RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MARS1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000040354

Ensembl transcript IDs: ENSMUST00000037290.12, ENSMUST00000134778.3, ENSMUST00000171564.8

Found 187 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR TCA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGTCAGGAGGCGGGGGCTaGGGCTGTGGCTGTTTCTGG +
Preference number: 4 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQSGGGG*GCGCFW
Trigger: CCAGAAACAGCCACAGCCTCAGCCCCCGCCTCCTGA...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR TCA 90 bp GTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCTTCAGGAGGCGGGGGCTaGGGCTGTGGCTGTTTCTGG +
Preference number: 4 (lower is better)
Translates to: VHCLLLSMSSKVTLCQQPSGGGG*GCGCFW
Trigger: CCAGAAACAGCCACAGCCTCAGCCCCCGCCTCCTGA...AGGCTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR TCA 90 bp GTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCTGGGGAGCCTTTAGCCTaGCCCCCTCCAAAGCGCTGC +
Preference number: 4 (lower is better)
Translates to: VHCLLLSMSSKVTLCQQPGEPLA*PPPKRC
Trigger: GCAGCGCTTTGGAGGGGGTCAGGCTAAAGGCTCCCC...AGGCTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037290.12
CDS-3UTR TCA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGGTCTCTGCAGCTCGCTaGCACGGTTCCTGGGTACTC +
Preference number: 4 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQVSAAR*HGSWVL
Trigger: GAGTACCCAGGAACCGTGTCAGCGAGCTGCAGAGAC...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR TCA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCTCCAGCTCGTTGCTaGCAGTTCTCCCCTCAGGAG +
Preference number: 4 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQPPARC*QFSPQE
Trigger: CTCCTGAGGGGAGAACTGTCAGCAACGAGCTGGAGG...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR TCA 90 bp GTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCTCCTCCAGCTCGTTGCTaGCAGTTCTCCCCTCAGGAG +
Preference number: 4 (lower is better)
Translates to: VHCLLLSMSSKVTLCQQPPPARC*QFSPQE
Trigger: CTCCTGAGGGGAGAACTGTCAGCAACGAGCTGGAGG...AGGCTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR TCA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGGGTGGGGGACATTGTTaGCATAGGGGAGGGCACTGG +
Preference number: 4 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQGGGHC*HRGGHW
Trigger: CCAGTGCCCTCCCCTATGTCAACAATGTCCCCCACC...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR TCA 90 bp GTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCTGGTGGGGGACATTGTTaGCATAGGGGAGGGCACTGG +
Preference number: 4 (lower is better)
Translates to: VHCLLLSMSSKVTLCQQPGGGHC*HRGGHW
Trigger: CCAGTGCCCTCCCCTATGTCAACAATGTCCCCCACC...AGGCTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR GCA 90 bp GTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCTAGCTTGTGGCAAGGATaGGGCAGGCTGCAGGTGGGA +
Preference number: 4 (lower is better)
Translates to: VHCLLLSMSSKVTLCQQPSLWQG*GRLQVG
Trigger: TCCCACCTGCAGCCTGCCGCATCCTTGCCACAAGCT...AGGCTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS-3UTR GCA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGGTGCTGCGAGCCTGCTaGTGTAACTGCCTCCACAGC +
Preference number: 4 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQVLRAC*CNCLHS
Trigger: GCTGTGGAGGCAGTTACAGCAGCAGGCTCGCAGCAC...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS-3UTR GCA 90 bp GTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCTGTGCTGCGAGCCTGCTaGTGTAACTGCCTCCACAGC +
Preference number: 4 (lower is better)
Translates to: VHCLLLSMSSKVTLCQQPVLRAC*CNCLHS
Trigger: GCTGTGGAGGCAGTTACAGCAGCAGGCTCGCAGCAC...AGGCTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS-3UTR CCA 90 bp GTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCTCGGGGGCTGAGGCTGTaGCTGTTTCTGGAGGTACAG +
Preference number: 4 (lower is better)
Translates to: VHCLLLSMSSKVTLCQQPRGLRL*LFLEVQ
Trigger: CTGTACCTCCAGAAACAGCCACAGCCTCAGCCCCCG...AGGCTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR TCA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGAAGGACTCTTCTAGCTaGCCCCCTCCAAAGCGCTGC +
Preference number: 4 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQKDSSS*PPPKRC
Trigger: GCAGCGCTTTGGAGGGGGTCAGCTAGAAGAGTCCTT...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS-3UTR TCA 90 bp GTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCTAAGGACTCTTCTAGCTaGCCCCCTCCAAAGCGCTGC +
Preference number: 4 (lower is better)
Translates to: VHCLLLSMSSKVTLCQQPKDSSS*PPPKRC
Trigger: GCAGCGCTTTGGAGGGGGTCAGCTAGAAGAGTCCTT...AGGCTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS-3UTR GCA 90 bp GTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCTCGCTCACACCGAAGCTaGTCCACAGTATCTCGCAGC +
Preference number: 4 (lower is better)
Translates to: VHCLLLSMSSKVTLCQQPRSHRS*STVSRS
Trigger: GCTGCGAGATACTGTGGAGCAGCTTCGGTGTGAGCG...AGGCTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR GCA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCATGTTCACTGCCATaGCTGTCACTGTGCCTGCCC +
Preference number: 4 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQPCSLP*LSLCLP
Trigger: GGGCAGGCACAGTGACAGGCATGGCAGTGAACATGG...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS-3UTR GCA 90 bp GTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCTGGCAGCCATGTTCACTaGCATGCCTGTCACTGTGCC +
Preference number: 4 (lower is better)
Translates to: VHCLLLSMSSKVTLCQQPGSHVH*HACHCA
Trigger: GGCACAGTGACAGGCATGGCAGTGAACATGGCTGCC...AGGCTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS-3UTR GCA 90 bp GTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCTGCCTGCTGCTGTAACTaGCTCCACAGCTGCTGGCTT +
Preference number: 4 (lower is better)
Translates to: VHCLLLSMSSKVTLCQQPACCCN*LHSCWL
Trigger: AAGCCAGCAGCTGTGGAGGCAGTTACAGCAGCAGGC...AGGCTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS-3UTR GCA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGGCCTGCTGCTGTAACTaGCTCCACAGCTGCTGGCTT +
Preference number: 4 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQACCCN*LHSCWL
Trigger: AAGCCAGCAGCTGTGGAGGCAGTTACAGCAGCAGGC...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS-3UTR CCA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGTTAGGCCCTCCTCCATaGCCTTGGTCTCTGTCGCAG +
Preference number: 4 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQLGPPP*PWSLSQ
Trigger: CTGCGACAGAGACCAAGGCCATGGAGGAGGGCCTAA...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR TCA 90 bp GTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCTCCAGCCACTGGTTGGTaGGATCATCTTGTTCCCAGC +
Preference number: 4 (lower is better)
Translates to: VHCLLLSMSSKVTLCQQPPATGW*DHLVPS
Trigger: GCTGGGAACAAGATGATCTCACCAACCAGTGGCTGG...AGGCTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR TCA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCAGCCACTGGTTGGTaGGATCATCTTGTTCCCAGC +
Preference number: 4 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQPATGW*DHLVPS
Trigger: GCTGGGAACAAGATGATCTCACCAACCAGTGGCTGG...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR TCA 90 bp GTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCTTGTATGGCTGCAGCATaGCAGACAGCAAGGCAGCCA +
Preference number: 4 (lower is better)
Translates to: VHCLLLSMSSKVTLCQQPCMAAA*QTARQP
Trigger: TGGCTGCCTTGCTGTCTGTCATGCTGCAGCCATACA...AGGCTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS-3UTR CCA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGGGCAGCAGACAGAACTaGCTGCAGTTCTGTTGCCTC +
