Pregenerated sensors for MARCHF9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040502Ensembl transcript IDs: ENSMUST00000040307.6
Found 75 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CGGTGTCTGTGGGAACTGGAACGTCACCCAGGGGTCTCTACCCTGTaGGCAGTAGGCCGGACAATGTCTCCAAGCTGGCGGCTGTCCACA | + |
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Preference number: 1 (lower is better) Translates to: RCLWELERHPGVSTL*AVGRTMSPSWRLST Trigger: TGTGGACAGCCGCCAGCTTGGAGACATTGTCCGGCCTACTGCCCACAGGGTAGAGACCCCTGGGTGACGTTCCAGTTCCCACAGACACCG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| 3UTR CCA 90 bp | CAGGCTGTGCAGTCCCAGCTGCCCCTCCACCCCAGGTCCGGTGTTTaGAGGGTCAGAAGGGTTCTCGATCCTACAACGGCCACTGTCCTA | + |
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Preference number: 1 (lower is better) Translates to: QAVQSQLPLHPRSGV*RVRRVLDPTTATVL Trigger: TAGGACAGTGGCCGTTGTAGGATCGAGAACCCTTCTGACCCTCCAAACACCGGACCTGGGGTGGAGGGGCAGCTGGGACTGCACAGCCTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| 3UTR CCA 90 bp | GACAATGTCTCCAAGCTGGCGGCTGTCCACAGAGATCCTCAGTGGTaGGGTCACCGTGCCCCAAACACGTTGTCTAGGTCGTACCTCCAG | + |
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Preference number: 1 (lower is better) Translates to: DNVSKLAAVHRDPQW*GHRAPNTLSRSYLQ Trigger: CTGGAGGTACGACCTAGACAACGTGTTTGGGGCACGGTGACCCCACCACTGAGGATCTCTGTGGACAGCCGCCAGCTTGGAGACATTGTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| 3UTR CCA 90 bp | GCATTGGTCTCCCTTTACCAAGTCACCATGGTGGAGCCAGGGGACTaGAGGCTTAAAGCTGAGGTAAAGATGGTTCTCTCCAGGAAGAAA | + |
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Preference number: 1 (lower is better) Translates to: ALVSLYQVTMVEPGD*RLKAEVKMVLSRKK Trigger: TTTCTTCCTGGAGAGAACCATCTTTACCTCAGCTTTAAGCCTCCAGTCCCCTGGCTCCACCATGGTGACTTGGTAAAGGGAGACCAATGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| 3UTR GCA 90 bp | ACAACGGCCACTGTCCTACACAGTTGCAGTATCGACTTCCTCTTTTaGTTCTCTACTTTGTCTCTCAAAAACACCAAAGTTCTGTGCCGC | + |
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Preference number: 1 (lower is better) Translates to: TTATVLHSCSIDFLF*FSTLSLKNTKVLCR Trigger: GCGGCACAGAACTTTGGTGTTTTTGAGAGACAAAGTAGAGAAGCAAAAGAGGAAGTCGATACTGCAACTGTGTAGGACAGTGGCCGTTGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| 3UTR GCA 90 bp | GTCAGAAGGGTTCTCGATCCTACAACGGCCACTGTCCTACACAGTTaGAGTATCGACTTCCTCTTTTGCTTCTCTACTTTGTCTCTCAAA | + |
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Preference number: 1 (lower is better) Translates to: VRRVLDPTTATVLHS*SIDFLFCFSTLSLK Trigger: TTTGAGAGACAAAGTAGAGAAGCAAAAGAGGAAGTCGATACTGCAACTGTGTAGGACAGTGGCCGTTGTAGGATCGAGAACCCTTCTGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| 3UTR CCA 90 bp | TTCTTACGCCTCTCTCTCTCAGTAATACCATTAGCCGGGCACACCTaGATCAAACCTGTGATCCTAAACTGCCACAGAAAATGTCTCAAT | + |
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Preference number: 1 (lower is better) Translates to: FLRLSLSVIPLAGHT*IKPVILNCHRKCLN Trigger: ATTGAGACATTTTCTGTGGCAGTTTAGGATCACAGGTTTGATCCAGGTGTGCCCGGCTAATGGTATTACTGAGAGAGAGAGGCGTAAGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| 3UTR CAA 90 bp | GTCCACAGAGATCCTCAGTGGTGGGGTCACCGTGCCCCAAACACGTaGTCTAGGTCGTACCTCCAGCAGCCGGGAGGGCTCGCCTCTGGC | + |
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Preference number: 2 (lower is better) Translates to: VHRDPQWWGHRAPNT*SRSYLQQPGGLASG Trigger: GCCAGAGGCGAGCCCTCCCGGCTGCTGGAGGTACGACCTAGACAACGTGTTTGGGGCACGGTGACCCCACCACTGAGGATCTCTGTGGAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| 3UTR CAA 90 bp | ACAGGCTGTGCAGTCCCAGCTGCCCCTCCACCCCAGGTCCGGTGTTaGGAGGGTCAGAAGGGTTCTCGATCCTACAACGGCCACTGTCCT | + |
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Preference number: 2 (lower is better) Translates to: TGCAVPAAPPPQVRC*EGQKGSRSYNGHCP Trigger: AGGACAGTGGCCGTTGTAGGATCGAGAACCCTTCTGACCCTCCAAACACCGGACCTGGGGTGGAGGGGCAGCTGGGACTGCACAGCCTGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| 3UTR-3UTR CCA 90 bp | ACACAGTACCTGAAGGAAAGGGCTGTTCTCAGACAGGCTGTGCAGTCCCAGCTGATGAGGCGGTGTCTGTaGGAACTGGAACGTCACCCA | + |
