Pregenerated sensors for MAPRE1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027479Ensembl transcript IDs: ENSMUST00000028981.9
Found 103 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AATGTGTTTAGCCCTTCACCTGGGAACAGCAGGATGAAAGCTGCCTaGACACAGAGGAGCTGGATGCCACCAGCCACCAGCCACCAAGCT | + |
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Preference number: 1 (lower is better) Translates to: NVFSPSPGNSRMKAA*TQRSWMPPATSHQA Trigger: AGCTTGGTGGCTGGTGGCTGGTGGCATCCAGCTCCTCTGTGTTCAGGCAGCTTTCATCCTGCTGTTCCCAGGTGAAGGGCTAAACACATT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
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| 3UTR CCA 90 bp | ACTGTGTGGCCTGTGTATGTACAGGAGCACTCAGGTGGGCTCACATaGAGATTAGAGGGGAACTTTCAGGAGCTGGCTCTTCCCTCCACC | + |
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Preference number: 1 (lower is better) Translates to: TVWPVYVQEHSGGLT*RLEGNFQELALPST Trigger: GGTGGAGGGAAGAGCCAGCTCCTGAAAGTTCCCCTCTAATCTCCATGTGAGCCCACCTGAGTGCTCCTGTACATACACAGGCCACACAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
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| 3UTR TCA 90 bp | GCTGGATGCCACCAGCCACCAGCCACCAAGCTGAGAGAGAGCCAATaGAGAACTCAGCACTTCACTTCCAAAATACCCAAGTCGTGCCCT | + |
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Preference number: 1 (lower is better) Translates to: AGCHQPPATKLRESQ*RTQHFTSKIPKSCP Trigger: AGGGCACGACTTGGGTATTTTGGAAGTGAAGTGCTGAGTTCTTCATTGGCTCTCTCTCAGCTTGGTGGCTGGTGGCTGGTGGCATCCAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
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| 3UTR TCA 90 bp | CTGAACACAGAGGAGCTGGATGCCACCAGCCACCAGCCACCAAGCTaGGAGAGAGCCAATGAAGAACTCAGCACTTCACTTCCAAAATAC | + |
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Preference number: 1 (lower is better) Translates to: LNTEELDATSHQPPS*ERANEELSTSLPKY Trigger: GTATTTTGGAAGTGAAGTGCTGAGTTCTTCATTGGCTCTCTCTCAGCTTGGTGGCTGGTGGCTGGTGGCATCCAGCTCCTCTGTGTTCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
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| 3UTR CCA 90 bp | ATCCCAGAGACGTGGGCAGGTCCCAGAAACACAATACAGAGGAACTaGAGGGAGAGTTTGAAAAGATCCAGAGGACTGCTCGATGGGAAG | + |
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Preference number: 1 (lower is better) Translates to: IPETWAGPRNTIQRN*RESLKRSRGLLDGK Trigger: CTTCCCATCGAGCAGTCCTCTGGATCTTTTCAAACTCTCCCTCCAGTTCCTCTGTATTGTGTTTCTGGGACCTGCCCACGTCTCTGGGAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
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| 3UTR CCA 90 bp | AGAGGGGAACTTTCAGGAGCTGGCTCTTCCCTCCACCATGGGTTCTaGGGATTGAGGTCAGGTTGTCAGAGTTATACAACACACACCTTT | + |
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Preference number: 1 (lower is better) Translates to: RGELSGAGSSLHHGF*GLRSGCQSYTTHTF Trigger: AAAGGTGTGTGTTGTATAACTCTGACAACCTGACCTCAATCCCCAGAACCCATGGTGGAGGGAAGAGCCAGCTCCTGAAAGTTCCCCTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
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| 3UTR CCA 90 bp | CTAAATAAGGACTGTGTGGCCTGTGTATGTACAGGAGCACTCAGGTaGGCTCACATGGAGATTAGAGGGGAACTTTCAGGAGCTGGCTCT | + |
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Preference number: 1 (lower is better) Translates to: LNKDCVACVCTGALR*AHMEIRGELSGAGS Trigger: AGAGCCAGCTCCTGAAAGTTCCCCTCTAATCTCCATGTGAGCCCACCTGAGTGCTCCTGTACATACACAGGCCACACAGTCCTTATTTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
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| 3UTR TCA 90 bp | AACTTTCAGGAGCTGGCTCTTCCCTCCACCATGGGTTCTGGGGATTaGGGTCAGGTTGTCAGAGTTATACAACACACACCTTTACCTGCT | + |
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Preference number: 1 (lower is better) Translates to: NFQELALPSTMGSGD*GQVVRVIQHTPLPA Trigger: AGCAGGTAAAGGTGTGTGTTGTATAACTCTGACAACCTGACCTCAATCCCCAGAACCCATGGTGGAGGGAAGAGCCAGCTCCTGAAAGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
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| 3UTR TCA 90 bp | TGTGGCTTGGCTGATATTTGCTCAGCAGATATGAAGGCCTGGGTTTaGTGTTGGGCATGGTATAACATGCCTATAATCCCAGCATTCATT | + |
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Preference number: 1 (lower is better) Translates to: CGLADICSADMKAWV*CWAWYNMPIIPAFI Trigger: AATGAATGCTGGGATTATAGGCATGTTATACCATGCCCAACATCAAACCCAGGCCTTCATATCTGCTGAGCAAATATCAGCCAAGCCACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
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| 3UTR TCA 90 bp | CAGAACAGAAAAATAACAATGATCACAAGCTATCGGTTAGCTTGCTaGGAGCACTTCCTTTCACTCTCCCTGCTGACAACGGTGAGATTT | + |
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Preference number: 1 (lower is better) Translates to: QNRKITMITSYRLAC*EHFLSLSLLTTVRF Trigger: AAATCTCACCGTTGTCAGCAGGGAGAGTGAAAGGAAGTGCTCTCAGCAAGCTAACCGATAGCTTGTGATCATTGTTATTTTTCTGTTCTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
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| 3UTR GCA 90 bp | AATCCACTTAATGGCCTATTTTACTCTACCTCCTTGGGTACTCCATaGACATGGTGCAGACATATATGTAGGCAAAAGACGCATACACAC | + |
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Preference number: 1 (lower is better) Translates to: NPLNGLFYSTSLGTP*TWCRHICRQKTHTH Trigger: GTGTGTATGCGTCTTTTGCCTACATATATGTCTGCACCATGTGCATGGAGTACCCAAGGAGGTAGAGTAAAATAGGCCATTAAGTGGATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
