RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MAPKBP1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000033902

Ensembl transcript IDs: ENSMUST00000066058.8, ENSMUST00000229024.2

Found 361 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GTGGATGCTCCGCCCCAGGGAGCTCATCCCTGCAGAAACTTCAAATaGCTTCTAAGAAGAGAAGGCCAGCCCTTCCCGATGTCCCCAGGG +
Preference number: 1 (lower is better)
Translates to: VDAPPQGAHPCRNFK*LLRREGQPFPMSPG
Trigger: CCCTGGGGACATCGGGAAGGGCTGGCCTTCTCTTCTTAGAAGCCATTTGAAGTTTCTGCAGGGATGAGCTCCCTGGGGCGGAGCATCCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR GCA 90 bp AGGACAAATCTGGACATGGGCAGCAATTGCCAGTGGCCTCAGACATaGAGAAGAGGACAAAGTGCCACAGGCCACAAGACCCCACCCATG +
Preference number: 1 (lower is better)
Translates to: RTNLDMGSNCQWPQT*RRGQSATGHKTPPM
Trigger: CATGGGTGGGGTCTTGTGGCCTGTGGCACTTTGTCCTCTTCTGCATGTCTGAGGCCACTGGCAATTGCTGCCCATGTCCAGATTTGTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR GCA 90 bp ATGAGGGCGGCTGGGAAGGCTGCTTTGCCTCTCAACACTGATCACTaGTGTCCACTCCAGACATTCCCACCTTTTCTTGAGTGGAAGCAG +
Preference number: 1 (lower is better)
Translates to: MRAAGKAALPLNTDH*CPLQTFPPFLEWKQ
Trigger: CTGCTTCCACTCAAGAAAAGGTGGGAATGTCTGGAGTGGACAGCAGTGATCAGTGTTGAGAGGCAAAGCAGCCTTCCCAGCCGCCCTCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR CCA 90 bp TATCCCTACCTCTGCCACCTACCTGTCCGGCTATTACTTTTCCAGTaGTCTCTTGCCCAGTGCCTTCATTCCACAATCTCCAGTGTCCAG +
Preference number: 1 (lower is better)
Translates to: YPYLCHLPVRLLLFQ*SLAQCLHSTISSVQ
Trigger: CTGGACACTGGAGATTGTGGAATGAAGGCACTGGGCAAGAGACCACTGGAAAAGTAATAGCCGGACAGGTAGGTGGCAGAGGTAGGGATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR CCA 90 bp CAAAACTGGGATAGGACAAATCTGGACATGGGCAGCAATTGCCAGTaGCCTCAGACATGCAGAAGAGGACAAAGTGCCACAGGCCACAAG +
Preference number: 1 (lower is better)
Translates to: QNWDRTNLDMGSNCQ*PQTCRRGQSATGHK
Trigger: CTTGTGGCCTGTGGCACTTTGTCCTCTTCTGCATGTCTGAGGCCACTGGCAATTGCTGCCCATGTCCAGATTTGTCCTATCCCAGTTTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR TCA 90 bp CTCTCTTGCAGGGAACATGGGATTGGAATGTGGGGGCTCAGTTCCTaGTACCAACTCAAGTTTTCTAATGGCTGGGAATACCCTGGAGGC +
Preference number: 1 (lower is better)
Translates to: LSCREHGIGMWGLSS*YQLKFSNGWEYPGG
Trigger: GCCTCCAGGGTATTCCCAGCCATTAGAAAACTTGAGTTGGTATCAGGAACTGAGCCCCCACATTCCAATCCCATGTTCCCTGCAAGAGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR GCA 90 bp AAATACCACATTACCTTTCATCTCTATCCCAGAGTACCCTGTGGATaGTCCGCCCCAGGGAGCTCATCCCTGCAGAAACTTCAAATGGCT +
Preference number: 1 (lower is better)
Translates to: KYHITFHLYPRVPCG*SAPGSSSLQKLQMA
Trigger: AGCCATTTGAAGTTTCTGCAGGGATGAGCTCCCTGGGGCGGAGCATCCACAGGGTACTCTGGGATAGAGATGAAAGGTAATGTGGTATTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR GCA 90 bp AGAGGAAAGGAGGGCCCAGGCCCAAAGACATACTCACTCCAATTCTaGAACCACCTCACCACTTCTTCCAACATACAGCTTCTCTCTCTT +
Preference number: 1 (lower is better)