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Preference number: 2 (lower is better) Translates to: TQYLKERAVLRQAVQSQLMRRCL*ELERHP Trigger: TGGGTGACGTTCCAGTTCCCACAGACACCGCCTCAT...CAGCTGGGACTGCACAGCCTGTCTGAGAACAGCCCTTTCCTTCAGGTACTGTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| 3UTR CAA 90 bp | GAGGTAAAGATGGTTCTCTCCAGGAAGAAAAGTGGTTCTCCCCGCTaGCCTGCTGGCCATCCTCAAGGTGAGTATGAGGCGGTGTCTGTG | + |
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Preference number: 2 (lower is better) Translates to: EVKMVLSRKKSGSPR*PAGHPQGEYEAVSV Trigger: CACAGACACCGCCTCATACTCACCTTGAGGATGGCCAGCAGGCAAGCGGGGAGAACCACTTTTCTTCCTGGAGAGAACCATCTTTACCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| 3UTR-3UTR GCA 90 bp | CTCCTGGCTTCAGGAGGAAGGGAATCAAGCTTCAAGCTGACCCACATAGTTCTTCGCACCTCTGGGAAGTaGAACCCAACCCGTGCTGAG | + |
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Preference number: 2 (lower is better) Translates to: LLASGGRESSFKLTHIVLRTSGK*NPTRAE Trigger: CTCAGCACGGGTTGGGTTGCACTTCCCAGAGGTGCG...AAGAACTATGTGGGTCAGCTTGAAGCTTGATTCCCTTCCTCCTGAAGCCAGGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| 3UTR-3UTR GCA 90 bp | TCAGTAATACCATTAGCCGGGCACACCTGGATCAAACCTGTGATCCTAAACTGCGTGGTTCTCCCCGCTTaGCTGCTGGCCATCCTCAAG | + |
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Preference number: 2 (lower is better) Translates to: SVIPLAGHTWIKPVILNCVVLPA*LLAILK Trigger: CTTGAGGATGGCCAGCAGGCAAGCGGGGAGAACCAC...GCAGTTTAGGATCACAGGTTTGATCCAGGTGTGCCCGGCTAATGGTATTACTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| 3UTR-3UTR CCA 90 bp | CTCCTGGCTTCAGGAGGAAGGGAATCAAGCTTCAAGCTGACCCACATAGTTCTTCTCCAGGAAGAAAAGTaGTTCTCCCCGCTTGCCTGC | + |
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Preference number: 2 (lower is better) Translates to: LLASGGRESSFKLTHIVLLQEEK*FSPLAC Trigger: GCAGGCAAGCGGGGAGAACCACTTTTCTTCCTGGAG...AAGAACTATGTGGGTCAGCTTGAAGCTTGATTCCCTTCCTCCTGAAGCCAGGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| 3UTR-3UTR TCA 90 bp | CATAACACTGAGGGAGGAGGCTCTGTCCCCATCACCCTAATTGAGTCCATGTTGCTCTGGCTGATGCATTaGCTTAAGATCCCTGTTCCT | + |
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Preference number: 2 (lower is better) Translates to: HNTEGGGSVPITLIESMLLWLMH*LKIPVP Trigger: AGGAACAGGGATCTTAAGTCAATGCATCAGCCAGAG...CAACATGGACTCAATTAGGGTGATGGGGACAGAGCCTCCTCCCTCAGTGTTATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| 3UTR-3UTR GCA 90 bp | ACACAGTACCTGAAGGAAAGGGCTGTTCTCAGACAGGCTGTGCAGTCCCAGCTGACTGTCCTACACAGTTaGAGTATCGACTTCCTCTTT | + |
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Preference number: 2 (lower is better) Translates to: TQYLKERAVLRQAVQSQLTVLHS*SIDFLF Trigger: AAAGAGGAAGTCGATACTGCAACTGTGTAGGACAGT...CAGCTGGGACTGCACAGCCTGTCTGAGAACAGCCCTTTCCTTCAGGTACTGTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| 3UTR-3UTR CCA 90 bp | TCAGTAATACCATTAGCCGGGCACACCTGGATCAAACCTGTGATCCTAAACTGCTTTACCAAGTCACCATaGTGGAGCCAGGGGACTGGA | + |
|
Preference number: 2 (lower is better) Translates to: SVIPLAGHTWIKPVILNCFTKSP*WSQGTG Trigger: TCCAGTCCCCTGGCTCCACCATGGTGACTTGGTAAA...GCAGTTTAGGATCACAGGTTTGATCCAGGTGTGCCCGGCTAATGGTATTACTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| 3UTR-3UTR CCA 90 bp | ACACAGTACCTGAAGGAAAGGGCTGTTCTCAGACAGGCTGTGCAGTCCCAGCTGCTTGTTTTCTGGCATTaGTCTCCCTTTACCAAGTCA | + |
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Preference number: 2 (lower is better) Translates to: TQYLKERAVLRQAVQSQLLVFWH*SPFTKS Trigger: TGACTTGGTAAAGGGAGACCAATGCCAGAAAACAAG...CAGCTGGGACTGCACAGCCTGTCTGAGAACAGCCCTTTCCTTCAGGTACTGTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| 3UTR-3UTR CCA 90 bp | CTCCTGGCTTCAGGAGGAAGGGAATCAAGCTTCAAGCTGACCCACATAGTTCTTCAGCCCCTTGTTTTCTaGCATTGGTCTCCCTTTACC | + |
