Pregenerated sensors for MARCKSL1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000047945

Ensembl transcript IDs: ENSMUST00000062356.7

Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR CCA 90 bp	CAGCAATTGCCTTCTGCAGGGATGGGGCTCGGGAAAGAGGTAGGGACAGGGCATAAAAGGGAGCGTGGCTaGGAGGGGGCAACAAGCCCC	+
Preference number: 2 (lower is better) Translates to: QQLPSAGMGLGKEVGTGHKRERG*EGATSP Trigger: GGGGCTTGTTGCCCCCTCCCAGCCACGCTCCCTTTT...ATGCCCTGTCCCTACCTCTTTCCCGAGCCCCATCCCTGCAGAAGGCAATTGCTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000062356.7
3UTR-3UTR CCA 90 bp	CAGCAATTGCCTTCTGCAGGGATGGGGCTCGGGAAAGAGGTAGGGACAGGGCATATCACTAACCTAACTTaGGAAACCGTAAGGGACCAT	+
Preference number: 2 (lower is better) Translates to: QQLPSAGMGLGKEVGTGHITNLT*ETVRDH Trigger: ATGGTCCCTTACGGTTTCCCAAGTTAGGTTAGTGAT...ATGCCCTGTCCCTACCTCTTTCCCGAGCCCCATCCCTGCAGAAGGCAATTGCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062356.7
CDS-3UTR GCA 90 bp	ATTGGAAACCCAGCAATTGCCTTCTGCAGGGATGGGGCTCGGGAAAGAGGTAGGGGGGGAAGCGCCCGCTaGCTCCTCGGCGGTCACGTC	+
Preference number: 4 (lower is better) Translates to: IGNPAIAFCRDGARERGRGGSAR*LLGGHV Trigger: GACGTGACCGCCGAGGAGGCAGCGGGCGCTTCCCCC...CCTACCTCTTTCCCGAGCCCCATCCCTGCAGAAGGCAATTGCTGGGTTTCCAAT 63% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt. Matches the following 1 transcripts: ENSMUST00000062356.7
CDS-3UTR GCA 90 bp	CAGCAATTGCCTTCTGCAGGGATGGGGCTCGGGAAAGAGGTAGGGACAGGGCATCAGTGCCCTCGTCGCTaGAGGCGCTCATCTCGCCCT	+
Preference number: 4 (lower is better) Translates to: QQLPSAGMGLGKEVGTGHQCPRR*RRSSRP Trigger: AGGGCGAGATGAGCGCCTGCAGCGACGAGGGCACTG...ATGCCCTGTCCCTACCTCTTTCCCGAGCCCCATCCCTGCAGAAGGCAATTGCTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062356.7
CDS-3UTR CCA 90 bp	ATTGGAAACCCAGCAATTGCCTTCTGCAGGGATGGGGCTCGGGAAAGAGGTAGGCTGGGCCCGAGGGAGTaGATGGCTCTGCAGCCTGGG	+
Preference number: 4 (lower is better) Translates to: IGNPAIAFCRDGARERGRLGPRE*MALQPG Trigger: CCCAGGCTGCAGAGCCATCCACTCCCTCGGGCCCAG...CCTACCTCTTTCCCGAGCCCCATCCCTGCAGAAGGCAATTGCTGGGTTTCCAAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062356.7
CDS-3UTR TCA 90 bp	ATTGGAAACCCAGCAATTGCCTTCTGCAGGGATGGGGCTCGGGAAAGAGGTAGGTCCGTTCACGGGTGGTaGCTCCCCTTCACCCTTGGG	+
Preference number: 4 (lower is better) Translates to: IGNPAIAFCRDGARERGRSVHGW*LPFTLG Trigger: CCCAAGGGTGAAGGGGAGTCACCACCCGTGAACGGA...CCTACCTCTTTCCCGAGCCCCATCCCTGCAGAAGGCAATTGCTGGGTTTCCAAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062356.7
CDS-3UTR TCA 90 bp	ATTGGAAACCCAGCAATTGCCTTCTGCAGGGATGGGGCTCGGGAAAGAGGTAGGTGTTGGCGAGGAGGCTaGGGAATCACCCCCACCCTC	+
Preference number: 4 (lower is better) Translates to: IGNPAIAFCRDGARERGRCWRGG*GITPTL Trigger: GAGGGTGGGGGTGATTCCTCAGCCTCCTCGCCAACA...CCTACCTCTTTCCCGAGCCCCATCCCTGCAGAAGGCAATTGCTGGGTTTCCAAT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062356.7
CDS-3UTR GCA 90 bp	ATTGGAAACCCAGCAATTGCCTTCTGCAGGGATGGGGCTCGGGAAAGAGGTAGGATCTCGCCCTGCTCCTaGTCTTCCTCTGTTGGCGAG	+