Preference number: 4 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQGSRQN*LQFCCL
Trigger: GAGGCAACAGAACTGCAGCCAGTTCTGTCTGCTGCC...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR CCA 90 bp GTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCTAACACTGGATGCTGCTaGAGCTTTAGCGGAGGCAGG +
Preference number: 4 (lower is better)
Translates to: VHCLLLSMSSKVTLCQQPNTGCC*SFSGGR
Trigger: CCTGCCTCCGCTAAAGCTCCAGCAGCATCCAGTGTT...AGGCTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR CCA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGAACACTGGATGCTGCTaGAGCTTTAGCGGAGGCAGG +
Preference number: 4 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQNTGCC*SFSGGR
Trigger: CCTGCCTCCGCTAAAGCTCCAGCAGCATCCAGTGTT...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR CCA 90 bp GTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCTGAGAAGGCACTGTCCTaGCCCTCAGGCCGAATGTAT +
Preference number: 4 (lower is better)
Translates to: VHCLLLSMSSKVTLCQQPEKALS*PSGRMY
Trigger: ATACATTCGGCCTGAGGGCCAGGACAGTGCCTTCTC...AGGCTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR CCA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGGAGAAGGCACTGTCCTaGCCCTCAGGCCGAATGTAT +
Preference number: 4 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQEKALS*PSGRMY
Trigger: ATACATTCGGCCTGAGGGCCAGGACAGTGCCTTCTC...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR CCA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGAGTTCCCAAGAGACATaGGCCACCAGGCGTCTGTCA +
Preference number: 4 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQSSQET*ATRRLS
Trigger: TGACAGACGCCTGGTGGCCCATGTCTCTTGGGAACT...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR CCA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGAGCTGCAGCTGGGTCTaGATGGTAGAGCTGACTGTG +
Preference number: 4 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQSCSWV*MVELTV
Trigger: CACAGTCAGCTCTACCATCCAGACCCAGCTGCAGCT...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS-3UTR CCA 90 bp GTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCTAGCTGCAGCTGGGTCTaGATGGTAGAGCTGACTGTG +
Preference number: 4 (lower is better)
Translates to: VHCLLLSMSSKVTLCQQPSCSWV*MVELTV
Trigger: CACAGTCAGCTCTACCATCCAGACCCAGCTGCAGCT...AGGCTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS-3UTR TCA 90 bp GTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCTGGAAGATGTCCTGGGTaGTTTTGGTCTGCTGAGGAG +
Preference number: 4 (lower is better)
Translates to: VHCLLLSMSSKVTLCQQPGRCPG*FWSAEE
Trigger: CTCCTCAGCAGACCAAAATCACCCAGGACATCTTCC...AGGCTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR TCA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGGGAAGATGTCCTGGGTaGTTTTGGTCTGCTGAGGAG +
Preference number: 4 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQGRCPG*FWSAEE
Trigger: CTCCTCAGCAGACCAAAATCACCCAGGACATCTTCC...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR TCA 90 bp GTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCTCATGGCGAGATATGGTaGGGATACTGCGCAAGGCAT +
Preference number: 4 (lower is better)
Translates to: VHCLLLSMSSKVTLCQQPHGEIW*GYCARH
Trigger: ATGCCTTGCGCAGTATCCTCACCATATCTCGCCATG...AGGCTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR TCA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCATGGCGAGATATGGTaGGGATACTGCGCAAGGCAT +
Preference number: 4 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQHGEIW*GYCARH
Trigger: ATGCCTTGCGCAGTATCCTCACCATATCTCGCCATG...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR GCA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGTTGCCACTATCCAGCTaGAAGACAGGGACCTTAGGC +
Preference number: 4 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQLPLSS*KTGTLG
Trigger: GCCTAAGGTCCCTGTCTTGCAGCTGGATAGTGGCAA...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR GCA 90 bp GTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCTTTGCCACTATCCAGCTaGAAGACAGGGACCTTAGGC +
Preference number: 4 (lower is better)
Translates to: VHCLLLSMSSKVTLCQQPLPLSS*KTGTLG
Trigger: GCCTAAGGTCCCTGTCTTGCAGCTGGATAGTGGCAA...AGGCTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR GCA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGGCAGACAGAACTGGCTaGAGTTCTGTTGCCTCCCAT +
Preference number: 4 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQADRTG*SSVASH
Trigger: ATGGGAGGCAACAGAACTGCAGCCAGTTCTGTCTGC...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR GCA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGGTCTGGAACCAACTTTaGAGGGCACCCAACTCCTCA +
Preference number: 4 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQVWNQL*RAPNSS
Trigger: TGAGGAGTTGGGTGCCCTGCAAAGTTGGTTCCAGAC...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR GCA 90 bp GTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCTGTCTGGAACCAACTTTaGAGGGCACCCAACTCCTCA +
Preference number: 4 (lower is better)
Translates to: VHCLLLSMSSKVTLCQQPVWNQL*RAPNSS
Trigger: TGAGGAGTTGGGTGCCCTGCAAAGTTGGTTCCAGAC...AGGCTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR GCA 90 bp GTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCTACAGGCAACACTGGATaGTGCTGGAGCTTTAGCGGA +
Preference number: 4 (lower is better)
Translates to: VHCLLLSMSSKVTLCQQPTGNTG*CWSFSG
Trigger: TCCGCTAAAGCTCCAGCAGCATCCAGTGTTGCCTGT...AGGCTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR GCA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGGTGGGCATGTATGGCTaGAGCATGACAGACAGCAAG +
Preference number: 4 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQVGMYG*SMTDSK
Trigger: CTTGCTGTCTGTCATGCTGCAGCCATACATGCCCAC...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS-3UTR GCA 90 bp GTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCTCTTGTCTGCCTTCTGTaGTTTCAGTTCCCGGACGAC +
Preference number: 4 (lower is better)
Translates to: VHCLLLSMSSKVTLCQQPLVCLL*FQFPDD
Trigger: GTCGTCCGGGAACTGAAAGCACAGAAGGCAGACAAG...AGGCTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS-3UTR GCA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCTTGTCTGCCTTCTGTaGTTTCAGTTCCCGGACGAC +
Preference number: 4 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQLVCLL*FQFPDD
Trigger: GTCGTCCGGGAACTGAAAGCACAGAAGGCAGACAAG...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS-3UTR CCA 90 bp GTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCTCGGGTCAGCAACCTCTaGAAGATGTCCTGGGTGATT +
Preference number: 4 (lower is better)
Translates to: VHCLLLSMSSKVTLCQQPRVSNL*KMSWVI
Trigger: AATCACCCAGGACATCTTCCAGAGGTTGCTGACCCG...AGGCTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR CCA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCGGGTCAGCAACCTCTaGAAGATGTCCTGGGTGATT +
Preference number: 4 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQRVSNL*KMSWVI
Trigger: AATCACCCAGGACATCTTCCAGAGGTTGCTGACCCG...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR CCA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGTCTGGTGATGCATCGTaGCTTGAGGCCATCTCGAAG +
Preference number: 4 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQSGDAS*LEAISK
Trigger: CTTCGAGATGGCCTCAAGCCACGATGCATCACCAGA...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR CCA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGACTGTGCCAATTCGGTaGCCTGCTGGCAAGGTACAA +
Preference number: 4 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQTVPIR*PAGKVQ
