAAGAGAGAGGGGGTCCTTGCTCTGAAGCCCAGGCTGGCTTTGAACTCGACACAGTACGAAGGGGGTCTTaGGGCCACTGTAGTAATAAC +
Preference number: 4 (lower is better)
Translates to: KERGGPCSEAQAGFELDTVRRGS*GHCSNN
Trigger: GTTATTACTACAGTGGCCCCAAGACCCCCTTCGTAC...TGTGTCGAGTTCAAAGCCAGCCTGGGCTTCAGAGCAAGGACCCCCTCTCTCTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000022137.14
ENSMUST00000225754.2
CDS-3UTR CCA 90 bp ACACTCCTGCCTCTGCTCTTGAGTGTCAGGGTGGTGTGCACGTGCTACCATGTTTGGTGCGGTAATACATaGACATGCCAAGCACCAGGA +
Preference number: 4 (lower is better)
Translates to: TLLPLLLSVRVVCTCYHVWCGNT*TCQAPG
Trigger: TCCTGGTGCTTGGCATGTCCATGTATTACCGCACCA...AACATGGTAGCACGTGCACACCACCCTGACACTCAAGAGCAGAGGCAGGAGTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022137.14
ENSMUST00000225754.2
CDS-3UTR CCA 90 bp GGAAACTGTCACACAGATGGGGTAGGTGTGGCAATGAATCACAGGGGAGACACCCAAACTTCCTCAGGATaGCCTGCACTTCCGCAGACA +
Preference number: 4 (lower is better)
Translates to: GNCHTDGVGVAMNHRGDTQTSSG*PALPQT
Trigger: TGTCTGCGGAAGTGCAGGCCATCCTGAGGAAGTTTG...GGTGTCTCCCCTGTGATTCATTGCCACACCTACCCCATCTGTGTGACAGTTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
CDS-3UTR TCA 90 bp AAGCGGAAGATGACCTGGAGGTGCCTGCTGCTCACCCAGGAGACCAGCACACAGCTCTTCATGAATTCTTaGAATTCTCTCGTGTTCCTG +
Preference number: 4 (lower is better)
Translates to: KRKMTWRCLLLTQETSTQLFMNS*NSLVFL
Trigger: CAGGAACACGAGAGAATTTCAAGAATTCATGAAGAG...CTGTGTGCTGGTCTCCTGGGTGAGCAGCAGGCACCTCCAGGTCATCTTCCGCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
CDS-3UTR GCA 90 bp ATTTTACAAAAGAAACAGGCACAGAGGACTGACCAACTCGCCCAAGAGCACAGACGGCTTGAGGTCTGGTaGCACTGCTGGCTCCTCTGT +
Preference number: 4 (lower is better)
Translates to: ILQKKQAQRTDQLAQEHRRLEVW*HCWLLC
Trigger: ACAGAGGAGCCAGCAGTGGCACCAGACCTCAAGCCG...TCTGTGCTCTTGGGCGAGTTGGTCAGTCCTCTGTGCCTGTTTCTTTTGTAAAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022137.14
ENSMUST00000225754.2
CDS-3UTR GCA 90 bp CTTTGTCATCAGCACCCAGAACTTTCCAGGCCTCTGCCAGCTCCACTCATTAATTTCCTCAGGATGGCCTaGACTTCCGCAGACAGCTCT +
Preference number: 4 (lower is better)
Translates to: LCHQHPELSRPLPAPLINFLRMA*TSADSS
Trigger: AGAGCTGTCTGCGGAAGTGCAGGCCATCCTGAGGAA...ATTAATGAGTGGAGCTGGCAGAGGCCTGGAAAGTTCTGGGTGCTGATGACAAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
CDS-3UTR CCA 90 bp CAGAACTTTCCAGGCCTCTGCCAGCTCCACTCATTAATTACTTTGGTTTCGCTATACCGGCTTGAGGTCTaGTGCCACTGCTGGCTCCTC +
Preference number: 4 (lower is better)
Translates to: QNFPGLCQLHSLITLVSLYRLEV*CHCWLL
Trigger: GAGGAGCCAGCAGTGGCACCAGACCTCAAGCCGGTA...TAGCGAAACCAAAGTAATTAATGAGTGGAGCTGGCAGAGGCCTGGAAAGTTCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022137.14
ENSMUST00000225754.2
CDS-3UTR TCA 90 bp AAAACAAAACTTTGTCATCAGCACCCAGAACTTTCCAGGCCTCTGCCAGCTCCAGGCAGACCAGGGCGCTaGCGAGATAAACTATCATGG +
Preference number: 4 (lower is better)
Translates to: KTKLCHQHPELSRPLPAPGRPGR*RDKLSW
Trigger: CCATGATAGTTTATCTCGTCAGCGCCCTGGTCTGCC...TGGAGCTGGCAGAGGCCTGGAAAGTTCTGGGTGCTGATGACAAAGTTTTGTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022137.14
ENSMUST00000225754.2
CDS-3UTR TCA 90 bp ACACTCCTGCCTCTGCTCTTGAGTGTCAGGGTGGTGTGCACGTGCTACCATGTTCAGCTCTTTGTACTCTaGAAACTGGTCTTGGAACAC +
Preference number: 4 (lower is better)
Translates to: TLLPLLLSVRVVCTCYHVQLFVL*KLVLEH
Trigger: GTGTTCCAAGACCAGTTTTCAGAGTACAAAGAGCTG...AACATGGTAGCACGTGCACACCACCCTGACACTCAAGAGCAGAGGCAGGAGTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
CDS-3UTR GCA 90 bp AACTGTCACACAGATGGGGTAGGTGTGGCAATGAATCACAGGGGAGACACCAAGGAATTAAAGGTGCCTTaGGACCCTCTGGAAGGGTCT +
Preference number: 4 (lower is better)
Translates to: NCHTDGVGVAMNHRGDTKELKVP*DPLEGS
Trigger: AGACCCTTCCAGAGGGTCGCAAGGCACCTTTAATTC...CTTGGTGTCTCCCCTGTGATTCATTGCCACACCTACCCCATCTGTGTGACAGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022137.14
ENSMUST00000225754.2
CDS-3UTR CCA 90 bp AGTAAACTGAAAGGCTTAGCTCTCACATGCACACAGCGTGGGCTGTGGGACACGCGTTCACATAGACTATaGCTGCAGCCATGTACAGGA +
Preference number: 4 (lower is better)
Translates to: SKLKGLALTCTQRGLWDTRSHRL*LQPCTG
Trigger: TCCTGTACATGGCTGCAGCCATAGTCTATGTGAACG...CGTGTCCCACAGCCCACGCTGTGTGCATGTGAGAGCTAAGCCTTTCAGTTTACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022137.14
ENSMUST00000225754.2
CDS-3UTR CCA 90 bp GGAAACTGTCACACAGATGGGGTAGGTGTGGCAATGAATCACAGGGGAGACACCCGTTCACATAGACTATaGCTGCAGCCATGTACAGGA +
Preference number: 4 (lower is better)
Translates to: GNCHTDGVGVAMNHRGDTRSHRL*LQPCTG
Trigger: TCCTGTACATGGCTGCAGCCATAGTCTATGTGAACG...GGTGTCTCCCCTGTGATTCATTGCCACACCTACCCCATCTGTGTGACAGTTTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022137.14
ENSMUST00000225754.2
CDS-3UTR CCA 90 bp AAAGAGAGAGGGGGTCCTTGCTCTGAAGCCCAGGCTGGCTTTGAACTCGACACAAGAGTCCACCTCGGTTaGTATCGTTCACATAGACTA +
Preference number: 4 (lower is better)
Translates to: KERGGPCSEAQAGFELDTRVHLG*YRSHRL
Trigger: TAGTCTATGTGAACGATACCAACCGAGGTGGACTCT...TGTGTCGAGTTCAAAGCCAGCCTGGGCTTCAGAGCAAGGACCCCCTCTCTCTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022137.14
ENSMUST00000225754.2