Translates to: RGKEGPGPKTYSLQF*NHLTTSSNIQLLSL
Trigger: AAGAGAGAGAAGCTGTATGTTGGAAGAAGTGGTGAGGTGGTTGCAGAATTGGAGTGAGTATGTCTTTGGGCCTGGGCCCTCCTTTCCTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR CCA 90 bp CTTGCCCAGTGCCTTCATTCCACAATCTCCAGTGTCCAGTATTTCTaGGCACTCAATACTGCCTTTGAAAAGAGCCTCCTCCATGAGCCA +
Preference number: 1 (lower is better)
Translates to: LAQCLHSTISSVQYF*ALNTAFEKSLLHEP
Trigger: TGGCTCATGGAGGAGGCTCTTTTCAAAGGCAGTATTGAGTGCCCAGAAATACTGGACACTGGAGATTGTGGAATGAAGGCACTGGGCAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR TCA 90 bp GTGAGGCAAAGTCAGGGAAATAAATTAATAAATACAGGGGCTCCATaGGGGCGGCTGGGAAGGCTGCTTTGCCTCTCAACACTGATCACT +
Preference number: 1 (lower is better)
Translates to: VRQSQGNKLINTGAP*GRLGRLLCLSTLIT
Trigger: AGTGATCAGTGTTGAGAGGCAAAGCAGCCTTCCCAGCCGCCCTCATGGAGCCCCTGTATTTATTAATTTATTTCCCTGACTTTGCCTCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR TCA 90 bp TTTGTGTTATCTAAACCTGGTGAAATGTCACTACTCTGCCTTCCCTaGTGCAGAGGAAAGGAGGGCCCAGGCCCAAAGACATACTCACTC +
Preference number: 1 (lower is better)
Translates to: FVLSKPGEMSLLCLP*CRGKEGPGPKTYSL
Trigger: GAGTGAGTATGTCTTTGGGCCTGGGCCCTCCTTTCCTCTGCATCAGGGAAGGCAGAGTAGTGACATTTCACCAGGTTTAGATAACACAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR GCA 90 bp CAACCACCTCACCACTTCTTCCAACATACAGCTTCTCTCTCTTTTTaGTACTCTCTAACCGTTACCTTAACTCTATCCCTACCTCTGCCA +
Preference number: 1 (lower is better)
Translates to: QPPHHFFQHTASLSF*YSLTVTLTLSLPLP
Trigger: TGGCAGAGGTAGGGATAGAGTTAAGGTAACGGTTAGAGAGTAGCAAAAAGAGAGAGAAGCTGTATGTTGGAAGAAGTGGTGAGGTGGTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR-3UTR GCA 90 bp CTAACCCCCACACTGCCAAGGGGCCCACCTCAAGTGGCTTCGGTTCTTTGGGCTTGTAGACTCAAGACTTaGCCTGCTGTGAGCCCCAGG +
Preference number: 2 (lower is better)
Translates to: LTPTLPRGPPQVASVLWACRLKT*PAVSPR
Trigger: CCTGGGGCTCACAGCAGGGCAAGTCTTGAGTCTACA...AGCCCAAAGAACCGAAGCCACTTGAGGTGGGCCCCTTGGCAGTGTGGGGGTTAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR-3UTR TCA 90 bp GAGAAAGTGGTCCCCAGGGATTCAACAGTCTGCTGGGGACCAGGGATAGAGAACAGACTTGCCCTGCTGTaGGCCCCAGGCTGGGCTTTA +
Preference number: 2 (lower is better)
Translates to: EKVVPRDSTVCWGPGIENRLALL*APGWAL
Trigger: TAAAGCCCAGCCTGGGGCTCACAGCAGGGCAAGTCT...GTTCTCTATCCCTGGTCCCCAGCAGACTGTTGAATCCCTGGGGACCACTTTCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR-3UTR CCA 90 bp GAGAAAGTGGTCCCCAGGGATTCAACAGTCTGCTGGGGACCAGGGATAGAGAACCTCCATGAGGGCGGCTaGGAAGGCTGCTTTGCCTCT +
Preference number: 2 (lower is better)
Translates to: EKVVPRDSTVCWGPGIENLHEGG*EGCFAS
Trigger: AGAGGCAAAGCAGCCTTCCCAGCCGCCCTCATGGAG...GTTCTCTATCCCTGGTCCCCAGCAGACTGTTGAATCCCTGGGGACCACTTTCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR-3UTR CCA 90 bp TACCTCTGCCACCTACCTGTCCGGCTATTACTTTTCCAGTGGTCTCTTGCCCAGCATCTCCGGTCAGCCTaGCTGTGGACACCACAACTC +
Preference number: 2 (lower is better)