Trigger: TTGTACCTTGCCAGCAGGCCACCGAATTGGCACAGT...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS-3UTR CCA 90 bp GTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCTACTGTGCCAATTCGGTaGCCTGCTGGCAAGGTACAA +
Preference number: 4 (lower is better)
Translates to: VHCLLLSMSSKVTLCQQPTVPIR*PAGKVQ
Trigger: TTGTACCTTGCCAGCAGGCCACCGAATTGGCACAGT...AGGCTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS-3UTR TCA 90 bp GTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCTCTGGCAAGGTACAAATaGAGCTTGTGGCAAGGATGC +
Preference number: 4 (lower is better)
Translates to: VHCLLLSMSSKVTLCQQPLARYK*SLWQGC
Trigger: GCATCCTTGCCACAAGCTTCATTTGTACCTTGCCAG...AGGCTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS-3UTR TCA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCTGGCAAGGTACAAATaGAGCTTGTGGCAAGGATGC +
Preference number: 4 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQLARYK*SLWQGC
Trigger: GCATCCTTGCCACAAGCTTCATTTGTACCTTGCCAG...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS-3UTR GCA 90 bp GTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCTCCCCCTCCAAAGCGCTaGCTCAAATTTTCAATCTGG +
Preference number: 4 (lower is better)
Translates to: VHCLLLSMSSKVTLCQQPPPPKR*LKFSIW
Trigger: CCAGATTGAAAATTTGAGGCAGCGCTTTGGAGGGGG...AGGCTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS-3UTR GCA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCCCCTCCAAAGCGCTaGCTCAAATTTTCAATCTGG +
Preference number: 4 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQPPPKR*LKFSIW
Trigger: CCAGATTGAAAATTTGAGGCAGCGCTTTGGAGGGGG...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS-3UTR GCA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGAGCGTTTGTATGTGCTaGGAGCCTGCTGCTGTAACT +
Preference number: 4 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQSVCMC*EPAAVT
Trigger: AGTTACAGCAGCAGGCTCGCAGCACATACAAACGCT...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS-3UTR GCA 90 bp GTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCTAGCGTTTGTATGTGCTaGGAGCCTGCTGCTGTAACT +
Preference number: 4 (lower is better)
Translates to: VHCLLLSMSSKVTLCQQPSVCMC*EPAAVT
Trigger: AGTTACAGCAGCAGGCTCGCAGCACATACAAACGCT...AGGCTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS-3UTR GCA 90 bp GTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCTGAGTTTAGCCACCTCTaGAGCAACCTGGTTCTTGTC +
Preference number: 4 (lower is better)
Translates to: VHCLLLSMSSKVTLCQQPEFSHL*SNLVLV
Trigger: GACAAGAACCAGGTTGCTGCAGAGGTGGCTAAACTC...AGGCTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS-3UTR GCA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGGAGTTTAGCCACCTCTaGAGCAACCTGGTTCTTGTC +
Preference number: 4 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQEFSHL*SNLVLV
Trigger: GACAAGAACCAGGTTGCTGCAGAGGTGGCTAAACTC...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS-3UTR CCA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGTGGGTACTCAGTGTCTaGAACCAACTTTGCAGGGCA +
Preference number: 4 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQWVLSV*NQLCRA
Trigger: TGCCCTGCAAAGTTGGTTCCAGACACTGAGTACCCA...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR TCA 90 bp GTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCTCAGGGCTCATTCACTTaGATGTATTGGTTGCCATGG +
Preference number: 4 (lower is better)
Translates to: VHCLLLSMSSKVTLCQQPQGSFT*MYWLPW
Trigger: CCATGGCAACCAATACATTCAAGTGAATGAGCCCTG...AGGCTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR TCA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCAGGGCTCATTCACTTaGATGTATTGGTTGCCATGG +
Preference number: 4 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQQGSFT*MYWLPW
Trigger: CCATGGCAACCAATACATTCAAGTGAATGAGCCCTG...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR GCA 90 bp GTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCTCAGAGAAGAGGTAGTTaGCACTATCCAGCTGCAAGA +
Preference number: 4 (lower is better)
Translates to: VHCLLLSMSSKVTLCQQPQRRGS*HYPAAR
Trigger: TCTTGCAGCTGGATAGTGGCAACTACCTCTTCTCTG...AGGCTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR CCA 90 bp GTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCTTCCCATTCCAGCCACTaGTTGGTGAGATCATCTTGT +
Preference number: 4 (lower is better)
Translates to: VHCLLLSMSSKVTLCQQPSHSSH*LVRSSC
Trigger: ACAAGATGATCTCACCAACCAGTGGCTGGAATGGGA...AGGCTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR CCA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGTCCCATTCCAGCCACTaGTTGGTGAGATCATCTTGT +
Preference number: 4 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQSHSSH*LVRSSC
Trigger: ACAAGATGATCTCACCAACCAGTGGCTGGAATGGGA...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR CCA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGGGATTCCTGTATCCTTaGCCATGTCTCCAAACACTC +
Preference number: 4 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQGFLYP*PCLQTL
Trigger: GAGTGTTTGGAGACATGGCCAAGGATACAGGAATCC...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR CCA 90 bp GTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCTGGATTCCTGTATCCTTaGCCATGTCTCCAAACACTC +
Preference number: 4 (lower is better)
Translates to: VHCLLLSMSSKVTLCQQPGFLYP*PCLQTL
Trigger: GAGTGTTTGGAGACATGGCCAAGGATACAGGAATCC...AGGCTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR TCA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCATTGTCTTTGGCCATaGACTGGTAAAGGTCCACTT +
Preference number: 4 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQHCLWP*TGKGPL
Trigger: AAGTGGACCTTTACCAGTTCATGGCCAAAGACAATG...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR TCA 90 bp GTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCTCATTGTCTTTGGCCATaGACTGGTAAAGGTCCACTT +
Preference number: 4 (lower is better)
Translates to: VHCLLLSMSSKVTLCQQPHCLWP*TGKGPL
Trigger: AAGTGGACCTTTACCAGTTCATGGCCAAAGACAATG...AGGCTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR TCA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGAGTTGCCCAGGTTGTTaGGCAGCTCAGAATTGTTTT +
Preference number: 4 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQSCPGC*AAQNCF
Trigger: AAAACAATTCTGAGCTGCTCAACAACCTGGGCAACT...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR GCA 90 bp GTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCTAAGGCGACAATACCTTaGAAAGACATCAGCACTGAG +
Preference number: 4 (lower is better)
Translates to: VHCLLLSMSSKVTLCQQPKATIP*KDISTE
Trigger: CTCAGTGCTGATGTCTTTGCAAGGTATTGTCGCCTT...AGGCTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR GCA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGAAGGCGACAATACCTTaGAAAGACATCAGCACTGAG +
Preference number: 4 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQKATIP*KDISTE
Trigger: CTCAGTGCTGATGTCTTTGCAAGGTATTGTCGCCTT...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR CCA 90 bp GTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCTTCAGCATGGATGGCATaGTACTTGTCACAGATTTCC +
Preference number: 4 (lower is better)
Translates to: VHCLLLSMSSKVTLCQQPSAWMA*YLSQIS
Trigger: GGAAATCTGTGACAAGTACCATGCCATCCATGCTGA...AGGCTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR CCA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGTCAGCATGGATGGCATaGTACTTGTCACAGATTTCC +
Preference number: 4 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQSAWMA*YLSQIS
