RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MARCHF10 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000078627

Ensembl transcript IDs: ENSMUST00000049995.10, ENSMUST00000100332.4, ENSMUST00000138977.8, ENSMUST00000151305.2

Found 200 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GGGCAGCAGCAGGGCAGCACACGGGGGACTCAGCTGTTTTGCCTGTaGTGGCTGGGATGGTCCCTGTGGCTGCCCACGGATGCTCAAGCC +
Preference number: 1 (lower is better)
Translates to: GQQQGSTRGTQLFCL*WLGWSLWLPTDAQA
Trigger: GGCTTGAGCATCCGTGGGCAGCCACAGGGACCATCCCAGCCAGCACAGGCAAAACAGCTGAGTCCCCCGTGTGCTGCCCTGCTGCTGCCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
3UTR CCA 90 bp AGCAGGGCAGCACACGGGGGACTCAGCTGTTTTGCCTGTGCTGGCTaGGATGGTCCCTGTGGCTGCCCACGGATGCTCAAGCCAGACCCC +
Preference number: 1 (lower is better)
Translates to: SRAAHGGLSCFACAG*DGPCGCPRMLKPDP
Trigger: GGGGTCTGGCTTGAGCATCCGTGGGCAGCCACAGGGACCATCCCAGCCAGCACAGGCAAAACAGCTGAGTCCCCCGTGTGCTGCCCTGCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
3UTR CCA 90 bp CAGCAGCAGGGCAGCACACGGGGGACTCAGCTGTTTTGCCTGTGCTaGCTGGGATGGTCCCTGTGGCTGCCCACGGATGCTCAAGCCAGA +
Preference number: 1 (lower is better)
Translates to: QQQGSTRGTQLFCLC*LGWSLWLPTDAQAR
Trigger: TCTGGCTTGAGCATCCGTGGGCAGCCACAGGGACCATCCCAGCCAGCACAGGCAAAACAGCTGAGTCCCCCGTGTGCTGCCCTGCTGCTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
3UTR-3UTR TCA 90 bp GGGAAGTGTCAGTGCGCTGTCTCCTCTTCCTGTCCCCCTGCACACCACACCCCACTGTCCCCCACTCTCTaGCTCTTTTGTGCTGTGTGC +
Preference number: 2 (lower is better)
Translates to: GKCQCAVSSSCPPAHHTPLSPTL*LFCAVC
Trigger: GCACACAGCACAAAAGAGTCAGAGAGTGGGGGACAG...TGGGGTGTGGTGTGCAGGGGGACAGGAAGAGGAGACAGCGCACTGACACTTCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000100332.4
3UTR-3UTR CCA 90 bp TGCTCAAGCCAGACCCCAAGAAGGAGTGGCACGGGTGAAAATGGTAACTGCGAACACAGAAAGGGCTTCTaGGTGGAGAGGTCTCTGCCG +
Preference number: 2 (lower is better)
Translates to: CSSQTPRRSGTGENGNCEHRKGF*VERSLP
Trigger: CGGCAGAGACCTCTCCACCCAGAAGCCCTTTCTGTG...TTCGCAGTTACCATTTTCACCCGTGCCACTCCTTCTTGGGGTCTGGCTTGAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
3UTR-3UTR CCA 90 bp TCAAGCCAGACCCCAAGAAGGAGTGGCACGGGTGAAAATGGTAACTGCGAACACCACAGAAAGGGCTTCTaGGTGGAGAGGTCTCTGCCG +
Preference number: 2 (lower is better)
Translates to: SSQTPRRSGTGENGNCEHHRKGF*VERSLP
Trigger: CGGCAGAGACCTCTCCACCCAGAAGCCCTTTCTGTG...GTGTTCGCAGTTACCATTTTCACCCGTGCCACTCCTTCTTGGGGTCTGGCTTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
3UTR TCA 72 bp TGCATGGCTCCATTCCACTCAGGGTGGGCGGAGGCCTaGACAGAGGGCCTCAGCACTGGGAGCCCAGGCTGC +
Preference number: 3 (lower is better)
Translates to: CMAPFHSGWAEA*TEGLSTGSPGC
Trigger: GCAGCCTGGGCTCCCAGTGCTGAGGCCCTCTGTTCAGGCCTCCGCCCACCCTGAGTGGAATGGAGCCATGCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
3UTR GCA 72 bp CAGGGCAGCACACGGGGGACTCAGCTGTTTTGCCTGTaGTGGCTGGGATGGTCCCTGTGGCTGCCCACGGAT +
Preference number: 3 (lower is better)
Translates to: QGSTRGTQLFCL*WLGWSLWLPTD
Trigger: ATCCGTGGGCAGCCACAGGGACCATCCCAGCCAGCACAGGCAAAACAGCTGAGTCCCCCGTGTGCTGCCCTG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
3UTR CCA 72 bp CGGGGGACTCAGCTGTTTTGCCTGTGCTGGCTGGGATaGTCCCTGTGGCTGCCCACGGATGCTCAAGCCAGA +
Preference number: 3 (lower is better)
Translates to: RGTQLFCLCWLG*SLWLPTDAQAR
Trigger: TCTGGCTTGAGCATCCGTGGGCAGCCACAGGGACCATCCCAGCCAGCACAGGCAAAACAGCTGAGTCCCCCG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
3UTR CCA 72 bp CAGCTGTTTTGCCTGTGCTGGCTGGGATGGTCCCTGTaGCTGCCCACGGATGCTCAAGCCAGACCCCAAGAA +
Preference number: 3 (lower is better)
Translates to: QLFCLCWLGWSL*LPTDAQARPQE
Trigger: TTCTTGGGGTCTGGCTTGAGCATCCGTGGGCAGCCACAGGGACCATCCCAGCCAGCACAGGCAAAACAGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
3UTR CCA 72 bp TCTCCTCTTCCTGTCCCCCTGCACACCACACCCCATTaGTGTTGCTCTGGCCTGCTCCTGTCCACCTGCCTT +
Preference number: 3 (lower is better)
Translates to: SPLPVPLHTTPH*CCSGLLLSTCL
Trigger: AAGGCAGGTGGACAGGAGCAGGCCAGAGCAACACCAATGGGGTGTGGTGTGCAGGGGGACAGGAAGAGGAGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100332.4
3UTR GCA 72 bp TCCACTAGTAGACGCCCATATCAAGGGAAGTGTCAGTaGGCTGTCTCCTCTTCCTGTCCCCCTGCACACCAC +
Preference number: 3 (lower is better)
Translates to: STSRRPYQGKCQ*AVSSSCPPAHH
Trigger: GTGGTGTGCAGGGGGACAGGAAGAGGAGACAGCGCACTGACACTTCCCTTGATATGGGCGTCTACTAGTGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100332.4
3UTR CAA 72 bp GCAGCAGCAGGGCAGCACACGGGGGACTCAGCTGTTTaGCCTGTGCTGGCTGGGATGGTCCCTGTGGCTGCC +
Preference number: 4 (lower is better)
Translates to: AAAGQHTGDSAV*PVLAGMVPVAA
Trigger: GGCAGCCACAGGGACCATCCCAGCCAGCACAGGCAAAACAGCTGAGTCCCCCGTGTGCTGCCCTGCTGCTGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR CCA 90 bp CCCCCTGCACACCACACCCCATTGGTGTTGCTCTGGCCTGCTCCTGTCCACCTGGAAGTGGAAGGGCTCTaGGCCCCCTGGGCAGCTGGT +
Preference number: 4 (lower is better)
Translates to: PPAHHTPLVLLWPAPVHLEVEGL*APWAAG
Trigger: ACCAGCTGCCCAGGGGGCCCAGAGCCCTTCCACTTC...CAGGTGGACAGGAGCAGGCCAGAGCAACACCAATGGGGTGTGGTGTGCAGGGGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000100332.4
CDS-3UTR TCA 90 bp GGGACTCAGCTGTTTTGCCTGTGCTGGCTGGGATGGTCCCTGTGGCTGCCCACGTGGCTGGAATGTCTGTaGGAGGGCAGTGTGGGGCTC +
Preference number: 4 (lower is better)
Translates to: GTQLFCLCWLGWSLWLPTWLECL*EGSVGL
Trigger: GAGCCCCACACTGCCCTCTCACAGACATTCCAGCCA...CGTGGGCAGCCACAGGGACCATCCCAGCCAGCACAGGCAAAACAGCTGAGTCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR TCA 90 bp GGGGACTCAGCTGTTTTGCCTGTGCTGGCTGGGATGGTCCCTGTGGCTGCCCACTGGCTGGAATGTCTGTaGGAGGGCAGTGTGGGGCTC +
Preference number: 4 (lower is better)
Translates to: GDSAVLPVLAGMVPVAAHWLECL*EGSVGL
Trigger: GAGCCCCACACTGCCCTCTCACAGACATTCCAGCCA...GTGGGCAGCCACAGGGACCATCCCAGCCAGCACAGGCAAAACAGCTGAGTCCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR TCA 90 bp CACGGGGGACTCAGCTGTTTTGCCTGTGCTGGCTGGGATGGTCCCTGTGGCTGCGGTGGCGGGGAGGAGTaGAGGTCCCAAGGACTCATT +
Preference number: 4 (lower is better)
Translates to: HGGLSCFACAGWDGPCGCGGGEE*RSQGLI
Trigger: AATGAGTCCTTGGGACCTTCACTCCTCCCCGCCACC...GCAGCCACAGGGACCATCCCAGCCAGCACAGGCAAAACAGCTGAGTCCCCCGTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR GCA 90 bp CCCCTGCACACCACACCCCATTGGTGTTGCTCTGGCCTGCTCCTGTCCACCTGCACACAGAACAGGGGCTaGTCGCTGCTGTCACCTGGA +
Preference number: 4 (lower is better)
Translates to: PLHTTPHWCCSGLLLSTCTQNRG*SLLSPG
Trigger: TCCAGGTGACAGCAGCGAGCAGCCCCTGTTCTGTGT...GCAGGTGGACAGGAGCAGGCCAGAGCAACACCAATGGGGTGTGGTGTGCAGGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000100332.4
CDS-3UTR CCA 90 bp GGGGACTCAGCTGTTTTGCCTGTGCTGGCTGGGATGGTCCCTGTGGCTGCCCACCTCCGCAGATGCTCTTaGGCTGTGCATCTCTGGGCT +
Preference number: 4 (lower is better)
Translates to: GDSAVLPVLAGMVPVAAHLRRCS*AVHLWA
Trigger: AGCCCAGAGATGCACAGCCCAAGAGCATCTGCGGAG...GTGGGCAGCCACAGGGACCATCCCAGCCAGCACAGGCAAAACAGCTGAGTCCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
3UTR CAA 72 bp GTCTCCTCTTCCTGTCCCCCTGCACACCACACCCCATaGGTGTTGCTCTGGCCTGCTCCTGTCCACCTGCCT +
Preference number: 4 (lower is better)
Translates to: VSSSCPPAHHTP*VLLWPAPVHLP
Trigger: AGGCAGGTGGACAGGAGCAGGCCAGAGCAACACCAATGGGGTGTGGTGTGCAGGGGGACAGGAAGAGGAGAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100332.4
CDS-3UTR TCA 90 bp AGAAAGGGCTTCTGGGTGGAGAGGTCTCTGCCGCACTCCACGACCAGCTCCCTTGGTGGCGGGGAGGAGTaGAGGTCCCAAGGACTCATT +
Preference number: 4 (lower is better)
Translates to: RKGFWVERSLPHSTTSSLGGGEE*RSQGLI
Trigger: AATGAGTCCTTGGGACCTTCACTCCTCCCCGCCACC...AAGGGAGCTGGTCGTGGAGTGCGGCAGAGACCTCTCCACCCAGAAGCCCTTTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR GCA 90 bp CACGGGGGACTCAGCTGTTTTGCCTGTGCTGGCTGGGATGGTCCCTGTGGCTGCCCACTGGAGAGGGTTTaGTGGGGCTCACTTTCTCTG +
Preference number: 4 (lower is better)
Translates to: HGGLSCFACAGWDGPCGCPLERV*WGSLSL
Trigger: CAGAGAAAGTGAGCCCCAGCAAACCCTCTCCAGTGG...GCAGCCACAGGGACCATCCCAGCCAGCACAGGCAAAACAGCTGAGTCCCCCGTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR CCA 90 bp GGGACTCAGCTGTTTTGCCTGTGCTGGCTGGGATGGTCCCTGTGGCTGCCCACGAAATGGTGTCCTTCTTaGTCCTACCACGGTGGCGGG +
Preference number: 4 (lower is better)
Translates to: GTQLFCLCWLGWSLWLPTKWCPS*SYHGGG
Trigger: CCCGCCACCGTGGTAGGACCAAGAAGGACACCATTT...CGTGGGCAGCCACAGGGACCATCCCAGCCAGCACAGGCAAAACAGCTGAGTCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR CCA 90 bp GGGGACTCAGCTGTTTTGCCTGTGCTGGCTGGGATGGTCCCTGTGGCTGCCCACATCTCCTGTGTACCCTaGGCTTCATCACTGCGGCCT +
Preference number: 4 (lower is better)
Translates to: GDSAVLPVLAGMVPVAAHISCVP*ASSLRP
Trigger: AGGCCGCAGTGATGAAGCCCAGGGTACACAGGAGAT...GTGGGCAGCCACAGGGACCATCCCAGCCAGCACAGGCAAAACAGCTGAGTCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR CCA 90 bp GTCCACCTGCCTTCTGCTGTCCCCCACTCTCTGACTCTTTTGTGCTGTGTGCCTGGGCTCTGGGCCCCCTaGGCAGCTGGTGGAACTAAG +
Preference number: 4 (lower is better)
Translates to: VHLPSAVPHSLTLLCCVPGLWAP*AAGGTK