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| 3UTR TCA 90 bp | CACCCTAGAATATACATAGTGGGTTCAAGGCCAGTCTGGAATAGATaGGACTCTGCCTCAAAACAACAAGAAGATTTAAGGCTCTGGATT | + |
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Preference number: 1 (lower is better) Translates to: HPRIYIVGSRPVWNR*DSASKQQEDLRLWI Trigger: AATCCAGAGCCTTAAATCTTCTTGTTGTTTTGAGGCAGAGTCTCATCTATTCCAGACTGGCCTTGAACCCACTATGTATATTCTAGGGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
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| 3UTR TCA 90 bp | AAGTTCCAGGTCAGCCAGAGCCACATAGTGAAACCCTCTCAAAAATaGAATAAATTACTGAGGTGTGAGGTGACACATACTTGGCATCTA | + |
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Preference number: 1 (lower is better) Translates to: KFQVSQSHIVKPSQK*NKLLRCEVTHTWHL Trigger: TAGATGCCAAGTATGTGTCACCTCACACCTCAGTAATTTATTTCATTTTTGAGAGGGTTTCACTATGTGGCTCTGGCTGACCTGGAACTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
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| 3UTR CCA 90 bp | AGGGCAATTCTTGAATCACGGATGGTCTTTTTAAAGCCAGTGAACTaGGAGTCAACAATTCCTCATTTGCACGAAATCCAGAATGTGTTT | + |
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Preference number: 1 (lower is better) Translates to: RAILESRMVFLKPVN*ESTIPHLHEIQNVF Trigger: AAACACATTCTGGATTTCGTGCAAATGAGGAATTGTTGACTCCCAGTTCACTGGCTTTAAAAAGACCATCCGTGATTCAAGAATTGCCCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
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| 3UTR-3UTR CCA 90 bp | CTTTCAGGAGCTGGCTCTTCCCTCCACCATGGGTTCTGGGGATTGAGGTCAGGTACTAGCAAGCTAATCTaGCCAGGCTTGCCAGGCTTA | + |
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Preference number: 2 (lower is better) Translates to: LSGAGSSLHHGFWGLRSGTSKLI*PGLPGL Trigger: TAAGCCTGGCAAGCCTGGCCAGATTAGCTTGCTAGT...ACCTGACCTCAATCCCCAGAACCCATGGTGGAGGGAAGAGCCAGCTCCTGAAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
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| 3UTR CAA 90 bp | GTCGCATCACCCTTCACCAGGGCCAGTCAGCTGCTAACAGGTCTTTaGAGGGAGACTTCTGCTAGGGCCATGGATTCTAGATCTTTGCAC | + |
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Preference number: 2 (lower is better) Translates to: VASPFTRASQLLTGL*RETSARAMDSRSLH Trigger: GTGCAAAGATCTAGAATCCATGGCCCTAGCAGAAGTCTCCCTCAAAAGACCTGTTAGCAGCTGACTGGCCCTGGTGAAGGGTGATGCGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
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| 3UTR-3UTR TCA 90 bp | CTTTCAGGAGCTGGCTCTTCCCTCCACCATGGGTTCTGGGGATTGAGGTCAGGTCTGAGAGAGAGCCAATaGAGAACTCAGCACTTCACT | + |
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Preference number: 2 (lower is better) Translates to: LSGAGSSLHHGFWGLRSGLRESQ*RTQHFT Trigger: AGTGAAGTGCTGAGTTCTTCATTGGCTCTCTCTCAG...ACCTGACCTCAATCCCCAGAACCCATGGTGGAGGGAAGAGCCAGCTCCTGAAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
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| 3UTR-3UTR CCA 90 bp | CTTTCAGGAGCTGGCTCTTCCCTCCACCATGGGTTCTGGGGATTGAGGTCAGGTGACAACGGTGAGATTTaGGTCACACACACACTAGCA | + |
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Preference number: 2 (lower is better) Translates to: LSGAGSSLHHGFWGLRSGDNGEI*VTHTLA Trigger: TGCTAGTGTGTGTGTGACCCAAATCTCACCGTTGTC...ACCTGACCTCAATCCCCAGAACCCATGGTGGAGGGAAGAGCCAGCTCCTGAAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
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| 3UTR-3UTR TCA 90 bp | CTTTCAGGAGCTGGCTCTTCCCTCCACCATGGGTTCTGGGGATTGAGGTCAGGTCAGTCTTTGCATTTCTaGGGTTGTCACCTCTCGTAT | + |
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Preference number: 2 (lower is better) Translates to: LSGAGSSLHHGFWGLRSGQSLHF*GCHLSY Trigger: ATACGAGAGGTGACAACCTCAGAAATGCAAAGACTG...ACCTGACCTCAATCCCCAGAACCCATGGTGGAGGGAAGAGCCAGCTCCTGAAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
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| 3UTR-3UTR CCA 90 bp | AAGCTATCGGTTAGCTTGCTGAGAGCACTTCCTTTCACTCTCCCTGCTGACAACGAAGAGCCCCATGGTTaGCCTCTTGTTCCCCTGGTA | + |
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Preference number: 2 (lower is better) Translates to: KLSVSLLRALPFTLPADNEEPHG*PLVPLV Trigger: TACCAGGGGAACAAGAGGCCAACCATGGGGCTCTTC...GTTGTCAGCAGGGAGAGTGAAAGGAAGTGCTCTCAGCAAGCTAACCGATAGCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
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| 3UTR-3UTR GCA 90 bp | GTACTCTCAAGATCACTTCCACAGCAGCCAGGGTACTGTACATGGTACTCTCAAGGTCCAGCAAGAACTTaGAGCACGATCACCTGCCTG | + |
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Preference number: 2 (lower is better) Translates to: VLSRSLPQQPGYCTWYSQGPART*STITCL Trigger: CAGGCAGGTGATCGTGCTGCAAGTTCTTGCTGGACC...TTGAGAGTACCATGTACAGTACCCTGGCTGCTGTGGAAGTGATCTTGAGAGTAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
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| 3UTR-3UTR GCA 90 bp | CTTTCAGGAGCTGGCTCTTCCCTCCACCATGGGTTCTGGGGATTGAGGTCAGGTGTGGGTAACACATTTTaGAGAGTTCGCCAAACAAAG | + |
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Preference number: 2 (lower is better) Translates to: LSGAGSSLHHGFWGLRSGVGNTF*RVRQTK Trigger: CTTTGTTTGGCGAACTCTGCAAAATGTGTTACCCAC...ACCTGACCTCAATCCCCAGAACCCATGGTGGAGGGAAGAGCCAGCTCCTGAAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
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| 3UTR-3UTR TCA 90 bp | AAACCAAAGAGGCCAACTGGTTCTCCCAGTTCAGAGAGCAAATATCACAAGAGCCTCACAGAGCACAGGTaGCACTGGCCTTCACTGATC | + |