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Preference number: 2 (lower is better) Translates to: LLASGGRESSFKLTHIVLQPLVF*HWSPFT Trigger: GGTAAAGGGAGACCAATGCCAGAAAACAAGGGGCTG...AAGAACTATGTGGGTCAGCTTGAAGCTTGATTCCCTTCCTCCTGAAGCCAGGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| 3UTR-3UTR GCA 90 bp | ACACAGTACCTGAAGGAAAGGGCTGTTCTCAGACAGGCTGTGCAGTCCCAGCTGATCGACTTCCTCTTTTaGTTCTCTACTTTGTCTCTC | + |
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Preference number: 2 (lower is better) Translates to: TQYLKERAVLRQAVQSQLIDFLF*FSTLSL Trigger: GAGAGACAAAGTAGAGAAGCAAAAGAGGAAGTCGAT...CAGCTGGGACTGCACAGCCTGTCTGAGAACAGCCCTTTCCTTCAGGTACTGTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| 3UTR CAA 90 bp | GGTCAGAAGGGTTCTCGATCCTACAACGGCCACTGTCCTACACAGTaGCAGTATCGACTTCCTCTTTTGCTTCTCTACTTTGTCTCTCAA | + |
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Preference number: 2 (lower is better) Translates to: GQKGSRSYNGHCPTQ*QYRLPLLLLYFVSQ Trigger: TTGAGAGACAAAGTAGAGAAGCAAAAGAGGAAGTCGATACTGCAACTGTGTAGGACAGTGGCCGTTGTAGGATCGAGAACCCTTCTGACC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| 3UTR-3UTR TCA 90 bp | TCAGTAATACCATTAGCCGGGCACACCTGGATCAAACCTGTGATCCTAAACTGCTTATCCTCGAGTCTGTaGGGTAGACAGGAAGAAAAA | + |
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Preference number: 2 (lower is better) Translates to: SVIPLAGHTWIKPVILNCLSSSL*GRQEEK Trigger: TTTTTCTTCCTGTCTACCTCACAGACTCGAGGATAA...GCAGTTTAGGATCACAGGTTTGATCCAGGTGTGCCCGGCTAATGGTATTACTGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| 3UTR-3UTR GCA 90 bp | AGTCCGGAACCCTTTATACACCCGTCAGTTTTCTCTGTCATAGTATTCAACCTGATAAATGATTCTTTATaGCCTTCCCCCATGCAGTGG | + |
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Preference number: 2 (lower is better) Translates to: SPEPFIHPSVFSVIVFNLINDSL*PSPMQW Trigger: CCACTGCATGGGGGAAGGGCATAAAGAATCATTTAT...CAGGTTGAATACTATGACAGAGAAAACTGACGGGTGTATAAAGGGTTCCGGACT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| 3UTR-3UTR TCA 90 bp | ACCCACATTCCCCAAATCCTTTCTATAATAAATAAGAGTTCTTACGCCTCTCTCCCACGCGCATATAAATaGTTCTTTATGCCCTTCCCC | + |
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Preference number: 2 (lower is better) Translates to: THIPQILSIINKSSYASLPRAYK*FFMPFP Trigger: GGGGAAGGGCATAAAGAATCATTTATATGCGCGTGG...GAGAGAGGCGTAAGAACTCTTATTTATTATAGAAAGGATTTGGGGAATGTGGGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| 3UTR CCA 72 bp | CAGTCCCAGCTGCCCCTCCACCCCAGGTCCGGTGTTTaGAGGGTCAGAAGGGTTCTCGATCCTACAACGGCC | + |
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Preference number: 3 (lower is better) Translates to: QSQLPLHPRSGV*RVRRVLDPTTA Trigger: GGCCGTTGTAGGATCGAGAACCCTTCTGACCCTCCAAACACCGGACCTGGGGTGGAGGGGCAGCTGGGACTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| 3UTR GCA 72 bp | AAAGGGCTGTTCTCAGACAGGCTGTGCAGTCCCAGCTaGCCCTCCACCCCAGGTCCGGTGTTTGGAGGGTCA | + |
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Preference number: 3 (lower is better) Translates to: KGLFSDRLCSPS*PSTPGPVFGGS Trigger: TGACCCTCCAAACACCGGACCTGGGGTGGAGGGGCAGCTGGGACTGCACAGCCTGTCTGAGAACAGCCCTTT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| 3UTR CCA 72 bp | TGGGAACTGGAACGTCACCCAGGGGTCTCTACCCTGTaGGCAGTAGGCCGGACAATGTCTCCAAGCTGGCGG | + |
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Preference number: 3 (lower is better) Translates to: WELERHPGVSTL*AVGRTMSPSWR Trigger: CCGCCAGCTTGGAGACATTGTCCGGCCTACTGCCCACAGGGTAGAGACCCCTGGGTGACGTTCCAGTTCCCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| 3UTR CCA 72 bp | TCCAAGCTGGCGGCTGTCCACAGAGATCCTCAGTGGTaGGGTCACCGTGCCCCAAACACGTTGTCTAGGTCG | + |