Trigger: GGAAATCTGTGACAAGTACCATGCCATCCATGCTGA...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR CCA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGAGATGTCAGCATGGATaGCATGGTACTTGTCACAGA +
Preference number: 4 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQRCQHG*HGTCHR
Trigger: TCTGTGACAAGTACCATGCCATCCATGCTGACATCT...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR CCA 90 bp GTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCTGGAAAGACCAAGCCATaGAAGGGAACATTGTCTTTG +
Preference number: 4 (lower is better)
Translates to: VHCLLLSMSSKVTLCQQPGKTKP*KGTLSL
Trigger: CAAAGACAATGTTCCCTTCCATGGCTTGGTCTTTCC...AGGCTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR GCA 90 bp GTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCTTATCTTCCCCTTTCTTaGCTTGAACCACTAGACAGT +
Preference number: 4 (lower is better)
Translates to: VHCLLLSMSSKVTLCQQPYLPLS*LEPLDS
Trigger: ACTGTCTAGTGGTTCAAGGCAAGAAAGGGGAAGATA...AGGCTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR CCA 90 bp GTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCTATGTATTGGTTGCCATaGCGAGATATGGTGAGGATA +
Preference number: 4 (lower is better)
Translates to: VHCLLLSMSSKVTLCQQPMYWLP*RDMVRI
Trigger: TATCCTCACCATATCTCGCCATGGCAACCAATACAT...AGGCTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR CCA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGATGTATTGGTTGCCATaGCGAGATATGGTGAGGATA +
Preference number: 4 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQMYWLP*RDMVRI
Trigger: TATCCTCACCATATCTCGCCATGGCAACCAATACAT...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR GCA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGAAAATATCGGCAGATTaGACTAGCAGAGAAGAGGTA +
Preference number: 4 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQKISAD*TSREEV
Trigger: TACCTCTTCTCTGCTAGTGCAATCTGCCGATATTTT...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR CCA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGTCATTTTCCAGTTTTTaGAACAAAGGACTGACTGTG +
Preference number: 4 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQSFSSF*NKGLTV
Trigger: CACAGTCAGTCCTTTGTTCCAAAAACTGGAAAATGA...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS-3UTR CCA 90 bp GTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCTTCATTTTCCAGTTTTTaGAACAAAGGACTGACTGTG +
Preference number: 4 (lower is better)
Translates to: VHCLLLSMSSKVTLCQQPSFSSF*NKGLTV
Trigger: CACAGTCAGTCCTTTGTTCCAAAAACTGGAAAATGA...AGGCTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS TCA 90 bp TCCTCCAGCTCGTTGCTGACAGTTCTCCCCTCAGGAGGCGGGGGCTaGGGCTGTGGCTGTTTCTGGAGGTACAGACGAAGTGCCAGGACA +
Preference number: 5 (lower is better)
Translates to: SSSSLLTVLPSGGGG*GCGCFWRYRRSART
Trigger: TGTCCTGGCACTTCGTCTGTACCTCCAGAAACAGCCACAGCCTCAGCCCCCGCCTCCTGAGGGGAGAACTGTCAGCAACGAGCTGGAGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS GCA 90 bp CGTTTGTATGTGCTGCGAGCCTGCTGCTGTAACTGCCTCCACAGCTaGTGGCTTGGGGGAGCCTTTAGCCTGACCCCCTCCAAAGCGCTG +
Preference number: 5 (lower is better)
Translates to: RLYVLRACCCNCLHS*WLGGAFSLTPSKAL
Trigger: CAGCGCTTTGGAGGGGGTCAGGCTAAAGGCTCCCCCAAGCCAGCAGCTGTGGAGGCAGTTACAGCAGCAGGCTCGCAGCACATACAAACG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000037290.12
CDS GCA 90 bp CTCATCCGTCAGCGTTTGTATGTGCTGCGAGCCTGCTGCTGTAACTaGCTCCACAGCTGCTGGCTTGGGGGAGCCTTTAGCCTGACCCCC +
Preference number: 5 (lower is better)
Translates to: LIRQRLYVLRACCCN*LHSCWLGGAFSLTP
Trigger: GGGGGTCAGGCTAAAGGCTCCCCCAAGCCAGCAGCTGTGGAGGCAGTTACAGCAGCAGGCTCGCAGCACATACAAACGCTGACGGATGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037290.12
CDS CCA 90 bp TTGTATGTGCTGCGAGCCTGCTGCTGTAACTGCCTCCACAGCTGCTaGCTTGGGGGAGCCTTTAGCCTGACCCCCTCCAAAGCGCTGCCT +
Preference number: 5 (lower is better)
Translates to: LYVLRACCCNCLHSC*LGGAFSLTPSKALP
Trigger: AGGCAGCGCTTTGGAGGGGGTCAGGCTAAAGGCTCCCCCAAGCCAGCAGCTGTGGAGGCAGTTACAGCAGCAGGCTCGCAGCACATACAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000037290.12
CDS GCA 90 bp ACAAAGCGGTCAGCCAGGAAACGTGCACACCGCTCACACCGAAGCTaGTCCACAGTATCTCGCAGCACAAACCCCCGGGTCAGCAACCTC +
Preference number: 5 (lower is better)
Translates to: TKRSARKRAHRSHRS*STVSRSTNPRVSNL
Trigger: GAGGTTGCTGACCCGGGGGTTTGTGCTGCGAGATACTGTGGAGCAGCTTCGGTGTGAGCGGTGTGCACGTTTCCTGGCTGACCGCTTTGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS GCA 90 bp ACAGAAGGGACACACACCCTCCACAAAGCGGTCAGCCAGGAAACGTaGACACCGCTCACACCGAAGCTGCTCCACAGTATCTCGCAGCAC +
Preference number: 5 (lower is better)
Translates to: TEGTHTLHKAVSQET*TPLTPKLLHSISQH
Trigger: GTGCTGCGAGATACTGTGGAGCAGCTTCGGTGTGAGCGGTGTGCACGTTTCCTGGCTGACCGCTTTGTGGAGGGTGTGTGTCCCTTCTGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS GCA 90 bp CTTGGTCACCTCATCCGTCAGCGTTTGTATGTGCTGCGAGCCTGCTaGTGTAACTGCCTCCACAGCTGCTGGCTTGGGGGAGCCTTTAGC +
Preference number: 5 (lower is better)
Translates to: LGHLIRQRLYVLRAC*CNCLHSCWLGGAFS
Trigger: GCTAAAGGCTCCCCCAAGCCAGCAGCTGTGGAGGCAGTTACAGCAGCAGGCTCGCAGCACATACAAACGCTGACGGATGAGGTGACCAAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS GCA 90 bp CTGCTTGGTCACCTCATCCGTCAGCGTTTGTATGTGCTGCGAGCCTaGTGCTGTAACTGCCTCCACAGCTGCTGGCTTGGGGGAGCCTTT +
Preference number: 5 (lower is better)
Translates to: LLGHLIRQRLYVLRA*CCNCLHSCWLGGAF
Trigger: AAAGGCTCCCCCAAGCCAGCAGCTGTGGAGGCAGTTACAGCAGCAGGCTCGCAGCACATACAAACGCTGACGGATGAGGTGACCAAGCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS GCA 90 bp ACGACGTTGCCCTGCTTGGTCACCTCATCCGTCAGCGTTTGTATGTaGTGCGAGCCTGCTGCTGTAACTGCCTCCACAGCTGCTGGCTTG +
Preference number: 5 (lower is better)
Translates to: TTLPCLVTSSVSVCM*CEPAAVTASTAAGL
Trigger: CAAGCCAGCAGCTGTGGAGGCAGTTACAGCAGCAGGCTCGCAGCACATACAAACGCTGACGGATGAGGTGACCAAGCAGGGCAACGTCGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS GCA 90 bp TGCTGGCAAGGTACAAATGAAGCTTGTGGCAAGGATGCGGCAGGCTaGAGGTGGGAGCTGCAGCTGGGTCTGGATGGTAGAGCTGACTGT +
Preference number: 5 (lower is better)
Translates to: CWQGTNEACGKDAAG*RWELQLGLDGRADC
Trigger: ACAGTCAGCTCTACCATCCAGACCCAGCTGCAGCTCCCACCTGCAGCCTGCCGCATCCTTGCCACAAGCTTCATTTGTACCTTGCCAGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS CCA 90 bp ATGAGAACATTCCTCTCTCCAGGCACAGGCAACACTGGATGCTGCTaGAGCTTTAGCGGAGGCAGGCTTTCCAGACCCTTCTCCCACGCG +
Preference number: 5 (lower is better)
Translates to: MRTFLSPGTGNTGCC*SFSGGRLSRPFSHA
Trigger: CGCGTGGGAGAAGGGTCTGGAAAGCCTGCCTCCGCTAAAGCTCCAGCAGCATCCAGTGTTGCCTGTGCCTGGAGAGAGGAATGTTCTCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS CCA 90 bp TGTCTGCCTTCTGTGCTTTCAGTTCCCGGACGACGTTGCCCTGCTTaGTCACCTCATCCGTCAGCGTTTGTATGTGCTGCGAGCCTGCTG +
Preference number: 5 (lower is better)
Translates to: CLPSVLSVPGRRCPA*SPHPSAFVCAASLL
Trigger: CAGCAGGCTCGCAGCACATACAAACGCTGACGGATGAGGTGACCAAGCAGGGCAACGTCGTCCGGGAACTGAAAGCACAGAAGGCAGACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS TCA 90 bp AGTGCCAGGACACCCTGCTGTTTTAGCACCGTCTCTGCAGCTCGCTaGCACGGTTCCTGGGTACTCAGTGTCTGGAACCAACTTTGCAGG +
Preference number: 5 (lower is better)
Translates to: SARTPCCFSTVSAAR*HGSWVLSVWNQLCR
Trigger: CCTGCAAAGTTGGTTCCAGACACTGAGTACCCAGGAACCGTGTCAGCGAGCTGCAGAGACGGTGCTAAAACAGCAGGGTGTCCTGGCACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS GCA 90 bp GTGATGAGAACATTCCTCTCTCCAGGCACAGGCAACACTGGATGCTaGTGGAGCTTTAGCGGAGGCAGGCTTTCCAGACCCTTCTCCCAC +
Preference number: 5 (lower is better)
Translates to: VMRTFLSPGTGNTGC*WSFSGGRLSRPFSH