Trigger: CTTAGTTCCACCAGCTGCCCAGGGGGCCCAGAGCCC...AGGCACACAGCACAAAAGAGTCAGAGAGTGGGGGACAGCAGAAGGCAGGTGGAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000100332.4
CDS-3UTR TCA 90 bp CCCCTGCACACCACACCCCATTGGTGTTGCTCTGGCCTGCTCCTGTCCACCTGCGATACTGAACATCGCTaGCGAACTTCTGCCTGTCCC +
Preference number: 4 (lower is better)
Translates to: PLHTTPHWCCSGLLLSTCDTEHR*RTSACP
Trigger: GGGACAGGCAGAAGTTCGTCAGCGATGTTCAGTATC...GCAGGTGGACAGGAGCAGGCCAGAGCAACACCAATGGGGTGTGGTGTGCAGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100332.4
CDS-3UTR TCA 90 bp GGGGACTCAGCTGTTTTGCCTGTGCTGGCTGGGATGGTCCCTGTGGCTGCCCACAGGTGGATTCATGGATaGTCTTGGAGCTGTGGGCCT +
Preference number: 4 (lower is better)
Translates to: GDSAVLPVLAGMVPVAAHRWIHG*SWSCGP
Trigger: AGGCCCACAGCTCCAAGATCATCCATGAATCCACCT...GTGGGCAGCCACAGGGACCATCCCAGCCAGCACAGGCAAAACAGCTGAGTCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR TCA 90 bp CACGGGGGACTCAGCTGTTTTGCCTGTGCTGGCTGGGATGGTCCCTGTGGCTGCGAACCCCCGGCTATCTaGCAGATTCGACACAAGTCT +
Preference number: 4 (lower is better)
Translates to: HGGLSCFACAGWDGPCGCEPPAI*QIRHKS
Trigger: AGACTTGTGTCGAATCTGTCAGATAGCCGGGGGTTC...GCAGCCACAGGGACCATCCCAGCCAGCACAGGCAAAACAGCTGAGTCCCCCGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR CCA 90 bp AGAAAGGGCTTCTGGGTGGAGAGGTCTCTGCCGCACTCCACGACCAGCTCCCTTCTCCGCAGATGCTCTTaGGCTGTGCATCTCTGGGCT +
Preference number: 4 (lower is better)
Translates to: RKGFWVERSLPHSTTSSLLRRCS*AVHLWA
Trigger: AGCCCAGAGATGCACAGCCCAAGAGCATCTGCGGAG...AAGGGAGCTGGTCGTGGAGTGCGGCAGAGACCTCTCCACCCAGAAGCCCTTTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR CCA 90 bp CCCCCTGCACACCACACCCCATTGGTGTTGCTCTGGCCTGCTCCTGTCCACCTGGGAGGCAGCAGTAATTaGTATTGGGCTGCTGGGTTG +
Preference number: 4 (lower is better)
Translates to: PPAHHTPLVLLWPAPVHLGGSSN*YWAAGL
Trigger: CAACCCAGCAGCCCAATACCAATTACTGCTGCCTCC...CAGGTGGACAGGAGCAGGCCAGAGCAACACCAATGGGGTGTGGTGTGCAGGGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100332.4
CDS-3UTR CCA 90 bp CTGCACACCACACCCCATTGGTGTTGCTCTGGCCTGCTCCTGTCCACCTGCCTTGTAGCAGAGAGATGCTaGAGACCCCAGCAAGGGGCT +
Preference number: 4 (lower is better)
Translates to: LHTTPHWCCSGLLLSTCLVAERC*RPQQGA
Trigger: AGCCCCTTGCTGGGGTCTCCAGCATCTCTCTGCTAC...AAGGCAGGTGGACAGGAGCAGGCCAGAGCAACACCAATGGGGTGTGGTGTGCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000100332.4
CDS-3UTR TCA 90 bp GGGACACAGAAAGGGCTTCTGGGTGGAGAGGTCTCTGCCGCACTCCACGACCAGAGGTGGATTCATGGATaGTCTTGGAGCTGTGGGCCT +
Preference number: 4 (lower is better)
Translates to: GTQKGLLGGEVSAALHDQRWIHG*SWSCGP
Trigger: AGGCCCACAGCTCCAAGATCATCCATGAATCCACCT...CTGGTCGTGGAGTGCGGCAGAGACCTCTCCACCCAGAAGCCCTTTCTGTGTCCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR TCA 90 bp GGGGACTCAGCTGTTTTGCCTGTGCTGGCTGGGATGGTCCCTGTGGCTGCCCACATGGATTTCTATTTCTaGTGGGTGAGAGTGGCCGGC +
Preference number: 4 (lower is better)
Translates to: GDSAVLPVLAGMVPVAAHMDFYF*WVRVAG
Trigger: GCCGGCCACTCTCACCCATCAGAAATAGAAATCCAT...GTGGGCAGCCACAGGGACCATCCCAGCCAGCACAGGCAAAACAGCTGAGTCCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR GCA 90 bp GGGGACTCAGCTGTTTTGCCTGTGCTGGCTGGGATGGTCCCTGTGGCTGCCCACAGAAGGCTGCTTTGTTaGTGGCTCTGTGGTACTGGT +
Preference number: 4 (lower is better)
Translates to: GDSAVLPVLAGMVPVAAHRRLLC*WLCGTG
Trigger: ACCAGTACCACAGAGCCAGCAACAAAGCAGCCTTCT...GTGGGCAGCCACAGGGACCATCCCAGCCAGCACAGGCAAAACAGCTGAGTCCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR GCA 90 bp AGAAAGGGCTTCTGGGTGGAGAGGTCTCTGCCGCACTCCACGACCAGCTCCCTTTGCCCAGGAGAAGGCTaGTTTGTTGCTGGCTCTGTG +
Preference number: 4 (lower is better)
Translates to: RKGFWVERSLPHSTTSSLCPGEG*FVAGSV
Trigger: CACAGAGCCAGCAACAAAGCAGCCTTCTCCTGGGCA...AAGGGAGCTGGTCGTGGAGTGCGGCAGAGACCTCTCCACCCAGAAGCCCTTTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR GCA 90 bp GGGACACAGAAAGGGCTTCTGGGTGGAGAGGTCTCTGCCGCACTCCACGACCAGCTCTGCTCATATAGGTaGAGCAGCAGCACCAGGTAC +
Preference number: 4 (lower is better)
Translates to: GTQKGLLGGEVSAALHDQLCSYR*SSSTRY
Trigger: GTACCTGGTGCTGCTGCTGCACCTATATGAGCAGAG...CTGGTCGTGGAGTGCGGCAGAGACCTCTCCACCCAGAAGCCCTTTCTGTGTCCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR GCA 90 bp TGTCCACCTGCCTTCTGCTGTCCCCCACTCTCTGACTCTTTTGTGCTGTGTGCCACAGGGGCTGCTCGCTaGTGTCACCTGGAGAGGGTT +
Preference number: 4 (lower is better)
Translates to: CPPAFCCPPLSDSFVLCATGAAR*CHLERV
Trigger: AACCCTCTCCAGGTGACAGCAGCGAGCAGCCCCTGT...GGCACACAGCACAAAAGAGTCAGAGAGTGGGGGACAGCAGAAGGCAGGTGGACA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000100332.4
CDS-3UTR CCA 90 bp CACGGGGGACTCAGCTGTTTTGCCTGTGCTGGCTGGGATGGTCCCTGTGGCTGCTGCTTGGTCAATGGCTaGAAGTCTGGGCTCACACTT +
Preference number: 4 (lower is better)
Translates to: HGGLSCFACAGWDGPCGCCLVNG*KSGLTL
Trigger: AAGTGTGAGCCCAGACTTCCAGCCATTGACCAAGCA...GCAGCCACAGGGACCATCCCAGCCAGCACAGGCAAAACAGCTGAGTCCCCCGTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR CCA 90 bp TGCTCAAGCCAGACCCCAAGAAGGAGTGGCACGGGTGAAAATGGTAACTGCGAACAGGAGGGGGTTGGCTaGGGAACCCCCGGCTATCTG +
Preference number: 4 (lower is better)
Translates to: CSSQTPRRSGTGENGNCEQEGVG*GTPGYL
Trigger: CAGATAGCCGGGGGTTCCCCAGCCAACCCCCTCCTG...TTCGCAGTTACCATTTTCACCCGTGCCACTCCTTCTTGGGGTCTGGCTTGAGCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR GCA 90 bp CACGGGGGACTCAGCTGTTTTGCCTGTGCTGGCTGGGATGGTCCCTGTGGCTGCCACAGGTCTTTACAGTaGCTAGATCTGCTCCTGATG +
Preference number: 4 (lower is better)
Translates to: HGGLSCFACAGWDGPCGCHRSLQ*LDLLLM
Trigger: CATCAGGAGCAGATCTAGGCACTGTAAAGACCTGTG...GCAGCCACAGGGACCATCCCAGCCAGCACAGGCAAAACAGCTGAGTCCCCCGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR CCA 90 bp GGGACTCAGCTGTTTTGCCTGTGCTGGCTGGGATGGTCCCTGTGGCTGCCCACGGAACCATTCATTGGCTaGAATGTCTGTGAGAGGGCA +
Preference number: 4 (lower is better)
Translates to: GTQLFCLCWLGWSLWLPTEPFIG*NVCERA
Trigger: TGCCCTCTCACAGACATTCCAGCCAATGAATGGTTC...CGTGGGCAGCCACAGGGACCATCCCAGCCAGCACAGGCAAAACAGCTGAGTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR CCA 90 bp GGGACACAGAAAGGGCTTCTGGGTGGAGAGGTCTCTGCCGCACTCCACGACCAGGGTAACCTGGTATCTTaGAGCATCCTTTGCCCAGGA +
Preference number: 4 (lower is better)
Translates to: GTQKGLLGGEVSAALHDQGNLVS*SILCPG
Trigger: TCCTGGGCAAAGGATGCTCCAAGATACCAGGTTACC...CTGGTCGTGGAGTGCGGCAGAGACCTCTCCACCCAGAAGCCCTTTCTGTGTCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR CCA 90 bp AGCCAGACCCCAAGAAGGAGTGGCACGGGTGAAAATGGTAACTGCGAACACATTCAGGAGGGGGTTGGCTaGGGAACCCCCGGCTATCTG +
Preference number: 4 (lower is better)
Translates to: SQTPRRSGTGENGNCEHIQEGVG*GTPGYL
Trigger: CAGATAGCCGGGGGTTCCCCAGCCAACCCCCTCCTG...AATGTGTTCGCAGTTACCATTTTCACCCGTGCCACTCCTTCTTGGGGTCTGGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR CCA 90 bp AGGGAAGTGTCAGTGCGCTGTCTCCTCTTCCTGTCCCCCTGCACACCACACCCCTTGGTATTGGGCTGCTaGGTTGGGGAGAAAGCAAAG +
Preference number: 4 (lower is better)
Translates to: REVSVRCLLFLSPCTPHPLVLGC*VGEKAK
Trigger: CTTTGCTTTCTCCCCAACCCAGCAGCCCAATACCAA...GGGGTGTGGTGTGCAGGGGGACAGGAAGAGGAGACAGCGCACTGACACTTCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000100332.4
CDS-3UTR TCA 90 bp CACGGGGGACTCAGCTGTTTTGCCTGTGCTGGCTGGGATGGTCCCTGTGGCTGCACAAGCCTGATATTCTaGGTCCACCTTATGCTGCAT +
Preference number: 4 (lower is better)
Translates to: HGGLSCFACAGWDGPCGCTSLIF*VHLMLH
Trigger: ATGCAGCATAAGGTGGACTCAGAATATCAGGCTTGT...GCAGCCACAGGGACCATCCCAGCCAGCACAGGCAAAACAGCTGAGTCCCCCGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR TCA 90 bp CACGGGGGACTCAGCTGTTTTGCCTGTGCTGGCTGGGATGGTCCCTGTGGCTGCTTGTGGGTAATTTCTTaGCAACCTCTCTCTGGAAGC +
Preference number: 4 (lower is better)
Translates to: HGGLSCFACAGWDGPCGCLWVIS*QPLSGS
Trigger: GCTTCCAGAGAGAGGTTGTCAAGAAATTACCCACAA...GCAGCCACAGGGACCATCCCAGCCAGCACAGGCAAAACAGCTGAGTCCCCCGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR GCA 90 bp CACGGGGGACTCAGCTGTTTTGCCTGTGCTGGCTGGGATGGTCCCTGTGGCTGCTCTGAGTCCACCTTATaGTGCATATCCCGTAGATAC +
Preference number: 4 (lower is better)
Translates to: HGGLSCFACAGWDGPCGCSESTL*CISRRY
Trigger: GTATCTACGGGATATGCAGCATAAGGTGGACTCAGA...GCAGCCACAGGGACCATCCCAGCCAGCACAGGCAAAACAGCTGAGTCCCCCGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR GCA 90 bp GGGACTCAGCTGTTTTGCCTGTGCTGGCTGGGATGGTCCCTGTGGCTGCCCACGTCTGAGTCCACCTTATaGTGCATATCCCGTAGATAC +
Preference number: 4 (lower is better)
Translates to: GTQLFCLCWLGWSLWLPTSESTL*CISRRY
Trigger: GTATCTACGGGATATGCAGCATAAGGTGGACTCAGA...CGTGGGCAGCCACAGGGACCATCCCAGCCAGCACAGGCAAAACAGCTGAGTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR GCA 90 bp CACGGGGGACTCAGCTGTTTTGCCTGTGCTGGCTGGGATGGTCCCTGTGGCTGCATAATCTTGCTTCACTaGGAGAATCCTCCTCACAGG +
Preference number: 4 (lower is better)
Translates to: HGGLSCFACAGWDGPCGCIILLH*ENPPHR
Trigger: CCTGTGAGGAGGATTCTCGCAGTGAAGCAAGATTAT...GCAGCCACAGGGACCATCCCAGCCAGCACAGGCAAAACAGCTGAGTCCCCCGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR GCA 90 bp GGGGACTCAGCTGTTTTGCCTGTGCTGGCTGGGATGGTCCCTGTGGCTGCCCACGTGCCTTTGTGTTTCTaGTTGACAGATGCTTGGTCA +
Preference number: 4 (lower is better)