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Preference number: 3 (lower is better) Translates to: SKLAAVHRDPQW*GHRAPNTLSRS Trigger: CGACCTAGACAACGTGTTTGGGGCACGGTGACCCCACCACTGAGGATCTCTGTGGACAGCCGCCAGCTTGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| 3UTR TCA 72 bp | CAAGCCCACACCCCGTCCTCAGCTACCTCTGAGCACTaGCACCTAGCAGCCAAGGTGAGTCACTCACCAGCA | + |
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Preference number: 3 (lower is better) Translates to: QAHTPSSATSEH*HLAAKVSHSPA Trigger: TGCTGGTGAGTGACTCACCTTGGCTGCTAGGTGTCAGTGCTCAGAGGTAGCTGAGGACGGGGTGTGGGCTTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| 3UTR CCA 72 bp | CTGGCCATCCTCAAGGTGAGTATGAGGCGGTGTCTGTaGGAACTGGAACGTCACCCAGGGGTCTCTACCCTG | + |
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Preference number: 3 (lower is better) Translates to: LAILKVSMRRCL*ELERHPGVSTL Trigger: CAGGGTAGAGACCCCTGGGTGACGTTCCAGTTCCCACAGACACCGCCTCATACTCACCTTGAGGATGGCCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| 3UTR GCA 72 bp | TGGTTCTCTCCAGGAAGAAAAGTGGTTCTCCCCGCTTaGCTGCTGGCCATCCTCAAGGTGAGTATGAGGCGG | + |
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Preference number: 3 (lower is better) Translates to: WFSPGRKVVLPA*LLAILKVSMRR Trigger: CCGCCTCATACTCACCTTGAGGATGGCCAGCAGGCAAGCGGGGAGAACCACTTTTCTTCCTGGAGAGAACCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| 3UTR-3UTR CAA 90 bp | CATAACACTGAGGGAGGAGGCTCTGTCCCCATCACCCTAATTGAGTCCATGTTGCGTGCCCCAAACACGTaGTCTAGGTCGTACCTCCAG | + |
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Preference number: 3 (lower is better) Translates to: HNTEGGGSVPITLIESMLRAPNT*SRSYLQ Trigger: CTGGAGGTACGACCTAGACAACGTGTTTGGGGCACG...CAACATGGACTCAATTAGGGTGATGGGGACAGAGCCTCCTCCCTCAGTGTTATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| 3UTR CCA 72 bp | GTTTTCTGGCATTGGTCTCCCTTTACCAAGTCACCATaGTGGAGCCAGGGGACTGGAGGCTTAAAGCTGAGG | + |
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Preference number: 3 (lower is better) Translates to: VFWHWSPFTKSP*WSQGTGGLKLR Trigger: CCTCAGCTTTAAGCCTCCAGTCCCCTGGCTCCACCATGGTGACTTGGTAAAGGGAGACCAATGCCAGAAAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| 3UTR CCA 72 bp | TCCCTTTACCAAGTCACCATGGTGGAGCCAGGGGACTaGAGGCTTAAAGCTGAGGTAAAGATGGTTCTCTCC | + |
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Preference number: 3 (lower is better) Translates to: SLYQVTMVEPGD*RLKAEVKMVLS Trigger: GGAGAGAACCATCTTTACCTCAGCTTTAAGCCTCCAGTCCCCTGGCTCCACCATGGTGACTTGGTAAAGGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| 3UTR-3UTR CAA 90 bp | ACGGGAGGTCAATGTTTAGTAGTCTTATTGCCAGATGCCCTGTGGCCATGGGGTCCTTGTTTTCTGGCATaGGTCTCCCTTTACCAAGTC | + |
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Preference number: 3 (lower is better) Translates to: TGGQCLVVLLPDALWPWGPCFLA*VSLYQV Trigger: GACTTGGTAAAGGGAGACCAATGCCAGAAAACAAGG...ACCCCATGGCCACAGGGCATCTGGCAATAAGACTACTAAACATTGACCTCCCGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| 3UTR CCA 72 bp | CTCTCTCTCTCAGTAATACCATTAGCCGGGCACACCTaGATCAAACCTGTGATCCTAAACTGCCACAGAAAA | + |
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Preference number: 3 (lower is better) Translates to: LSLSVIPLAGHT*IKPVILNCHRK Trigger: TTTTCTGTGGCAGTTTAGGATCACAGGTTTGATCCAGGTGTGCCCGGCTAATGGTATTACTGAGAGAGAGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| 3UTR TCA 72 bp | TTGTCTCTCAAAAACACCAAAGTTCTGTGCCGCTTCTaGCAGAAACCACATTTCAGAACTTGCTCTATCACC | + |
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Preference number: 3 (lower is better) Translates to: LSLKNTKVLCRF*QKPHFRTCSIT Trigger: GGTGATAGAGCAAGTTCTGAAATGTGGTTTCTGTCAGAAGCGGCACAGAACTTTGGTGTTTTTGAGAGACAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| CDS-3UTR GCA 90 bp | CTCCAAGCTGGCGGCTGTCCACAGAGATCCTCAGTGGTGGGGTCACCGTGCCCCGCGTCCGCATGCGCATaGGCTGGGCTGCTGGGGGCC | + |