Trigger: GTGGGAGAAGGGTCTGGAAAGCCTGCCTCCGCTAAAGCTCCAGCAGCATCCAGTGTTGCCTGTGCCTGGAGAGAGGAATGTTCTCATCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS GCA 90 bp TGCAGCTGGGTCTGGATGGTAGAGCTGACTGTGGGCATGTATGGCTaGAGCATGACAGACAGCAAGGCAGCCATGTTCACTGCCATGCCT +
Preference number: 5 (lower is better)
Translates to: CSWVWMVELTVGMYG*SMTDSKAAMFTAMP
Trigger: AGGCATGGCAGTGAACATGGCTGCCTTGCTGTCTGTCATGCTGCAGCCATACATGCCCACAGTCAGCTCTACCATCCAGACCCAGCTGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS GCA 90 bp CCTGGTTCTTGTCTGCCTTCTGTGCTTTCAGTTCCCGGACGACGTTaGCCTGCTTGGTCACCTCATCCGTCAGCGTTTGTATGTGCTGCG +
Preference number: 5 (lower is better)
Translates to: PGSCLPSVLSVPGRR*PAWSPHPSAFVCAA
Trigger: CGCAGCACATACAAACGCTGACGGATGAGGTGACCAAGCAGGGCAACGTCGTCCGGGAACTGAAAGCACAGAAGGCAGACAAGAACCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS GCA 90 bp TTCTTGTCTGCCTTCTGTGCTTTCAGTTCCCGGACGACGTTGCCCTaGTTGGTCACCTCATCCGTCAGCGTTTGTATGTGCTGCGAGCCT +
Preference number: 5 (lower is better)
Translates to: FLSAFCAFSSRTTLP*LVTSSVSVCMCCEP
Trigger: AGGCTCGCAGCACATACAAACGCTGACGGATGAGGTGACCAAGCAGGGCAACGTCGTCCGGGAACTGAAAGCACAGAAGGCAGACAAGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS GCA 90 bp GAGTTTAGCCACCTCTGCAGCAACCTGGTTCTTGTCTGCCTTCTGTaGTTTCAGTTCCCGGACGACGTTGCCCTGCTTGGTCACCTCATC +
Preference number: 5 (lower is better)
Translates to: EFSHLCSNLVLVCLL*FQFPDDVALLGHLI
Trigger: GATGAGGTGACCAAGCAGGGCAACGTCGTCCGGGAACTGAAAGCACAGAAGGCAGACAAGAACCAGGTTGCTGCAGAGGTGGCTAAACTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS CCA 90 bp CAAGGGCACAGGCGTTCCCCATTTGAGGTCTCTGGTGATGCATCGTaGCTTGAGGCCATCTCGAAGCCAGGAACGTATAATGAACCTGGC +
Preference number: 5 (lower is better)
Translates to: QGHRRSPFEVSGDAS*LEAISKPGTYNEPG
Trigger: GCCAGGTTCATTATACGTTCCTGGCTTCGAGATGGCCTCAAGCCACGATGCATCACCAGAGACCTCAAATGGGGAACGCCTGTGCCCTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS TCA 90 bp CGGGTCAGCAACCTCTGGAAGATGTCCTGGGTGATTTTGGTCTGCTaGGGAGTGGTAGTGCGCCCGAAAGTATCGAACGATATGCCGAAC +
Preference number: 5 (lower is better)
Translates to: RVSNLWKMSWVILVC*GVVVRPKVSNDMPN
Trigger: GTTCGGCATATCGTTCGATACTTTCGGGCGCACTACCACTCCTCAGCAGACCAAAATCACCCAGGACATCTTCCAGAGGTTGCTGACCCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS CCA 90 bp CAGTTTTTGGAACAAAGGACTGACTGTGCCAATTCGGTGGCCTGCTaGCAAGGTACAAATGAAGCTTGTGGCAAGGATGCGGCAGGCTGC +
Preference number: 5 (lower is better)
Translates to: QFLEQRTDCANSVAC*QGTNEACGKDAAGC
Trigger: GCAGCCTGCCGCATCCTTGCCACAAGCTTCATTTGTACCTTGCCAGCAGGCCACCGAATTGGCACAGTCAGTCCTTTGTTCCAAAAACTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS TCA 90 bp AGGACTCTCCGAAGTGGGCCAAGTATATCTTCCCCTTTCTTGCCTTaGACCACTAGACAGTGTAGGGCAGCAGACAGAACTGGCTGCAGT +
Preference number: 5 (lower is better)
Translates to: RTLRSGPSISSPFLP*TTRQCRAADRTGCS
Trigger: ACTGCAGCCAGTTCTGTCTGCTGCCCTACACTGTCTAGTGGTTCAAGGCAAGAAAGGGGAAGATATACTTGGCCCACTTCGGAGAGTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS GCA 90 bp GAGTCAGGACTCTCCGAAGTGGGCCAAGTATATCTTCCCCTTTCTTaGCTTGAACCACTAGACAGTGTAGGGCAGCAGACAGAACTGGCT +
Preference number: 5 (lower is better)
Translates to: ESGLSEVGQVYLPLS*LEPLDSVGQQTELA
Trigger: AGCCAGTTCTGTCTGCTGCCCTACACTGTCTAGTGGTTCAAGGCAAGAAAGGGGAAGATATACTTGGCCCACTTCGGAGAGTCCTGACTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS CCA 90 bp ACTTGTCACAGATTTCCCGTGGGGTTAGGCCCTCCTCCATGGCCTTaGTCTCTGTCGCAGTACCATACTCATCTGTACCACACAGATAGA +
Preference number: 5 (lower is better)
Translates to: TCHRFPVGLGPPPWP*SLSQYHTHLYHTDR
Trigger: TCTATCTGTGTGGTACAGATGAGTATGGTACTGCGACAGAGACCAAGGCCATGGAGGAGGGCCTAACCCCACGGGAAATCTGTGACAAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS CCA 90 bp AAGTATCGAACGATATGCCGAACCAGCGGTAGATGTCAGCATGGATaGCATGGTACTTGTCACAGATTTCCCGTGGGGTTAGGCCCTCCT +
Preference number: 5 (lower is better)
Translates to: KYRTICRTSGRCQHG*HGTCHRFPVGLGPP
Trigger: AGGAGGGCCTAACCCCACGGGAAATCTGTGACAAGTACCATGCCATCCATGCTGACATCTACCGCTGGTTCGGCATATCGTTCGATACTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS TCA 90 bp AGGGCTCATTCACTTGAATGTATTGGTTGCCATGGCGAGATATGGTaGGGATACTGCGCAAGGCATCCCGGATCCGAACCTTTTCCAACA +
Preference number: 5 (lower is better)
Translates to: RAHSLECIGCHGEIW*GYCARHPGSEPFPT
Trigger: TGTTGGAAAAGGTTCGGATCCGGGATGCCTTGCGCAGTATCCTCACCATATCTCGCCATGGCAACCAATACATTCAAGTGAATGAGCCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR CAA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCCTCCTCCATGGCCTaGGTCTCTGTCGCAGTACCA +
Preference number: 5 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQPSSMA*VSVAVP
Trigger: TGGTACTGCGACAGAGACCAAGGCCATGGAGGAGGG...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR CAA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGTCCACAGCTGCTGGCTaGGGGGAGCCTTTAGCCTTT +
Preference number: 5 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQSTAAG*GEPLAF
Trigger: AAAGGCTAAAGGCTCCCCCAAGCCAGCAGCTGTGGA...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS-3UTR CAA 90 bp GTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCTTCCACAGCTGCTGGCTaGGGGGAGCCTTTAGCCTTT +
Preference number: 5 (lower is better)
Translates to: VHCLLLSMSSKVTLCQQPSTAAG*GEPLAF
Trigger: AAAGGCTAAAGGCTCCCCCAAGCCAGCAGCTGTGGA...AGGCTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS-3UTR CAA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGTGTCTGGAACCAACTTaGCAGGGCACCCAACTCCTC +
Preference number: 5 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQCLEPT*QGTQLL
Trigger: GAGGAGTTGGGTGCCCTGCAAAGTTGGTTCCAGACA...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR CAA 90 bp GTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCTTGTCTGGAACCAACTTaGCAGGGCACCCAACTCCTC +
Preference number: 5 (lower is better)
Translates to: VHCLLLSMSSKVTLCQQPCLEPT*QGTQLL
Trigger: GAGGAGTTGGGTGCCCTGCAAAGTTGGTTCCAGACA...AGGCTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR CAA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGTCTTCCTCCAGCTCGTaGCTGACAGTTCTCCCCTCA +
Preference number: 5 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQSSSSS*LTVLPS
Trigger: TGAGGGGAGAACTGTCAGCAACGAGCTGGAGGAAGA...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR CAA 90 bp GTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCTATGGCATTGATGAGCTaGCCACACCTGTCACACTGG +
Preference number: 5 (lower is better)
Translates to: VHCLLLSMSSKVTLCQQPMALMS*PHLSHW
Trigger: CCAGTGTGACAGGTGTGGCAAGCTCATCAATGCCAT...AGGCTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR CAA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGATGGCATTGATGAGCTaGCCACACCTGTCACACTGG +
Preference number: 5 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQMALMS*PHLSHW
Trigger: CCAGTGTGACAGGTGTGGCAAGCTCATCAATGCCAT...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR CAA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGGCAGCAACCTGGTTCTaGTCTGCCTTCTGTGCTTTC +
Preference number: 5 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQAATWF*SAFCAF
Trigger: GAAAGCACAGAAGGCAGACAAGAACCAGGTTGCTGC...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS-3UTR CAA 90 bp GTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCTGCAGCAACCTGGTTCTaGTCTGCCTTCTGTGCTTTC +
Preference number: 5 (lower is better)
Translates to: VHCLLLSMSSKVTLCQQPAATWF*SAFCAF
Trigger: GAAAGCACAGAAGGCAGACAAGAACCAGGTTGCTGC...AGGCTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS-3UTR CAA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCATTCCAGCCACTGGTaGGTGAGATCATCTTGTTCC +