CDS-3UTR CCA 90 bp CTTTGTCATCAGCACCCAGAACTTTCCAGGCCTCTGCCAGCTCCACTCATTAATCAAACTTCCTCAGGATaGCCTGCACTTCCGCAGACA +
Preference number: 4 (lower is better)
Translates to: LCHQHPELSRPLPAPLINQTSSG*PALPQT
Trigger: TGTCTGCGGAAGTGCAGGCCATCCTGAGGAAGTTTG...ATTAATGAGTGGAGCTGGCAGAGGCCTGGAAAGTTCTGGGTGCTGATGACAAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
CDS-3UTR TCA 90 bp TGCATTAAAGAGAGAGGGGGTCCTTGCTCTGAAGCCCAGGCTGGCTTTGAACTCCATCGGAGATGTATCTaGTATCAGACACCGGGTTAT +
Preference number: 4 (lower is better)
Translates to: CIKERGGPCSEAQAGFELHRRCI*YQTPGY
Trigger: ATAACCCGGTGTCTGATATCAGATACATCTCCGATG...GAGTTCAAAGCCAGCCTGGGCTTCAGAGCAAGGACCCCCTCTCTCTTTAATGCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022137.14
ENSMUST00000225754.2
CDS-3UTR TCA 90 bp ATTTTACAAAAGAAACAGGCACAGAGGACTGACCAACTCGCCCAAGAGCACAGAGGCAGACCAGGGCGCTaGCGAGATAAACTATCATGG +
Preference number: 4 (lower is better)
Translates to: ILQKKQAQRTDQLAQEHRGRPGR*RDKLSW
Trigger: CCATGATAGTTTATCTCGTCAGCGCCCTGGTCTGCC...TCTGTGCTCTTGGGCGAGTTGGTCAGTCCTCTGTGCCTGTTTCTTTTGTAAAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022137.14
ENSMUST00000225754.2
CDS-3UTR TCA 90 bp AGTAAACTGAAAGGCTTAGCTCTCACATGCACACAGCGTGGGCTGTGGGACACGTTGACATTAACTTCCTaGTCCCTCTGTCGATCACTG +
Preference number: 4 (lower is better)
Translates to: SKLKGLALTCTQRGLWDTLTLTS*SLCRSL
Trigger: CAGTGATCGACAGAGGGATCAGGAAGTTAATGTCAA...CGTGTCCCACAGCCCACGCTGTGTGCATGTGAGAGCTAAGCCTTTCAGTTTACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
CDS-3UTR TCA 90 bp GGAAACTGTCACACAGATGGGGTAGGTGTGGCAATGAATCACAGGGGAGACACCTTGACATTAACTTCCTaGTCCCTCTGTCGATCACTG +
Preference number: 4 (lower is better)
Translates to: GNCHTDGVGVAMNHRGDTLTLTS*SLCRSL
Trigger: CAGTGATCGACAGAGGGATCAGGAAGTTAATGTCAA...GGTGTCTCCCCTGTGATTCATTGCCACACCTACCCCATCTGTGTGACAGTTTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
CDS-3UTR TCA 90 bp AGTAAACTGAAAGGCTTAGCTCTCACATGCACACAGCGTGGGCTGTGGGACACGCAGCTCTTTGTACTCTaGAAACTGGTCTTGGAACAC +
Preference number: 4 (lower is better)
Translates to: SKLKGLALTCTQRGLWDTQLFVL*KLVLEH
Trigger: GTGTTCCAAGACCAGTTTTCAGAGTACAAAGAGCTG...CGTGTCCCACAGCCCACGCTGTGTGCATGTGAGAGCTAAGCCTTTCAGTTTACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
CDS-3UTR CCA 90 bp ATTTTACAAAAGAAACAGGCACAGAGGACTGACCAACTCGCCCAAGAGCACAGAGACAAGACGTGTCCCTaGGAACCTCACTATAGCCCC +
Preference number: 4 (lower is better)
Translates to: ILQKKQAQRTDQLAQEHRDKTCP*EPHYSP
Trigger: GGGGCTATAGTGAGGTTCCCAGGGACACGTCTTGTC...TCTGTGCTCTTGGGCGAGTTGGTCAGTCCTCTGTGCCTGTTTCTTTTGTAAAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022137.14
ENSMUST00000225754.2
CDS-3UTR CCA 90 bp GGAAACTGTCACACAGATGGGGTAGGTGTGGCAATGAATCACAGGGGAGACACCACTGGAAGGTTCTTATaGTACCATCTGGACAAGACG +
Preference number: 4 (lower is better)
Translates to: GNCHTDGVGVAMNHRGDTTGRFL*YHLDKT
Trigger: CGTCTTGTCCAGATGGTACCATAAGAACCTTCCAGT...GGTGTCTCCCCTGTGATTCATTGCCACACCTACCCCATCTGTGTGACAGTTTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022137.14
ENSMUST00000225754.2
CDS-3UTR CCA 90 bp TGCATTAAAGAGAGAGGGGGTCCTTGCTCTGAAGCCCAGGCTGGCTTTGAACTCCTTCGCTTTCTTCTCTaGAAAATCCACTCTGGCTTC +
Preference number: 4 (lower is better)
Translates to: CIKERGGPCSEAQAGFELLRFLL*KIHSGF
Trigger: GAAGCCAGAGTGGATTTTCCAGAGAAGAAAGCGAAG...GAGTTCAAAGCCAGCCTGGGCTTCAGAGCAAGGACCCCCTCTCTCTTTAATGCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000163163.9
3UTR CAA 72 bp CATCTCAGTAAAGGCCCTCGCGGGTTTGAAACGGTTTaGAGATGTCTGAGTGAAGTCACAGTGCGTTTGCCT +
Preference number: 4 (lower is better)
Translates to: HLSKGPRGFETV*RCLSEVTVRLP
Trigger: AGGCAAACGCACTGTGACTTCACTCAGACATCTCAAAACCGTTTCAAACCCGCGAGGGCCTTTACTGAGATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
CDS-3UTR TCA 90 bp CAGAACTTTCCAGGCCTCTGCCAGCTCCACTCATTAATTACTTTGGTTTCGCTAATCATTGCAGCTATCTaGCCTCCTTCTACCCGGCAG +
Preference number: 4 (lower is better)
Translates to: QNFPGLCQLHSLITLVSLIIAAI*PPSTRQ
Trigger: CTGCCGGGTAGAAGGAGGTCAGATAGCTGCAATGAT...TAGCGAAACCAAAGTAATTAATGAGTGGAGCTGGCAGAGGCCTGGAAAGTTCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022137.14
ENSMUST00000225754.2
CDS-3UTR TCA 90 bp AACTGTCACACAGATGGGGTAGGTGTGGCAATGAATCACAGGGGAGACACCAAGTTGACATTAACTTCCTaGTCCCTCTGTCGATCACTG +
Preference number: 4 (lower is better)
Translates to: NCHTDGVGVAMNHRGDTKLTLTS*SLCRSL
Trigger: CAGTGATCGACAGAGGGATCAGGAAGTTAATGTCAA...CTTGGTGTCTCCCCTGTGATTCATTGCCACACCTACCCCATCTGTGTGACAGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
CDS-3UTR GCA 90 bp AACTGTCACACAGATGGGGTAGGTGTGGCAATGAATCACAGGGGAGACACCAAGAGTCCAAAAGGATGGTaGGGTAATACATGGACATGC +
Preference number: 4 (lower is better)
Translates to: NCHTDGVGVAMNHRGDTKSPKGW*GNTWTC
Trigger: GCATGTCCATGTATTACCGCACCATCCTTTTGGACT...CTTGGTGTCTCCCCTGTGATTCATTGCCACACCTACCCCATCTGTGTGACAGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000022137.14
ENSMUST00000225754.2
CDS-3UTR GCA 90 bp AGTAAACTGAAAGGCTTAGCTCTCACATGCACACAGCGTGGGCTGTGGGACACGCACATAGACTATGGCTaGAGCCATGTACAGGATAAA +
Preference number: 4 (lower is better)