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Preference number: 4 (lower is better) Translates to: LQAGGCPQRSSVVGSPCPASACA*AGLLGA Trigger: GGCCCCCAGCAGCCCAGCGCATGCGCATGCGGACGC...GGGGCACGGTGACCCCACCACTGAGGATCTCTGTGGACAGCCGCCAGCTTGGAG 70% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| CDS-3UTR GCA 90 bp | CTCCAAGCTGGCGGCTGTCCACAGAGATCCTCAGTGGTGGGGTCACCGTGCCCCGCAAGAGCGTCCGCATaGGCATGCGCTGGGCTGCTG | + |
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Preference number: 4 (lower is better) Translates to: LQAGGCPQRSSVVGSPCPARASA*ACAGLL Trigger: CAGCAGCCCAGCGCATGCGCATGCGGACGCTCTTGC...GGGGCACGGTGACCCCACCACTGAGGATCTCTGTGGACAGCCGCCAGCTTGGAG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| CDS-3UTR CCA 90 bp | CTCCAAGCTGGCGGCTGTCCACAGAGATCCTCAGTGGTGGGGTCACCGTGCCCCGGAACGGGCATCTGGTaGTCGCAGCTGTCCGAGGAG | + |
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Preference number: 4 (lower is better) Translates to: LQAGGCPQRSSVVGSPCPGTGIW*SQLSEE Trigger: CTCCTCGGACAGCTGCGACCACCAGATGCCCGTTCC...GGGGCACGGTGACCCCACCACTGAGGATCTCTGTGGACAGCCGCCAGCTTGGAG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| 3UTR CAA 72 bp | GCAGTCCCAGCTGCCCCTCCACCCCAGGTCCGGTGTTaGGAGGGTCAGAAGGGTTCTCGATCCTACAACGGC | + |
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Preference number: 4 (lower is better) Translates to: AVPAAPPPQVRC*EGQKGSRSYNG Trigger: GCCGTTGTAGGATCGAGAACCCTTCTGACCCTCCAAACACCGGACCTGGGGTGGAGGGGCAGCTGGGACTGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| CDS-3UTR CCA 90 bp | CATAACACTGAGGGAGGAGGCTCTGTCCCCATCACCCTAATTGAGTCCATGTTGTGGTCCGTGAGGTCCTaGGGCCTGGCTTCCCTGCCG | + |
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Preference number: 4 (lower is better) Translates to: HNTEGGGSVPITLIESMLWSVRS*GLASLP Trigger: CGGCAGGGAAGCCAGGCCCCAGGACCTCACGGACCA...CAACATGGACTCAATTAGGGTGATGGGGACAGAGCCTCCTCCCTCAGTGTTATG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| CDS-3UTR TCA 90 bp | CTCCTGGCTTCAGGAGGAAGGGAATCAAGCTTCAAGCTGACCCACATAGTTCTTGCGCTGCCACTTGGCTaGAGGGCTGAGCGAGGACCA | + |
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Preference number: 4 (lower is better) Translates to: LLASGGRESSFKLTHIVLALPLG*RAERGP Trigger: TGGTCCTCGCTCAGCCCTTCAGCCAAGTGGCAGCGC...AAGAACTATGTGGGTCAGCTTGAAGCTTGATTCCCTTCCTCCTGAAGCCAGGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| CDS-3UTR GCA 90 bp | GGGGGAACACAGTACCTGAAGGAAAGGGCTGTTCTCAGACAGGCTGTGCAGTCCGAGATGGCCTGCCACTaGAGTGGATTCTTGGTGCTG | + |
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Preference number: 4 (lower is better) Translates to: GGTQYLKERAVLRQAVQSEMACH*SGFLVL Trigger: CAGCACCAAGAATCCACTGCAGTGGCAGGCCATCTC...GGACTGCACAGCCTGTCTGAGAACAGCCCTTTCCTTCAGGTACTGTGTTCCCCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| CDS-3UTR GCA 90 bp | GGGGGAACACAGTACCTGAAGGAAAGGGCTGTTCTCAGACAGGCTGTGCAGTCCGTCAGGGAGATGGCCTaGCACTGCAGTGGATTCTTG | + |
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Preference number: 4 (lower is better) Translates to: GGTQYLKERAVLRQAVQSVREMA*HCSGFL Trigger: CAAGAATCCACTGCAGTGGCAGGCCATCTCCCTGAC...GGACTGCACAGCCTGTCTGAGAACAGCCCTTTCCTTCAGGTACTGTGTTCCCCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| CDS-3UTR GCA 90 bp | GTCACCATGGTGGAGCCAGGGGACTGGAGGCTTAAAGCTGAGGTAAAGATGGTTTGCTGGTTCACGGCCTaGCAGCGCTTGAAGATGCGG | + |
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Preference number: 4 (lower is better) Translates to: VTMVEPGDWRLKAEVKMVCWFTA*QRLKMR Trigger: CCGCATCTTCAAGCGCTGGCAGGCCGTGAACCAGCA...AACCATCTTTACCTCAGCTTTAAGCCTCCAGTCCCCTGGCTCCACCATGGTGAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| CDS-3UTR CCA 90 bp | ACACAGTACCTGAAGGAAAGGGCTGTTCTCAGACAGGCTGTGCAGTCCCAGCTGGGCCTGCCACTGCAGTaGATTCTTGGTGCTGATCGC | + |
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Preference number: 4 (lower is better) Translates to: TQYLKERAVLRQAVQSQLGLPLQ*ILGADR Trigger: GCGATCAGCACCAAGAATCCACTGCAGTGGCAGGCC...CAGCTGGGACTGCACAGCCTGTCTGAGAACAGCCCTTTCCTTCAGGTACTGTGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| CDS-3UTR TCA 90 bp | GTCACCATGGTGGAGCCAGGGGACTGGAGGCTTAAAGCTGAGGTAAAGATGGTTATGAGCCCCTCTCACTaGTCCAGCGGATTAGGCAGG | + |