Translates to: GDSAVLPVLAGMVPVAAHVPLCF*LTDAWS
Trigger: TGACCAAGCATCTGTCAAGCAGAAACACAAAGGCAC...GTGGGCAGCCACAGGGACCATCCCAGCCAGCACAGGCAAAACAGCTGAGTCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR GCA 90 bp AGAAAGGGCTTCTGGGTGGAGAGGTCTCTGCCGCACTCCACGACCAGCTCCCTTTCGACCAGTAGGCCTTaGTTACACATCTCACAGGTC +
Preference number: 4 (lower is better)
Translates to: RKGFWVERSLPHSTTSSLSTSRP*LHISQV
Trigger: GACCTGTGAGATGTGTAAGCAAGGCCTACTGGTCGA...AAGGGAGCTGGTCGTGGAGTGCGGCAGAGACCTCTCCACCCAGAAGCCCTTTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR GCA 90 bp GTCCACCTGCCTTCTGCTGTCCCCCACTCTCTGACTCTTTTGTGCTGTGTGCCTCACCTGGAGAGGGTTTaGTGGGGCTCACTTTCTCTG +
Preference number: 4 (lower is better)
Translates to: VHLPSAVPHSLTLLCCVPHLERV*WGSLSL
Trigger: CAGAGAAAGTGAGCCCCAGCAAACCCTCTCCAGGTG...AGGCACACAGCACAAAAGAGTCAGAGAGTGGGGGACAGCAGAAGGCAGGTGGAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000100332.4
CDS-3UTR CCA 90 bp AGAAAGGGCTTCTGGGTGGAGAGGTCTCTGCCGCACTCCACGACCAGCTCCCTTCTTTGTCGACAGCTGTaGTTTCTGCCTGCTTCTCTC +
Preference number: 4 (lower is better)
Translates to: RKGFWVERSLPHSTTSSLLCRQL*FLPASL
Trigger: GAGAGAAGCAGGCAGAAACCACAGCTGTCGACAAAG...AAGGGAGCTGGTCGTGGAGTGCGGCAGAGACCTCTCCACCCAGAAGCCCTTTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR CCA 90 bp GGGGACTCAGCTGTTTTGCCTGTGCTGGCTGGGATGGTCCCTGTGGCTGCCCACACTCACTGGGTAACCTaGTATCTTGGAGCATCCTTT +
Preference number: 4 (lower is better)
Translates to: GDSAVLPVLAGMVPVAAHTHWVT*YLGASF
Trigger: AAAGGATGCTCCAAGATACCAGGTTACCCAGTGAGT...GTGGGCAGCCACAGGGACCATCCCAGCCAGCACAGGCAAAACAGCTGAGTCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR CCA 90 bp GGGACTCAGCTGTTTTGCCTGTGCTGGCTGGGATGGTCCCTGTGGCTGCCCACGTCGTCAGCACTGACCTaGATAACACCATCAGATTTC +
Preference number: 4 (lower is better)
Translates to: GTQLFCLCWLGWSLWLPTSSALT*ITPSDF
Trigger: GAAATCTGATGGTGTTATCCAGGTCAGTGCTGACGA...CGTGGGCAGCCACAGGGACCATCCCAGCCAGCACAGGCAAAACAGCTGAGTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR TCA 90 bp GGGACTCAGCTGTTTTGCCTGTGCTGGCTGGGATGGTCCCTGTGGCTGCCCACGTCCACATTTCTATTTTaGGCAGTTGATGTCCCGAGA +
Preference number: 4 (lower is better)
Translates to: GTQLFCLCWLGWSLWLPTSTFLF*AVDVPR
Trigger: TCTCGGGACATCAACTGCTCAAAATAGAAATGTGGA...CGTGGGCAGCCACAGGGACCATCCCAGCCAGCACAGGCAAAACAGCTGAGTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR TCA 90 bp GGGACACAGAAAGGGCTTCTGGGTGGAGAGGTCTCTGCCGCACTCCACGACCAGTTTCTTGCAATTTCCTaGGCTTCTCAGGATCTGCCT +
Preference number: 4 (lower is better)
Translates to: GTQKGLLGGEVSAALHDQFLAIS*ASQDLP
Trigger: AGGCAGATCCTGAGAAGCTCAGGAAATTGCAAGAAA...CTGGTCGTGGAGTGCGGCAGAGACCTCTCCACCCAGAAGCCCTTTCTGTGTCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR GCA 90 bp TCCCCCTGCACACCACACCCCATTGGTGTTGCTCTGGCCTGCTCCTGTCCACCTTTTCTGCTTGACAGATaGTTGGTCAATGGCTGGAAG +
Preference number: 4 (lower is better)
Translates to: SPCTPHPIGVALACSCPPFLLDR*LVNGWK
Trigger: CTTCCAGCCATTGACCAAGCATCTGTCAAGCAGAAA...AGGTGGACAGGAGCAGGCCAGAGCAACACCAATGGGGTGTGGTGTGCAGGGGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000100332.4
CDS-3UTR GCA 90 bp GGGGACTCAGCTGTTTTGCCTGTGCTGGCTGGGATGGTCCCTGTGGCTGCCCACTCCAGGAGACTTTCTTaGAATTTCCTGAGCTTCTCA +
Preference number: 4 (lower is better)
Translates to: GDSAVLPVLAGMVPVAAHSRRLS*NFLSFS
Trigger: TGAGAAGCTCAGGAAATTGCAAGAAAGTCTCCTGGA...GTGGGCAGCCACAGGGACCATCCCAGCCAGCACAGGCAAAACAGCTGAGTCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR CCA 90 bp GACGCCCATATCAAGGGAAGTGTCAGTGCGCTGTCTCCTCTTCCTGTCCCCCTGTGCTTGGTCAATGGCTaGAAGTCTGGGCTCACACTT +
Preference number: 4 (lower is better)
Translates to: DAHIKGSVSALSPLPVPLCLVNG*KSGLTL
Trigger: AAGTGTGAGCCCAGACTTCCAGCCATTGACCAAGCA...CAGGGGGACAGGAAGAGGAGACAGCGCACTGACACTTCCCTTGATATGGGCGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100332.4
CDS-3UTR CCA 90 bp GGGACACAGAAAGGGCTTCTGGGTGGAGAGGTCTCTGCCGCACTCCACGACCAGGTCATGGAACCTAAATaGTGTCCTTCTTGGTCCTAC +
Preference number: 4 (lower is better)
Translates to: GTQKGLLGGEVSAALHDQVMEPK*CPSWSY
Trigger: GTAGGACCAAGAAGGACACCATTTAGGTTCCATGAC...CTGGTCGTGGAGTGCGGCAGAGACCTCTCCACCCAGAAGCCCTTTCTGTGTCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR CCA 90 bp CATATCAAGGGAAGTGTCAGTGCGCTGTCTCCTCTTCCTGTCCCCCTGCACACCATTGGGCTGCTGGGTTaGGGAGAAAGCAAAGACGGA +
Preference number: 4 (lower is better)
Translates to: HIKGSVSALSPLPVPLHTIGLLG*GESKDG
Trigger: TCCGTCTTTGCTTTCTCCCCAACCCAGCAGCCCAAT...GGTGTGCAGGGGGACAGGAAGAGGAGACAGCGCACTGACACTTCCCTTGATATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100332.4
CDS-3UTR CCA 90 bp CGCCCATATCAAGGGAAGTGTCAGTGCGCTGTCTCCTCTTCCTGTCCCCCTGCAAGCAGTAATTGGTATTaGGCTGCTGGGTTGGGGAGA +
Preference number: 4 (lower is better)
Translates to: RPYQGKCQCAVSSSCPPASSNWY*AAGLGR
Trigger: TCTCCCCAACCCAGCAGCCCAATACCAATTACTGCT...TGCAGGGGGACAGGAAGAGGAGACAGCGCACTGACACTTCCCTTGATATGGGCG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100332.4
CDS-3UTR CCA 90 bp CATATCAAGGGAAGTGTCAGTGCGCTGTCTCCTCTTCCTGTCCCCCTGCACACCTTTTACTGGGCCTTCTaGGGCCTGGTAGACACAGCA +
Preference number: 4 (lower is better)
Translates to: HIKGSVSALSPLPVPLHTFYWAF*GLVDTA
Trigger: TGCTGTGTCTACCAGGCCCCAGAAGGCCCAGTAAAA...GGTGTGCAGGGGGACAGGAAGAGGAGACAGCGCACTGACACTTCCCTTGATATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100332.4
CDS-3UTR TCA 90 bp TGCTCAAGCCAGACCCCAAGAAGGAGTGGCACGGGTGAAAATGGTAACTGCGAAGGCTCGTTCTGGGGATaGGCACTCAGGTCTCCTTTT +
Preference number: 4 (lower is better)
Translates to: CSSQTPRRSGTGENGNCEGSFWG*ALRSPF
Trigger: AAAAGGAGACCTGAGTGCTCATCCCCAGAACGAGCC...TTCGCAGTTACCATTTTCACCCGTGCCACTCCTTCTTGGGGTCTGGCTTGAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR TCA 90 bp AGAAAGGGCTTCTGGGTGGAGAGGTCTCTGCCGCACTCCACGACCAGCTCCCTTGACTCATTCAGCATTTaGGAACCATTCATTGGCTGG +
Preference number: 4 (lower is better)
Translates to: RKGFWVERSLPHSTTSSLDSFSI*EPFIGW
Trigger: CCAGCCAATGAATGGTTCTCAAATGCTGAATGAGTC...AAGGGAGCTGGTCGTGGAGTGCGGCAGAGACCTCTCCACCCAGAAGCCCTTTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR GCA 90 bp TGCTCAAGCCAGACCCCAAGAAGGAGTGGCACGGGTGAAAATGGTAACTGCGAAGCTGTGGTTTCTGCCTaGTTCTCTCCGCAGATGCTC +
Preference number: 4 (lower is better)
Translates to: CSSQTPRRSGTGENGNCEAVVSA*FSPQML
Trigger: GAGCATCTGCGGAGAGAAGCAGGCAGAAACCACAGC...TTCGCAGTTACCATTTTCACCCGTGCCACTCCTTCTTGGGGTCTGGCTTGAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR GCA 90 bp TGCTCAAGCCAGACCCCAAGAAGGAGTGGCACGGGTGAAAATGGTAACTGCGAATGCCCAGGAGAAGGCTaGTTTGTTGCTGGCTCTGTG +
Preference number: 4 (lower is better)
Translates to: CSSQTPRRSGTGENGNCECPGEG*FVAGSV
Trigger: CACAGAGCCAGCAACAAAGCAGCCTTCTCCTGGGCA...TTCGCAGTTACCATTTTCACCCGTGCCACTCCTTCTTGGGGTCTGGCTTGAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR CCA 90 bp TCAAGCCAGACCCCAAGAAGGAGTGGCACGGGTGAAAATGGTAACTGCGAACACAAATGGTGTCCTTCTTaGTCCTACCACGGTGGCGGG +
Preference number: 4 (lower is better)
Translates to: SSQTPRRSGTGENGNCEHKWCPS*SYHGGG
Trigger: CCCGCCACCGTGGTAGGACCAAGAAGGACACCATTT...GTGTTCGCAGTTACCATTTTCACCCGTGCCACTCCTTCTTGGGGTCTGGCTTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR CCA 90 bp TGCTCAAGCCAGACCCCAAGAAGGAGTGGCACGGGTGAAAATGGTAACTGCGAAATCTCCTGTGTACCCTaGGCTTCATCACTGCGGCCT +
Preference number: 4 (lower is better)
Translates to: CSSQTPRRSGTGENGNCEISCVP*ASSLRP
Trigger: AGGCCGCAGTGATGAAGCCCAGGGTACACAGGAGAT...TTCGCAGTTACCATTTTCACCCGTGCCACTCCTTCTTGGGGTCTGGCTTGAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR TCA 90 bp TCAAGCCAGACCCCAAGAAGGAGTGGCACGGGTGAAAATGGTAACTGCGAACACGATACTGAACATCGCTaGCGAACTTCTGCCTGTCCC +
Preference number: 4 (lower is better)
Translates to: SSQTPRRSGTGENGNCEHDTEHR*RTSACP
Trigger: GGGACAGGCAGAAGTTCGTCAGCGATGTTCAGTATC...GTGTTCGCAGTTACCATTTTCACCCGTGCCACTCCTTCTTGGGGTCTGGCTTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR TCA 90 bp TGCTCAAGCCAGACCCCAAGAAGGAGTGGCACGGGTGAAAATGGTAACTGCGAAGATACTGAACATCGCTaGCGAACTTCTGCCTGTCCC +
Preference number: 4 (lower is better)
Translates to: CSSQTPRRSGTGENGNCEDTEHR*RTSACP
Trigger: GGGACAGGCAGAAGTTCGTCAGCGATGTTCAGTATC...TTCGCAGTTACCATTTTCACCCGTGCCACTCCTTCTTGGGGTCTGGCTTGAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR TCA 90 bp TCAAGCCAGACCCCAAGAAGGAGTGGCACGGGTGAAAATGGTAACTGCGAACACCACCAGGTACAAGCCTaGGTTCATCAGCTCACTCTG +
Preference number: 4 (lower is better)
Translates to: SSQTPRRSGTGENGNCEHHQVQA*VHQLTL
Trigger: CAGAGTGAGCTGATGAACTCAGGCTTGTACCTGGTG...GTGTTCGCAGTTACCATTTTCACCCGTGCCACTCCTTCTTGGGGTCTGGCTTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR GCA 90 bp GTCCACCTGCCTTCTGCTGTCCCCCACTCTCTGACTCTTTTGTGCTGTGTGCCTTCTCTCACCCACAGCTaGTCCTGCTTCTTCTCATTT +
Preference number: 4 (lower is better)
Translates to: VHLPSAVPHSLTLLCCVPSLTHS*SCFFSF
Trigger: AAATGAGAAGAAGCAGGAGCAGCTGTGGGTGAGAGA...AGGCACACAGCACAAAAGAGTCAGAGAGTGGGGGACAGCAGAAGGCAGGTGGAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100332.4