Translates to: SKLKGLALTCTQRGLWDTHIDYG*SHVQDK
Trigger: TTTATCCTGTACATGGCTGCAGCCATAGTCTATGTG...CGTGTCCCACAGCCCACGCTGTGTGCATGTGAGAGCTAAGCCTTTCAGTTTACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022137.14
ENSMUST00000225754.2
CDS-3UTR GCA 90 bp ATTTTACAAAAGAAACAGGCACAGAGGACTGACCAACTCGCCCAAGAGCACAGAGGGTCATTTATCTCCTaGTGCTCCAGGAACTCCCGA +
Preference number: 4 (lower is better)
Translates to: ILQKKQAQRTDQLAQEHRGSFIS*CSRNSR
Trigger: TCGGGAGTTCCTGGAGCAGCAGGAGATAAATGACCC...TCTGTGCTCTTGGGCGAGTTGGTCAGTCCTCTGTGCCTGTTTCTTTTGTAAAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022137.14
ENSMUST00000225754.2
CDS-3UTR CCA 90 bp AACTGTCACACAGATGGGGTAGGTGTGGCAATGAATCACAGGGGAGACACCAAGACTGGAAGGTTCTTATaGTACCATCTGGACAAGACG +
Preference number: 4 (lower is better)
Translates to: NCHTDGVGVAMNHRGDTKTGRFL*YHLDKT
Trigger: CGTCTTGTCCAGATGGTACCATAAGAACCTTCCAGT...CTTGGTGTCTCCCCTGTGATTCATTGCCACACCTACCCCATCTGTGTGACAGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022137.14
ENSMUST00000225754.2
CDS-3UTR CCA 90 bp ATTTTACAAAAGAAACAGGCACAGAGGACTGACCAACTCGCCCAAGAGCACAGACACTTGAGTAGAAGCTaGGGCCGAATGGTGGCTGTA +
Preference number: 4 (lower is better)
Translates to: ILQKKQAQRTDQLAQEHRHLSRS*GRMVAV
Trigger: TACAGCCACCATTCGGCCCCAGCTTCTACTCAAGTG...TCTGTGCTCTTGGGCGAGTTGGTCAGTCCTCTGTGCCTGTTTCTTTTGTAAAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022137.14
ENSMUST00000225754.2
CDS-3UTR CCA 90 bp AACTGTCACACAGATGGGGTAGGTGTGGCAATGAATCACAGGGGAGACACCAAGAGAGTCCACCTCGGTTaGTATCGTTCACATAGACTA +
Preference number: 4 (lower is better)
Translates to: NCHTDGVGVAMNHRGDTKRVHLG*YRSHRL
Trigger: TAGTCTATGTGAACGATACCAACCGAGGTGGACTCT...CTTGGTGTCTCCCCTGTGATTCATTGCCACACCTACCCCATCTGTGTGACAGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022137.14
ENSMUST00000225754.2
CDS-3UTR CCA 90 bp CAGAACTTTCCAGGCCTCTGCCAGCTCCACTCATTAATTACTTTGGTTTCGCTACAAACTTCCTCAGGATaGCCTGCACTTCCGCAGACA +
Preference number: 4 (lower is better)
Translates to: QNFPGLCQLHSLITLVSLQTSSG*PALPQT
Trigger: TGTCTGCGGAAGTGCAGGCCATCCTGAGGAAGTTTG...TAGCGAAACCAAAGTAATTAATGAGTGGAGCTGGCAGAGGCCTGGAAAGTTCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
3UTR CAA 72 bp ACGGTTTTGAGATGTCTGAGTGAAGTCACAGTGCGTTaGCCTAGGATGTGCTTCAACCAAGCGGAAGATGAC +
Preference number: 4 (lower is better)
Translates to: TVLRCLSEVTVR*PRMCFNQAEDD
Trigger: GTCATCTTCCGCTTGGTTGAAGCACATCCTAGGCAAACGCACTGTGACTTCACTCAGACATCTCAAAACCGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
CDS-3UTR TCA 90 bp CTTTGTCATCAGCACCCAGAACTTTCCAGGCCTCTGCCAGCTCCACTCATTAATCAGCTCTTTGTACTCTaGAAACTGGTCTTGGAACAC +
Preference number: 4 (lower is better)
Translates to: LCHQHPELSRPLPAPLINQLFVL*KLVLEH
Trigger: GTGTTCCAAGACCAGTTTTCAGAGTACAAAGAGCTG...ATTAATGAGTGGAGCTGGCAGAGGCCTGGAAAGTTCTGGGTGCTGATGACAAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
CDS-3UTR GCA 90 bp ATTTTACAAAAGAAACAGGCACAGAGGACTGACCAACTCGCCCAAGAGCACAGAGAATTAAAGGTGCCTTaGGACCCTCTGGAAGGGTCT +
Preference number: 4 (lower is better)
Translates to: ILQKKQAQRTDQLAQEHRELKVP*DPLEGS
Trigger: AGACCCTTCCAGAGGGTCGCAAGGCACCTTTAATTC...TCTGTGCTCTTGGGCGAGTTGGTCAGTCCTCTGTGCCTGTTTCTTTTGTAAAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022137.14
ENSMUST00000225754.2
CDS-3UTR CCA 90 bp ATTTTACAAAAGAAACAGGCACAGAGGACTGACCAACTCGCCCAAGAGCACAGATGGTGCGGTAATACATaGACATGCCAAGCACCAGGA +
Preference number: 4 (lower is better)
Translates to: ILQKKQAQRTDQLAQEHRWCGNT*TCQAPG
Trigger: TCCTGGTGCTTGGCATGTCCATGTATTACCGCACCA...TCTGTGCTCTTGGGCGAGTTGGTCAGTCCTCTGTGCCTGTTTCTTTTGTAAAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022137.14
ENSMUST00000225754.2
CDS-3UTR TCA 90 bp AAAACAAAACTTTGTCATCAGCACCCAGAACTTTCCAGGCCTCTGCCAGCTCCACATCGGAGATGTATCTaGTATCAGACACCGGGTTAT +
Preference number: 4 (lower is better)
Translates to: KTKLCHQHPELSRPLPAPHRRCI*YQTPGY
Trigger: ATAACCCGGTGTCTGATATCAGATACATCTCCGATG...TGGAGCTGGCAGAGGCCTGGAAAGTTCTGGGTGCTGATGACAAAGTTTTGTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022137.14
ENSMUST00000225754.2
CDS-3UTR TCA 90 bp AACTGTCACACAGATGGGGTAGGTGTGGCAATGAATCACAGGGGAGACACCAAGCATTTTCCTTTTCGATaGCAACGACGGGTCATTTAT +
Preference number: 4 (lower is better)
Translates to: NCHTDGVGVAMNHRGDTKHFPFR*QRRVIY
Trigger: ATAAATGACCCGTCGTTGTCATCGAAAAGGAAAATG...CTTGGTGTCTCCCCTGTGATTCATTGCCACACCTACCCCATCTGTGTGACAGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
CDS-3UTR TCA 90 bp GGAAACTGTCACACAGATGGGGTAGGTGTGGCAATGAATCACAGGGGAGACACCATTCTTTGCTTTATGTaGGAGAGTTTGTTCTTGAGG +
Preference number: 4 (lower is better)
Translates to: GNCHTDGVGVAMNHRGDTILCFM*ESLFLR
Trigger: CCTCAAGAACAAACTCTCTCACATAAAGCAAAGAAT...GGTGTCTCCCCTGTGATTCATTGCCACACCTACCCCATCTGTGTGACAGTTTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
CDS-3UTR TCA 90 bp CTTTGTCATCAGCACCCAGAACTTTCCAGGCCTCTGCCAGCTCCACTCATTAATCATTTTCCTTTTCGATaGCAACGACGGGTCATTTAT +
Preference number: 4 (lower is better)
Translates to: LCHQHPELSRPLPAPLINHFPFR*QRRVIY