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Preference number: 4 (lower is better) Translates to: VTMVEPGDWRLKAEVKMVMSPSH*SSGLGR Trigger: CCTGCCTAATCCGCTGGATCAGTGAGAGGGGCTCAT...AACCATCTTTACCTCAGCTTTAAGCCTCCAGTCCCCTGGCTCCACCATGGTGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| CDS-3UTR TCA 90 bp | GTCACCATGGTGGAGCCAGGGGACTGGAGGCTTAAAGCTGAGGTAAAGATGGTTCGGCCTGCCAGCGCTTaGAGATGCGGTAAACAGAAG | + |
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Preference number: 4 (lower is better) Translates to: VTMVEPGDWRLKAEVKMVRPASA*RCGKQK Trigger: CTTCTGTTTACCGCATCTTCAAGCGCTGGCAGGCCG...AACCATCTTTACCTCAGCTTTAAGCCTCCAGTCCCCTGGCTCCACCATGGTGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| CDS-3UTR GCA 90 bp | CATAACACTGAGGGAGGAGGCTCTGTCCCCATCACCCTAATTGAGTCCATGTTGGGCAGGGTTGGTGTGTaGAACGCACTGAGCCGTCAC | + |
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Preference number: 4 (lower is better) Translates to: HNTEGGGSVPITLIESMLGRVGV*NALSRH Trigger: GTGACGGCTCAGTGCGTTGCACACACCAACCCTGCC...CAACATGGACTCAATTAGGGTGATGGGGACAGAGCCTCCTCCCTCAGTGTTATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| CDS-3UTR CCA 90 bp | CTCCTGGCTTCAGGAGGAAGGGAATCAAGCTTCAAGCTGACCCACATAGTTCTTGCTGGAACGGGCATCTaGTGGTCGCAGCTGTCCGAG | + |
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Preference number: 4 (lower is better) Translates to: LLASGGRESSFKLTHIVLAGTGI*WSQLSE Trigger: CTCGGACAGCTGCGACCACCAGATGCCCGTTCCAGC...AAGAACTATGTGGGTCAGCTTGAAGCTTGATTCCCTTCCTCCTGAAGCCAGGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| 3UTR CAA 72 bp | ATGGTTCTCTCCAGGAAGAAAAGTGGTTCTCCCCGCTaGCCTGCTGGCCATCCTCAAGGTGAGTATGAGGCG | + |
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Preference number: 4 (lower is better) Translates to: MVLSRKKSGSPR*PAGHPQGEYEA Trigger: CGCCTCATACTCACCTTGAGGATGGCCAGCAGGCAAGCGGGGAGAACCACTTTTCTTCCTGGAGAGAACCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| CDS-3UTR TCA 90 bp | ACACAGTACCTGAAGGAAAGGGCTGTTCTCAGACAGGCTGTGCAGTCCCAGCTGTGCAGACGACATCCATaGAGCCGTACATGCCATAGC | + |
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Preference number: 4 (lower is better) Translates to: TQYLKERAVLRQAVQSQLCRRHP*SRTCHS Trigger: GCTATGGCATGTACGGCTTCATGGATGTCGTCTGCA...CAGCTGGGACTGCACAGCCTGTCTGAGAACAGCCCTTTCCTTCAGGTACTGTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| CDS-3UTR CCA 90 bp | GGGGGAACACAGTACCTGAAGGAAAGGGCTGTTCTCAGACAGGCTGTGCAGTCCACGATAGCAGCAATCTaGACCTTCTCGATGACGGTC | + |
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Preference number: 4 (lower is better) Translates to: GGTQYLKERAVLRQAVQSTIAAI*TFSMTV Trigger: GACCGTCATCGAGAAGGTCCAGATTGCTGCTATCGT...GGACTGCACAGCCTGTCTGAGAACAGCCCTTTCCTTCAGGTACTGTGTTCCCCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| CDS-3UTR TCA 90 bp | CATAACACTGAGGGAGGAGGCTCTGTCCCCATCACCCTAATTGAGTCCATGTTGAAGCTCACAGCTCCATaGGCCCCTCTCACTGATCCA | + |
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Preference number: 4 (lower is better) Translates to: HNTEGGGSVPITLIESMLKLTAP*APLTDP Trigger: TGGATCAGTGAGAGGGGCTCATGGAGCTGTGAGCTT...CAACATGGACTCAATTAGGGTGATGGGGACAGAGCCTCCTCCCTCAGTGTTATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| CDS-3UTR TCA 90 bp | ACGGGAGGTCAATGTTTAGTAGTCTTATTGCCAGATGCCCTGTGGCCATGGGGTACCTCTCGACCAGAATaGGAGCTGGAACGGGCATCT | + |
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Preference number: 4 (lower is better) Translates to: TGGQCLVVLLPDALWPWGTSRPE*ELERAS Trigger: AGATGCCCGTTCCAGCTCTCATTCTGGTCGAGAGGT...ACCCCATGGCCACAGGGCATCTGGCAATAAGACTACTAAACATTGACCTCCCGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| CDS-3UTR CCA 90 bp | TGGAGGCTTAAAGCTGAGGTAAAGATGGTTCTCTCCAGGAAGAAAAGTGGTTCTCCCTGCTCCGGGCCTTaGAAGCAGATCCTGCACTGG | + |