CDS-3UTR GCA 90 bp CGCCCATATCAAGGGAAGTGTCAGTGCGCTGTCTCCTCTTCCTGTCCCCCTGCAGTGCCTTTGTGTTTCTaGTTGACAGATGCTTGGTCA +
Preference number: 4 (lower is better)
Translates to: RPYQGKCQCAVSSSCPPAVPLCF*LTDAWS
Trigger: TGACCAAGCATCTGTCAAGCAGAAACACAAAGGCAC...TGCAGGGGGACAGGAAGAGGAGACAGCGCACTGACACTTCCCTTGATATGGGCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100332.4
CDS-3UTR CCA 90 bp TCAAGCCAGACCCCAAGAAGGAGTGGCACGGGTGAAAATGGTAACTGCGAACACGGTACTGGTTTTTCTTaGAGATCCAGGGCTGGGCTC +
Preference number: 4 (lower is better)
Translates to: SSQTPRRSGTGENGNCEHGTGFS*RSRAGL
Trigger: GAGCCCAGCCCTGGATCTCCAAGAAAAACCAGTACC...GTGTTCGCAGTTACCATTTTCACCCGTGCCACTCCTTCTTGGGGTCTGGCTTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR TCA 90 bp TGTCCACCTGCCTTCTGCTGTCCCCCACTCTCTGACTCTTTTGTGCTGTGTGCCACAAGCCTGATATTCTaGGTCCACCTTATGCTGCAT +
Preference number: 4 (lower is better)
Translates to: CPPAFCCPPLSDSFVLCATSLIF*VHLMLH
Trigger: ATGCAGCATAAGGTGGACTCAGAATATCAGGCTTGT...GGCACACAGCACAAAAGAGTCAGAGAGTGGGGGACAGCAGAAGGCAGGTGGACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100332.4
CDS-3UTR TCA 90 bp AGCCAGACCCCAAGAAGGAGTGGCACGGGTGAAAATGGTAACTGCGAACACATTGAACCCCCGGCTATCTaGCAGATTCGACACAAGTCT +
Preference number: 4 (lower is better)
Translates to: SQTPRRSGTGENGNCEHIEPPAI*QIRHKS
Trigger: AGACTTGTGTCGAATCTGTCAGATAGCCGGGGGTTC...AATGTGTTCGCAGTTACCATTTTCACCCGTGCCACTCCTTCTTGGGGTCTGGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR GCA 90 bp CCTGCCTTCTGCTGTCCCCCACTCTCTGACTCTTTTGTGCTGTGTGCCTCGCTATCTGAGTCCACCTTATaGTGCATATCCCGTAGATAC +
Preference number: 4 (lower is better)
Translates to: PAFCCPPLSDSFVLCASLSESTL*CISRRY
Trigger: GTATCTACGGGATATGCAGCATAAGGTGGACTCAGA...TAGCGAGGCACACAGCACAAAAGAGTCAGAGAGTGGGGGACAGCAGAAGGCAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100332.4
CDS-3UTR GCA 90 bp CATATCAAGGGAAGTGTCAGTGCGCTGTCTCCTCTTCCTGTCCCCCTGCACACCATAATCTTGCTTCACTaGGAGAATCCTCCTCACAGG +
Preference number: 4 (lower is better)
Translates to: HIKGSVSALSPLPVPLHTIILLH*ENPPHR
Trigger: CCTGTGAGGAGGATTCTCGCAGTGAAGCAAGATTAT...GGTGTGCAGGGGGACAGGAAGAGGAGACAGCGCACTGACACTTCCCTTGATATG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100332.4
CDS-3UTR GCA 90 bp TGCTCAAGCCAGACCCCAAGAAGGAGTGGCACGGGTGAAAATGGTAACTGCGAAAGAAGGCTGCTTTGTTaGTGGCTCTGTGGTACTGGT +
Preference number: 4 (lower is better)
Translates to: CSSQTPRRSGTGENGNCERRLLC*WLCGTG
Trigger: ACCAGTACCACAGAGCCAGCAACAAAGCAGCCTTCT...TTCGCAGTTACCATTTTCACCCGTGCCACTCCTTCTTGGGGTCTGGCTTGAGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR GCA 90 bp TCAAGCCAGACCCCAAGAAGGAGTGGCACGGGTGAAAATGGTAACTGCGAACACTCGACCAGTAGGCCTTaGTTACACATCTCACAGGTC +
Preference number: 4 (lower is better)
Translates to: SSQTPRRSGTGENGNCEHSTSRP*LHISQV
Trigger: GACCTGTGAGATGTGTAAGCAAGGCCTACTGGTCGA...GTGTTCGCAGTTACCATTTTCACCCGTGCCACTCCTTCTTGGGGTCTGGCTTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR GCA 90 bp AGCCAGACCCCAAGAAGGAGTGGCACGGGTGAAAATGGTAACTGCGAACACATTCTCTGCTCATATAGGTaGAGCAGCAGCACCAGGTAC +
Preference number: 4 (lower is better)
Translates to: SQTPRRSGTGENGNCEHILCSYR*SSSTRY
Trigger: GTACCTGGTGCTGCTGCTGCACCTATATGAGCAGAG...AATGTGTTCGCAGTTACCATTTTCACCCGTGCCACTCCTTCTTGGGGTCTGGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR CCA 90 bp AGCCAGACCCCAAGAAGGAGTGGCACGGGTGAAAATGGTAACTGCGAACACATTGGTACTGGTTTTTCTTaGAGATCCAGGGCTGGGCTC +
Preference number: 4 (lower is better)
Translates to: SQTPRRSGTGENGNCEHIGTGFS*RSRAGL
Trigger: GAGCCCAGCCCTGGATCTCCAAGAAAAACCAGTACC...AATGTGTTCGCAGTTACCATTTTCACCCGTGCCACTCCTTCTTGGGGTCTGGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR CCA 90 bp TGCTCAAGCCAGACCCCAAGAAGGAGTGGCACGGGTGAAAATGGTAACTGCGAAATGATCTTGGAGCTGTaGGCCTCCCAGAAAGTAAGC +
Preference number: 4 (lower is better)
Translates to: CSSQTPRRSGTGENGNCEMILEL*ASQKVS
Trigger: GCTTACTTTCTGGGAGGCCCACAGCTCCAAGATCAT...TTCGCAGTTACCATTTTCACCCGTGCCACTCCTTCTTGGGGTCTGGCTTGAGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR TCA 90 bp TCAAGCCAGACCCCAAGAAGGAGTGGCACGGGTGAAAATGGTAACTGCGAACACAGAATTCGGTCATGTTaGAGTCATCCAGGTCGACCA +
Preference number: 4 (lower is better)
Translates to: SSQTPRRSGTGENGNCEHRIRSC*SHPGRP
Trigger: TGGTCGACCTGGATGACTTCAACATGACCGAATTCT...GTGTTCGCAGTTACCATTTTCACCCGTGCCACTCCTTCTTGGGGTCTGGCTTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR GCA 90 bp TCAAGCCAGACCCCAAGAAGGAGTGGCACGGGTGAAAATGGTAACTGCGAACACCACAGGTCTTTACAGTaGCTAGATCTGCTCCTGATG +
Preference number: 4 (lower is better)
Translates to: SSQTPRRSGTGENGNCEHHRSLQ*LDLLLM
Trigger: CATCAGGAGCAGATCTAGGCACTGTAAAGACCTGTG...GTGTTCGCAGTTACCATTTTCACCCGTGCCACTCCTTCTTGGGGTCTGGCTTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR CCA 90 bp TCAAGCCAGACCCCAAGAAGGAGTGGCACGGGTGAAAATGGTAACTGCGAACACGAACCATTCATTGGCTaGAATGTCTGTGAGAGGGCA +
Preference number: 4 (lower is better)
Translates to: SSQTPRRSGTGENGNCEHEPFIG*NVCERA
Trigger: TGCCCTCTCACAGACATTCCAGCCAATGAATGGTTC...GTGTTCGCAGTTACCATTTTCACCCGTGCCACTCCTTCTTGGGGTCTGGCTTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR CCA 90 bp TGCTCAAGCCAGACCCCAAGAAGGAGTGGCACGGGTGAAAATGGTAACTGCGAACTGGCTCTGTGGTACTaGTTTTTCTTGGAGATCCAG +
Preference number: 4 (lower is better)
Translates to: CSSQTPRRSGTGENGNCELALWY*FFLEIQ
Trigger: CTGGATCTCCAAGAAAAACCAGTACCACAGAGCCAG...TTCGCAGTTACCATTTTCACCCGTGCCACTCCTTCTTGGGGTCTGGCTTGAGCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR CCA 90 bp AGCCAGACCCCAAGAAGGAGTGGCACGGGTGAAAATGGTAACTGCGAACACATTGGTAACCTGGTATCTTaGAGCATCCTTTGCCCAGGA +
Preference number: 4 (lower is better)
Translates to: SQTPRRSGTGENGNCEHIGNLVS*SILCPG
Trigger: TCCTGGGCAAAGGATGCTCCAAGATACCAGGTTACC...AATGTGTTCGCAGTTACCATTTTCACCCGTGCCACTCCTTCTTGGGGTCTGGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR TCA 90 bp GTGGCACGGGTGAAAATGGTAACTGCGAACACATTGGTTTCAATAAAGAGGAGGGGCTCGTTCTGGGGATaGGCACTCAGGTCTCCTTTT +
Preference number: 4 (lower is better)
Translates to: VARVKMVTANTLVSIKRRGSFWG*ALRSPF
Trigger: AAAAGGAGACCTGAGTGCTCATCCCCAGAACGAGCC...CCTCCTCTTTATTGAAACCAATGTGTTCGCAGTTACCATTTTCACCCGTGCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR TCA 90 bp TCAAGCCAGACCCCAAGAAGGAGTGGCACGGGTGAAAATGGTAACTGCGAACACGACTCATTCAGCATTTaGGAACCATTCATTGGCTGG +
Preference number: 4 (lower is better)
Translates to: SSQTPRRSGTGENGNCEHDSFSI*EPFIGW
Trigger: CCAGCCAATGAATGGTTCTCAAATGCTGAATGAGTC...GTGTTCGCAGTTACCATTTTCACCCGTGCCACTCCTTCTTGGGGTCTGGCTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR TCA 90 bp AGCCAGACCCCAAGAAGGAGTGGCACGGGTGAAAATGGTAACTGCGAACACATTAGAATTCGGTCATGTTaGAGTCATCCAGGTCGACCA +
Preference number: 4 (lower is better)
Translates to: SQTPRRSGTGENGNCEHIRIRSC*SHPGRP
Trigger: TGGTCGACCTGGATGACTTCAACATGACCGAATTCT...AATGTGTTCGCAGTTACCATTTTCACCCGTGCCACTCCTTCTTGGGGTCTGGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR GCA 90 bp AGCCAGACCCCAAGAAGGAGTGGCACGGGTGAAAATGGTAACTGCGAACACATTTCTCTCACCCACAGCTaGTCCTGCTTCTTCTCATTT +
Preference number: 4 (lower is better)
Translates to: SQTPRRSGTGENGNCEHISLTHS*SCFFSF
Trigger: AAATGAGAAGAAGCAGGAGCAGCTGTGGGTGAGAGA...AATGTGTTCGCAGTTACCATTTTCACCCGTGCCACTCCTTCTTGGGGTCTGGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR GCA 90 bp TGCTCAAGCCAGACCCCAAGAAGGAGTGGCACGGGTGAAAATGGTAACTGCGAAGTGCCTTTGTGTTTCTaGTTGACAGATGCTTGGTCA +
Preference number: 4 (lower is better)
Translates to: CSSQTPRRSGTGENGNCEVPLCF*LTDAWS
Trigger: TGACCAAGCATCTGTCAAGCAGAAACACAAAGGCAC...TTCGCAGTTACCATTTTCACCCGTGCCACTCCTTCTTGGGGTCTGGCTTGAGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR GCA 90 bp GTGGCACGGGTGAAAATGGTAACTGCGAACACATTGGTTTCAATAAAGAGGAGGCCACTGGAGAGGGTTTaGTGGGGCTCACTTTCTCTG +
Preference number: 4 (lower is better)
Translates to: VARVKMVTANTLVSIKRRPLERV*WGSLSL
Trigger: CAGAGAAAGTGAGCCCCAGCAAACCCTCTCCAGTGG...CCTCCTCTTTATTGAAACCAATGTGTTCGCAGTTACCATTTTCACCCGTGCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR GCA 90 bp GTGGCACGGGTGAAAATGGTAACTGCGAACACATTGGTTTCAATAAAGAGGAGGGCTGTGGTTTCTGCCTaGTTCTCTCCGCAGATGCTC +
Preference number: 4 (lower is better)
Translates to: VARVKMVTANTLVSIKRRAVVSA*FSPQML
Trigger: GAGCATCTGCGGAGAGAAGCAGGCAGAAACCACAGC...CCTCCTCTTTATTGAAACCAATGTGTTCGCAGTTACCATTTTCACCCGTGCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR GCA 90 bp TGCTCAAGCCAGACCCCAAGAAGGAGTGGCACGGGTGAAAATGGTAACTGCGAAGAGCTTCTCAGGATCTaGCTTTATTTCTGTGGCCTT +
Preference number: 4 (lower is better)
Translates to: CSSQTPRRSGTGENGNCEELLRI*LYFCGL
Trigger: AAGGCCACAGAAATAAAGGCAGATCCTGAGAAGCTC...TTCGCAGTTACCATTTTCACCCGTGCCACTCCTTCTTGGGGTCTGGCTTGAGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR CCA 90 bp AGCCAGACCCCAAGAAGGAGTGGCACGGGTGAAAATGGTAACTGCGAACACATTCTGGCTCTGTGGTACTaGTTTTTCTTGGAGATCCAG +
Preference number: 4 (lower is better)
Translates to: SQTPRRSGTGENGNCEHILALWY*FFLEIQ