Trigger: ATAAATGACCCGTCGTTGTCATCGAAAAGGAAAATG...ATTAATGAGTGGAGCTGGCAGAGGCCTGGAAAGTTCTGGGTGCTGATGACAAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
CDS-3UTR TCA 90 bp CTTTGTCATCAGCACCCAGAACTTTCCAGGCCTCTGCCAGCTCCACTCATTAATCTCTTCATGAATTCTTaGAATTCTCTCGTGTTCCTG +
Preference number: 4 (lower is better)
Translates to: LCHQHPELSRPLPAPLINLFMNS*NSLVFL
Trigger: CAGGAACACGAGAGAATTTCAAGAATTCATGAAGAG...ATTAATGAGTGGAGCTGGCAGAGGCCTGGAAAGTTCTGGGTGCTGATGACAAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
CDS-3UTR TCA 90 bp AACTGTCACACAGATGGGGTAGGTGTGGCAATGAATCACAGGGGAGACACCAAGATTCTTTGCTTTATGTaGGAGAGTTTGTTCTTGAGG +
Preference number: 4 (lower is better)
Translates to: NCHTDGVGVAMNHRGDTKILCFM*ESLFLR
Trigger: CCTCAAGAACAAACTCTCTCACATAAAGCAAAGAAT...CTTGGTGTCTCCCCTGTGATTCATTGCCACACCTACCCCATCTGTGTGACAGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
CDS-3UTR TCA 90 bp CTTTGTCATCAGCACCCAGAACTTTCCAGGCCTCTGCCAGCTCCACTCATTAATATTCTTTGCTTTATGTaGGAGAGTTTGTTCTTGAGG +
Preference number: 4 (lower is better)
Translates to: LCHQHPELSRPLPAPLINILCFM*ESLFLR
Trigger: CCTCAAGAACAAACTCTCTCACATAAAGCAAAGAAT...ATTAATGAGTGGAGCTGGCAGAGGCCTGGAAAGTTCTGGGTGCTGATGACAAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
CDS-3UTR GCA 90 bp CTCCACTCATTAATTACTTTGGTTTCGCTACTTTGTAAAACCCTTCGGACATTGTCACTGCCAGCTCACTaGTGTGAAGAGACTGGAAGG +
Preference number: 4 (lower is better)
Translates to: LHSLITLVSLLCKTLRTLSLPAH*CEETGR
Trigger: CCTTCCAGTCTCTTCACAGCAGTGAGCTGGCAGTGA...CAATGTCCGAAGGGTTTTACAAAGTAGCGAAACCAAAGTAATTAATGAGTGGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022137.14
ENSMUST00000225754.2
CDS-3UTR GCA 90 bp ATTTTACAAAAGAAACAGGCACAGAGGACTGACCAACTCGCCCAAGAGCACAGACACATAGACTATGGCTaGAGCCATGTACAGGATAAA +
Preference number: 4 (lower is better)
Translates to: ILQKKQAQRTDQLAQEHRHIDYG*SHVQDK
Trigger: TTTATCCTGTACATGGCTGCAGCCATAGTCTATGTG...TCTGTGCTCTTGGGCGAGTTGGTCAGTCCTCTGTGCCTGTTTCTTTTGTAAAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022137.14
ENSMUST00000225754.2
3UTR CAA 72 bp TTTCCAGGCCTCTGCCAGCTCCACTCATTAATTACTTaGGTTTCGCTACTTTGTAAAACCCTTCGGACATTG +
Preference number: 4 (lower is better)
Translates to: FPGLCQLHSLIT*VSLLCKTLRTL
Trigger: CAATGTCCGAAGGGTTTTACAAAGTAGCGAAACCAAAGTAATTAATGAGTGGAGCTGGCAGAGGCCTGGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
CDS-3UTR TCA 90 bp CAGAACTTTCCAGGCCTCTGCCAGCTCCACTCATTAATTACTTTGGTTTCGCTACTCTTCATGAATTCTTaGAATTCTCTCGTGTTCCTG +
Preference number: 4 (lower is better)
Translates to: QNFPGLCQLHSLITLVSLLFMNS*NSLVFL
Trigger: CAGGAACACGAGAGAATTTCAAGAATTCATGAAGAG...TAGCGAAACCAAAGTAATTAATGAGTGGAGCTGGCAGAGGCCTGGAAAGTTCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
CDS-3UTR CCA 90 bp CTCCACTCATTAATTACTTTGGTTTCGCTACTTTGTAAAACCCTTCGGACATTGGTTTTCAGAATGATGTaGGAGCCTGCTCATCACTGT +
Preference number: 4 (lower is better)
Translates to: LHSLITLVSLLCKTLRTLVFRMM*EPAHHC
Trigger: ACAGTGATGAGCAGGCTCCCACATCATTCTGAAAAC...CAATGTCCGAAGGGTTTTACAAAGTAGCGAAACCAAAGTAATTAATGAGTGGAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
CDS-3UTR GCA 90 bp CTCCACTCATTAATTACTTTGGTTTCGCTACTTTGTAAAACCCTTCGGACATTGAAACAGGAAGATCATTaGAGCTATCTGACCTCCTTC +
Preference number: 4 (lower is better)
Translates to: LHSLITLVSLLCKTLRTLKQEDH*SYLTSF
Trigger: GAAGGAGGTCAGATAGCTGCAATGATCTTCCTGTTT...CAATGTCCGAAGGGTTTTACAAAGTAGCGAAACCAAAGTAATTAATGAGTGGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022137.14
ENSMUST00000225754.2
CDS-3UTR TCA 90 bp CTCCACTCATTAATTACTTTGGTTTCGCTACTTTGTAAAACCCTTCGGACATTGCATTTTCCTTTTCGATaGCAACGACGGGTCATTTAT +
Preference number: 4 (lower is better)
Translates to: LHSLITLVSLLCKTLRTLHFPFR*QRRVIY
Trigger: ATAAATGACCCGTCGTTGTCATCGAAAAGGAAAATG...CAATGTCCGAAGGGTTTTACAAAGTAGCGAAACCAAAGTAATTAATGAGTGGAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
CDS GCA 90 bp CCCGCTTCAGCCTGGCCGCGGGAGGGAGGCGGCTCCGGGGATGTGTaGCCAGGGCGAAAGGCCCACCCCGCGGGCTCGGCGTCCCGTCGC +
Preference number: 5 (lower is better)
Translates to: PASAWPREGGGSGDV*PGRKAHPAGSASRR
Trigger: GCGACGGGACGCCGAGCCCGCGGGGTGGGCCTTTCGCCCTGGGCACACATCCCCGGAGCCGCCTCCCTCCCGCGGCCAGGCTGAAGCGGG
79% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000163163.9
CDS CCA 90 bp TCCGCCCCAAGGTGGCCGTTGTCTCGGTCAGGCCAGCCGGGAAAGTaGCGAGGGCGGCGCCACCAGGCGCCCGGAAGGACGGCGGCGGTC +
Preference number: 5 (lower is better)
Translates to: SAPRWPLSRSGQPGK*RGRRHQAPGRTAAV
Trigger: GACCGCCGCCGTCCTTCCGGGCGCCTGGTGGCGCCGCCCTCGCCACTTTCCCGGCTGGCCTGACCGAGACAACGGCCACCTTGGGGCGGA
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163163.9
CDS-3UTR CAA 90 bp CAAGCGGAAGATGACCTGGAGGTGCCTGCTGCTCACCCAGGAGACCAGCACACAGGTGGTGGTTTGCCCTaGCTGGAGAGGCTGGAGGTG +
Preference number: 5 (lower is better)
Translates to: QAEDDLEVPAAHPGDQHTGGGLP*LERLEV
Trigger: CACCTCCAGCCTCTCCAGCAAGGGCAAACCACCACC...TGTGTGCTGGTCTCCTGGGTGAGCAGCAGGCACCTCCAGGTCATCTTCCGCTTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022137.14
ENSMUST00000225754.2
CDS-3UTR CAA 90 bp GGAAACTGTCACACAGATGGGGTAGGTGTGGCAATGAATCACAGGGGAGACACCGGTGGTGGTTTGCCCTaGCTGGAGAGGCTGGAGGTG +