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Preference number: 2 (lower is better) Translates to: KPKRPTGSPSSESKYHKSLTEHR*HWPSLI Trigger: GATCAGTGAAGGCCAGTGTCACCTGTGCTCTGTGAG...GCTCTTGTGATATTTGCTCTCTGAACTGGGAGAACCAGTTGGCCTCTTTGGTTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
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| 3UTR-3UTR TCA 90 bp | CTTTCAGGAGCTGGCTCTTCCCTCCACCATGGGTTCTGGGGATTGAGGTCAGGTAATCTTTCAAGAGAATaGGGAAGAAGGACTGTGACA | + |
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Preference number: 2 (lower is better) Translates to: LSGAGSSLHHGFWGLRSGNLSRE*GRRTVT Trigger: TGTCACAGTCCTTCTTCCTCATTCTCTTGAAAGATT...ACCTGACCTCAATCCCCAGAACCCATGGTGGAGGGAAGAGCCAGCTCCTGAAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
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| 3UTR-3UTR GCA 90 bp | TTCCACAGCAGCCAGAGTACTGTACGTGGTACTCTCAAGATCACTTCCACAGCAAAAGGGCCTAAAGTCTaGCCTTCCTTCCCAGACACA | + |
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Preference number: 2 (lower is better) Translates to: FHSSQSTVRGTLKITSTAKGPKV*PSFPDT Trigger: TGTGTCTGGGAAGGAAGGGCAGACTTTAGGCCCTTT...TGCTGTGGAAGTGATCTTGAGAGTACCACGTACAGTACTCTGGCTGCTGTGGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
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| 3UTR-3UTR GCA 90 bp | CGGCCTGAAGAACCTATCCTGAATCCAAACCTATCTGCAGTAGCCTGTTCCTCTACATACCACAGACCTTaGCAACAGCACGTTCAGGCT | + |
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Preference number: 2 (lower is better) Translates to: RPEEPILNPNLSAVACSSTYHRP*QQHVQA Trigger: AGCCTGAACGTGCTGTTGGCAAGGTCTGTGGTATGT...AGAGGAACAGGCTACTGCAGATAGGTTTGGATTCAGGATAGGTTCTTCAGGCCG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
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| 3UTR-3UTR GCA 90 bp | CTTTCAGGAGCTGGCTCTTCCCTCCACCATGGGTTCTGGGGATTGAGGTCAGGTATTCAGCAACACCAATaGTGTTTTAACATGCAAGCC | + |
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Preference number: 2 (lower is better) Translates to: LSGAGSSLHHGFWGLRSGIQQHQ*CFNMQA Trigger: GGCTTGCATGTTAAAACAGCATTGGTGTTGCTGAAT...ACCTGACCTCAATCCCCAGAACCCATGGTGGAGGGAAGAGCCAGCTCCTGAAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
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| 3UTR-3UTR CCA 90 bp | CTTTCAGGAGCTGGCTCTTCCCTCCACCATGGGTTCTGGGGATTGAGGTCAGGTGAATTGAATAGGCTATaGGTAAAGCAATTGAGGGAG | + |
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Preference number: 2 (lower is better) Translates to: LSGAGSSLHHGFWGLRSGELNRL*VKQLRE Trigger: CTCCCTCAATTGCTTTACCCATAGCCTATTCAATTC...ACCTGACCTCAATCCCCAGAACCCATGGTGGAGGGAAGAGCCAGCTCCTGAAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
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| 3UTR-3UTR CCA 90 bp | CTTTCAGGAGCTGGCTCTTCCCTCCACCATGGGTTCTGGGGATTGAGGTCAGGTAAGCAAAGTAAGAGGTaGATTAGAACCCTCACATCT | + |
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Preference number: 2 (lower is better) Translates to: LSGAGSSLHHGFWGLRSGKQSKR*IRTLTS Trigger: AGATGTGAGGGTTCTAATCCACCTCTTACTTTGCTT...ACCTGACCTCAATCCCCAGAACCCATGGTGGAGGGAAGAGCCAGCTCCTGAAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
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| 3UTR-3UTR TCA 90 bp | TTCCACAGCAGCCAGAGTACTGTACGTGGTACTCTCAAGATCACTTCCACAGCAACTCATCGGAAAAGGTaGGACTTCTGCAAAGTGCAC | + |
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Preference number: 2 (lower is better) Translates to: FHSSQSTVRGTLKITSTATHRKR*DFCKVH Trigger: GTGCACTTTGCAGAAGTCTCACCTTTTCCGATGAGT...TGCTGTGGAAGTGATCTTGAGAGTACCACGTACAGTACTCTGGCTGCTGTGGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
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| 3UTR-3UTR TCA 90 bp | GTACTCTCAAGATCACTTCCACAGCAGCCAGGGTACTGTACATGGTACTCTCAAACTGGAGGGAGAGTTTaGAAAGATCCAGAGGACTGC | + |
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Preference number: 2 (lower is better) Translates to: VLSRSLPQQPGYCTWYSQTGGRV*KDPEDC Trigger: GCAGTCCTCTGGATCTTTTCAAACTCTCCCTCCAGT...TTGAGAGTACCATGTACAGTACCCTGGCTGCTGTGGAAGTGATCTTGAGAGTAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
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| 3UTR-3UTR TCA 90 bp | AAGCTATCGGTTAGCTTGCTGAGAGCACTTCCTTTCACTCTCCCTGCTGACAACGGCTTTCTGTTTCTGTaGGGAAAACCTTCTCAGGGT | + |
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Preference number: 2 (lower is better) Translates to: KLSVSLLRALPFTLPADNGFLFL*GKPSQG Trigger: ACCCTGAGAAGGTTTTCCTCACAGAAACAGAAAGCC...GTTGTCAGCAGGGAGAGTGAAAGGAAGTGCTCTCAGCAAGCTAACCGATAGCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
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| 3UTR-3UTR GCA 90 bp | AAGCTATCGGTTAGCTTGCTGAGAGCACTTCCTTTCACTCTCCCTGCTGACAACCACAAGCAACTATGCTaGTTGCTTTTAGAGCAGGGG | + |
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Preference number: 2 (lower is better) Translates to: KLSVSLLRALPFTLPADNHKQLC*LLLEQG Trigger: CCCCTGCTCTAAAAGCAAGCAGCATAGTTGCTTGTG...GTTGTCAGCAGGGAGAGTGAAAGGAAGTGCTCTCAGCAAGCTAACCGATAGCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
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| 3UTR-3UTR GCA 90 bp | AGTCTCAGCATAGTGATTCAGGAAAAGTTCAAAGCCAACTTGAAAAGGATTCAGCACAGAGGAGCTGGATaGCACCAGCCACCAGCCACC | + |