Trigger: CTGGATCTCCAAGAAAAACCAGTACCACAGAGCCAG...AATGTGTTCGCAGTTACCATTTTCACCCGTGCCACTCCTTCTTGGGGTCTGGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR CCA 90 bp TGCTCAAGCCAGACCCCAAGAAGGAGTGGCACGGGTGAAAATGGTAACTGCGAATTGTTGCTGGCTCTGTaGTACTGGTTTTTCTTGGAG +
Preference number: 4 (lower is better)
Translates to: CSSQTPRRSGTGENGNCELLLAL*YWFFLE
Trigger: CTCCAAGAAAAACCAGTACCACAGAGCCAGCAACAA...TTCGCAGTTACCATTTTCACCCGTGCCACTCCTTCTTGGGGTCTGGCTTGAGCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR CCA 90 bp TCAAGCCAGACCCCAAGAAGGAGTGGCACGGGTGAAAATGGTAACTGCGAACACTTGTTGCTGGCTCTGTaGTACTGGTTTTTCTTGGAG +
Preference number: 4 (lower is better)
Translates to: SSQTPRRSGTGENGNCEHLLLAL*YWFFLE
Trigger: CTCCAAGAAAAACCAGTACCACAGAGCCAGCAACAA...GTGTTCGCAGTTACCATTTTCACCCGTGCCACTCCTTCTTGGGGTCTGGCTTGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR CCA 90 bp TCAAGCCAGACCCCAAGAAGGAGTGGCACGGGTGAAAATGGTAACTGCGAACACACTCACTGGGTAACCTaGTATCTTGGAGCATCCTTT +
Preference number: 4 (lower is better)
Translates to: SSQTPRRSGTGENGNCEHTHWVT*YLGASF
Trigger: AAAGGATGCTCCAAGATACCAGGTTACCCAGTGAGT...GTGTTCGCAGTTACCATTTTCACCCGTGCCACTCCTTCTTGGGGTCTGGCTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR TCA 90 bp TCAAGCCAGACCCCAAGAAGGAGTGGCACGGGTGAAAATGGTAACTGCGAACACTCCACATTTCTATTTTaGGCAGTTGATGTCCCGAGA +
Preference number: 4 (lower is better)
Translates to: SSQTPRRSGTGENGNCEHSTFLF*AVDVPR
Trigger: TCTCGGGACATCAACTGCTCAAAATAGAAATGTGGA...GTGTTCGCAGTTACCATTTTCACCCGTGCCACTCCTTCTTGGGGTCTGGCTTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR TCA 90 bp AGCCAGACCCCAAGAAGGAGTGGCACGGGTGAAAATGGTAACTGCGAACACATTTTTCTTGCAATTTCCTaGGCTTCTCAGGATCTGCCT +
Preference number: 4 (lower is better)
Translates to: SQTPRRSGTGENGNCEHIFLAIS*ASQDLP
Trigger: AGGCAGATCCTGAGAAGCTCAGGAAATTGCAAGAAA...AATGTGTTCGCAGTTACCATTTTCACCCGTGCCACTCCTTCTTGGGGTCTGGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR TCA 90 bp GTGGCACGGGTGAAAATGGTAACTGCGAACACATTGGTTTCAATAAAGAGGAGGCACCAGGTACAAGCCTaGGTTCATCAGCTCACTCTG +
Preference number: 4 (lower is better)
Translates to: VARVKMVTANTLVSIKRRHQVQA*VHQLTL
Trigger: CAGAGTGAGCTGATGAACTCAGGCTTGTACCTGGTG...CCTCCTCTTTATTGAAACCAATGTGTTCGCAGTTACCATTTTCACCCGTGCCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR GCA 90 bp AGCCAGACCCCAAGAAGGAGTGGCACGGGTGAAAATGGTAACTGCGAACACATTTTTCTGCTTGACAGATaGTTGGTCAATGGCTGGAAG +
Preference number: 4 (lower is better)
Translates to: SQTPRRSGTGENGNCEHIFLLDR*LVNGWK
Trigger: CTTCCAGCCATTGACCAAGCATCTGTCAAGCAGAAA...AATGTGTTCGCAGTTACCATTTTCACCCGTGCCACTCCTTCTTGGGGTCTGGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR GCA 90 bp TCAAGCCAGACCCCAAGAAGGAGTGGCACGGGTGAAAATGGTAACTGCGAACACTCCAGGAGACTTTCTTaGAATTTCCTGAGCTTCTCA +
Preference number: 4 (lower is better)
Translates to: SSQTPRRSGTGENGNCEHSRRLS*NFLSFS
Trigger: TGAGAAGCTCAGGAAATTGCAAGAAAGTCTCCTGGA...GTGTTCGCAGTTACCATTTTCACCCGTGCCACTCCTTCTTGGGGTCTGGCTTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR CCA 90 bp AGCCAGACCCCAAGAAGGAGTGGCACGGGTGAAAATGGTAACTGCGAACACATTTCGTCAGCACTGACCTaGATAACACCATCAGATTTC +
Preference number: 4 (lower is better)
Translates to: SQTPRRSGTGENGNCEHISSALT*ITPSDF
Trigger: GAAATCTGATGGTGTTATCCAGGTCAGTGCTGACGA...AATGTGTTCGCAGTTACCATTTTCACCCGTGCCACTCCTTCTTGGGGTCTGGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR CCA 90 bp TGCTCAAGCCAGACCCCAAGAAGGAGTGGCACGGGTGAAAATGGTAACTGCGAACATTTTCTTCCGGTCTaGGTTGTGGGTAATTTCTTG +
Preference number: 4 (lower is better)
Translates to: CSSQTPRRSGTGENGNCEHFLPV*VVGNFL
Trigger: CAAGAAATTACCCACAACCCAGACCGGAAGAAAATG...TTCGCAGTTACCATTTTCACCCGTGCCACTCCTTCTTGGGGTCTGGCTTGAGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR TCA 90 bp GTGGCACGGGTGAAAATGGTAACTGCGAACACATTGGTTTCAATAAAGAGGAGGATGGATTTCTATTTCTaGTGGGTGAGAGTGGCCGGC +
Preference number: 4 (lower is better)
Translates to: VARVKMVTANTLVSIKRRMDFYF*WVRVAG
Trigger: GCCGGCCACTCTCACCCATCAGAAATAGAAATCCAT...CCTCCTCTTTATTGAAACCAATGTGTTCGCAGTTACCATTTTCACCCGTGCCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR CCA 90 bp GTGGCACGGGTGAAAATGGTAACTGCGAACACATTGGTTTCAATAAAGAGGAGGTGCTTGGTCAATGGCTaGAAGTCTGGGCTCACACTT +
Preference number: 4 (lower is better)
Translates to: VARVKMVTANTLVSIKRRCLVNG*KSGLTL
Trigger: AAGTGTGAGCCCAGACTTCCAGCCATTGACCAAGCA...CCTCCTCTTTATTGAAACCAATGTGTTCGCAGTTACCATTTTCACCCGTGCCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR CCA 90 bp GTGGCACGGGTGAAAATGGTAACTGCGAACACATTGGTTTCAATAAAGAGGAGGCTTTGTCGACAGCTGTaGTTTCTGCCTGCTTCTCTC +
Preference number: 4 (lower is better)
Translates to: VARVKMVTANTLVSIKRRLCRQL*FLPASL
Trigger: GAGAGAAGCAGGCAGAAACCACAGCTGTCGACAAAG...CCTCCTCTTTATTGAAACCAATGTGTTCGCAGTTACCATTTTCACCCGTGCCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR CCA 90 bp GTGGCACGGGTGAAAATGGTAACTGCGAACACATTGGTTTCAATAAAGAGGAGGATGATCTTGGAGCTGTaGGCCTCCCAGAAAGTAAGC +
Preference number: 4 (lower is better)
Translates to: VARVKMVTANTLVSIKRRMILEL*ASQKVS
Trigger: GCTTACTTTCTGGGAGGCCCACAGCTCCAAGATCAT...CCTCCTCTTTATTGAAACCAATGTGTTCGCAGTTACCATTTTCACCCGTGCCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR TCA 90 bp GTGGCACGGGTGAAAATGGTAACTGCGAACACATTGGTTTCAATAAAGAGGAGGTTGTGGGTAATTTCTTaGCAACCTCTCTCTGGAAGC +
Preference number: 4 (lower is better)
Translates to: VARVKMVTANTLVSIKRRLWVIS*QPLSGS
Trigger: GCTTCCAGAGAGAGGTTGTCAAGAAATTACCCACAA...CCTCCTCTTTATTGAAACCAATGTGTTCGCAGTTACCATTTTCACCCGTGCCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR GCA 90 bp GTGGCACGGGTGAAAATGGTAACTGCGAACACATTGGTTTCAATAAAGAGGAGGTTTCTGCTTGACAGATaGTTGGTCAATGGCTGGAAG +
Preference number: 4 (lower is better)
Translates to: VARVKMVTANTLVSIKRRFLLDR*LVNGWK
Trigger: CTTCCAGCCATTGACCAAGCATCTGTCAAGCAGAAA...CCTCCTCTTTATTGAAACCAATGTGTTCGCAGTTACCATTTTCACCCGTGCCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR CCA 90 bp GTGGCACGGGTGAAAATGGTAACTGCGAACACATTGGTTTCAATAAAGAGGAGGGTCATGGAACCTAAATaGTGTCCTTCTTGGTCCTAC +
Preference number: 4 (lower is better)
Translates to: VARVKMVTANTLVSIKRRVMEPK*CPSWSY
Trigger: GTAGGACCAAGAAGGACACCATTTAGGTTCCATGAC...CCTCCTCTTTATTGAAACCAATGTGTTCGCAGTTACCATTTTCACCCGTGCCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR CCA 90 bp GTGGCACGGGTGAAAATGGTAACTGCGAACACATTGGTTTCAATAAAGAGGAGGCATTTTCTTCCGGTCTaGGTTGTGGGTAATTTCTTG +
Preference number: 4 (lower is better)
Translates to: VARVKMVTANTLVSIKRRHFLPV*VVGNFL
Trigger: CAAGAAATTACCCACAACCCAGACCGGAAGAAAATG...CCTCCTCTTTATTGAAACCAATGTGTTCGCAGTTACCATTTTCACCCGTGCCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR CAA 90 bp GGGACACAGAAAGGGCTTCTGGGTGGAGAGGTCTCTGCCGCACTCCACGACCAGTCTCCGCAGATGCTCTaGGGCTGTGCATCTCTGGGC +
Preference number: 5 (lower is better)
Translates to: GTQKGLLGGEVSAALHDQSPQML*GCASLG
Trigger: GCCCAGAGATGCACAGCCCAAGAGCATCTGCGGAGA...CTGGTCGTGGAGTGCGGCAGAGACCTCTCCACCCAGAAGCCCTTTCTGTGTCCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR CAA 90 bp GGGACTCAGCTGTTTTGCCTGTGCTGGCTGGGATGGTCCCTGTGGCTGCCCACGGAGAAGGCTGCTTTGTaGCTGGCTCTGTGGTACTGG +
Preference number: 5 (lower is better)
Translates to: GTQLFCLCWLGWSLWLPTEKAAL*LALWYW
Trigger: CCAGTACCACAGAGCCAGCAACAAAGCAGCCTTCTC...CGTGGGCAGCCACAGGGACCATCCCAGCCAGCACAGGCAAAACAGCTGAGTCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR CAA 90 bp CACGGGGGACTCAGCTGTTTTGCCTGTGCTGGCTGGGATGGTCCCTGTGGCTGCGAGAAGGCTGCTTTGTaGCTGGCTCTGTGGTACTGG +
Preference number: 5 (lower is better)
Translates to: HGGLSCFACAGWDGPCGCEKAAL*LALWYW
Trigger: CCAGTACCACAGAGCCAGCAACAAAGCAGCCTTCTC...GCAGCCACAGGGACCATCCCAGCCAGCACAGGCAAAACAGCTGAGTCCCCCGTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR CAA 90 bp GGGACTCAGCTGTTTTGCCTGTGCTGGCTGGGATGGTCCCTGTGGCTGCCCACGCAGGAGAAGGCTGCTTaGTTGCTGGCTCTGTGGTAC +
Preference number: 5 (lower is better)
Translates to: GTQLFCLCWLGWSLWLPTQEKAA*LLALWY
Trigger: GTACCACAGAGCCAGCAACAAAGCAGCCTTCTCCTG...CGTGGGCAGCCACAGGGACCATCCCAGCCAGCACAGGCAAAACAGCTGAGTCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR CAA 90 bp CACGGGGGACTCAGCTGTTTTGCCTGTGCTGGCTGGGATGGTCCCTGTGGCTGCGATTCATGGATGATCTaGGAGCTGTGGGCCTCCCAG +
Preference number: 5 (lower is better)
Translates to: HGGLSCFACAGWDGPCGCDSWMI*ELWASQ
Trigger: CTGGGAGGCCCACAGCTCCAAGATCATCCATGAATC...GCAGCCACAGGGACCATCCCAGCCAGCACAGGCAAAACAGCTGAGTCCCCCGTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR CAA 90 bp GGGACACAGAAAGGGCTTCTGGGTGGAGAGGTCTCTGCCGCACTCCACGACCAGGATTCATGGATGATCTaGGAGCTGTGGGCCTCCCAG +
Preference number: 5 (lower is better)
Translates to: GTQKGLLGGEVSAALHDQDSWMI*ELWASQ
Trigger: CTGGGAGGCCCACAGCTCCAAGATCATCCATGAATC...CTGGTCGTGGAGTGCGGCAGAGACCTCTCCACCCAGAAGCCCTTTCTGTGTCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR CAA 90 bp GGGACTCAGCTGTTTTGCCTGTGCTGGCTGGGATGGTCCCTGTGGCTGCCCACGTCACAGGAACTCTGTTaGCATGACGACCCGCTTGAA +
Preference number: 5 (lower is better)
Translates to: GTQLFCLCWLGWSLWLPTSQELC*HDDPLE