Preference number: 5 (lower is better)
Translates to: GNCHTDGVGVAMNHRGDTGGGLP*LERLEV
Trigger: CACCTCCAGCCTCTCCAGCAAGGGCAAACCACCACC...GGTGTCTCCCCTGTGATTCATTGCCACACCTACCCCATCTGTGTGACAGTTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022137.14
ENSMUST00000225754.2
CDS TCA 90 bp AGCCAAACAAGTTGTACCACTCGTTGTCCTTGTGGATGTAAGCCGTaGCACACGCGAAGACGCCGGCCCCCAGAAGCAGTTCCACCACAC +
Preference number: 5 (lower is better)
Translates to: SQTSCTTRCPCGCKP*HTRRRRPPEAVPPH
Trigger: GTGTGGTGGAACTGCTTCTGGGGGCCGGCGTCTTCGCGTGTGTCACGGCTTACATCCACAAGGACAACGAGTGGTACAACTTGTTTGGCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000168772.2
ENSMUST00000225754.2
CDS-3UTR CAA 90 bp ACACTCCTGCCTCTGCTCTTGAGTGTCAGGGTGGTGTGCACGTGCTACCATGTTTGTAAGGGTGGTGGTTaGCCCTTGCTGGAGAGGCTG +
Preference number: 5 (lower is better)
Translates to: TLLPLLLSVRVVCTCYHVCKGGG*PLLERL
Trigger: CAGCCTCTCCAGCAAGGGCAAACCACCACCCTTACA...AACATGGTAGCACGTGCACACCACCCTGACACTCAAGAGCAGAGGCAGGAGTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022137.14
ENSMUST00000225754.2
CDS-3UTR CAA 90 bp AGTAAACTGAAAGGCTTAGCTCTCACATGCACACAGCGTGGGCTGTGGGACACGTGTAAGGGTGGTGGTTaGCCCTTGCTGGAGAGGCTG +
Preference number: 5 (lower is better)
Translates to: SKLKGLALTCTQRGLWDTCKGGG*PLLERL
Trigger: CAGCCTCTCCAGCAAGGGCAAACCACCACCCTTACA...CGTGTCCCACAGCCCACGCTGTGTGCATGTGAGAGCTAAGCCTTTCAGTTTACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022137.14
ENSMUST00000225754.2
CDS CCA 90 bp GAGACTGGAAGGTTCTTATGGTACCATCTGGACAAGACGTGTCCCTaGGAACCTCACTATAGCCCCTGTCCCGAATCCTGGACCTTGCGT +
Preference number: 5 (lower is better)
Translates to: ETGRFLWYHLDKTCP*EPHYSPCPESWTLR
Trigger: ACGCAAGGTCCAGGATTCGGGACAGGGGCTATAGTGAGGTTCCCAGGGACACGTCTTGTCCAGATGGTACCATAAGAACCTTCCAGTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000168772.2
ENSMUST00000225754.2
CDS TCA 90 bp CCTCTGTCGATCACTGATGGCCGCTTCACACATTTTCCTTTTCGATaGCAACGACGGGTCATTTATCCGGTGCGTGTCCCGCCTTCGCTT +
Preference number: 5 (lower is better)
Translates to: PLSITDGRFTHFPFR*QRRVIYPVRVPPSL
Trigger: AAGCGAAGGCGGGACACGCACCGGATAAATGACCCGTCGTTGTCATCGAAAAGGAAAATGTGTGAAGCGGCCATCAGTGATCGACAGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000163163.9
CDS CCA 90 bp GGAGCCTGCTCATCACTGTGTCCAGCTCGTCAAACTTCCTCAGGATaGCCTGCACTTCCGCAGACAGCTCTTTGTACTCTGAAAACTGGT +
Preference number: 5 (lower is better)
Translates to: GACSSLCPARQTSSG*PALPQTALCTLKTG
Trigger: ACCAGTTTTCAGAGTACAAAGAGCTGTCTGCGGAAGTGCAGGCCATCCTGAGGAAGTTTGACGAGCTGGACACAGTGATGAGCAGGCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000168772.2
ENSMUST00000225754.2
CDS TCA 90 bp CCTCTGTCGATCACTGATGGCCGCTTCACACATTTTCCTTTTCGATaGCAACGACGGGTCATTTATCTCCTGCTGCTCCAGGAACTCCCG +
Preference number: 5 (lower is better)
Translates to: PLSITDGRFTHFPFR*QRRVIYLLLLQELP
Trigger: CGGGAGTTCCTGGAGCAGCAGGAGATAAATGACCCGTCGTTGTCATCGAAAAGGAAAATGTGTGAAGCGGCCATCAGTGATCGACAGAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000168772.2
ENSMUST00000225754.2
CDS GCA 90 bp TCTTGGGGCCACTGTAGTAATAACCCCCATATGTATTGCCGAGGCTaGCGAGACCTCCCATGCCATAGGGCTGTGTATAGCCAAACAAGT +
Preference number: 5 (lower is better)
Translates to: SWGHCSNNPHMYCRG*RDLPCHRAVYSQTS
Trigger: ACTTGTTTGGCTATACACAGCCCTATGGCATGGGAGGTCTCGGCAGCCTCGGCAATACATATGGGGGTTATTACTACAGTGGCCCCAAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000168772.2
ENSMUST00000225754.2
CDS GCA 90 bp CTGCTCATCACTGTGTCCAGCTCGTCAAACTTCCTCAGGATGGCCTaGACTTCCGCAGACAGCTCTTTGTACTCTGAAAACTGGTCTTGG +
Preference number: 5 (lower is better)
Translates to: LLITVSSSSNFLRMA*TSADSSLYSENWSW
Trigger: CCAAGACCAGTTTTCAGAGTACAAAGAGCTGTCTGCGGAAGTGCAGGCCATCCTGAGGAAGTTTGACGAGCTGGACACAGTGATGAGCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000168772.2
ENSMUST00000225754.2
CDS TCA 90 bp CTTCCTCAGGATGGCCTGCACTTCCGCAGACAGCTCTTTGTACTCTaGAAACTGGTCTTGGAACACAGCCTTATAGCGTTCTCGATCGTC +
Preference number: 5 (lower is better)
Translates to: LPQDGLHFRRQLFVL*KLVLEHSLIAFSIV
Trigger: GACGATCGAGAACGCTATAAGGCTGTGTTCCAAGACCAGTTTTCAGAGTACAAAGAGCTGTCTGCGGAAGTGCAGGCCATCCTGAGGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000168772.2
ENSMUST00000225754.2
CDS GCA 90 bp AAATTCTCTCGTGTTCCTGGCGGTTTTCAGAATGATGTGGGAGCCTaGTCATCACTGTGTCCAGCTCGTCAAACTTCCTCAGGATGGCCT +
Preference number: 5 (lower is better)
Translates to: KFSRVPGGFQNDVGA*SSLCPARQTSSGWP
Trigger: AGGCCATCCTGAGGAAGTTTGACGAGCTGGACACAGTGATGAGCAGGCTCCCACATCATTCTGAAAACCGCCAGGAACACGAGAGAATTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000168772.2
ENSMUST00000225754.2
CDS-3UTR CAA 90 bp AGTAAACTGAAAGGCTTAGCTCTCACATGCACACAGCGTGGGCTGTGGGACACGTCCGCAGACAGCTCTTaGTACTCTGAAAACTGGTCT +
Preference number: 5 (lower is better)
Translates to: SKLKGLALTCTQRGLWDTSADSS*YSENWS
Trigger: AGACCAGTTTTCAGAGTACAAAGAGCTGTCTGCGGA...CGTGTCCCACAGCCCACGCTGTGTGCATGTGAGAGCTAAGCCTTTCAGTTTACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
CDS GCA 90 bp AGTAATAACCCCCATATGTATTGCCGAGGCTGCCGAGACCTCCCATaGCATAGGGCTGTGTATAGCCAAACAAGTTGTACCACTCGTTGT +