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Preference number: 2 (lower is better) Translates to: SLSIVIQEKFKANLKRIQHRGAG*HQPPAT Trigger: GGTGGCTGGTGGCTGGTGGCATCCAGCTCCTCTGTG...CTGAATCCTTTTCAAGTTGGCTTTGAACTTTTCCTGAATCACTATGCTGAGACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
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| 3UTR-3UTR CCA 90 bp | AAACCAAAGAGGCCAACTGGTTCTCCCAGTTCAGAGAGCAAATATCACAAGAGCCAAATCCCAGAGACGTaGGCAGGTCCCAGAAACACA | + |
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Preference number: 2 (lower is better) Translates to: KPKRPTGSPSSESKYHKSQIPET*AGPRNT Trigger: TGTGTTTCTGGGACCTGCCCACGTCTCTGGGATTTG...GCTCTTGTGATATTTGCTCTCTGAACTGGGAGAACCAGTTGGCCTCTTTGGTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
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| 3UTR-3UTR GCA 90 bp | AAGCTATCGGTTAGCTTGCTGAGAGCACTTCCTTTCACTCTCCCTGCTGACAACGAGACTTCTGCAAAGTaGACTTTGAAGAAGAGGTAC | + |
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Preference number: 2 (lower is better) Translates to: KLSVSLLRALPFTLPADNETSAK*TLKKRY Trigger: GTACCTCTTCTTCAAAGTGCACTTTGCAGAAGTCTC...GTTGTCAGCAGGGAGAGTGAAAGGAAGTGCTCTCAGCAAGCTAACCGATAGCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
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| 3UTR-3UTR GCA 90 bp | AAACCAAAGAGGCCAACTGGTTCTCCCAGTTCAGAGAGCAAATATCACAAGAGCGCACGATCACCTGCCTaGTGTAATTACAATGCTCAG | + |
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Preference number: 2 (lower is better) Translates to: KPKRPTGSPSSESKYHKSARSPA*CNYNAQ Trigger: CTGAGCATTGTAATTACAGCAGGCAGGTGATCGTGC...GCTCTTGTGATATTTGCTCTCTGAACTGGGAGAACCAGTTGGCCTCTTTGGTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
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| 3UTR-3UTR CCA 90 bp | CATGCAGAGTGTGAGGCCCTTCAGCCAACATCAGAGCCCTTGATTTGCAAACAAAAGCTCAGCCAAAGATaGATGCATAGCTATCTTACC | + |
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Preference number: 2 (lower is better) Translates to: HAECEALQPTSEPLICKQKLSQR*MHSYLT Trigger: GGTAAGATAGCTATGCATCCATCTTTGGCTGAGCTT...TTGTTTGCAAATCAAGGGCTCTGATGTTGGCTGAAGGGCCTCACACTCTGCATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
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| 3UTR-3UTR CCA 90 bp | AAGCTATCGGTTAGCTTGCTGAGAGCACTTCCTTTCACTCTCCCTGCTGACAACTCCTATTTAAGACGGTaGGAATCATTTCTCAGCCTC | + |
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Preference number: 2 (lower is better) Translates to: KLSVSLLRALPFTLPADNSYLRR*ESFLSL Trigger: GAGGCTGAGAAATGATTCCCACCGTCTTAAATAGGA...GTTGTCAGCAGGGAGAGTGAAAGGAAGTGCTCTCAGCAAGCTAACCGATAGCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
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| 3UTR-3UTR TCA 90 bp | AGTCTCAGCATAGTGATTCAGGAAAAGTTCAAAGCCAACTTGAAAAGGATTCAGGACACTGGCCTTCACTaGTCACTCCTTTGCCAGAGG | + |
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Preference number: 2 (lower is better) Translates to: SLSIVIQEKFKANLKRIQDTGLH*SLLCQR Trigger: CCTCTGGCAAAGGAGTGATCAGTGAAGGCCAGTGTC...CTGAATCCTTTTCAAGTTGGCTTTGAACTTTTCCTGAATCACTATGCTGAGACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
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| 3UTR-3UTR TCA 90 bp | AAACCAAAGAGGCCAACTGGTTCTCCCAGTTCAGAGAGCAAATATCACAAGAGCAACCCTCCTGGTCTTTaGGAAAATCCTTCCTACCTT | + |
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Preference number: 2 (lower is better) Translates to: KPKRPTGSPSSESKYHKSNPPGL*ENPSYL Trigger: AAGGTAGGAAGGATTTTCTCAAAGACCAGGAGGGTT...GCTCTTGTGATATTTGCTCTCTGAACTGGGAGAACCAGTTGGCCTCTTTGGTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
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| 3UTR-3UTR GCA 90 bp | AAACCAAAGAGGCCAACTGGTTCTCCCAGTTCAGAGAGCAAATATCACAAGAGCCCAGACAACAGTTTCTaGACTTGGCCTGTTAGTTTC | + |
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Preference number: 2 (lower is better) Translates to: KPKRPTGSPSSESKYHKSPDNSF*TWPVSF Trigger: GAAACTAACAGGCCAAGTGCAGAAACTGTTGTCTGG...GCTCTTGTGATATTTGCTCTCTGAACTGGGAGAACCAGTTGGCCTCTTTGGTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
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| 3UTR-3UTR CCA 90 bp | GGTGGGGCAGAAAGTGGAGAACTGAATCAGAGGTTAAGAGCACTGATTGTTATTGAGCAGGGGTGCAACTaGTCATTGACACAAAATGGT | + |
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Preference number: 2 (lower is better) Translates to: GGAESGELNQRLRALIVIEQGCN*SLTQNG Trigger: ACCATTTTGTGTCAATGACCAGTTGCACCCCTGCTC...AATAACAATCAGTGCTCTTAACCTCTGATTCAGTTCTCCACTTTCTGCCCCACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
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| 3UTR-3UTR CCA 90 bp | AAACCAAAGAGGCCAACTGGTTCTCCCAGTTCAGAGAGCAAATATCACAAGAGCAGCACAGAACCCTCCTaGTCTTTGAGAAAATCCTTC | + |
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Preference number: 2 (lower is better) Translates to: KPKRPTGSPSSESKYHKSSTEPS*SLRKSF Trigger: GAAGGATTTTCTCAAAGACCAGGAGGGTTCTGTGCT...GCTCTTGTGATATTTGCTCTCTGAACTGGGAGAACCAGTTGGCCTCTTTGGTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
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| 3UTR CAA 90 bp | GTAACAGAACAGAAAAATAACAATGATCACAAGCTATCGGTTAGCTaGCTGAGAGCACTTCCTTTCACTCTCCCTGCTGACAACGGTGAG | + |