Trigger: TTCAAGCGGGTCGTCATGCAAACAGAGTTCCTGTGA...CGTGGGCAGCCACAGGGACCATCCCAGCCAGCACAGGCAAAACAGCTGAGTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR CAA 90 bp GGGACACAGAAAGGGCTTCTGGGTGGAGAGGTCTCTGCCGCACTCCACGACCAGTGGTACTGGTTTTTCTaGGAGATCCAGGGCTGGGCT +
Preference number: 5 (lower is better)
Translates to: GTQKGLLGGEVSAALHDQWYWFF*EIQGWA
Trigger: AGCCCAGCCCTGGATCTCCAAGAAAAACCAGTACCA...CTGGTCGTGGAGTGCGGCAGAGACCTCTCCACCCAGAAGCCCTTTCTGTGTCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR CAA 90 bp CACGGGGGACTCAGCTGTTTTGCCTGTGCTGGCTGGGATGGTCCCTGTGGCTGCCTCCAGGAGACTTTCTaGCAATTTCCTGAGCTTCTC +
Preference number: 5 (lower is better)
Translates to: HGGLSCFACAGWDGPCGCLQETF*QFPELL
Trigger: GAGAAGCTCAGGAAATTGCAAGAAAGTCTCCTGGAG...GCAGCCACAGGGACCATCCCAGCCAGCACAGGCAAAACAGCTGAGTCCCCCGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS TCA 90 bp CAGCAGGCTTTCTTGTTGGACAACTGGGTCTGCTCCCAGGAGTCCTaGTGCCTTTGTCGACAGCTGTGGTTTCTGCCTGCTTCTCTCCGC +
Preference number: 5 (lower is better)
Translates to: QQAFLLDNWVCSQES*CLCRQLWFLPASLR
Trigger: GCGGAGAGAAGCAGGCAGAAACCACAGCTGTCGACAAAGGCATCAGGACTCCTGGGAGCAGACCCAGTTGTCCAACAAGAAAGCCTGCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS CCA 90 bp CCTGGGCAGCTGGTGGAACTAAGGGCAGAAGGAGGCAGCAGTAATTaGTATTGGGCTGCTGGGTTGGGGAGAAAGCAAAGACGGAGCAGT +
Preference number: 5 (lower is better)
Translates to: PGQLVELRAEGGSSN*YWAAGLGRKQRRSS
Trigger: ACTGCTCCGTCTTTGCTTTCTCCCCAACCCAGCAGCCCAATACCAATTACTGCTGCCTCCTTCTGCCCTTAGTTCCACCAGCTGCCCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100332.4
ENSMUST00000151305.2
CDS-3UTR CAA 90 bp CCCCCTGCACACCACACCCCATTGGTGTTGCTCTGGCCTGCTCCTGTCCACCTGCCTTTGTGTTTCTGCTaGACAGATGCTTGGTCAATG +
Preference number: 5 (lower is better)
Translates to: PPAHHTPLVLLWPAPVHLPLCFC*TDAWSM
Trigger: CATTGACCAAGCATCTGTCAAGCAGAAACACAAAGG...CAGGTGGACAGGAGCAGGCCAGAGCAACACCAATGGGGTGTGGTGTGCAGGGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100332.4
CDS-3UTR CAA 90 bp GGGACTCAGCTGTTTTGCCTGTGCTGGCTGGGATGGTCCCTGTGGCTGCCCACGAGTGTCATGGTGCCTTaGTGTTTCTGCTTGACAGAT +
Preference number: 5 (lower is better)
Translates to: GTQLFCLCWLGWSLWLPTSVMVP*CFCLTD
Trigger: ATCTGTCAAGCAGAAACACAAAGGCACCATGACACT...CGTGGGCAGCCACAGGGACCATCCCAGCCAGCACAGGCAAAACAGCTGAGTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR CAA 90 bp GGGGACTCAGCTGTTTTGCCTGTGCTGGCTGGGATGGTCCCTGTGGCTGCCCACAGTGTCATGGTGCCTTaGTGTTTCTGCTTGACAGAT +
Preference number: 5 (lower is better)
Translates to: GDSAVLPVLAGMVPVAAHSVMVP*CFCLTD
Trigger: ATCTGTCAAGCAGAAACACAAAGGCACCATGACACT...GTGGGCAGCCACAGGGACCATCCCAGCCAGCACAGGCAAAACAGCTGAGTCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR CAA 90 bp AGAAAGGGCTTCTGGGTGGAGAGGTCTCTGCCGCACTCCACGACCAGCTCCCTTCCTGAATGTGACTCGTaGAAGCCATCTCCTGTGTAC +
Preference number: 5 (lower is better)
Translates to: RKGFWVERSLPHSTTSSLPECDS*KPSPVY
Trigger: GTACACAGGAGATGGCTTCAACGAGTCACATTCAGG...AAGGGAGCTGGTCGTGGAGTGCGGCAGAGACCTCTCCACCCAGAAGCCCTTTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR CAA 90 bp CACGGGGGACTCAGCTGTTTTGCCTGTGCTGGCTGGGATGGTCCCTGTGGCTGCGTTGTGGGTAATTTCTaGACAACCTCTCTCTGGAAG +
Preference number: 5 (lower is better)
Translates to: HGGLSCFACAGWDGPCGCVVGNF*TTSLWK
Trigger: CTTCCAGAGAGAGGTTGTCAAGAAATTACCCACAAC...GCAGCCACAGGGACCATCCCAGCCAGCACAGGCAAAACAGCTGAGTCCCCCGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS CCA 90 bp CAGCTGGTGGAACTAAGGGCAGAAGGAGGCAGCAGTAATTGGTATTaGGCTGCTGGGTTGGGGAGAAAGCAAAGACGGAGCAGTAAGGGG +
Preference number: 5 (lower is better)
Translates to: QLVELRAEGGSSNWY*AAGLGRKQRRSSKG
Trigger: CCCCTTACTGCTCCGTCTTTGCTTTCTCCCCAACCCAGCAGCCCAATACCAATTACTGCTGCCTCCTTCTGCCCTTAGTTCCACCAGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100332.4
ENSMUST00000151305.2
CDS-3UTR CAA 90 bp GACGCCCATATCAAGGGAAGTGTCAGTGCGCTGTCTCCTCTTCCTGTCCCCCTGTCACAGGAACTCTGTTaGCATGACGACCCGCTTGAA +
Preference number: 5 (lower is better)
Translates to: DAHIKGSVSALSPLPVPLSQELC*HDDPLE
Trigger: TTCAAGCGGGTCGTCATGCAAACAGAGTTCCTGTGA...CAGGGGGACAGGAAGAGGAGACAGCGCACTGACACTTCCCTTGATATGGGCGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100332.4
CDS-3UTR CAA 90 bp GGGACTCAGCTGTTTTGCCTGTGCTGGCTGGGATGGTCCCTGTGGCTGCCCACGTTGGTCTCCTCTTCCTaGATAAAATCTTTGGTGCCA +
Preference number: 5 (lower is better)
Translates to: GTQLFCLCWLGWSLWLPTLVSSS*IKSLVP
Trigger: TGGCACCAAAGATTTTATCAAGGAAGAGGAGACCAA...CGTGGGCAGCCACAGGGACCATCCCAGCCAGCACAGGCAAAACAGCTGAGTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR CAA 90 bp CACGGGGGACTCAGCTGTTTTGCCTGTGCTGGCTGGGATGGTCCCTGTGGCTGCTTGGTCTCCTCTTCCTaGATAAAATCTTTGGTGCCA +
Preference number: 5 (lower is better)
Translates to: HGGLSCFACAGWDGPCGCLVSSS*IKSLVP
Trigger: TGGCACCAAAGATTTTATCAAGGAAGAGGAGACCAA...GCAGCCACAGGGACCATCCCAGCCAGCACAGGCAAAACAGCTGAGTCCCCCGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR CAA 90 bp AGCCAGACCCCAAGAAGGAGTGGCACGGGTGAAAATGGTAACTGCGAACACATTTCTCCGCAGATGCTCTaGGGCTGTGCATCTCTGGGC +
Preference number: 5 (lower is better)
Translates to: SQTPRRSGTGENGNCEHISPQML*GCASLG
Trigger: GCCCAGAGATGCACAGCCCAAGAGCATCTGCGGAGA...AATGTGTTCGCAGTTACCATTTTCACCCGTGCCACTCCTTCTTGGGGTCTGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR CAA 90 bp CACGGGGGACTCAGCTGTTTTGCCTGTGCTGGCTGGGATGGTCCCTGTGGCTGCACCACTATAGTAATGTaGCCAGTCTCTCTCGTGATT +
Preference number: 5 (lower is better)
Translates to: HGGLSCFACAGWDGPCGCTTIVM*PVSLVI
Trigger: AATCACGAGAGAGACTGGCAACATTACTATAGTGGT...GCAGCCACAGGGACCATCCCAGCCAGCACAGGCAAAACAGCTGAGTCCCCCGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR CAA 90 bp GGGACACAGAAAGGGCTTCTGGGTGGAGAGGTCTCTGCCGCACTCCACGACCAGGTTGTGGGTAATTTCTaGACAACCTCTCTCTGGAAG +
Preference number: 5 (lower is better)
Translates to: GTQKGLLGGEVSAALHDQVVGNF*TTSLWK
Trigger: CTTCCAGAGAGAGGTTGTCAAGAAATTACCCACAAC...CTGGTCGTGGAGTGCGGCAGAGACCTCTCCACCCAGAAGCCCTTTCTGTGTCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS TCA 90 bp GGACTCATTCAGCATTTGAGAACCATTCATTGGCTGGAATGTCTGTaGGAGGGCAGTGTGGGGCTCGTTCTGGGGATGAGCACTCAGGTC +
Preference number: 5 (lower is better)
Translates to: GLIQHLRTIHWLECL*EGSVGLVLGMSTQV
Trigger: GACCTGAGTGCTCATCCCCAGAACGAGCCCCACACTGCCCTCTCACAGACATTCCAGCCAATGAATGGTTCTCAAATGCTGAATGAGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS CCA 90 bp CCACTGGGGTTCTCTTTAGCCAACTCACTGGGTAACCTGGTATCTTaGAGCATCCTTTGCCCAGGAGAAGGCTGCTTTGTTGCTGGCTCT +
Preference number: 5 (lower is better)
Translates to: PLGFSLANSLGNLVS*SILCPGEGCFVAGS
Trigger: AGAGCCAGCAACAAAGCAGCCTTCTCCTGGGCAAAGGATGCTCCAAGATACCAGGTTACCCAGTGAGTTGGCTAAAGAGAACCCCAGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS CCA 90 bp CTGTCTTCCACAGTACCACCGCTGGACACATCGTCAGCACTGACCTaGATAACACCATCAGATTTCGCATCCCCTAGAACAGGGGTCTTC +
Preference number: 5 (lower is better)
Translates to: LSSTVPPLDTSSALT*ITPSDFASPRTGVF
Trigger: GAAGACCCCTGTTCTAGGGGATGCGAAATCTGATGGTGTTATCCAGGTCAGTGCTGACGATGTGTCCAGCGGTGGTACTGTGGAAGACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR CAA 90 bp AGCCAGACCCCAAGAAGGAGTGGCACGGGTGAAAATGGTAACTGCGAACACATTCAGGAGAAGGCTGCTTaGTTGCTGGCTCTGTGGTAC +
Preference number: 5 (lower is better)
Translates to: SQTPRRSGTGENGNCEHIQEKAA*LLALWY
Trigger: GTACCACAGAGCCAGCAACAAAGCAGCCTTCTCCTG...AATGTGTTCGCAGTTACCATTTTCACCCGTGCCACTCCTTCTTGGGGTCTGGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS TCA 90 bp TCTGTGCCCGGGATTGCTGGTGCTTGTGGTAGAATTCGGTCATGTTaGAGTCATCCAGGTCGACCAGTAGGCCTTGCTTACACATCTCAC +
Preference number: 5 (lower is better)
Translates to: SVPGIAGACGRIRSC*SHPGRPVGLAYTSH
Trigger: GTGAGATGTGTAAGCAAGGCCTACTGGTCGACCTGGATGACTTCAACATGACCGAATTCTACCACAAGCACCAGCAATCCCGGGCACAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR CAA 90 bp TGCTCAAGCCAGACCCCAAGAAGGAGTGGCACGGGTGAAAATGGTAACTGCGAATCACAGGAACTCTGTTaGCATGACGACCCGCTTGAA +
Preference number: 5 (lower is better)
Translates to: CSSQTPRRSGTGENGNCESQELC*HDDPLE
Trigger: TTCAAGCGGGTCGTCATGCAAACAGAGTTCCTGTGA...TTCGCAGTTACCATTTTCACCCGTGCCACTCCTTCTTGGGGTCTGGCTTGAGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR CAA 90 bp AGACGCCCATATCAAGGGAAGTGTCAGTGCGCTGTCTCCTCTTCCTGTCCCCCTAGTGTCATGGTGCCTTaGTGTTTCTGCTTGACAGAT +
Preference number: 5 (lower is better)
Translates to: RRPYQGKCQCAVSSSCPPSVMVP*CFCLTD
Trigger: ATCTGTCAAGCAGAAACACAAAGGCACCATGACACT...AGGGGGACAGGAAGAGGAGACAGCGCACTGACACTTCCCTTGATATGGGCGTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100332.4
CDS-3UTR CAA 90 bp AGCCAGACCCCAAGAAGGAGTGGCACGGGTGAAAATGGTAACTGCGAACACATTTGGTACTGGTTTTTCTaGGAGATCCAGGGCTGGGCT +
Preference number: 5 (lower is better)
Translates to: SQTPRRSGTGENGNCEHIWYWFF*EIQGWA
Trigger: AGCCCAGCCCTGGATCTCCAAGAAAAACCAGTACCA...AATGTGTTCGCAGTTACCATTTTCACCCGTGCCACTCCTTCTTGGGGTCTGGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR CAA 90 bp TCAAGCCAGACCCCAAGAAGGAGTGGCACGGGTGAAAATGGTAACTGCGAACACCTCCAGGAGACTTTCTaGCAATTTCCTGAGCTTCTC +
Preference number: 5 (lower is better)
Translates to: SSQTPRRSGTGENGNCEHLQETF*QFPELL