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Preference number: 4 (lower is better) Translates to: WRLKAEVKMVLSRKKSGSPCSGP*KQILHW Trigger: CCAGTGCAGGATCTGCTTCCAAGGCCCGGAGCAGGG...AGAACCACTTTTCTTCCTGGAGAGAACCATCTTTACCTCAGCTTTAAGCCTCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| CDS-3UTR TCA 90 bp | TCAGTAATACCATTAGCCGGGCACACCTGGATCAAACCTGTGATCCTAAACTGCGTGGATTCTTGGTGCTaGTCGCCAGGACCTGGTACT | + |
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Preference number: 4 (lower is better) Translates to: SVIPLAGHTWIKPVILNCVDSWC*SPGPGT Trigger: AGTACCAGGTCCTGGCGATCAGCACCAAGAATCCAC...GCAGTTTAGGATCACAGGTTTGATCCAGGTGTGCCCGGCTAATGGTATTACTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| CDS-3UTR CCA 90 bp | AGTCCGGAACCCTTTATACACCCGTCAGTTTTCTCTGTCATAGTATTCAACCTGAAGCAGATCCTGCACTaGGGGGTTCGGAGCCCACTG | + |
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Preference number: 4 (lower is better) Translates to: SPEPFIHPSVFSVIVFNLKQILH*GVRSPL Trigger: CAGTGGGCTCCGAACCCCCCAGTGCAGGATCTGCTT...CAGGTTGAATACTATGACAGAGAAAACTGACGGGTGTATAAAGGGTTCCGGACT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| CDS-3UTR CCA 90 bp | TCAGTAATACCATTAGCCGGGCACACCTGGATCAAACCTGTGATCCTAAACTGCGACCAGAATGAGAGCTaGAACGGGCATCTGGTGGTC | + |
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Preference number: 4 (lower is better) Translates to: SVIPLAGHTWIKPVILNCDQNES*NGHLVV Trigger: GACCACCAGATGCCCGTTCCAGCTCTCATTCTGGTC...GCAGTTTAGGATCACAGGTTTGATCCAGGTGTGCCCGGCTAATGGTATTACTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| 3UTR CAA 72 bp | AGGGAATCAAGCTTCAAGCTGACCCACATAGTTCTTTaGGTGGTAGGGGAGTTAGCCCCAGGACCACATGCA | + |
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Preference number: 4 (lower is better) Translates to: RESSFKLTHIVL*VVGELAPGPHA Trigger: TGCATGTGGTCCTGGGGCTAACTCCCCTACCACCAAAAGAACTATGTGGGTCAGCTTGAAGCTTGATTCCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| CDS-3UTR TCA 90 bp | AGTCCGGAACCCTTTATACACCCGTCAGTTTTCTCTGTCATAGTATTCAACCTGTCTGGACCTTCTCGATaGCGGTCAGGGAGATGGCCT | + |
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Preference number: 4 (lower is better) Translates to: SPEPFIHPSVFSVIVFNLSGPSR*RSGRWP Trigger: AGGCCATCTCCCTGACCGTCATCGAGAAGGTCCAGA...CAGGTTGAATACTATGACAGAGAAAACTGACGGGTGTATAAAGGGTTCCGGACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| CDS-3UTR CCA 90 bp | TGGAGGCTTAAAGCTGAGGTAAAGATGGTTCTCTCCAGGAAGAAAAGTGGTTCTTGGAAGAGGAGGTCCTaGCGCTGCCACTTGGCTGAA | + |
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Preference number: 4 (lower is better) Translates to: WRLKAEVKMVLSRKKSGSWKRRS*RCHLAE Trigger: TTCAGCCAAGTGGCAGCGCCAGGACCTCCTCTTCCA...AGAACCACTTTTCTTCCTGGAGAGAACCATCTTTACCTCAGCTTTAAGCCTCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| CDS-3UTR GCA 90 bp | ACCCACATTCCCCAAATCCTTTCTATAATAAATAAGAGTTCTTACGCCTCTCTCAGGAGGTCCTGGCGCTaGCACTTGGCTGAAGGGCTG | + |
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Preference number: 4 (lower is better) Translates to: THIPQILSIINKSSYASLRRSWR*HLAEGL Trigger: CAGCCCTTCAGCCAAGTGGCAGCGCCAGGACCTCCT...GAGAGAGGCGTAAGAACTCTTATTTATTATAGAAAGGATTTGGGGAATGTGGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| 3UTR CAA 72 bp | GGTTCTCGATCCTACAACGGCCACTGTCCTACACAGTaGCAGTATCGACTTCCTCTTTTGCTTCTCTACTTT | + |
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Preference number: 4 (lower is better) Translates to: GSRSYNGHCPTQ*QYRLPLLLLYF Trigger: AAAGTAGAGAAGCAAAAGAGGAAGTCGATACTGCAACTGTGTAGGACAGTGGCCGTTGTAGGATCGAGAACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| 3UTR CAA 72 bp | TCTGTGCCGCTTCTGACAGAAACCACATTTCAGAACTaGCTCTATCACCTACTGTCTAAAGTAATTGGTGGC | + |