Preference number: 5 (lower is better)
Translates to: SNNPHMYCRGCRDLP*HRAVYSQTSCTTRC
Trigger: ACAACGAGTGGTACAACTTGTTTGGCTATACACAGCCCTATGGCATGGGAGGTCTCGGCAGCCTCGGCAATACATATGGGGGTTATTACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000168772.2
ENSMUST00000225754.2
CDS GCA 90 bp GTAGCAGAGTCCACCTCGGTTGGTATCGTTCACATAGACTATGGCTaGAGCCATGTACAGGATAAACAACGCAACGTTAACTCCGAACTC +
Preference number: 5 (lower is better)
Translates to: VAESTSVGIVHIDYG*SHVQDKQRNVNSEL
Trigger: GAGTTCGGAGTTAACGTTGCGTTGTTTATCCTGTACATGGCTGCAGCCATAGTCTATGTGAACGATACCAACCGAGGTGGACTCTGCTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000168772.2
ENSMUST00000225754.2
CDS GCA 90 bp GGCGCTGACGAGATAAACTATCATGGTGACAAACAGGAAGATCATTaGAGCTATCTGACCTCCTTCTACCCGGCAGAACATCGCATTCAT +
Preference number: 5 (lower is better)
Translates to: GADEINYHGDKQEDH*SYLTSFYPAEHRIH
Trigger: ATGAATGCGATGTTCTGCCGGGTAGAAGGAGGTCAGATAGCTGCAATGATCTTCCTGTTTGTCACCATGATAGTTTATCTCGTCAGCGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000168772.2
ENSMUST00000225754.2
CDS-3UTR CAA 90 bp ACACTCCTGCCTCTGCTCTTGAGTGTCAGGGTGGTGTGCACGTGCTACCATGTTACTCTTCATGAATTCTaGAAATTCTCTCGTGTTCCT +
Preference number: 5 (lower is better)
Translates to: TLLPLLLSVRVVCTCYHVTLHEF*KFSRVP
Trigger: AGGAACACGAGAGAATTTCAAGAATTCATGAAGAGT...AACATGGTAGCACGTGCACACCACCCTGACACTCAAGAGCAGAGGCAGGAGTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
CDS CCA 90 bp ACCATCGGAGATGTATCTGATATCAGACACCGGGTTATCCCATTCTaGGTCCTTTTTCTTCCCTCTGAAGAAATTTTTCCAGGAGTCGGG +
Preference number: 5 (lower is better)
Translates to: TIGDVSDIRHRVIPF*VLFLPSEEIFPGVG
Trigger: CCCGACTCCTGGAAAAATTTCTTCAGAGGGAAGAAAAAGGACCCAGAATGGGATAACCCGGTGTCTGATATCAGATACATCTCCGATGGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000168772.2
ENSMUST00000225754.2
CDS-3UTR CAA 90 bp GGAAACTGTCACACAGATGGGGTAGGTGTGGCAATGAATCACAGGGGAGACACCACTCTTCATGAATTCTaGAAATTCTCTCGTGTTCCT +
Preference number: 5 (lower is better)
Translates to: GNCHTDGVGVAMNHRGDTTLHEF*KFSRVP
Trigger: AGGAACACGAGAGAATTTCAAGAATTCATGAAGAGT...GGTGTCTCCCCTGTGATTCATTGCCACACCTACCCCATCTGTGTGACAGTTTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
CDS TCA 90 bp GGAGTCATTTTAGTTGTTGTTCTCAAGTCTTTGACATTAACTTCCTaGTCCCTCTGTCGATCACTGATGGCCGCTTCACACATTTTCCTT +
Preference number: 5 (lower is better)
Translates to: GVILVVVLKSLTLTS*SLCRSLMAASHIFL
Trigger: AAGGAAAATGTGTGAAGCGGCCATCAGTGATCGACAGAGGGATCAGGAAGTTAATGTCAAAGACTTGAGAACAACAACTAAAATGACTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000168772.2
ENSMUST00000225754.2
CDS-3UTR CAA 90 bp CAGAACTTTCCAGGCCTCTGCCAGCTCCACTCATTAATTACTTTGGTTTCGCTAACTCTTCATGAATTCTaGAAATTCTCTCGTGTTCCT +
Preference number: 5 (lower is better)
Translates to: QNFPGLCQLHSLITLVSLTLHEF*KFSRVP
Trigger: AGGAACACGAGAGAATTTCAAGAATTCATGAAGAGT...TAGCGAAACCAAAGTAATTAATGAGTGGAGCTGGCAGAGGCCTGGAAAGTTCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000225754.2
CDS GCA 72 bp AAGGACGGCGGCGGTCCAGCCGGCCGCACCTGTCGCTaGAGCGAAACCCGCCCACGCCGCCCCCGGAGCCCG +
Preference number: 6 (lower is better)
Translates to: KDGGGPAGRTCR*SETRPRRPRSP
Trigger: CGGGCTCCGGGGGCGGCGTGGGCGGGTTTCGCTGCAGCGACAGGTGCGGCCGGCTGGACCGCCGCCGTCCTT
79% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000163163.9
CDS CCA 72 bp AGGTGGCCGTTGTCTCGGTCAGGCCAGCCGGGAAAGTaGCGAGGGCGGCGCCACCAGGCGCCCGGAAGGACG +
Preference number: 6 (lower is better)
Translates to: RWPLSRSGQPGK*RGRRHQAPGRT
Trigger: CGTCCTTCCGGGCGCCTGGTGGCGCCGCCCTCGCCACTTTCCCGGCTGGCCTGACCGAGACAACGGCCACCT
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163163.9
CDS GCA 72 bp TGCTCCAGGAACTCCCGATGTCTCCGAGCCGCTTCGTaGCTCCACAGCTTTAGGCAGACCAGGGCGCTGACG +
Preference number: 6 (lower is better)
Translates to: CSRNSRCLRAAS*LHSFRQTRALT
Trigger: CGTCAGCGCCCTGGTCTGCCTAAAGCTGTGGAGGCACGAAGCGGCTCGGAGACATCGGGAGTTCCTGGAGCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000168772.2
ENSMUST00000225754.2
CDS CCA 72 bp CCACTGCTGGCTCCTCTGTGTCACTTGAGTAGAAGCTaGGGCCGAATGGTGGCTGTAATGGGAGAGGGGGAG +
Preference number: 6 (lower is better)
Translates to: PLLAPLCHLSRS*GRMVAVMGEGE
Trigger: CTCCCCCTCTCCCATTACAGCCACCATTCGGCCCCAGCTTCTACTCAAGTGACACAGAGGAGCCAGCAGTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000168772.2
ENSMUST00000225754.2
CDS CCA 72 bp GTCCCGCCTTCGCTTTCTTCTCTGGAAAATCCACTCTaGCTTCCGCCCCAAGGTGGCCGTTGTCTCGGTCAG +
Preference number: 6 (lower is better)
Translates to: VPPSLSSLENPL*LPPQGGRCLGQ
Trigger: CTGACCGAGACAACGGCCACCTTGGGGCGGAAGCCAGAGTGGATTTTCCAGAGAAGAAAGCGAAGGCGGGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000163163.9
CDS CCA 72 bp TTTATCCGGTGCGTGTCCCGCCTTCGCTTTCTTCTCTaGAAAATCCACTCTGGCTTCCGCCCCAAGGTGGCC +
Preference number: 6 (lower is better)
Translates to: FIRCVSRLRFLL*KIHSGFRPKVA
Trigger: GGCCACCTTGGGGCGGAAGCCAGAGTGGATTTTCCAGAGAAGAAAGCGAAGGCGGGACACGCACCGGATAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000163163.9
CDS CAA 72 bp GCGACCCTCTGGAAGGGTCTTTGTAAGGGTGGTGGTTaGCCCTTGCTGGAGAGGCTGGAGGTGAACACTCCA +