Translates to: YLCHLPVRLLLFQWSLAQHLRSA*LWTPQL
Trigger: GAGTTGTGGTGTCCACAGCCAGGCTGACCGGAGATG...CTGGGCAAGAGACCACTGGAAAAGTAATAGCCGGACAGGTAGGTGGCAGAGGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR-3UTR CCA 90 bp CTGGACATGGGCAGCAATTGCCAGTGGCCTCAGACATGCAGAAGAGGACAAAGTACCTCTAAAACCTGGTaGAGGTCAGGGCAGTGGGCC +
Preference number: 2 (lower is better)
Translates to: LDMGSNCQWPQTCRRGQSTSKTW*RSGQWA
Trigger: GGCCCACTGCCCTGACCTCCACCAGGTTTTAGAGGT...ACTTTGTCCTCTTCTGCATGTCTGAGGCCACTGGCAATTGCTGCCCATGTCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR-3UTR GCA 90 bp GCTGGCATAAAGACCTCTAAAACCTGGTGGAGGTCAGGGCAGTGGGCCGACTTCACACTAGGGCTCTCTTaGAGGGAACATGGGATTGGA +
Preference number: 2 (lower is better)
Translates to: AGIKTSKTWWRSGQWADFTLGLS*REHGIG
Trigger: TCCAATCCCATGTTCCCTGCAAGAGAGCCCTAGTGT...GAAGTCGGCCCACTGCCCTGACCTCCACCAGGTTTTAGAGGTCTTTATGCCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR-3UTR GCA 90 bp GCTGGCATAAAGACCTCTAAAACCTGGTGGAGGTCAGGGCAGTGGGCCGACTTCTGGTCTCTTGCCCAGTaGCTTCATTCCACAATCTCC +
Preference number: 2 (lower is better)
Translates to: AGIKTSKTWWRSGQWADFWSLAQ*LHSTIS
Trigger: GGAGATTGTGGAATGAAGGCACTGGGCAAGAGACCA...GAAGTCGGCCCACTGCCCTGACCTCCACCAGGTTTTAGAGGTCTTTATGCCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR-3UTR CCA 90 bp TCCAGTATTTCTGGGCACTCAATACTGCCTTTGAAAAGAGCCTCCTCCATGAGCTCCCAGAGTACCCTGTaGATGCTCCGCCCCAGGGAG +
Preference number: 2 (lower is better)
Translates to: SSISGHSILPLKRASSMSSQSTL*MLRPRE
Trigger: CTCCCTGGGGCGGAGCATCCACAGGGTACTCTGGGA...GCTCATGGAGGAGGCTCTTTTCAAAGGCAGTATTGAGTGCCCAGAAATACTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR-3UTR GCA 90 bp TGTAGGGAGAAAGTGGTCCCCAGGGATTCAACAGTCTGCTGGGGACCAGGGATACTGGGAAGGCTGCTTTaGCTCTCAACACTGATCACT +
Preference number: 2 (lower is better)
Translates to: CREKVVPRDSTVCWGPGILGRLL*LSTLIT
Trigger: AGTGATCAGTGTTGAGAGGCAAAGCAGCCTTCCCAG...TATCCCTGGTCCCCAGCAGACTGTTGAATCCCTGGGGACCACTTTCTCCCTACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR-3UTR GCA 90 bp TTACTTTTCCAGTGGTCTCTTGCCCAGTGCCTTCATTCCACAATCTCCAGTGTCACTCAAGACTTGCCCTaGTGTGAGCCCCAGGCTGGG +
Preference number: 2 (lower is better)
Translates to: LLFQWSLAQCLHSTISSVTQDLP*CEPQAG
Trigger: CCCAGCCTGGGGCTCACAGCAGGGCAAGTCTTGAGT...GACACTGGAGATTGTGGAATGAAGGCACTGGGCAAGAGACCACTGGAAAAGTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR-3UTR GCA 90 bp TTACTTTTCCAGTGGTCTCTTGCCCAGTGCCTTCATTCCACAATCTCCAGTGTCAGAGTACCCTGTGGATaGTCCGCCCCAGGGAGCTCA +
Preference number: 2 (lower is better)
Translates to: LLFQWSLAQCLHSTISSVRVPCG*SAPGSS
Trigger: TGAGCTCCCTGGGGCGGAGCATCCACAGGGTACTCT...GACACTGGAGATTGTGGAATGAAGGCACTGGGCAAGAGACCACTGGAAAAGTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR-3UTR CCA 90 bp GCTGGCATAAAGACCTCTAAAACCTGGTGGAGGTCAGGGCAGTGGGCCGACTTCAAGTTTTCTAATGGCTaGGAATACCCTGGAGGCCAG +