Preference number: 5 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQHSSHW*VRSSCS
Trigger: GGAACAAGATGATCTCACCAACCAGTGGCTGGAATG...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR CAA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGTTGAGCTCAATGGCATaGATGAGCTTGCCACACCTG +
Preference number: 5 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQLSSMA*MSLPHL
Trigger: CAGGTGTGGCAAGCTCATCAATGCCATTGAGCTCAA...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR CAA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGATAATGAACCTGGCATaGGGTGTCCAGTCACTGCCA +
Preference number: 5 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQIMNLA*GVQSLP
Trigger: TGGCAGTGACTGGACACCCAATGCCAGGTTCATTAT...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR CAA 90 bp GTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCTATAATGAACCTGGCATaGGGTGTCCAGTCACTGCCA +
Preference number: 5 (lower is better)
Translates to: VHCLLLSMSSKVTLCQQPIMNLA*GVQSLP
Trigger: TGGCAGTGACTGGACACCCAATGCCAGGTTCATTAT...AGGCTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR CAA 90 bp GTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCTCCACCATTTCTCCCATaGGTCTGTGTAGTTGGCTGT +
Preference number: 5 (lower is better)
Translates to: VHCLLLSMSSKVTLCQQPPPFLP*VCVVGC
Trigger: ACAGCCAACTACACAGACCAATGGGAGAAATGGTGG...AGGCTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR CAA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCACCATTTCTCCCATaGGTCTGTGTAGTTGGCTGT +
Preference number: 5 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQPPFLP*VCVVGC
Trigger: ACAGCCAACTACACAGACCAATGGGAGAAATGGTGG...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR CAA 90 bp GTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCTCTGGTAAAGGTCCACTaGTTCTGGGTTCTTCCACCA +
Preference number: 5 (lower is better)
Translates to: VHCLLLSMSSKVTLCQQPLVKVH*FWVLPP
Trigger: TGGTGGAAGAACCCAGAACAAGTGGACCTTTACCAG...AGGCTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR CAA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCATGGAAGGGAACATaGTCTTTGGCCATGAACTGG +
Preference number: 5 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQPWKGT*SLAMNW
Trigger: CCAGTTCATGGCCAAAGACAATGTTCCCTTCCATGG...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR CAA 90 bp GTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCTGGGATTCCTGTATCCTaGGCCATGTCTCCAAACACT +
Preference number: 5 (lower is better)
Translates to: VHCLLLSMSSKVTLCQQPGIPVS*AMSPNT
Trigger: AGTGTTTGGAGACATGGCCAAGGATACAGGAATCCC...AGGCTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR CAA 90 bp GTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCTAACATGCCAGCTCTGTaGATGAAGTTGCCCAGGTTG +
Preference number: 5 (lower is better)
Translates to: VHCLLLSMSSKVTLCQQPNMPAL*MKLPRL
Trigger: CAACCTGGGCAACTTCATCAACAGAGCTGGCATGTT...AGGCTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR CAA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCAGGAAAGGACAGTTTaGACGACTCAAGCTGTGATC +
Preference number: 5 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQQERTV*TTQAVI
Trigger: GATCACAGCTTGAGTCGTCAAAACTGTCCTTTCCTG...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR CAA 90 bp GTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCTATGAAGTTGCCCAGGTaGTTGAGCAGCTCAGAATTG +
Preference number: 5 (lower is better)
Translates to: VHCLLLSMSSKVTLCQQPMKLPR*LSSSEL
Trigger: CAATTCTGAGCTGCTCAACAACCTGGGCAACTTCAT...AGGCTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR CAA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGATGAAGTTGCCCAGGTaGTTGAGCAGCTCAGAATTG +
Preference number: 5 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQMKLPR*LSSSEL
Trigger: CAATTCTGAGCTGCTCAACAACCTGGGCAACTTCAT...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR CAA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGTTGCACTGTGGTTTCTaGAGCTCAATGGCATTGATG +
Preference number: 5 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQLHCGF*SSMALM
Trigger: CATCAATGCCATTGAGCTCAAGAAACCACAGTGCAA...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR CAA 90 bp GTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCTTTGCACTGTGGTTTCTaGAGCTCAATGGCATTGATG +
Preference number: 5 (lower is better)
Translates to: VHCLLLSMSSKVTLCQQPLHCGF*SSMALM
Trigger: CATCAATGCCATTGAGCTCAAGAAACCACAGTGCAA...AGGCTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR CAA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGAAGTTGCCCAGGTTGTaGAGCAGCTCAGAATTGTTT +
Preference number: 5 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQKLPRL*SSSELF
Trigger: AAACAATTCTGAGCTGCTCAACAACCTGGGCAACTT...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR CAA 90 bp GTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCTAAGTTGCCCAGGTTGTaGAGCAGCTCAGAATTGTTT +
Preference number: 5 (lower is better)
Translates to: VHCLLLSMSSKVTLCQQPKLPRL*SSSELF
Trigger: AAACAATTCTGAGCTGCTCAACAACCTGGGCAACTT...AGGCTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS-3UTR CAA 90 bp GTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGCCTGTCATTTTCCAGTTTTaGGAACAAAGGACTGACTGT +
Preference number: 5 (lower is better)
Translates to: VHCLLLSMSSKVTLCQQPVIFQF*EQRTDC
Trigger: ACAGTCAGTCCTTTGTTCCAAAAACTGGAAAATGAC...AGGCTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS-3UTR CAA 90 bp ACGGTACATTGTTTATTACTGTCCATGTCCAGTAAAGTGACTTTGTGTCAACAGGTCATTTTCCAGTTTTaGGAACAAAGGACTGACTGT +
Preference number: 5 (lower is better)
Translates to: TVHCLLLSMSSKVTLCQQVIFQF*EQRTDC
Trigger: ACAGTCAGTCCTTTGTTCCAAAAACTGGAAAATGAC...CTGTTGACACAAAGTCACTTTACTGGACATGGACAGTAATAAACAATGTACCGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS GCA 72 bp GTGCTGCGAGCCTGCTGCTGTAACTGCCTCCACAGCTaGTGGCTTGGGGGAGCCTTTAGCCTGACCCCCTCC +
Preference number: 6 (lower is better)
Translates to: VLRACCCNCLHS*WLGGAFSLTPS
Trigger: GGAGGGGGTCAGGCTAAAGGCTCCCCCAAGCCAGCAGCTGTGGAGGCAGTTACAGCAGCAGGCTCGCAGCAC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000037290.12
CDS GCA 72 bp TCAGCCAGGAAACGTGCACACCGCTCACACCGAAGCTaGTCCACAGTATCTCGCAGCACAAACCCCCGGGTC +
Preference number: 6 (lower is better)
Translates to: SARKRAHRSHRS*STVSRSTNPRV
Trigger: GACCCGGGGGTTTGTGCTGCGAGATACTGTGGAGCAGCTTCGGTGTGAGCGGTGTGCACGTTTCCTGGCTGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS TCA 72 bp TCGTTGCTGACAGTTCTCCCCTCAGGAGGCGGGGGCTaGGGCTGTGGCTGTTTCTGGAGGTACAGACGAAGT +
Preference number: 6 (lower is better)
Translates to: SLLTVLPSGGGG*GCGCFWRYRRS
Trigger: ACTTCGTCTGTACCTCCAGAAACAGCCACAGCCTCAGCCCCCGCCTCCTGAGGGGAGAACTGTCAGCAACGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS GCA 72 bp GGCAGCCATGTTCACTGCCATGCCTGTCACTGTGCCTaGCCGCTGCCTGTCCATCTCACCACCTTTAATCCG +
Preference number: 6 (lower is better)
Translates to: GSHVHCHACHCA*PLPVHLTTFNP
Trigger: CGGATTAAAGGTGGTGAGATGGACAGGCAGCGGGCAGGCACAGTGACAGGCATGGCAGTGAACATGGCTGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS GCA 72 bp CAGCGTTTGTATGTGCTGCGAGCCTGCTGCTGTAACTaGCTCCACAGCTGCTGGCTTGGGGGAGCCTTTAGC +
Preference number: 6 (lower is better)
Translates to: QRLYVLRACCCN*LHSCWLGGAFS
Trigger: GCTAAAGGCTCCCCCAAGCCAGCAGCTGTGGAGGCAGTTACAGCAGCAGGCTCGCAGCACATACAAACGCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS GCA 72 bp CTCATCCGTCAGCGTTTGTATGTGCTGCGAGCCTGCTaGTGTAACTGCCTCCACAGCTGCTGGCTTGGGGGA +
Preference number: 6 (lower is better)