Preference number: 6 (lower is better)
Translates to: ATLWKGLCKGGG*PLLERLEVNTP
Trigger: TGGAGTGTTCACCTCCAGCCTCTCCAGCAAGGGCAAACCACCACCCTTACAAAGACCCTTCCAGAGGGTCGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000168772.2
ENSMUST00000225754.2
CDS TCA 72 bp TTTTCCAGGAGTCGGGAACAAAGCGTCTTACCGGCTTaGGGTCTGGTGCCACTGCTGGCTCCTCTGTGTCAC +
Preference number: 6 (lower is better)
Translates to: FSRSREQSVLPA*GLVPLLAPLCH
Trigger: GTGACACAGAGGAGCCAGCAGTGGCACCAGACCTCAAGCCGGTAAGACGCTTTGTTCCCGACTCCTGGAAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000168772.2
ENSMUST00000225754.2
CDS TCA 72 bp AGTTGTACCACTCGTTGTCCTTGTGGATGTAAGCCGTaGCACACGCGAAGACGCCGGCCCCCAGAAGCAGTT +
Preference number: 6 (lower is better)
Translates to: SCTTRCPCGCKP*HTRRRRPPEAV
Trigger: AACTGCTTCTGGGGGCCGGCGTCTTCGCGTGTGTCACGGCTTACATCCACAAGGACAACGAGTGGTACAACT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000168772.2
ENSMUST00000225754.2
CDS GCA 72 bp AAGCAGTTCCACCACACCCAGGATTCTCAGCAGGCCTaGCCACGACTTCATGTAGGCGTAGCGCAGATTGTA +
Preference number: 6 (lower is better)
Translates to: KQFHHTQDSQQA*PRLHVGVAQIV
Trigger: TACAATCTGCGCTACGCCTACATGAAGTCGTGGGCAGGCCTGCTGAGAATCCTGGGTGTGGTGGAACTGCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000168772.2
ENSMUST00000225754.2
CDS GCA 72 bp TCTTGGGGCCACTGTAGTAATAACCCCCATATGTATTaGCGAGGCTGCCGAGACCTCCCATGCCATAGGGCT +
Preference number: 6 (lower is better)
Translates to: SWGHCSNNPHMY*RGCRDLPCHRA
Trigger: AGCCCTATGGCATGGGAGGTCTCGGCAGCCTCGGCAATACATATGGGGGTTATTACTACAGTGGCCCCAAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000168772.2
ENSMUST00000225754.2
CDS GCA 72 bp CTTTTCGATGACAACGACGGGTCATTTATCTCCTGCTaGTCCAGGAACTCCCGATGTCTCCGAGCCGCTTCG +
Preference number: 6 (lower is better)
Translates to: LFDDNDGSFISC*SRNSRCLRAAS
Trigger: CGAAGCGGCTCGGAGACATCGGGAGTTCCTGGAGCAGCAGGAGATAAATGACCCGTCGTTGTCATCGAAAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000168772.2
ENSMUST00000225754.2
CDS CAA 72 bp TTTTTCCAGGAGTCGGGAACAAAGCGTCTTACCGGCTaGAGGTCTGGTGCCACTGCTGGCTCCTCTGTGTCA +
Preference number: 6 (lower is better)
Translates to: FFQESGTKRLTG*RSGATAGSSVS
Trigger: TGACACAGAGGAGCCAGCAGTGGCACCAGACCTCAAGCCGGTAAGACGCTTTGTTCCCGACTCCTGGAAAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000168772.2
ENSMUST00000225754.2
CDS CAA 72 bp CATGGCATCTGCCTCGTGCTGGGAATTAAAGGTGCCTaGCGACCCTCTGGAAGGGTCTTTGTAAGGGTGGTG +
Preference number: 6 (lower is better)
Translates to: HGICLVLGIKGA*RPSGRVFVRVV
Trigger: CACCACCCTTACAAAGACCCTTCCAGAGGGTCGCAAGGCACCTTTAATTCCCAGCACGAGGCAGATGCCATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000168772.2
ENSMUST00000225754.2
CDS GCA 72 bp CCCCATATGTATTGCCGAGGCTGCCGAGACCTCCCATaGCATAGGGCTGTGTATAGCCAAACAAGTTGTACC +
Preference number: 6 (lower is better)
Translates to: PHMYCRGCRDLP*HRAVYSQTSCT
Trigger: GGTACAACTTGTTTGGCTATACACAGCCCTATGGCATGGGAGGTCTCGGCAGCCTCGGCAATACATATGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000168772.2
ENSMUST00000225754.2
CDS CCA 72 bp AGGTTCTTATGGTACCATCTGGACAAGACGTGTCCCTaGGAACCTCACTATAGCCCCTGTCCCGAATCCTGG +
Preference number: 6 (lower is better)
Translates to: RFLWYHLDKTCP*EPHYSPCPESW
Trigger: CCAGGATTCGGGACAGGGGCTATAGTGAGGTTCCCAGGGACACGTCTTGTCCAGATGGTACCATAAGAACCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000168772.2
ENSMUST00000225754.2
CDS GCA 72 bp CACTGTAGTAATAACCCCCATATGTATTGCCGAGGCTaGCGAGACCTCCCATGCCATAGGGCTGTGTATAGC +
Preference number: 6 (lower is better)
Translates to: HCSNNPHMYCRG*RDLPCHRAVYS
Trigger: GCTATACACAGCCCTATGGCATGGGAGGTCTCGGCAGCCTCGGCAATACATATGGGGGTTATTACTACAGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000168772.2
ENSMUST00000225754.2
CDS GCA 72 bp CGTGTTCCTGGCGGTTTTCAGAATGATGTGGGAGCCTaGTCATCACTGTGTCCAGCTCGTCAAACTTCCTCA +
Preference number: 6 (lower is better)
Translates to: RVPGGFQNDVGA*SSLCPARQTSS
Trigger: TGAGGAAGTTTGACGAGCTGGACACAGTGATGAGCAGGCTCCCACATCATTCTGAAAACCGCCAGGAACACG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000168772.2
ENSMUST00000225754.2
CDS CCA 72 bp AAGCCAATCCAGCCACCACGAGTACGAAGGGGGTCTTaGGGCCACTGTAGTAATAACCCCCATATGTATTGC +
Preference number: 6 (lower is better)
Translates to: KPIQPPRVRRGS*GHCSNNPHMYC
Trigger: GCAATACATATGGGGGTTATTACTACAGTGGCCCCAAGACCCCCTTCGTACTCGTGGTGGCTGGATTGGCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000168772.2
ENSMUST00000225754.2
CDS CCA 72 bp TCATCACTGTGTCCAGCTCGTCAAACTTCCTCAGGATaGCCTGCACTTCCGCAGACAGCTCTTTGTACTCTG +
Preference number: 6 (lower is better)
Translates to: SSLCPARQTSSG*PALPQTALCTL
Trigger: CAGAGTACAAAGAGCTGTCTGCGGAAGTGCAGGCCATCCTGAGGAAGTTTGACGAGCTGGACACAGTGATGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000168772.2
ENSMUST00000225754.2
CDS TCA 72 bp CTGGAGGTGAACACTCCACACCATCGGAGATGTATCTaGTATCAGACACCGGGTTATCCCATTCTGGGTCCT +
Preference number: 6 (lower is better)
Translates to: LEVNTPHHRRCI*YQTPGYPILGP
Trigger: AGGACCCAGAATGGGATAACCCGGTGTCTGATATCAGATACATCTCCGATGGTGTGGAGTGTTCACCTCCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000168772.2