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Preference number: 2 (lower is better) Translates to: VTEQKNNNDHKLSVS*LRALPFTLPADNGE Trigger: CTCACCGTTGTCAGCAGGGAGAGTGAAAGGAAGTGCTCTCAGCAAGCTAACCGATAGCTTGTGATCATTGTTATTTTTCTGTTCTGTTAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
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| 3UTR-3UTR GCA 90 bp | TTCCACAGCAGCCAGAGTACTGTACGTGGTACTCTCAAGATCACTTCCACAGCAATTCAATTCAGTCTTTaGATTTCTGAGGTTGTCACC | + |
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Preference number: 2 (lower is better) Translates to: FHSSQSTVRGTLKITSTAIQFSL*ISEVVT Trigger: GGTGACAACCTCAGAAATGCAAAGACTGAATTGAAT...TGCTGTGGAAGTGATCTTGAGAGTACCACGTACAGTACTCTGGCTGCTGTGGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
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| 3UTR-3UTR GCA 90 bp | AAACCAAAGAGGCCAACTGGTTCTCCCAGTTCAGAGAGCAAATATCACAAGAGCTCACACAAGCAACTATaGTGCTTGCTTTTAGAGCAG | + |
|
Preference number: 2 (lower is better) Translates to: KPKRPTGSPSSESKYHKSSHKQL*CLLLEQ Trigger: CTGCTCTAAAAGCAAGCAGCATAGTTGCTTGTGTGA...GCTCTTGTGATATTTGCTCTCTGAACTGGGAGAACCAGTTGGCCTCTTTGGTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
||
| 3UTR-3UTR TCA 90 bp | GGTGGGGCAGAAAGTGGAGAACTGAATCAGAGGTTAAGAGCACTGATTGTTATTCTAGAGGGCAATTCTTaGATCACGGATGGTCTTTTT | + |
|
Preference number: 2 (lower is better) Translates to: GGAESGELNQRLRALIVILEGNS*ITDGLF Trigger: AAAAAGACCATCCGTGATTCAAGAATTGCCCTCTAG...AATAACAATCAGTGCTCTTAACCTCTGATTCAGTTCTCCACTTTCTGCCCCACC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
||
| 3UTR-3UTR GCA 90 bp | AAACCAAAGAGGCCAACTGGTTCTCCCAGTTCAGAGAGCAAATATCACAAGAGCGATGAATGCAGATGGTaGCAAATTATTCCCCAAACT | + |
|
Preference number: 2 (lower is better) Translates to: KPKRPTGSPSSESKYHKSDECRW*QIIPQT Trigger: AGTTTGGGGAATAATTTGGCACCATCTGCATTCATC...GCTCTTGTGATATTTGCTCTCTGAACTGGGAGAACCAGTTGGCCTCTTTGGTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
||
| 3UTR-3UTR CCA 90 bp | CATGCAGAGTGTGAGGCCCTTCAGCCAACATCAGAGCCCTTGATTTGCAAACAAAATCTCCCAAGAAATTaGGAAGCAATCACATCAATT | + |
|
Preference number: 2 (lower is better) Translates to: HAECEALQPTSEPLICKQNLPRN*EAITSI Trigger: AATTGATGTGATTGCTTCCCAATTTCTTGGGAGATT...TTGTTTGCAAATCAAGGGCTCTGATGTTGGCTGAAGGGCCTCACACTCTGCATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
||
| 3UTR CAA 90 bp | TGCAGATGGTGCCAAATTATTCCCCAAACTGGTAATGATTCTGGATaGAATCATTATCAACCTCCAGGGGCAGCAGTGAATATAAACGTC | + |
|
Preference number: 2 (lower is better) Translates to: CRWCQIIPQTGNDSG*NHYQPPGAAVNINV Trigger: GACGTTTATATTCACTGCTGCCCCTGGAGGTTGATAATGATTCAATCCAGAATCATTACCAGTTTGGGGAATAATTTGGCACCATCTGCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
||
| 3UTR-3UTR TCA 90 bp | GGTGGGGCAGAAAGTGGAGAACTGAATCAGAGGTTAAGAGCACTGATTGTTATTAATATGTGGCTTGGCTaGTATTTGCTCAGCAGATAT | + |
|
Preference number: 2 (lower is better) Translates to: GGAESGELNQRLRALIVINMWLG*YLLSRY Trigger: ATATCTGCTGAGCAAATATCAGCCAAGCCACATATT...AATAACAATCAGTGCTCTTAACCTCTGATTCAGTTCTCCACTTTCTGCCCCACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
||
| 3UTR-3UTR GCA 90 bp | AAACCAAAGAGGCCAACTGGTTCTCCCAGTTCAGAGAGCAAATATCACAAGAGCCAACAATTCCTCATTTaGACGAAATCCAGAATGTGT | + |
|
Preference number: 2 (lower is better) Translates to: KPKRPTGSPSSESKYHKSQQFLI*TKSRMC Trigger: ACACATTCTGGATTTCGTGCAAATGAGGAATTGTTG...GCTCTTGTGATATTTGCTCTCTGAACTGGGAGAACCAGTTGGCCTCTTTGGTTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
||
| 3UTR-3UTR GCA 90 bp | AGTCTCAGCATAGTGATTCAGGAAAAGTTCAAAGCCAACTTGAAAAGGATTCAGAAAATACCCAAGTCGTaGCCTGAATTTTTAGGGCAT | + |
|
Preference number: 2 (lower is better) Translates to: SLSIVIQEKFKANLKRIQKIPKS*PEFLGH Trigger: ATGCCCTAAAAATTCAGGGCACGACTTGGGTATTTT...CTGAATCCTTTTCAAGTTGGCTTTGAACTTTTCCTGAATCACTATGCTGAGACT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
||
| 3UTR-3UTR CCA 90 bp | AGTCTCAGCATAGTGATTCAGGAAAAGTTCAAAGCCAACTTGAAAAGGATTCAGACAATACAGAGGAACTaGAGGGAGAGTTTGAAAAGA | + |
|
Preference number: 2 (lower is better) Translates to: SLSIVIQEKFKANLKRIQTIQRN*RESLKR Trigger: TCTTTTCAAACTCTCCCTCCAGTTCCTCTGTATTGT...CTGAATCCTTTTCAAGTTGGCTTTGAACTTTTCCTGAATCACTATGCTGAGACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
||
| 3UTR-3UTR TCA 90 bp | AGTCTCAGCATAGTGATTCAGGAAAAGTTCAAAGCCAACTTGAAAAGGATTCAGAAGAACTTCTGGGGATaGACTTCTAAACATTCTACA | + |
|
Preference number: 2 (lower is better) Translates to: SLSIVIQEKFKANLKRIQKNFWG*TSKHST Trigger: TGTAGAATGTTTAGAAGTTCATCCCCAGAAGTTCTT...CTGAATCCTTTTCAAGTTGGCTTTGAACTTTTCCTGAATCACTATGCTGAGACT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
||
| 3UTR-3UTR CCA 90 bp | AGTCTCAGCATAGTGATTCAGGAAAAGTTCAAAGCCAACTTGAAAAGGATTCAGTTCAAACTTTACTTCTaGGCCAAAGTCGACATCTAT | + |
|
Preference number: 2 (lower is better) Translates to: SLSIVIQEKFKANLKRIQFKLYF*AKVDIY Trigger: ATAGATGTCGACTTTGGCCCAGAAGTAAAGTTTGAA...CTGAATCCTTTTCAAGTTGGCTTTGAACTTTTCCTGAATCACTATGCTGAGACT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
||
| 3UTR CCA 72 bp | CGGGCAGTGGTGGCGCACGCCTTTAATCCCAGCCCTTaGGAGGCAGAGGCAGGTGGATTTCTAAGTTCGAGG | + |
|
Preference number: 3 (lower is better) Translates to: RAVVAHAFNPSP*EAEAGGFLSSR Trigger: CCTCGAACTTAGAAATCCACCTGCCTCTGCCTCCCAAGGGCTGGGATTAAAGGCGTGCGCCACCACTGCCCG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
||
| 3UTR-3UTR CAA 90 bp | CTTTCAGGAGCTGGCTCTTCCCTCCACCATGGGTTCTGGGGATTGAGGTCAGGTCTAATCTGGCCAGGCTaGCCAGGCTTAAAGCCCACA | + |
|