Translates to: LIRQRLYVLRAC*CNCLHSCWLGG
Trigger: TCCCCCAAGCCAGCAGCTGTGGAGGCAGTTACAGCAGCAGGCTCGCAGCACATACAAACGCTGACGGATGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS GCA 72 bp CACCTCATCCGTCAGCGTTTGTATGTGCTGCGAGCCTaGTGCTGTAACTGCCTCCACAGCTGCTGGCTTGGG +
Preference number: 6 (lower is better)
Translates to: HLIRQRLYVLRA*CCNCLHSCWLG
Trigger: CCCAAGCCAGCAGCTGTGGAGGCAGTTACAGCAGCAGGCTCGCAGCACATACAAACGCTGACGGATGAGGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS CAA 90 bp AGCTCGCTGACACGGTTCCTGGGTACTCAGTGTCTGGAACCAACTTaGCAGGGCACCCAACTCCTCAGGGAGGTAAGCTGGGTCTTGCAG +
Preference number: 6 (lower is better)
Translates to: SSLTRFLGTQCLEPT*QGTQLLREVSWVLQ
Trigger: CTGCAAGACCCAGCTTACCTCCCTGAGGAGTTGGGTGCCCTGCAAAGTTGGTTCCAGACACTGAGTACCCAGGAACCGTGTCAGCGAGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS TCA 72 bp CTGTGCCAATTCGGTGGCCTGCTGGCAAGGTACAAATaGAGCTTGTGGCAAGGATGCGGCAGGCTGCAGGTG +
Preference number: 6 (lower is better)
Translates to: LCQFGGLLARYK*SLWQGCGRLQV
Trigger: CACCTGCAGCCTGCCGCATCCTTGCCACAAGCTTCATTTGTACCTTGCCAGCAGGCCACCGAATTGGCACAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS GCA 72 bp ACATTCCTCTCTCCAGGCACAGGCAACACTGGATGCTaGTGGAGCTTTAGCGGAGGCAGGCTTTCCAGACCC +
Preference number: 6 (lower is better)
Translates to: TFLSPGTGNTGC*WSFSGGRLSRP
Trigger: GGGTCTGGAAAGCCTGCCTCCGCTAAAGCTCCAGCAGCATCCAGTGTTGCCTGTGCCTGGAGAGAGGAATGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS GCA 72 bp ACACACACCCTCCACAAAGCGGTCAGCCAGGAAACGTaGACACCGCTCACACCGAAGCTGCTCCACAGTATC +
Preference number: 6 (lower is better)
Translates to: THTLHKAVSQET*TPLTPKLLHSI
Trigger: GATACTGTGGAGCAGCTTCGGTGTGAGCGGTGTGCACGTTTCCTGGCTGACCGCTTTGTGGAGGGTGTGTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS GCA 72 bp CCCTGCTTGGTCACCTCATCCGTCAGCGTTTGTATGTaGTGCGAGCCTGCTGCTGTAACTGCCTCCACAGCT +
Preference number: 6 (lower is better)
Translates to: PCLVTSSVSVCM*CEPAAVTASTA
Trigger: AGCTGTGGAGGCAGTTACAGCAGCAGGCTCGCAGCACATACAAACGCTGACGGATGAGGTGACCAAGCAGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS CCA 72 bp CAGCTGCAAGACAGGGACCTTAGGCCGGGTAAGGAATaGTACCACACACTCTTCGGGGCCTACGGTGCTGAT +
Preference number: 6 (lower is better)
Translates to: QLQDRDLRPGKE*YHTLFGAYGAD
Trigger: ATCAGCACCGTAGGCCCCGAAGAGTGTGTGGTACCATTCCTTACCCGGCCTAAGGTCCCTGTCTTGCAGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS CCA 72 bp TTCCTCTCTCCAGGCACAGGCAACACTGGATGCTGCTaGAGCTTTAGCGGAGGCAGGCTTTCCAGACCCTTC +
Preference number: 6 (lower is better)
Translates to: FLSPGTGNTGCC*SFSGGRLSRPF
Trigger: GAAGGGTCTGGAAAGCCTGCCTCCGCTAAAGCTCCAGCAGCATCCAGTGTTGCCTGTGCCTGGAGAGAGGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS CAA 90 bp TTGTCTGCCTTCTGTGCTTTCAGTTCCCGGACGACGTTGCCCTGCTaGGTCACCTCATCCGTCAGCGTTTGTATGTGCTGCGAGCCTGCT +
Preference number: 6 (lower is better)
Translates to: LSAFCAFSSRTTLPC*VTSSVSVCMCCEPA
Trigger: AGCAGGCTCGCAGCACATACAAACGCTGACGGATGAGGTGACCAAGCAGGGCAACGTCGTCCGGGAACTGAAAGCACAGAAGGCAGACAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS GCA 72 bp GCCTTCTGTGCTTTCAGTTCCCGGACGACGTTGCCCTaGTTGGTCACCTCATCCGTCAGCGTTTGTATGTGC +
Preference number: 6 (lower is better)
Translates to: AFCAFSSRTTLP*LVTSSVSVCMC
Trigger: GCACATACAAACGCTGACGGATGAGGTGACCAAGCAGGGCAACGTCGTCCGGGAACTGAAAGCACAGAAGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS GCA 72 bp CACCTCTGCAGCAACCTGGTTCTTGTCTGCCTTCTGTaGTTTCAGTTCCCGGACGACGTTGCCCTGCTTGGT +
Preference number: 6 (lower is better)
Translates to: HLCSNLVLVCLL*FQFPDDVALLG
Trigger: ACCAAGCAGGGCAACGTCGTCCGGGAACTGAAAGCACAGAAGGCAGACAAGAACCAGGTTGCTGCAGAGGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS CCA 72 bp TCTGTGCTTTCAGTTCCCGGACGACGTTGCCCTGCTTaGTCACCTCATCCGTCAGCGTTTGTATGTGCTGCG +
Preference number: 6 (lower is better)
Translates to: SVLSVPGRRCPA*SPHPSAFVCAA
Trigger: CGCAGCACATACAAACGCTGACGGATGAGGTGACCAAGCAGGGCAACGTCGTCCGGGAACTGAAAGCACAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS CAA 90 bp ACCTGGTTCTTGTCTGCCTTCTGTGCTTTCAGTTCCCGGACGACGTaGCCCTGCTTGGTCACCTCATCCGTCAGCGTTTGTATGTGCTGC +
Preference number: 6 (lower is better)
Translates to: TWFLSAFCAFSSRTT*PCLVTSSVSVCMCC
Trigger: GCAGCACATACAAACGCTGACGGATGAGGTGACCAAGCAGGGCAACGTCGTCCGGGAACTGAAAGCACAGAAGGCAGACAAGAACCAGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS TCA 72 bp ACACCCTGCTGTTTTAGCACCGTCTCTGCAGCTCGCTaGCACGGTTCCTGGGTACTCAGTGTCTGGAACCAA +
Preference number: 6 (lower is better)
Translates to: TPCCFSTVSAAR*HGSWVLSVWNQ
Trigger: TTGGTTCCAGACACTGAGTACCCAGGAACCGTGTCAGCGAGCTGCAGAGACGGTGCTAAAACAGCAGGGTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS GCA 72 bp AGAACATTCCTCTCTCCAGGCACAGGCAACACTGGATaGTGCTGGAGCTTTAGCGGAGGCAGGCTTTCCAGA +
Preference number: 6 (lower is better)
Translates to: RTFLSPGTGNTG*CWSFSGGRLSR
Trigger: TCTGGAAAGCCTGCCTCCGCTAAAGCTCCAGCAGCATCCAGTGTTGCCTGTGCCTGGAGAGAGGAATGTTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS GCA 72 bp ATGTTCACTGCCATGCCTGTCACTGTGCCTGCCCGCTaGCTGTCCATCTCACCACCTTTAATCCGTTTCCAG +
Preference number: 6 (lower is better)
Translates to: MFTAMPVTVPAR*LSISPPLIRFQ
Trigger: CTGGAAACGGATTAAAGGTGGTGAGATGGACAGGCAGCGGGCAGGCACAGTGACAGGCATGGCAGTGAACAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS GCA 72 bp TGTCTGCCTTCTGTGCTTTCAGTTCCCGGACGACGTTaGCCTGCTTGGTCACCTCATCCGTCAGCGTTTGTA +
Preference number: 6 (lower is better)
Translates to: CLPSVLSVPGRR*PAWSPHPSAFV
Trigger: TACAAACGCTGACGGATGAGGTGACCAAGCAGGGCAACGTCGTCCGGGAACTGAAAGCACAGAAGGCAGACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS CCA 72 bp AGATTTCCCGTGGGGTTAGGCCCTCCTCCATGGCCTTaGTCTCTGTCGCAGTACCATACTCATCTGTACCAC +
Preference number: 6 (lower is better)
Translates to: RFPVGLGPPPWP*SLSQYHTHLYH
Trigger: GTGGTACAGATGAGTATGGTACTGCGACAGAGACCAAGGCCATGGAGGAGGGCCTAACCCCACGGGAAATCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS CAA 72 bp TCCTCAAAACCTTCCAAGGGCACAGGCGTTCCCCATTaGAGGTCTCTGGTGATGCATCGTGGCTTGAGGCCA +
Preference number: 6 (lower is better)
Translates to: SSKPSKGTGVPH*RSLVMHRGLRP
Trigger: TGGCCTCAAGCCACGATGCATCACCAGAGACCTCAAATGGGGAACGCCTGTGCCCTTGGAAGGTTTTGAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS CAA 72 bp TTCTGTGCTTTCAGTTCCCGGACGACGTTGCCCTGCTaGGTCACCTCATCCGTCAGCGTTTGTATGTGCTGC +
Preference number: 6 (lower is better)
Translates to: FCAFSSRTTLPC*VTSSVSVCMCC
Trigger: GCAGCACATACAAACGCTGACGGATGAGGTGACCAAGCAGGGCAACGTCGTCCGGGAACTGAAAGCACAGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS CAA 72 bp TTGTCTGCCTTCTGTGCTTTCAGTTCCCGGACGACGTaGCCCTGCTTGGTCACCTCATCCGTCAGCGTTTGT +
Preference number: 6 (lower is better)
Translates to: LSAFCAFSSRTT*PCLVTSSVSVC
Trigger: ACAAACGCTGACGGATGAGGTGACCAAGCAGGGCAACGTCGTCCGGGAACTGAAAGCACAGAAGGCAGACAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS CAA 90 bp CAGGAGCGGCAGATTTTGCACTGTGGTTTCTTGAGCTCAATGGCATaGATGAGCTTGCCACACCTGTCACACTGGTCACCTCGGGCCTCT +
Preference number: 6 (lower is better)
Translates to: QERQILHCGFLSSMA*MSLPHLSHWSPRAS
Trigger: AGAGGCCCGAGGTGACCAGTGTGACAGGTGTGGCAAGCTCATCAATGCCATTGAGCTCAAGAAACCACAGTGCAAAATCTGCCGCTCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS CAA 90 bp GGCACAGGCGTTCCCCATTTGAGGTCTCTGGTGATGCATCGTGGCTaGAGGCCATCTCGAAGCCAGGAACGTATAATGAACCTGGCATTG +
Preference number: 6 (lower is better)
Translates to: GTGVPHLRSLVMHRG*RPSRSQERIMNLAL