ENSMUST00000225754.2
CDS TCA 72 bp CTTGAAATTCTCTCGTGTTCCTGGCGGTTTTCAGAATaGTGTGGGAGCCTGCTCATCACTGTGTCCAGCTCG +
Preference number: 6 (lower is better)
Translates to: LEILSCSWRFSE*CGSLLITVSSS
Trigger: CGAGCTGGACACAGTGATGAGCAGGCTCCCACATCATTCTGAAAACCGCCAGGAACACGAGAGAATTTCAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000168772.2
ENSMUST00000225754.2
CDS TCA 72 bp ATCACTGATGGCCGCTTCACACATTTTCCTTTTCGATaGCAACGACGGGTCATTTATCCGGTGCGTGTCCCG +
Preference number: 6 (lower is better)
Translates to: ITDGRFTHFPFR*QRRVIYPVRVP
Trigger: CGGGACACGCACCGGATAAATGACCCGTCGTTGTCATCGAAAAGGAAAATGTGTGAAGCGGCCATCAGTGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000163163.9
CDS GCA 72 bp ATCACGATAGGCTTCGGAATGTGGCCGGGAGGGATGTaGCCACTCAACAGCTCAGGAGTCATTTTAGTTGTT +
Preference number: 6 (lower is better)
Translates to: ITIGFGMWPGGM*PLNSSGVILVV
Trigger: AACAACTAAAATGACTCCTGAGCTGTTGAGTGGGCACATCCCTCCCGGCCACATTCCGAAGCCTATCGTGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000168772.2
ENSMUST00000225754.2
CDS GCA 72 bp ACTGTGTCCAGCTCGTCAAACTTCCTCAGGATGGCCTaGACTTCCGCAGACAGCTCTTTGTACTCTGAAAAC +
Preference number: 6 (lower is better)
Translates to: TVSSSSNFLRMA*TSADSSLYSEN
Trigger: GTTTTCAGAGTACAAAGAGCTGTCTGCGGAAGTGCAGGCCATCCTGAGGAAGTTTGACGAGCTGGACACAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000168772.2
ENSMUST00000225754.2
CDS GCA 72 bp TTCCTTTTCGATGACAACGACGGGTCATTTATCCGGTaGGTGTCCCGCCTTCGCTTTCTTCTCTGGAAAATC +
Preference number: 6 (lower is better)
Translates to: FLFDDNDGSFIR*VSRLRFLLWKI
Trigger: GATTTTCCAGAGAAGAAAGCGAAGGCGGGACACGCACCGGATAAATGACCCGTCGTTGTCATCGAAAAGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000163163.9
CDS CCA 72 bp AATTCTCTCGTGTTCCTGGCGGTTTTCAGAATGATGTaGGAGCCTGCTCATCACTGTGTCCAGCTCGTCAAA +
Preference number: 6 (lower is better)
Translates to: NSLVFLAVFRMM*EPAHHCVQLVK
Trigger: TTTGACGAGCTGGACACAGTGATGAGCAGGCTCCCACATCATTCTGAAAACCGCCAGGAACACGAGAGAATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000168772.2
ENSMUST00000225754.2
CDS TCA 72 bp ATCACTGATGGCCGCTTCACACATTTTCCTTTTCGATaGCAACGACGGGTCATTTATCTCCTGCTGCTCCAG +
Preference number: 6 (lower is better)
Translates to: ITDGRFTHFPFR*QRRVIYLLLLQ
Trigger: CTGGAGCAGCAGGAGATAAATGACCCGTCGTTGTCATCGAAAAGGAAAATGTGTGAAGCGGCCATCAGTGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000168772.2
ENSMUST00000225754.2
CDS GCA 72 bp TCCACCTCGGTTGGTATCGTTCACATAGACTATGGCTaGAGCCATGTACAGGATAAACAACGCAACGTTAAC +
Preference number: 6 (lower is better)
Translates to: STSVGIVHIDYG*SHVQDKQRNVN
Trigger: GTTAACGTTGCGTTGTTTATCCTGTACATGGCTGCAGCCATAGTCTATGTGAACGATACCAACCGAGGTGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000168772.2
ENSMUST00000225754.2
CDS TCA 72 bp ATCATGGTGACAAACAGGAAGATCATTGCAGCTATCTaGCCTCCTTCTACCCGGCAGAACATCGCATTCATT +
Preference number: 6 (lower is better)
Translates to: IMVTNRKIIAAI*PPSTRQNIAFI
Trigger: AATGAATGCGATGTTCTGCCGGGTAGAAGGAGGTCAGATAGCTGCAATGATCTTCCTGTTTGTCACCATGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000168772.2
ENSMUST00000225754.2
CDS TCA 72 bp TTAGTTGTTGTTCTCAAGTCTTTGACATTAACTTCCTaGTCCCTCTGTCGATCACTGATGGCCGCTTCACAC +
Preference number: 6 (lower is better)
Translates to: LVVVLKSLTLTS*SLCRSLMAASH
Trigger: GTGTGAAGCGGCCATCAGTGATCGACAGAGGGATCAGGAAGTTAATGTCAAAGACTTGAGAACAACAACTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000168772.2
ENSMUST00000225754.2
CDS GCA 72 bp GAGATAAACTATCATGGTGACAAACAGGAAGATCATTaGAGCTATCTGACCTCCTTCTACCCGGCAGAACAT +
Preference number: 6 (lower is better)
Translates to: EINYHGDKQEDH*SYLTSFYPAEH
Trigger: ATGTTCTGCCGGGTAGAAGGAGGTCAGATAGCTGCAATGATCTTCCTGTTTGTCACCATGATAGTTTATCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022137.14
ENSMUST00000168772.2
ENSMUST00000225754.2
CDS CAA 90 bp ACCTTGCGTATCCCAATTCATCACTTTATCGTATTCTTGAATTCTTaGCTTTATGTGAGAGAGTTTGTTCTTGAGGTAATCGCAACGCTC +
Preference number: 6 (lower is better)
Translates to: TLRIPIHHFIVFLNS*LYVREFVLEVIATL
Trigger: GAGCGTTGCGATTACCTCAAGAACAAACTCTCTCACATAAAGCAAAGAATTCAAGAATACGATAAAGTGATGAATTGGGATACGCAAGGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000168772.2
ENSMUST00000225754.2
CDS CAA 90 bp CTAGGGATAACCTTGCGTATCCCAATTCATCACTTTATCGTATTCTaGAATTCTTTGCTTTATGTGAGAGAGTTTGTTCTTGAGGTAATC +
Preference number: 6 (lower is better)
Translates to: LGITLRIPIHHFIVF*NSLLYVREFVLEVI
Trigger: GATTACCTCAAGAACAAACTCTCTCACATAAAGCAAAGAATTCAAGAATACGATAAAGTGATGAATTGGGATACGCAAGGTTATCCCTAG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000168772.2
ENSMUST00000225754.2
CDS CAA 72 bp ACCTTGCGTATCCCAATTCATCACTTTATCGTATTCTaGAATTCTTTGCTTTATGTGAGAGAGTTTGTTCTT +
Preference number: 6 (lower is better)
Translates to: TLRIPIHHFIVF*NSLLYVREFVL
Trigger: AAGAACAAACTCTCTCACATAAAGCAAAGAATTCAAGAATACGATAAAGTGATGAATTGGGATACGCAAGGT
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022137.14
ENSMUST00000163163.9
ENSMUST00000168772.2
ENSMUST00000225754.2