Preference number: 4 (lower is better) Translates to: IGNPAIAFCRDGARERGRISPCS*SSSVGE Trigger: CTCGCCAACAGAGGAAGAGCAGGAGCAGGGCGAGAT...CCTACCTCTTTCCCGAGCCCCATCCCTGCAGAAGGCAATTGCTGGGTTTCCAAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062356.7
CDS-3UTR GCA 90 bp	ATTGGAAACCCAGCAATTGCCTTCTGCAGGGATGGGGCTCGGGAAAGAGGTAGGACCAGTAGCCCCAGCTaGCTCATCTGTTCCGTTCAC	+
Preference number: 4 (lower is better) Translates to: IGNPAIAFCRDGARERGRTSSPS*LICSVH Trigger: GTGAACGGAACAGATGAGGCAGCTGGGGCTACTGGT...CCTACCTCTTTCCCGAGCCCCATCCCTGCAGAAGGCAATTGCTGGGTTTCCAAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062356.7
CDS-3UTR CCA 90 bp	ATTGGAAACCCAGCAATTGCCTTCTGCAGGGATGGGGCTCGGGAAAGAGGTAGGATTTCTTCTTCTTCTTaGGGGTCTCCTTGGGGGCGA	+
Preference number: 4 (lower is better) Translates to: IGNPAIAFCRDGARERGRISSSS*GSPWGR Trigger: TCGCCCCCAAGGAGACCCCCAAGAAGAAGAAGAAAT...CCTACCTCTTTCCCGAGCCCCATCCCTGCAGAAGGCAATTGCTGGGTTTCCAAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000062356.7
CDS-3UTR TCA 90 bp	ATTGGAAACCCAGCAATTGCCTTCTGCAGGGATGGGGCTCGGGAAAGAGGTAGGCCTTCCGATTTCTCTTaGAGGACAGGCCACTCAATT	+
Preference number: 4 (lower is better) Translates to: IGNPAIAFCRDGARERGRPSDFS*RTGHSI Trigger: AATTGAGTGGCCTGTCCTTCAAGAGAAATCGGAAGG...CCTACCTCTTTCCCGAGCCCCATCCCTGCAGAAGGCAATTGCTGGGTTTCCAAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062356.7
CDS-3UTR CAA 90 bp	CAGCAATTGCCTTCTGCAGGGATGGGGCTCGGGAAAGAGGTAGGGACAGGGCATCCTGCTCTTCCTCTGTaGGCGAGGAGGCTGAGGAAT	+
Preference number: 5 (lower is better) Translates to: QQLPSAGMGLGKEVGTGHPALPL*ARRLRN Trigger: ATTCCTCAGCCTCCTCGCCAACAGAGGAAGAGCAGG...ATGCCCTGTCCCTACCTCTTTCCCGAGCCCCATCCCTGCAGAAGGCAATTGCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062356.7
CDS-3UTR CAA 90 bp	ATTGGAAACCCAGCAATTGCCTTCTGCAGGGATGGGGCTCGGGAAAGAGGTAGGTCTGTGTCTCCTTCCTaGGAGGCAGCACTAGCCTCT	+
Preference number: 5 (lower is better) Translates to: IGNPAIAFCRDGARERGRSVSPS*EAALAS Trigger: AGAGGCTAGTGCTGCCTCCAAGGAAGGAGACACAGA...CCTACCTCTTTCCCGAGCCCCATCCCTGCAGAAGGCAATTGCTGGGTTTCCAAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062356.7
CDS-3UTR CAA 90 bp	ATTGGAAACCCAGCAATTGCCTTCTGCAGGGATGGGGCTCGGGAAAGAGGTAGGTCCTTCCGATTTCTCTaGAAGGACAGGCCACTCAAT	+
Preference number: 5 (lower is better) Translates to: IGNPAIAFCRDGARERGRSFRFL*KDRPLN Trigger: ATTGAGTGGCCTGTCCTTCAAGAGAAATCGGAAGGA...CCTACCTCTTTCCCGAGCCCCATCCCTGCAGAAGGCAATTGCTGGGTTTCCAAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062356.7
CDS-3UTR CAA 90 bp	ATTGGAAACCCAGCAATTGCCTTCTGCAGGGATGGGGCTCGGGAAAGAGGTAGGGACAGGCCACTCAATTaGAAAGGCTTCTTGAAAGAG	+
Preference number: 5 (lower is better) Translates to: IGNPAIAFCRDGARERGRDRPLN*KGFLKE Trigger: CTCTTTCAAGAAGCCTTTCAAATTGAGTGGCCTGTC...CCTACCTCTTTCCCGAGCCCCATCCCTGCAGAAGGCAATTGCTGGGTTTCCAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062356.7
CDS CAA 72 bp	AGGCGCTCATCTCGCCCTGCTCCTGCTCTTCCTCTGTaGGCGAGGAGGCTGAGGAATCACCCCCACCCTCCT	+
Preference number: 6 (lower is better) Translates to: RRSSRPAPALPL*ARRLRNHPHPP Trigger: AGGAGGGTGGGGGTGATTCCTCAGCCTCCTCGCCAACAGAGGAAGAGCAGGAGCAGGGCGAGATGAGCGCCT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062356.7