Trigger: GAGAAGCTCAGGAAATTGCAAGAAAGTCTCCTGGAG...GTGTTCGCAGTTACCATTTTCACCCGTGCCACTCCTTCTTGGGGTCTGGCTTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS TCA 90 bp CTCGGAACTTTCATTTTCTTCCGGTCTGGGTTGTGGGTAATTTCTTaGCAACCTCTCTCTGGAAGCCCGCCTGTAGTTGAGTGCCATGAG +
Preference number: 5 (lower is better)
Translates to: LGTFIFFRSGLWVIS*QPLSGSPPVVECHE
Trigger: CTCATGGCACTCAACTACAGGCGGGCTTCCAGAGAGAGGTTGTCAAGAAATTACCCACAACCCAGACCGGAAGAAAATGAAAGTTCCGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS-3UTR CAA 90 bp AGCCAGACCCCAAGAAGGAGTGGCACGGGTGAAAATGGTAACTGCGAACACATTCCTTTGTGTTTCTGCTaGACAGATGCTTGGTCAATG +
Preference number: 5 (lower is better)
Translates to: SQTPRRSGTGENGNCEHIPLCFC*TDAWSM
Trigger: CATTGACCAAGCATCTGTCAAGCAGAAACACAAAGG...AATGTGTTCGCAGTTACCATTTTCACCCGTGCCACTCCTTCTTGGGGTCTGGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS GCA 90 bp CTCACTTTCTCTGACTTCTTTAGTGTCATGGTGCCTTTGTGTTTCTaGTTGACAGATGCTTGGTCAATGGCTGGAAGTCTGGGCTCACAC +
Preference number: 5 (lower is better)
Translates to: LTFSDFFSVMVPLCF*LTDAWSMAGSLGSH
Trigger: GTGTGAGCCCAGACTTCCAGCCATTGACCAAGCATCTGTCAAGCAGAAACACAAAGGCACCATGACACTAAAGAAGTCAGAGAAAGTGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049995.10
ENSMUST00000100332.4
ENSMUST00000138977.8
CDS CCA 90 bp TTCTTTAGTGTCATGGTGCCTTTGTGTTTCTGCTTGACAGATGCTTaGTCAATGGCTGGAAGTCTGGGCTCACACTTAGCCGAAGATGTT +
Preference number: 5 (lower is better)
Translates to: FFSVMVPLCFCLTDA*SMAGSLGSHLAEDV
Trigger: AACATCTTCGGCTAAGTGTGAGCCCAGACTTCCAGCCATTGACCAAGCATCTGTCAAGCAGAAACACAAAGGCACCATGACACTAAAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049995.10
ENSMUST00000100332.4
ENSMUST00000138977.8
CDS CCA 90 bp TCCTCTTCCTTGATAAAATCTTTGGTGCCACTGGAGAGGGTTTGCTaGGGCTCACTTTCTCTGACTTCTTTAGTGTCATGGTGCCTTTGT +
Preference number: 5 (lower is better)
Translates to: SSSLIKSLVPLERVC*GSLSLTSLVSWCLC
Trigger: ACAAAGGCACCATGACACTAAAGAAGTCAGAGAAAGTGAGCCCCAGCAAACCCTCTCCAGTGGCACCAAAGATTTTATCAAGGAAGAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS GCA 90 bp GAAAACCGCGACCTGTCACTTGTATCTCTCACCCACAGCTGCTCCTaGTTCTTCTCATTTGGTTCTTTCTTGTTTTCCTGTCGTTTCAAA +
Preference number: 5 (lower is better)
Translates to: ENRDLSLVSLTHSCS*FFSFGSFLFSCRFK
Trigger: TTTGAAACGACAGGAAAACAAGAAAGAACCAAATGAGAAGAAGCAGGAGCAGCTGTGGGTGAGAGATACAAGTGACAGGTCGCGGTTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049995.10
ENSMUST00000100332.4
ENSMUST00000138977.8
CDS-3UTR CAA 90 bp GTGGCACGGGTGAAAATGGTAACTGCGAACACATTGGTTTCAATAAAGAGGAGGACCACTATAGTAATGTaGCCAGTCTCTCTCGTGATT +
Preference number: 5 (lower is better)
Translates to: VARVKMVTANTLVSIKRRTTIVM*PVSLVI
Trigger: AATCACGAGAGAGACTGGCAACATTACTATAGTGGT...CCTCCTCTTTATTGAAACCAATGTGTTCGCAGTTACCATTTTCACCCGTGCCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS CCA 72 bp TCCCACACAGCCGCAAGGCTCCAGGAGGGGGTTGGCTaGGGAACCCCCGGCTATCTGACAGATTCGACACAA +
Preference number: 6 (lower is better)
Translates to: SHTAARLQEGVG*GTPGYLTDSTQ
Trigger: TTGTGTCGAATCTGTCAGATAGCCGGGGGTTCCCCAGCCAACCCCCTCCTGGAGCCTTGCGGCTGTGTGGGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS CAA 72 bp GGACAACTGGGTCTGCTCCCAGGAGTCCTGATGCCTTaGTCGACAGCTGTGGTTTCTGCCTGCTTCTCTCCG +
Preference number: 6 (lower is better)
Translates to: GQLGLLPGVLMP*STAVVSACFSP
Trigger: CGGAGAGAAGCAGGCAGAAACCACAGCTGTCGACAAAGGCATCAGGACTCCTGGGAGCAGACCCAGTTGTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS TCA 72 bp TCTCCGCAGATGCTCTTGGGCTGTGCATCTCTGGGCTaGCTGTCAATCTCCCCAGGTTTGGTCTCCTCTTCC +
Preference number: 6 (lower is better)
Translates to: SPQMLLGCASLG*LSISPGLVSSS
Trigger: GGAAGAGGAGACCAAACCTGGGGAGATTGACAGTCAGCCCAGAGATGCACAGCCCAAGAGCATCTGCGGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
ENSMUST00000151305.2
CDS CCA 72 bp GGGGCTGCTCGCTGCTGTCACCTGGAGAGGGTTTGCTaGGGCTCACTTTCTCTGACTTCTTTAGTGTCATGG +
Preference number: 6 (lower is better)
Translates to: GAARCCHLERVC*GSLSLTSLVSW
Trigger: CCATGACACTAAAGAAGTCAGAGAAAGTGAGCCCCAGCAAACCCTCTCCAGGTGACAGCAGCGAGCAGCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100332.4
ENSMUST00000151305.2
CDS TCA 72 bp TGTCCTTCTTGGTCCTACCACGGTGGCGGGGAGGAGTaGAGGTCCCAAGGACTCATTCAGCATTTGAGAACC +
Preference number: 6 (lower is better)
Translates to: CPSWSYHGGGEE*RSQGLIQHLRT
Trigger: GGTTCTCAAATGCTGAATGAGTCCTTGGGACCTTCACTCCTCCCCGCCACCGTGGTAGGACCAAGAAGGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS GCA 72 bp ACAGGGGCTGCTCGCTGCTGTCACCTGGAGAGGGTTTaGTGGGGCTCACTTTCTCTGACTTCTTTAGTGTCA +
Preference number: 6 (lower is better)
Translates to: TGAARCCHLERV*WGSLSLTSLVS
Trigger: TGACACTAAAGAAGTCAGAGAAAGTGAGCCCCAGCAAACCCTCTCCAGGTGACAGCAGCGAGCAGCCCCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100332.4
ENSMUST00000151305.2
CDS CAA 90 bp TTTCTTGTTGGACAACTGGGTCTGCTCCCAGGAGTCCTGATGCCTTaGTCGACAGCTGTGGTTTCTGCCTGCTTCTCTCCGCAGATGCTC +
Preference number: 6 (lower is better)
Translates to: FLVGQLGLLPGVLMP*STAVVSACFSPQML
Trigger: GAGCATCTGCGGAGAGAAGCAGGCAGAAACCACAGCTGTCGACAAAGGCATCAGGACTCCTGGGAGCAGACCCAGTTGTCCAACAAGAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS CAA 90 bp AGTCCACTCAAAGTCCATTCTCTGCTCCCAGGAGTCCTGATGCCTTaGTCGACAGCTGTGGTTTCTGCCTGCTTCTCTCCGCAGATGCTC +
Preference number: 6 (lower is better)
Translates to: SPLKVHSLLPGVLMP*STAVVSACFSPQML
Trigger: GAGCATCTGCGGAGAGAAGCAGGCAGAAACCACAGCTGTCGACAAAGGCATCAGGACTCCTGGGAGCAGAGAATGGACTTTGAGTGGACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151305.2
CDS TCA 72 bp TTCTTGTTGGACAACTGGGTCTGCTCCCAGGAGTCCTaGTGCCTTTGTCGACAGCTGTGGTTTCTGCCTGCT +
Preference number: 6 (lower is better)
Translates to: FLLDNWVCSQES*CLCRQLWFLPA
Trigger: AGCAGGCAGAAACCACAGCTGTCGACAAAGGCATCAGGACTCCTGGGAGCAGACCCAGTTGTCCAACAAGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS CCA 72 bp GAACTAAGGGCAGAAGGAGGCAGCAGTAATTGGTATTaGGCTGCTGGGTTGGGGAGAAAGCAAAGACGGAGC +
Preference number: 6 (lower is better)
Translates to: ELRAEGGSSNWY*AAGLGRKQRRS
Trigger: GCTCCGTCTTTGCTTTCTCCCCAACCCAGCAGCCCAATACCAATTACTGCTGCCTCCTTCTGCCCTTAGTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100332.4
ENSMUST00000151305.2
CDS CAA 72 bp TGCATGACGACCCGCTTGAAAACCGCGACCTGTCACTaGTATCTCTCACCCACAGCTGCTCCTGCTTCTTCT +
Preference number: 6 (lower is better)
Translates to: CMTTRLKTATCH*YLSPTAAPASS
Trigger: AGAAGAAGCAGGAGCAGCTGTGGGTGAGAGATACAAGTGACAGGTCGCGGTTTTCAAGCGGGTCGTCATGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049995.10
ENSMUST00000100332.4
ENSMUST00000138977.8
CDS CAA 72 bp AAAGTCCATTCTCTGCTCCCAGGAGTCCTGATGCCTTaGTCGACAGCTGTGGTTTCTGCCTGCTTCTCTCCG +
Preference number: 6 (lower is better)
Translates to: KVHSLLPGVLMP*STAVVSACFSP
Trigger: CGGAGAGAAGCAGGCAGAAACCACAGCTGTCGACAAAGGCATCAGGACTCCTGGGAGCAGAGAATGGACTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151305.2
CDS GCA 72 bp TTGAAGCCATCTCCTGTGTACCCTGGGCTTCATCACTaGGGCCTTCAGCAGCGGCCAATGGATTTCTATTTC +
Preference number: 6 (lower is better)
Translates to: LKPSPVYPGLHH*GLQQRPMDFYF
Trigger: GAAATAGAAATCCATTGGCCGCTGCTGAAGGCCGCAGTGATGAAGCCCAGGGTACACAGGAGATGGCTTCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS CCA 72 bp AGCTTAGTCTCATTTGCACACAGCAGGCTTTCTTGTTaGACAACTGGGTCTGCTCCCAGGAGTCCTGATGCC +
Preference number: 6 (lower is better)
Translates to: SLVSFAHSRLSC*TTGSAPRSPDA
Trigger: GGCATCAGGACTCCTGGGAGCAGACCCAGTTGTCCAACAAGAAAGCCTGCTGTGTGCAAATGAGACTAAGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS CAA 72 bp GATCTGCCAGTAATGGAGGCTCCTGAATGTGACTCGTaGAAGCCATCTCCTGTGTACCCTGGGCTTCATCAC +
Preference number: 6 (lower is better)
Translates to: DLPVMEAPECDS*KPSPVYPGLHH
Trigger: GTGATGAAGCCCAGGGTACACAGGAGATGGCTTCAACGAGTCACATTCAGGAGCCTCCATTACTGGCAGATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS CAA 90 bp GGAGCAGTGACCCATGAGCACTGTAAGGTGGATTCATGGATGATCTaGGAGCTGTGGGCCTCCCAGAAAGTAAGCAGTCAAATGAGGTCC +
Preference number: 6 (lower is better)
Translates to: GAVTHEHCKVDSWMI*ELWASQKVSSQMRS
Trigger: GGACCTCATTTGACTGCTTACTTTCTGGGAGGCCCACAGCTCCAAGATCATCCATGAATCCACCTTACAGTGCTCATGGGTCACTGCTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS TCA 72 bp GGGATTGCTGGTGCTTGTGGTAGAATTCGGTCATGTTaGAGTCATCCAGGTCGACCAGTAGGCCTTGCTTAC +
Preference number: 6 (lower is better)
Translates to: GIAGACGRIRSC*SHPGRPVGLAY
Trigger: GTAAGCAAGGCCTACTGGTCGACCTGGATGACTTCAACATGACCGAATTCTACCACAAGCACCAGCAATCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS CCA 72 bp GTCATGGTGCCTTTGTGTTTCTGCTTGACAGATGCTTaGTCAATGGCTGGAAGTCTGGGCTCACACTTAGCC +
Preference number: 6 (lower is better)
Translates to: VMVPLCFCLTDA*SMAGSLGSHLA
Trigger: GGCTAAGTGTGAGCCCAGACTTCCAGCCATTGACCAAGCATCTGTCAAGCAGAAACACAAAGGCACCATGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049995.10
ENSMUST00000100332.4
ENSMUST00000138977.8
CDS CCA 72 bp ACAGTACCACCGCTGGACACATCGTCAGCACTGACCTaGATAACACCATCAGATTTCGCATCCCCTAGAACA +
Preference number: 6 (lower is better)