Trigger: CAATGCCAGGTTCATTATACGTTCCTGGCTTCGAGATGGCCTCAAGCCACGATGCATCACCAGAGACCTCAAATGGGGAACGCCTGTGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS CAA 72 bp CACTGTGGTTTCTTGAGCTCAATGGCATTGATGAGCTaGCCACACCTGTCACACTGGTCACCTCGGGCCTCT +
Preference number: 6 (lower is better)
Translates to: HCGFLSSMALMS*PHLSHWSPRAS
Trigger: AGAGGCCCGAGGTGACCAGTGTGACAGGTGTGGCAAGCTCATCAATGCCATTGAGCTCAAGAAACCACAGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS CAA 90 bp AATACCTTGTCCTCAAAACCTTCCAAGGGCACAGGCGTTCCCCATTaGAGGTCTCTGGTGATGCATCGTGGCTTGAGGCCATCTCGAAGC +
Preference number: 6 (lower is better)
Translates to: NTLSSKPSKGTGVPH*RSLVMHRGLRPSRS
Trigger: GCTTCGAGATGGCCTCAAGCCACGATGCATCACCAGAGACCTCAAATGGGGAACGCCTGTGCCCTTGGAAGGTTTTGAGGACAAGGTATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS CCA 72 bp AGGCGTTCCCCATTTGAGGTCTCTGGTGATGCATCGTaGCTTGAGGCCATCTCGAAGCCAGGAACGTATAAT +
Preference number: 6 (lower is better)
Translates to: RRSPFEVSGDAS*LEAISKPGTYN
Trigger: ATTATACGTTCCTGGCTTCGAGATGGCCTCAAGCCACGATGCATCACCAGAGACCTCAAATGGGGAACGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS CCA 72 bp GAACAAAGGACTGACTGTGCCAATTCGGTGGCCTGCTaGCAAGGTACAAATGAAGCTTGTGGCAAGGATGCG +
Preference number: 6 (lower is better)
Translates to: EQRTDCANSVAC*QGTNEACGKDA
Trigger: CGCATCCTTGCCACAAGCTTCATTTGTACCTTGCCAGCAGGCCACCGAATTGGCACAGTCAGTCCTTTGTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS CAA 72 bp GGCTGCAGTTCTGTTGCCTCCCATTCCAGCCACTGGTaGGTGAGATCATCTTGTTCCCAGCCACATAACAGA +
Preference number: 6 (lower is better)
Translates to: GCSSVASHSSHW*VRSSCSQPHNR
Trigger: TCTGTTATGTGGCTGGGAACAAGATGATCTCACCAACCAGTGGCTGGAATGGGAGGCAACAGAACTGCAGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS CAA 72 bp ACAGGGCAGGAGCGGCAGATTTTGCACTGTGGTTTCTaGAGCTCAATGGCATTGATGAGCTTGCCACACCTG +
Preference number: 6 (lower is better)
Translates to: TGQERQILHCGF*SSMALMSLPHL
Trigger: CAGGTGTGGCAAGCTCATCAATGCCATTGAGCTCAAGAAACCACAGTGCAAAATCTGCCGCTCCTGCCCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS TCA 72 bp AACCTCTGGAAGATGTCCTGGGTGATTTTGGTCTGCTaGGGAGTGGTAGTGCGCCCGAAAGTATCGAACGAT +
Preference number: 6 (lower is better)
Translates to: NLWKMSWVILVC*GVVVRPKVSND
Trigger: ATCGTTCGATACTTTCGGGCGCACTACCACTCCTCAGCAGACCAAAATCACCCAGGACATCTTCCAGAGGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS TCA 72 bp TCACTTGAATGTATTGGTTGCCATGGCGAGATATGGTaGGGATACTGCGCAAGGCATCCCGGATCCGAACCT +
Preference number: 6 (lower is better)
Translates to: SLECIGCHGEIW*GYCARHPGSEP
Trigger: AGGTTCGGATCCGGGATGCCTTGCGCAGTATCCTCACCATATCTCGCCATGGCAACCAATACATTCAAGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS GCA 72 bp CTCTCCGAAGTGGGCCAAGTATATCTTCCCCTTTCTTaGCTTGAACCACTAGACAGTGTAGGGCAGCAGACA +
Preference number: 6 (lower is better)
Translates to: LSEVGQVYLPLS*LEPLDSVGQQT
Trigger: TGTCTGCTGCCCTACACTGTCTAGTGGTTCAAGGCAAGAAAGGGGAAGATATACTTGGCCCACTTCGGAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS CCA 72 bp ACGATATGCCGAACCAGCGGTAGATGTCAGCATGGATaGCATGGTACTTGTCACAGATTTCCCGTGGGGTTA +
Preference number: 6 (lower is better)
Translates to: TICRTSGRCQHG*HGTCHRFPVGL
Trigger: TAACCCCACGGGAAATCTGTGACAAGTACCATGCCATCCATGCTGACATCTACCGCTGGTTCGGCATATCGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS CAA 72 bp GTTCCCCATTTGAGGTCTCTGGTGATGCATCGTGGCTaGAGGCCATCTCGAAGCCAGGAACGTATAATGAAC +
Preference number: 6 (lower is better)
Translates to: VPHLRSLVMHRG*RPSRSQERIMN
Trigger: GTTCATTATACGTTCCTGGCTTCGAGATGGCCTCAAGCCACGATGCATCACCAGAGACCTCAAATGGGGAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS TCA 72 bp CGAAGTGGGCCAAGTATATCTTCCCCTTTCTTGCCTTaGACCACTAGACAGTGTAGGGCAGCAGACAGAACT +
Preference number: 6 (lower is better)
Translates to: RSGPSISSPFLP*TTRQCRAADRT
Trigger: AGTTCTGTCTGCTGCCCTACACTGTCTAGTGGTTCAAGGCAAGAAAGGGGAAGATATACTTGGCCCACTTCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS GCA 72 bp TTGGAACAAAGGACTGACTGTGCCAATTCGGTGGCCTaGTGGCAAGGTACAAATGAAGCTTGTGGCAAGGAT +
Preference number: 6 (lower is better)
Translates to: LEQRTDCANSVA*WQGTNEACGKD
Trigger: ATCCTTGCCACAAGCTTCATTTGTACCTTGCCAGCAGGCCACCGAATTGGCACAGTCAGTCCTTTGTTCCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS CCA 72 bp TTTAGATCCAAGAGTTTAGCCACCTCTGCAGCAACCTaGTTCTTGTCTGCCTTCTGTGCTTTCAGTTCCCGG +
Preference number: 6 (lower is better)
Translates to: FRSKSLATSAAT*FLSAFCAFSSR
Trigger: CCGGGAACTGAAAGCACAGAAGGCAGACAAGAACCAGGTTGCTGCAGAGGTGGCTAAACTCTTGGATCTAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS CAA 90 bp CTGGTAAAGGTCCACTTGTTCTGGGTTCTTCCACCATTTCTCCCATaGGTCTGTGTAGTTGGCTGTGATGGACACGTAGCCAATAGTAGC +
Preference number: 6 (lower is better)
Translates to: LVKVHLFWVLPPFLP*VCVVGCDGHVANSS
Trigger: GCTACTATTGGCTACGTGTCCATCACAGCCAACTACACAGACCAATGGGAGAAATGGTGGAAGAACCCAGAACAAGTGGACCTTTACCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS TCA 72 bp GCAGTTCTGTTGCCTCCCATTCCAGCCACTGGTTGGTaGGATCATCTTGTTCCCAGCCACATAACAGAAAAA +
Preference number: 6 (lower is better)
Translates to: AVLLPPIPATGW*DHLVPSHITEK
Trigger: TTTTTCTGTTATGTGGCTGGGAACAAGATGATCTCACCAACCAGTGGCTGGAATGGGAGGCAACAGAACTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS TCA 72 bp AGACCAAGCCATGGAAGGGAACATTGTCTTTGGCCATaGACTGGTAAAGGTCCACTTGTTCTGGGTTCTTCC +
Preference number: 6 (lower is better)
Translates to: RPSHGREHCLWP*TGKGPLVLGSS
Trigger: GGAAGAACCCAGAACAAGTGGACCTTTACCAGTTCATGGCCAAAGACAATGTTCCCTTCCATGGCTTGGTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS TCA 72 bp CAATCTGGTCATTTTCCAGTTTTTGGAACAAAGGACTaGCTGTGCCAATTCGGTGGCCTGCTGGCAAGGTAC +
Preference number: 6 (lower is better)
Translates to: QSGHFPVFGTKD*LCQFGGLLARY
Trigger: GTACCTTGCCAGCAGGCCACCGAATTGGCACAGTCAGTCCTTTGTTCCAAAAACTGGAAAATGACCAGATTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS TCA 72 bp GAGCCTTTAGCCTTTAACTCCAAGGACTCTTCTAGCTaGCCCCCTCCAAAGCGCTGCCTCAAATTTTCAATC +
Preference number: 6 (lower is better)
Translates to: EPLAFNSKDSSS*PPPKRCLKFSI
Trigger: GATTGAAAATTTGAGGCAGCGCTTTGGAGGGGGTCAGCTAGAAGAGTCCTTGGAGTTAAAGGCTAAAGGCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS CCA 72 bp CAAGCTGTGATCAATGTGAGTCAGGACTCTCCGAAGTaGGCCAAGTATATCTTCCCCTTTCTTGCCTTGAAC +
Preference number: 6 (lower is better)
Translates to: QAVINVSQDSPK*AKYIFPFLALN
Trigger: GTTCAAGGCAAGAAAGGGGAAGATATACTTGGCCCACTTCGGAGAGTCCTGACTCACATTGATCACAGCTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS CCA 72 bp AGTTTTTGGAACAAAGGACTGACTGTGCCAATTCGGTaGCCTGCTGGCAAGGTACAAATGAAGCTTGTGGCA +
Preference number: 6 (lower is better)
Translates to: SFWNKGLTVPIR*PAGKVQMKLVA
Trigger: TGCCACAAGCTTCATTTGTACCTTGCCAGCAGGCCACCGAATTGGCACAGTCAGTCCTTTGTTCCAAAAACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000037290.12
ENSMUST00000134778.3
ENSMUST00000171564.8
CDS CAA 72 bp CAGATTTTGCACTGTGGTTTCTTGAGCTCAATGGCATaGATGAGCTTGCCACACCTGTCACACTGGTCACCT +
Preference number: 6 (lower is better)
Translates to: QILHCGFLSSMA*MSLPHLSHWSP
Trigger: AGGTGACCAGTGTGACAGGTGTGGCAAGCTCATCAATGCCATTGAGCTCAAGAAACCACAGTGCAAAATCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8
CDS CAA 90 bp TTAGAAACAAACATGCCAGCTCTGTTGATGAAGTTGCCCAGGTTGTaGAGCAGCTCAGAATTGTTTTTAATCAACAAGTCTGTCCAGGAG +
Preference number: 6 (lower is better)
Translates to: LETNMPALLMKLPRL*SSSELFLINKSVQE
Trigger: CTCCTGGACAGACTTGTTGATTAAAAACAATTCTGAGCTGCTCAACAACCTGGGCAACTTCATCAACAGAGCTGGCATGTTTGTTTCTAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037290.12
ENSMUST00000171564.8