Preference number: 3 (lower is better) Translates to: LSGAGSSLHHGFWGLRSGLIWPG*PGLKPT Trigger: TGTGGGCTTTAAGCCTGGCAAGCCTGGCCAGATTAG...ACCTGACCTCAATCCCCAGAACCCATGGTGGAGGGAAGAGCCAGCTCCTGAAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
||
| 3UTR CCA 72 bp | GAGGGAGAGTTTGAAAAGATCCAGAGGACTGCTCGATaGGAAGCTGAGCTCTTCGCCTCAGGCACTGCAGGG | + |
|
Preference number: 3 (lower is better) Translates to: EGEFEKIQRTAR*EAELFASGTAG Trigger: CCCTGCAGTGCCTGAGGCGAAGAGCTCAGCTTCCCATCGAGCAGTCCTCTGGATCTTTTCAAACTCTCCCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
||
| 3UTR GCA 72 bp | CCTCCCTCTCAAGGGAACCAGGGAGCCCTATGGGAATaGAGCTTCACCAAACCAAAGAGGCCAACTGGTTCT | + |
|
Preference number: 3 (lower is better) Translates to: PPSQGNQGALWE*SFTKPKRPTGS Trigger: AGAACCAGTTGGCCTCTTTGGTTTGGTGAAGCTGCATTCCCATAGGGCTCCCTGGTTCCCTTGAGAGGGAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
||
| 3UTR CCA 72 bp | ACTGAGCCTCCCTCTCAAGGGAACCAGGGAGCCCTATaGGAATGCAGCTTCACCAAACCAAAGAGGCCAACT | + |
|
Preference number: 3 (lower is better) Translates to: TEPPSQGNQGAL*ECSFTKPKRPT Trigger: AGTTGGCCTCTTTGGTTTGGTGAAGCTGCATTCCCATAGGGCTCCCTGGTTCCCTTGAGAGGGAGGCTCAGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
||
| 3UTR TCA 72 bp | GCAGAGAAAGTCAGTAAGAGCATCCGAGATGAGGGATaGCCTGGACGTGGTAGTCGCATCACCCTTCACCAG | + |
|
Preference number: 3 (lower is better) Translates to: AEKVSKSIRDEG*PGRGSRITLHQ Trigger: CTGGTGAAGGGTGATGCGACTACCACGTCCAGGTCATCCCTCATCTCGGATGCTCTTACTGACTTTCTCTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
||
| 3UTR TCA 72 bp | AGAATGTGTTTAGCCCTTCACCTGGGAACAGCAGGATaGAAGCTGCCTGAACACAGAGGAGCTGGATGCCAC | + |
|
Preference number: 3 (lower is better) Translates to: RMCLALHLGTAG*KLPEHRGAGCH Trigger: GTGGCATCCAGCTCCTCTGTGTTCAGGCAGCTTTCATCCTGCTGTTCCCAGGTGAAGGGCTAAACACATTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
||
| 3UTR TCA 72 bp | GAGCTGGCTCTTCCCTCCACCATGGGTTCTGGGGATTaGGGTCAGGTTGTCAGAGTTATACAACACACACCT | + |
|
Preference number: 3 (lower is better) Translates to: ELALPSTMGSGD*GQVVRVIQHTP Trigger: AGGTGTGTGTTGTATAACTCTGACAACCTGACCTCAATCCCCAGAACCCATGGTGGAGGGAAGAGCCAGCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
||
| 3UTR CCA 72 bp | ACGTGGGCAGGTCCCAGAAACACAATACAGAGGAACTaGAGGGAGAGTTTGAAAAGATCCAGAGGACTGCTC | + |
|
Preference number: 3 (lower is better) Translates to: TWAGPRNTIQRN*RESLKRSRGLL Trigger: GAGCAGTCCTCTGGATCTTTTCAAACTCTCCCTCCAGTTCCTCTGTATTGTGTTTCTGGGACCTGCCCACGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
||
| 3UTR CCA 72 bp | CTTTCAGGAGCTGGCTCTTCCCTCCACCATGGGTTCTaGGGATTGAGGTCAGGTTGTCAGAGTTATACAACA | + |
|
Preference number: 3 (lower is better) Translates to: LSGAGSSLHHGF*GLRSGCQSYTT Trigger: TGTTGTATAACTCTGACAACCTGACCTCAATCCCCAGAACCCATGGTGGAGGGAAGAGCCAGCTCCTGAAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
||
| 3UTR-3UTR CAA 90 bp | AAACCAAAGAGGCCAACTGGTTCTCCCAGTTCAGAGAGCAAATATCACAAGAGCAGGTCCAGCAAGAACTaGCAGCACGATCACCTGCCT | + |
|
Preference number: 3 (lower is better) Translates to: KPKRPTGSPSSESKYHKSRSSKN*QHDHLP Trigger: AGGCAGGTGATCGTGCTGCAAGTTCTTGCTGGACCT...GCTCTTGTGATATTTGCTCTCTGAACTGGGAGAACCAGTTGGCCTCTTTGGTTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
||
| 3UTR-3UTR CAA 90 bp | CTTTCAGGAGCTGGCTCTTCCCTCCACCATGGGTTCTGGGGATTGAGGTCAGGTCCAACATCAGAGCCCTaGATTTGCAAACAAGAAAAA | + |
|
Preference number: 3 (lower is better) Translates to: LSGAGSSLHHGFWGLRSGPTSEP*ICKQEK Trigger: TTTTTCTTGTTTGCAAATCAAGGGCTCTGATGTTGG...ACCTGACCTCAATCCCCAGAACCCATGGTGGAGGGAAGAGCCAGCTCCTGAAAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
||
| 3UTR-3UTR CAA 90 bp | GCAGCAGTGAATATAAACGTCACAAAAATCACTAAGTCCCACTTCCACAGCAGCAAGATTCAAGCAGCCTaGAAAGGCCTACACAGCAGG | + |
|
Preference number: 3 (lower is better) Translates to: AAVNINVTKITKSHFHSSKIQAA*KGLHSR Trigger: CCTGCTGTGTAGGCCTTTCAAGGCTGCTTGAATCTT...GCTGCTGTGGAAGTGGGACTTAGTGATTTTTGTGACGTTTATATTCACTGCTGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
||
| 3UTR TCA 72 bp | ACAAACACACCCCAAGTTCTGCACCAGCCCATTATTTaGGCAGAGAAAGTCAGTAAGAGCATCCGAGATGAG | + |
|
Preference number: 3 (lower is better) Translates to: TNTPQVLHQPII*AEKVSKSIRDE Trigger: CTCATCTCGGATGCTCTTACTGACTTTCTCTGCTCAAATAATGGGCTGGTGCAGAACTTGGGGTGTGTTTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
||
| 3UTR CCA 72 bp | TCAAGATCACTTCCACAGCAGCCAGGGTACTGTACATaGTACTCTCAAGAGCAGATGAATTACCTTTCTGCC | + |
|
Preference number: 3 (lower is better) Translates to: SRSLPQQPGYCT*YSQEQMNYLSA Trigger: GGCAGAAAGGTAATTCATCTGCTCTTGAGAGTACCATGTACAGTACCCTGGCTGCTGTGGAAGTGATCTTGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
||
| 3UTR CCA 72 bp | ATGGGAATGCAGCTTCACCAAACCAAAGAGGCCAACTaGTTCTCCCAGTTCAGAGAGCAAATATCACAAGAG | + |
|
Preference number: 3 (lower is better) Translates to: MGMQLHQTKEAN*FSQFREQISQE Trigger: CTCTTGTGATATTTGCTCTCTGAACTGGGAGAACCAGTTGGCCTCTTTGGTTTGGTGAAGCTGCATTCCCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
||
| 3UTR-3UTR CAA 90 bp | CATGCAGAGTGTGAGGCCCTTCAGCCAACATCAGAGCCCTTGATTTGCAAACAACAATCTCCCAAGAAATaGGGAAGCAATCACATCAAT | + |
|
Preference number: 3 (lower is better) Translates to: HAECEALQPTSEPLICKQQSPKK*GSNHIN Trigger: ATTGATGTGATTGCTTCCCAATTTCTTGGGAGATTG...TTGTTTGCAAATCAAGGGCTCTGATGTTGGCTGAAGGGCCTCACACTCTGCATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
||
| 3UTR GCA 72 bp | CACAAGAGCTCTTTGACACAAACACACCCCAAGTTCTaGACCAGCCCATTATTTGAGCAGAGAAAGTCAGTA | + |