Translates to: TVPPLDTSSALT*ITPSDFASPRT
Trigger: TGTTCTAGGGGATGCGAAATCTGATGGTGTTATCCAGGTCAGTGCTGACGATGTGTCCAGCGGTGGTACTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS CCA 72 bp AAGGAGGCAGCAGTAATTGGTATTGGGCTGCTGGGTTaGGGAGAAAGCAAAGACGGAGCAGTAAGGGGAATA +
Preference number: 6 (lower is better)
Translates to: KEAAVIGIGLLG*GESKDGAVRGI
Trigger: TATTCCCCTTACTGCTCCGTCTTTGCTTTCTCCCCAACCCAGCAGCCCAATACCAATTACTGCTGCCTCCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100332.4
ENSMUST00000151305.2
CDS CAA 72 bp GTCCCAAGGACTCATTCAGCATTTGAGAACCATTCATaGGCTGGAATGTCTGTGAGAGGGCAGTGTGGGGCT +
Preference number: 6 (lower is better)
Translates to: VPRTHSAFENHS*AGMSVRGQCGA
Trigger: AGCCCCACACTGCCCTCTCACAGACATTCCAGCCAATGAATGGTTCTCAAATGCTGAATGAGTCCTTGGGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS CAA 72 bp TGGGAGAGTCCCCTAAGGCCACACTGCTTTGTGGATTaGGTAGATCTGCCAGTAATGGAGGCTCCTGAATGT +
Preference number: 6 (lower is better)
Translates to: WESPLRPHCFVD*VDLPVMEAPEC
Trigger: ACATTCAGGAGCCTCCATTACTGGCAGATCTACCAAATCCACAAAGCAGTGTGGCCTTAGGGGACTCTCCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS TCA 72 bp GGGAGGAGTGAAGGTCCCAAGGACTCATTCAGCATTTaGGAACCATTCATTGGCTGGAATGTCTGTGAGAGG +
Preference number: 6 (lower is better)
Translates to: GRSEGPKDSFSI*EPFIGWNVCER
Trigger: CCTCTCACAGACATTCCAGCCAATGAATGGTTCTCAAATGCTGAATGAGTCCTTGGGACCTTCACTCCTCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS CCA 72 bp CACTGTAAGGTGGATTCATGGATGATCTTGGAGCTGTaGGCCTCCCAGAAAGTAAGCAGTCAAATGAGGTCC +
Preference number: 6 (lower is better)
Translates to: HCKVDSWMILEL*ASQKVSSQMRS
Trigger: GGACCTCATTTGACTGCTTACTTTCTGGGAGGCCCACAGCTCCAAGATCATCCATGAATCCACCTTACAGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS CAA 72 bp TGTCATGGTGCCTTTGTGTTTCTGCTTGACAGATGCTaGGTCAATGGCTGGAAGTCTGGGCTCACACTTAGC +
Preference number: 6 (lower is better)
Translates to: CHGAFVFLLDRC*VNGWKSGLTLS
Trigger: GCTAAGTGTGAGCCCAGACTTCCAGCCATTGACCAAGCATCTGTCAAGCAGAAACACAAAGGCACCATGACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049995.10
ENSMUST00000100332.4
ENSMUST00000138977.8
CDS CAA 72 bp ACCCATGAGCACTGTAAGGTGGATTCATGGATGATCTaGGAGCTGTGGGCCTCCCAGAAAGTAAGCAGTCAA +
Preference number: 6 (lower is better)
Translates to: THEHCKVDSWMI*ELWASQKVSSQ
Trigger: TTGACTGCTTACTTTCTGGGAGGCCCACAGCTCCAAGATCATCCATGAATCCACCTTACAGTGCTCATGGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS TCA 72 bp TCTGAGTCCACCTTATGCTGCATATCCCGTAGATACTaGACATCGCTGACGAACTTCTGCCTGTCCCTTGTT +
Preference number: 6 (lower is better)
Translates to: SESTLCCISRRY*TSLTNFCLSLV
Trigger: AACAAGGGACAGGCAGAAGTTCGTCAGCGATGTTCAGTATCTACGGGATATGCAGCATAAGGTGGACTCAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049995.10
ENSMUST00000100332.4
ENSMUST00000138977.8
CDS TCA 72 bp TTCATTTTCTTCCGGTCTGGGTTGTGGGTAATTTCTTaGCAACCTCTCTCTGGAAGCCCGCCTGTAGTTGAG +
Preference number: 6 (lower is better)
Translates to: FIFFRSGLWVIS*QPLSGSPPVVE
Trigger: CTCAACTACAGGCGGGCTTCCAGAGAGAGGTTGTCAAGAAATTACCCACAACCCAGACCGGAAGAAAATGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS GCA 72 bp GTCATGTTGAAGTCATCCAGGTCGACCAGTAGGCCTTaGTTACACATCTCACAGGTCTTTACAGTGCCTAGA +
Preference number: 6 (lower is better)
Translates to: VMLKSSRSTSRP*LHISQVFTVPR
Trigger: TCTAGGCACTGTAAAGACCTGTGAGATGTGTAAGCAAGGCCTACTGGTCGACCTGGATGACTTCAACATGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS CAA 90 bp TGGTCAATGGCTGGAAGTCTGGGCTCACACTTAGCCGAAGATGTTTaGGTAGATAATCTTGCTTCACTGCGAGAATCCTCCTCACAGGAA +
Preference number: 6 (lower is better)
Translates to: WSMAGSLGSHLAEDV*VDNLASLRESSSQE
Trigger: TTCCTGTGAGGAGGATTCTCGCAGTGAAGCAAGATTATCTACCAAAACATCTTCGGCTAAGTGTGAGCCCAGACTTCCAGCCATTGACCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049995.10
ENSMUST00000100332.4
ENSMUST00000138977.8
CDS CAA 90 bp TTGCTGGGGCTCACTTTCTCTGACTTCTTTAGTGTCATGGTGCCTTaGTGTTTCTGCTTGACAGATGCTTGGTCAATGGCTGGAAGTCTG +
Preference number: 6 (lower is better)
Translates to: LLGLTFSDFFSVMVP*CFCLTDAWSMAGSL
Trigger: CAGACTTCCAGCCATTGACCAAGCATCTGTCAAGCAGAAACACAAAGGCACCATGACACTAAAGAAGTCAGAGAAAGTGAGCCCCAGCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049995.10
ENSMUST00000100332.4
ENSMUST00000138977.8
CDS TCA 72 bp CCTTATGCTGCATATCCCGTAGATACTGAACATCGCTaGCGAACTTCTGCCTGTCCCTTGTTTCATGCAACA +
Preference number: 6 (lower is better)
Translates to: PYAAYPVDTEHR*RTSACPLFHAT
Trigger: TGTTGCATGAAACAAGGGACAGGCAGAAGTTCGTCAGCGATGTTCAGTATCTACGGGATATGCAGCATAAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049995.10
ENSMUST00000100332.4
ENSMUST00000138977.8
CDS TCA 72 bp ACTTCTTTAGTGTCATGGTGCCTTTGTGTTTCTGCTTaGCAGATGCTTGGTCAATGGCTGGAAGTCTGGGCT +
Preference number: 6 (lower is better)
Translates to: TSLVSWCLCVSA*QMLGQWLEVWA
Trigger: AGCCCAGACTTCCAGCCATTGACCAAGCATCTGTCAAGCAGAAACACAAAGGCACCATGACACTAAAGAAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049995.10
ENSMUST00000100332.4
ENSMUST00000138977.8
CDS CCA 72 bp TATTGCAGAATAAAAATCTTCGTCATGGAACCTAAATaGTGTCCTTCTTGGTCCTACCACGGTGGCGGGGAG +
Preference number: 6 (lower is better)
Translates to: YCRIKIFVMEPK*CPSWSYHGGGE
Trigger: CTCCCCGCCACCGTGGTAGGACCAAGAAGGACACCATTTAGGTTCCATGACGAAGATTTTTATTCTGCAATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS CAA 72 bp ACCACTATAGTAATGTTGCCAGTCTCTCTCGTGATTTaGAACAGCAGACCTGTCTTCCACAGTACCACCGCT +
Preference number: 6 (lower is better)
Translates to: TTIVMLPVSLVI*NSRPVFHSTTA
Trigger: AGCGGTGGTACTGTGGAAGACAGGTCTGCTGTTCAAAATCACGAGAGAGACTGGCAACATTACTATAGTGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS CAA 90 bp ACTTTCTCTGACTTCTTTAGTGTCATGGTGCCTTTGTGTTTCTGCTaGACAGATGCTTGGTCAATGGCTGGAAGTCTGGGCTCACACTTA +
Preference number: 6 (lower is better)
Translates to: TFSDFFSVMVPLCFC*TDAWSMAGSLGSHL
Trigger: TAAGTGTGAGCCCAGACTTCCAGCCATTGACCAAGCATCTGTCAAGCAGAAACACAAAGGCACCATGACACTAAAGAAGTCAGAGAAAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049995.10
ENSMUST00000100332.4
ENSMUST00000138977.8
CDS GCA 72 bp TCTGACTTCTTTAGTGTCATGGTGCCTTTGTGTTTCTaGTTGACAGATGCTTGGTCAATGGCTGGAAGTCTG +
Preference number: 6 (lower is better)
Translates to: SDFFSVMVPLCF*LTDAWSMAGSL
Trigger: CAGACTTCCAGCCATTGACCAAGCATCTGTCAAGCAGAAACACAAAGGCACCATGACACTAAAGAAGTCAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049995.10
ENSMUST00000100332.4
ENSMUST00000138977.8
CDS CCA 72 bp TTTGTGTTTCTGCTTGACAGATGCTTGGTCAATGGCTaGAAGTCTGGGCTCACACTTAGCCGAAGATGTTTT +
Preference number: 6 (lower is better)
Translates to: FVFLLDRCLVNG*KSGLTLSRRCF
Trigger: AAAACATCTTCGGCTAAGTGTGAGCCCAGACTTCCAGCCATTGACCAAGCATCTGTCAAGCAGAAACACAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049995.10
ENSMUST00000100332.4
ENSMUST00000138977.8
CDS CCA 72 bp TTGATAAAATCTTTGGTGCCACTGGAGAGGGTTTGCTaGGGCTCACTTTCTCTGACTTCTTTAGTGTCATGG +
Preference number: 6 (lower is better)
Translates to: LIKSLVPLERVC*GSLSLTSLVSW
Trigger: CCATGACACTAAAGAAGTCAGAGAAAGTGAGCCCCAGCAAACCCTCTCCAGTGGCACCAAAGATTTTATCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS CAA 72 bp CTCACTTTCTCTGACTTCTTTAGTGTCATGGTGCCTTaGTGTTTCTGCTTGACAGATGCTTGGTCAATGGCT +
Preference number: 6 (lower is better)
Translates to: LTFSDFFSVMVP*CFCLTDAWSMA
Trigger: AGCCATTGACCAAGCATCTGTCAAGCAGAAACACAAAGGCACCATGACACTAAAGAAGTCAGAGAAAGTGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049995.10
ENSMUST00000100332.4
ENSMUST00000138977.8
CDS TCA 72 bp GGTTCTTTCTTGTTTTCCTGTCGTTTCAAACAAGCCTaGTATTCTGAGTCCACCTTATGCTGCATATCCCGT +
Preference number: 6 (lower is better)
Translates to: GSFLFSCRFKQA*YSESTLCCISR
Trigger: ACGGGATATGCAGCATAAGGTGGACTCAGAATATCAGGCTTGTTTGAAACGACAGGAAAACAAGAAAGAACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049995.10
ENSMUST00000100332.4
ENSMUST00000138977.8
CDS GCA 72 bp GTAGGCCTTGCTTACACATCTCACAGGTCTTTACAGTaGCTAGATCTGCTCCTGATGTTATTTTCACTTTCA +
Preference number: 6 (lower is better)
Translates to: VGLAYTSHRSLQ*LDLLLMLFSLS
Trigger: TGAAAGTGAAAATAACATCAGGAGCAGATCTAGGCACTGTAAAGACCTGTGAGATGTGTAAGCAAGGCCTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8
CDS CAA 90 bp TGTCACTTGTATCTCTCACCCACAGCTGCTCCTGCTTCTTCTCATTaGGTTCTTTCTTGTTTTCCTGTCGTTTCAAACAAGCCTGATATT +
Preference number: 6 (lower is better)
Translates to: CHLYLSPTAAPASSH*VLSCFPVVSNKPDI
Trigger: AATATCAGGCTTGTTTGAAACGACAGGAAAACAAGAAAGAACCAAATGAGAAGAAGCAGGAGCAGCTGTGGGTGAGAGATACAAGTGACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049995.10
ENSMUST00000100332.4
ENSMUST00000138977.8
CDS CAA 90 bp TTCATCCATGACACCAGAGACTCTAACGGTGGTTCCGTTATCATTTaGATTTGCAAAATCAGATACTGCAAAGAAAGTAAAAGGTATATT +
Preference number: 6 (lower is better)
Translates to: FIHDTRDSNGGSVII*ICKIRYCKESKRYI
Trigger: AATATACCTTTTACTTTCTTTGCAGTATCTGATTTTGCAAATCAAAATGATAACGGAACCACCGTTAGAGTCTCTGGTGTCATGGATGAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049995.10
ENSMUST00000138977.8