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Preference number: 4 (lower is better) Translates to: SVPLLTETTFQN*LYHLLSKVIGG Trigger: GCCACCAATTACTTTAGACAGTAGGTGATAGAGCAAGTTCTGAAATGTGGTTTCTGTCAGAAGCGGCACAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| 3UTR CAA 72 bp | AGTTGCAGTATCGACTTCCTCTTTTGCTTCTCTACTTaGTCTCTCAAAAACACCAAAGTTCTGTGCCGCTTC | + |
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Preference number: 4 (lower is better) Translates to: SCSIDFLFCFST*SLKNTKVLCRF Trigger: GAAGCGGCACAGAACTTTGGTGTTTTTGAGAGACAAAGTAGAGAAGCAAAAGAGGAAGTCGATACTGCAACT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| CDS-3UTR CAA 90 bp | CTCCAAGCTGGCGGCTGTCCACAGAGATCCTCAGTGGTGGGGTCACCGTGCCCCTCCTGGCGCTGCCACTaGGCTGAAGGGCTGAGCGAG | + |
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Preference number: 5 (lower is better) Translates to: LQAGGCPQRSSVVGSPCPSWRCH*AEGLSE Trigger: CTCGCTCAGCCCTTCAGCCAAGTGGCAGCGCCAGGA...GGGGCACGGTGACCCCACCACTGAGGATCTCTGTGGACAGCCGCCAGCTTGGAG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| CDS CCA 90 bp | CATGACAACCTCTCGACCAGAATGAGAGCTGGAACGGGCATCTGGTaGTCGCAGCTGTCCGAGGAGATGCAGGATCGTATAACCACAGCG | + |
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Preference number: 5 (lower is better) Translates to: HDNLSTRMRAGTGIW*SQLSEEMQDRITTA Trigger: CGCTGTGGTTATACGATCCTGCATCTCCTCGGACAGCTGCGACCACCAGATGCCCGTTCCAGCTCTCATTCTGGTCGAGAGGTTGTCATG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| CDS CCA 90 bp | CCTCATGACAACCTCTCGACCAGAATGAGAGCTGGAACGGGCATCTaGTGGTCGCAGCTGTCCGAGGAGATGCAGGATCGTATAACCACA | + |
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Preference number: 5 (lower is better) Translates to: PHDNLSTRMRAGTGI*WSQLSEEMQDRITT Trigger: TGTGGTTATACGATCCTGCATCTCCTCGGACAGCTGCGACCACCAGATGCCCGTTCCAGCTCTCATTCTGGTCGAGAGGTTGTCATGAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| CDS-3UTR CAA 90 bp | AGTCCGGAACCCTTTATACACCCGTCAGTTTTCTCTGTCATAGTATTCAACCTGCACTGCAGTGGATTCTaGGTGCTGATCGCCAGGACC | + |
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Preference number: 5 (lower is better) Translates to: SPEPFIHPSVFSVIVFNLHCSGF*VLIART Trigger: GGTCCTGGCGATCAGCACCAAGAATCCACTGCAGTG...CAGGTTGAATACTATGACAGAGAAAACTGACGGGTGTATAAAGGGTTCCGGACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| CDS GCA 72 bp | TCGTATAACCACAGCGCTGAGGCAAGAGCGTCCGCATaGGCATGCGCTGGGCTGCTGGGGGCCGGGTGGGGG | + |
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Preference number: 6 (lower is better) Translates to: SYNHSAEARASA*ACAGLLGAGWG Trigger: CCCCCACCCGGCCCCCAGCAGCCCAGCGCATGCGCATGCGGACGCTCTTGCCTCAGCGCTGTGGTTATACGA 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| CDS CCA 72 bp | AACCTCTCGACCAGAATGAGAGCTGGAACGGGCATCTaGTGGTCGCAGCTGTCCGAGGAGATGCAGGATCGT | + |
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Preference number: 6 (lower is better) Translates to: NLSTRMRAGTGI*WSQLSEEMQDR Trigger: ACGATCCTGCATCTCCTCGGACAGCTGCGACCACCAGATGCCCGTTCCAGCTCTCATTCTGGTCGAGAGGTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| CDS TCA 72 bp | ACTGTGGTGACCCTCATGACAACCTCTCGACCAGAATaGGAGCTGGAACGGGCATCTGGTGGTCGCAGCTGT | + |
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Preference number: 6 (lower is better) Translates to: TVVTLMTTSRPE*ELERASGGRSC Trigger: ACAGCTGCGACCACCAGATGCCCGTTCCAGCTCTCATTCTGGTCGAGAGGTTGTCATGAGGGTCACCACAGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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| CDS CCA 72 bp | CTCTCGACCAGAATGAGAGCTGGAACGGGCATCTGGTaGTCGCAGCTGTCCGAGGAGATGCAGGATCGTATA | + |
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Preference number: 6 (lower is better) Translates to: LSTRMRAGTGIW*SQLSEEMQDRI Trigger: TATACGATCCTGCATCTCCTCGGACAGCTGCGACCACCAGATGCCCGTTCCAGCTCTCATTCTGGTCGAGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040307.6 |
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