|
Preference number: 3 (lower is better) Translates to: HKSSLTQTHPKF*TSPLFEQRKSV Trigger: TACTGACTTTCTCTGCTCAAATAATGGGCTGGTGCAGAACTTGGGGTGTGTTTGTGTCAAAGAGCTCTTGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
||
| 3UTR-3UTR CAA 90 bp | AAACCAAAGAGGCCAACTGGTTCTCCCAGTTCAGAGAGCAAATATCACAAGAGCGGGTGCAACTGGTCATaGACACAAAATGGTTTTACA | + |
|
Preference number: 3 (lower is better) Translates to: KPKRPTGSPSSESKYHKSGCNWS*TQNGFT Trigger: TGTAAAACCATTTTGTGTCAATGACCAGTTGCACCC...GCTCTTGTGATATTTGCTCTCTGAACTGGGAGAACCAGTTGGCCTCTTTGGTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
||
| 3UTR TCA 72 bp | CCCAAGAAATTGGGAAGCAATCACATCAATTCGGCCTaGAGAACCTATCCTGAATCCAAACCTATCTGCAGT | + |
|
Preference number: 3 (lower is better) Translates to: PKKLGSNHINSA*RTYPESKPICS Trigger: ACTGCAGATAGGTTTGGATTCAGGATAGGTTCTTCAGGCCGAATTGATGTGATTGCTTCCCAATTTCTTGGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
||
| 3UTR TCA 72 bp | AAAGCCCACAGACTGATTTGTGAACTAAGCAAACCATaGATTAGGGGGAATCACCCAAAAAGCTCCTCACAC | + |
|
Preference number: 3 (lower is better) Translates to: KAHRLICELSKP*IRGNHPKSSSH Trigger: GTGTGAGGAGCTTTTTGGGTGATTCCCCCTAATTCATGGTTTGCTTAGTTCACAAATCAGTCTGTGGGCTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
||
| 3UTR TCA 72 bp | AAAATAACAATGATCACAAGCTATCGGTTAGCTTGCTaGGAGCACTTCCTTTCACTCTCCCTGCTGACAACG | + |
|
Preference number: 3 (lower is better) Translates to: KITMITSYRLAC*EHFLSLSLLTT Trigger: CGTTGTCAGCAGGGAGAGTGAAAGGAAGTGCTCTCAGCAAGCTAACCGATAGCTTGTGATCATTGTTATTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
||
| 3UTR TCA 72 bp | GCTGATATTTGCTCAGCAGATATGAAGGCCTGGGTTTaGTGTTGGGCATGGTATAACATGCCTATAATCCCA | + |
|
Preference number: 3 (lower is better) Translates to: ADICSADMKAWV*CWAWYNMPIIP Trigger: TGGGATTATAGGCATGTTATACCATGCCCAACATCAAACCCAGGCCTTCATATCTGCTGAGCAAATATCAGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
||
| 3UTR GCA 72 bp | TTTTACTCTACCTCCTTGGGTACTCCATGCACATGGTaGAGACATATATGTAGGCAAAAGACGCATACACAC | + |
|
Preference number: 3 (lower is better) Translates to: FYSTSLGTPCTW*RHICRQKTHTH Trigger: GTGTGTATGCGTCTTTTGCCTACATATATGTCTGCACCATGTGCATGGAGTACCCAAGGAGGTAGAGTAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
||
| 3UTR GCA 72 bp | AATGGCCTATTTTACTCTACCTCCTTGGGTACTCCATaGACATGGTGCAGACATATATGTAGGCAAAAGACG | + |
|
Preference number: 3 (lower is better) Translates to: NGLFYSTSLGTP*TWCRHICRQKT Trigger: CGTCTTTTGCCTACATATATGTCTGCACCATGTGCATGGAGTACCCAAGGAGGTAGAGTAAAATAGGCCATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
||
| 3UTR TCA 72 bp | GTCAGTTCAGTAAAAGCACAGAACCCTCCTGGTCTTTaGGAAAATCCTTCCTACCTTGTTAGAACACAACTC | + |
|
Preference number: 3 (lower is better) Translates to: VSSVKAQNPPGL*ENPSYLVRTQL Trigger: GAGTTGTGTTCTAACAAGGTAGGAAGGATTTTCTCAAAGACCAGGAGGGTTCTGTGCTTTTACTGAACTGAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
||
| 3UTR CCA 72 bp | CTTGAATCACGGATGGTCTTTTTAAAGCCAGTGAACTaGGAGTCAACAATTCCTCATTTGCACGAAATCCAG | + |
|
Preference number: 3 (lower is better) Translates to: LESRMVFLKPVN*ESTIPHLHEIQ Trigger: CTGGATTTCGTGCAAATGAGGAATTGTTGACTCCCAGTTCACTGGCTTTAAAAAGACCATCCGTGATTCAAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
||
| 3UTR CCA 72 bp | CTATTTTACTCTACCTCCTTGGGTACTCCATGCACATaGTGCAGACATATATGTAGGCAAAAGACGCATACA | + |
|
Preference number: 3 (lower is better) Translates to: LFYSTSLGTPCT*CRHICRQKTHT Trigger: TGTATGCGTCTTTTGCCTACATATATGTCTGCACCATGTGCATGGAGTACCCAAGGAGGTAGAGTAAAATAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
||
| 3UTR CCA 72 bp | ATAAACGTATCTAAATCAACGCACCCAACACACCGCTaGATAGGAAAGGTCAAGGGAAGAAAGCCATTGAAA | + |
|
Preference number: 3 (lower is better) Translates to: INVSKSTHPTHR*IGKVKGRKPLK Trigger: TTTCAATGGCTTTCTTCCCTTGACCTTTCCTATCCAGCGGTGTGTTGGGTGCGTTGATTTAGATACGTTTAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
||
| 3UTR TCA 72 bp | GTCAGCCAGAGCCACATAGTGAAACCCTCTCAAAAATaGAATAAATTACTGAGGTGTGAGGTGACACATACT | + |
|
Preference number: 3 (lower is better) Translates to: VSQSHIVKPSQK*NKLLRCEVTHT Trigger: AGTATGTGTCACCTCACACCTCAGTAATTTATTTCATTTTTGAGAGGGTTTCACTATGTGGCTCTGGCTGAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
||
| 3UTR-3UTR CAA 90 bp | GGTGGGGCAGAAAGTGGAGAACTGAATCAGAGGTTAAGAGCACTGATTGTTATTGGTAATGATTCTGGATaGAATCATTATCAACCTCCA | + |
|
Preference number: 3 (lower is better) Translates to: GGAESGELNQRLRALIVIGNDSG*NHYQPP Trigger: TGGAGGTTGATAATGATTCAATCCAGAATCATTACC...AATAACAATCAGTGCTCTTAACCTCTGATTCAGTTCTCCACTTTCTGCCCCACC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
||
| 3UTR TCA 72 bp | ATATACATAGTGGGTTCAAGGCCAGTCTGGAATAGATaGGACTCTGCCTCAAAACAACAAGAAGATTTAAGG | + |
|
Preference number: 3 (lower is better) Translates to: IYIVGSRPVWNR*DSASKQQEDLR Trigger: CCTTAAATCTTCTTGTTGTTTTGAGGCAGAGTCTCATCTATTCCAGACTGGCCTTGAACCCACTATGTATAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
||
| 3UTR GCA 72 bp | TACATCCCTTCAGGGTTTCTTCTTAAAGATGATGAATaGAGATGGTGCCAAATTATTCCCCAAACTGGTAAT | + |
|
Preference number: 3 (lower is better) Translates to: YIPSGFLLKDDE*RWCQIIPQTGN Trigger: ATTACCAGTTTGGGGAATAATTTGGCACCATCTGCATTCATCATCTTTAAGAAGAAACCCTGAAGGGATGTA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
||
| 3UTR CCA 72 bp | CCTTCAGGGTTTCTTCTTAAAGATGATGAATGCAGATaGTGCCAAATTATTCCCCAAACTGGTAATGATTCT | + |
|