Preference number: 2 (lower is better)
Translates to: AGIKTSKTWWRSGQWADFKFSNG*EYPGGQ
Trigger: CTGGCCTCCAGGGTATTCCCAGCCATTAGAAAACTT...GAAGTCGGCCCACTGCCCTGACCTCCACCAGGTTTTAGAGGTCTTTATGCCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR CAA 90 bp ATTAATAAATACAGGGGCTCCATGAGGGCGGCTGGGAAGGCTGCTTaGCCTCTCAACACTGATCACTGCTGTCCACTCCAGACATTCCCA +
Preference number: 2 (lower is better)
Translates to: INKYRGSMRAAGKAA*PLNTDHCCPLQTFP
Trigger: TGGGAATGTCTGGAGTGGACAGCAGTGATCAGTGTTGAGAGGCAAAGCAGCCTTCCCAGCCGCCCTCATGGAGCCCCTGTATTTATTAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR-3UTR GCA 90 bp TCCAGTATTTCTGGGCACTCAATACTGCCTTTGAAAAGAGCCTCCTCCATGAGCCCAGGCTTTGCTGTCTaGCCAGCAGAGGGGTTTCAC +
Preference number: 2 (lower is better)
Translates to: SSISGHSILPLKRASSMSPGFAV*PAEGFH
Trigger: GTGAAACCCCTCTGCTGGGCAGACAGCAAAGCCTGG...GCTCATGGAGGAGGCTCTTTTCAAAGGCAGTATTGAGTGCCCAGAAATACTGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR-3UTR CCA 90 bp AGACCCCACCCATGCAGGGTAGTGGCGCTTTCTCTAGAAGGGCAGGCTGGCATAGGATACAGTTTGGAATaGAGAGCATTTCTCTTGGGA +
Preference number: 2 (lower is better)
Translates to: RPHPCRVVALSLEGQAGIGYSLE*RAFLLG
Trigger: TCCCAAGAGAAATGCTCTCCATTCCAAACTGTATCC...TATGCCAGCCTGCCCTTCTAGAGAAAGCGCCACTACCCTGCATGGGTGGGGTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR CAA 90 bp CCACAATCTCCAGTGTCCAGTATTTCTGGGCACTCAATACTGCCTTaGAAAAGAGCCTCCTCCATGAGCCAGGTGACCCATAGGCCATCT +
Preference number: 2 (lower is better)
Translates to: PQSPVSSISGHSILP*KRASSMSQVTHRPS
Trigger: AGATGGCCTATGGGTCACCTGGCTCATGGAGGAGGCTCTTTTCAAAGGCAGTATTGAGTGCCCAGAAATACTGGACACTGGAGATTGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR CAA 90 bp CCAAGGGGCCCACCTCAAGTGGCTTCGGTTCTTTGGGCTAGGAGTTaGACTATGCGTGTGGTAGAAAAATGGGAACACATGGTTTGGGTA +
Preference number: 2 (lower is better)
Translates to: PRGPPQVASVLWARS*TMRVVEKWEHMVWV
Trigger: TACCCAAACCATGTGTTCCCATTTTTCTACCACACGCATAGTCAAACTCCTAGCCCAAAGAACCGAAGCCACTTGAGGTGGGCCCCTTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR CAA 90 bp ACCTCTGCCACCTACCTGTCCGGCTATTACTTTTCCAGTGGTCTCTaGCCCAGTGCCTTCATTCCACAATCTCCAGTGTCCAGTATTTCT +
Preference number: 2 (lower is better)
Translates to: TSATYLSGYYFSSGL*PSAFIPQSPVSSIS
Trigger: AGAAATACTGGACACTGGAGATTGTGGAATGAAGGCACTGGGCAAGAGACCACTGGAAAAGTAATAGCCGGACAGGTAGGTGGCAGAGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR-3UTR CCA 90 bp TACCTCTGCCACCTACCTGTCCGGCTATTACTTTTCCAGTGGTCTCTTGCCCAGAGCAGGGATACAGTTTaGAATGGAGAGCATTTCTCT +
Preference number: 2 (lower is better)
Translates to: YLCHLPVRLLLFQWSLAQSRDTV*NGEHFS
Trigger: AGAGAAATGCTCTCCATTCCAAACTGTATCCCTGCT...CTGGGCAAGAGACCACTGGAAAAGTAATAGCCGGACAGGTAGGTGGCAGAGGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR-3UTR CCA 90 bp GCTGGCATAAAGACCTCTAAAACCTGGTGGAGGTCAGGGCAGTGGGCCGACTTCAAAAATGGGAACACATaGTTTGGGTATTCACATGGT +