Preference number: 3 (lower is better) Translates to: PSGFLLKDDECR*CQIIPQTGNDS Trigger: AGAATCATTACCAGTTTGGGGAATAATTTGGCACCATCTGCATTCATCATCTTTAAGAAGAAACCCTGAAGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
||
| 3UTR TCA 72 bp | AAAAGGATTCAGACATTACAACCTAGAGAATACCTTTaGAAATATGATCTCATCCAAGGGCATGCTGATCAC | + |
|
Preference number: 3 (lower is better) Translates to: KRIQTLQPREYL*KYDLIQGHADH Trigger: GTGATCAGCATGCCCTTGGATGAGATCATATTTTCAAAGGTATTCTCTAGGTTGTAATGTCTGAATCCTTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
||
| CDS-3UTR CCA 90 bp | CGGCCTGAAGAACCTATCCTGAATCCAAACCTATCTGCAGTAGCCTGTTCCTCTTCCTCTGTGTTGCAATaGGTCTCTGTGGGGCTGCAG | + |
|
Preference number: 4 (lower is better) Translates to: RPEEPILNPNLSAVACSSSSVLQ*VSVGLQ Trigger: CTGCAGCCCCACAGAGACCCATTGCAACACAGAGGA...AGAGGAACAGGCTACTGCAGATAGGTTTGGATTCAGGATAGGTTCTTCAGGCCG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
||
| CDS-3UTR GCA 90 bp | TTCCACAGCAGCCAGAGTACTGTACGTGGTACTCTCAAGATCACTTCCACAGCAAGTAGTCCTCTGTGTTaGAATGGGTCTCTGTGGGGC | + |
|
Preference number: 4 (lower is better) Translates to: FHSSQSTVRGTLKITSTASSPLC*NGSLWG Trigger: GCCCCACAGAGACCCATTGCAACACAGAGGACTACT...TGCTGTGGAAGTGATCTTGAGAGTACCACGTACAGTACTCTGGCTGCTGTGGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
||
| CDS-3UTR CCA 90 bp | AAACCAAAGAGGCCAACTGGTTCTCCCAGTTCAGAGAGCAAATATCACAAGAGCGTGGGGCTGCAGTACTaGAGCCGAGAGGTTTCTTCG | + |
|
Preference number: 4 (lower is better) Translates to: KPKRPTGSPSSESKYHKSVGLQY*SREVSS Trigger: CGAAGAAACCTCTCGGCTCCAGTACTGCAGCCCCAC...GCTCTTGTGATATTTGCTCTCTGAACTGGGAGAACCAGTTGGCCTCTTTGGTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
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| 3UTR CAA 72 bp | TCTCCCAGTTCAGAGAGCAAATATCACAAGAGCTCTTaGACACAAACACACCCCAAGTTCTGCACCAGCCCA | + |
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Preference number: 4 (lower is better) Translates to: SPSSESKYHKSS*TQTHPKFCTSP Trigger: TGGGCTGGTGCAGAACTTGGGGTGTGTTTGTGTCAAAGAGCTCTTGTGATATTTGCTCTCTGAACTGGGAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
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| CDS-3UTR GCA 90 bp | GTACTCTCAAGATCACTTCCACAGCAGCCAGGGTACTGTACATGGTACTCTCAACTTCATCATCTCCATTaGCCACACCAGGATTCTTTC | + |
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Preference number: 4 (lower is better) Translates to: VLSRSLPQQPGYCTWYSQLHHLH*PHQDSF Trigger: GAAAGAATCCTGGTGTGGGCAATGGAGATGATGAAG...TTGAGAGTACCATGTACAGTACCCTGGCTGCTGTGGAAGTGATCTTGAGAGTAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
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| 3UTR CAA 72 bp | CAGAAAAATAACAATGATCACAAGCTATCGGTTAGCTaGCTGAGAGCACTTCCTTTCACTCTCCCTGCTGAC | + |
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Preference number: 4 (lower is better) Translates to: QKNNNDHKLSVS*LRALPFTLPAD Trigger: GTCAGCAGGGAGAGTGAAAGGAAGTGCTCTCAGCAAGCTAACCGATAGCTTGTGATCATTGTTATTTTTCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
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| CDS-3UTR GCA 90 bp | GGTGGGGCAGAAAGTGGAGAACTGAATCAGAGGTTAAGAGCACTGATTGTTATTAGTACTTTGACCTGCTaGATCAATTCAGCTGCTTCA | + |
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Preference number: 4 (lower is better) Translates to: GGAESGELNQRLRALIVISTLTC*INSAAS Trigger: TGAAGCAGCTGAATTGATGCAGCAGGTCAAAGTACT...AATAACAATCAGTGCTCTTAACCTCTGATTCAGTTCTCCACTTTCTGCCCCACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
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| 3UTR CAA 72 bp | TGCCAAATTATTCCCCAAACTGGTAATGATTCTGGATaGAATCATTATCAACCTCCAGGGGCAGCAGTGAAT | + |
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Preference number: 4 (lower is better) Translates to: CQIIPQTGNDSG*NHYQPPGAAVN Trigger: ATTCACTGCTGCCCCTGGAGGTTGATAATGATTCAATCCAGAATCATTACCAGTTTGGGGAATAATTTGGCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
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| CDS-3UTR GCA 90 bp | AGTCTCAGCATAGTGATTCAGGAAAAGTTCAAAGCCAACTTGAAAAGGATTCAGTTCAGTACTTTGACCTaGTGCATCAATTCAGCTGCT | + |
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Preference number: 4 (lower is better) Translates to: SLSIVIQEKFKANLKRIQFSTLT*CINSAA Trigger: AGCAGCTGAATTGATGCAGCAGGTCAAAGTACTGAA...CTGAATCCTTTTCAAGTTGGCTTTGAACTTTTCCTGAATCACTATGCTGAGACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
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| CDS-3UTR CAA 90 bp | TTCGCCTCAGGCACTGCAGGGCCCAGACGCCCTCTAGTCACACAAGCAACTATGGTAAGCTTCAGTACTTaGACCTGCTGCATCAATTCA | + |
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Preference number: 5 (lower is better) Translates to: FASGTAGPRRPLVTQATMVSFST*TCCINS Trigger: TGAATTGATGCAGCAGGTCAAAGTACTGAAGCTTAC...CATAGTTGCTTGTGTGACTAGAGGGCGTCTGGGCCCTGCAGTGCCTGAGGCGAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
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| CDS GCA 72 bp | AGTAGTCCTCTGTGTTGCAATGGGTCTCTGTGGGGCTaGAGTACTGGAGCCGAGAGGTTTCTTCGGTTTACT | + |
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Preference number: 6 (lower is better) Translates to: SSPLCCNGSLWG*STGAERFLRFT Trigger: AGTAAACCGAAGAAACCTCTCGGCTCCAGTACTGCAGCCCCACAGAGACCCATTGCAACACAGAGGACTACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028981.9 |
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