Preference number: 2 (lower is better)
Translates to: AGIKTSKTWWRSGQWADFKNGNT*FGYSHG
Trigger: ACCATGTGAATACCCAAACCATGTGTTCCCATTTTT...GAAGTCGGCCCACTGCCCTGACCTCCACCAGGTTTTAGAGGTCTTTATGCCAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR-3UTR TCA 90 bp CTTTTTGTGTTTAGTGTACCCATCCCTTTTTGTGTTTCTGGATCAGAATTCCAAAATACAGGGGCTCCATaGGGGCGGCTGGGAAGGCTG +
Preference number: 2 (lower is better)
Translates to: LFVFSVPIPFCVSGSEFQNTGAP*GRLGRL
Trigger: CAGCCTTCCCAGCCGCCCTCATGGAGCCCCTGTATT...TTGGAATTCTGATCCAGAAACACAAAAAGGGATGGGTACACTAAACACAAAAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 22 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR CAA 90 bp TCAACACTGATCACTGCTGTCCACTCCAGACATTCCCACCTTTTCTaGAGTGGAAGCAGGGATACAGTTTGGAATGGAGAGCATTTCTCT +
Preference number: 2 (lower is better)
Translates to: STLITAVHSRHSHLF*SGSRDTVWNGEHFS
Trigger: AGAGAAATGCTCTCCATTCCAAACTGTATCCCTGCTTCCACTCAAGAAAAGGTGGGAATGTCTGGAGTGGACAGCAGTGATCAGTGTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR CAA 90 bp GCAACCACCTCACCACTTCTTCCAACATACAGCTTCTCTCTCTTTTaGCTACTCTCTAACCGTTACCTTAACTCTATCCCTACCTCTGCC +
Preference number: 2 (lower is better)
Translates to: ATTSPLLPTYSFSLF*LLSNRYLNSIPTSA
Trigger: GGCAGAGGTAGGGATAGAGTTAAGGTAACGGTTAGAGAGTAGCAAAAAGAGAGAGAAGCTGTATGTTGGAAGAAGTGGTGAGGTGGTTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR-3UTR CCA 90 bp GTGTTTAGTGTACCCATCCCTTTTTGTGTTTCTGGATCAGAATTCCAATTAATCTGGCTGGGAATACCCTaGAGGCCAGGCAGCTGTCTC +
Preference number: 2 (lower is better)
Translates to: VFSVPIPFCVSGSEFQLIWLGIP*RPGSCL
Trigger: GAGACAGCTGCCTGGCCTCCAGGGTATTCCCAGCCA...GATTAATTGGAATTCTGATCCAGAAACACAAAAAGGGATGGGTACACTAAACAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR-3UTR TCA 90 bp AGGTCTACAGTTGGCTTTAGGACACTAAATACCACATTACCTTTCATCTCTATCCTCACAGCACCAAGATaGTGTAGACTCAAGACTTGC +
Preference number: 2 (lower is better)
Translates to: RSTVGFRTLNTTLPFISILTAPR*CRLKTC
Trigger: GCAAGTCTTGAGTCTACATCATCTTGGTGCTGTGAG...GATAGAGATGAAAGGTAATGTGGTATTTAGTGTCCTAAAGCCAACTGTAGACCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR-3UTR TCA 90 bp CTTTTTGTGTTTAGTGTACCCATCCCTTTTTGTGTTTCTGGATCAGAATTCCAAATTCCCACCTTTTCTTaGGTGGAAGCAGGGATACAG +
Preference number: 2 (lower is better)
Translates to: LFVFSVPIPFCVSGSEFQIPTFS*VEAGIQ
Trigger: CTGTATCCCTGCTTCCACTCAAGAAAAGGTGGGAAT...TTGGAATTCTGATCCAGAAACACAAAAAGGGATGGGTACACTAAACACAAAAAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR TCA 72 bp AGGCAGGCTGCCCTCCTACCCCTCACAGCACCAAGATaGTGTAGACTCAAGACTTGCCCTGCTGTGAGCCCC +
Preference number: 3 (lower is better)
Translates to: RQAALLPLTAPR*CRLKTCPAVSP
Trigger: GGGGCTCACAGCAGGGCAAGTCTTGAGTCTACATCATCTTGGTGCTGTGAGGGGTAGGAGGGCAGCCTGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR-3UTR CAA 90 bp TGTAGGGAGAAAGTGGTCCCCAGGGATTCAACAGTCTGCTGGGGACCAGGGATAAAAGTAGGCCAGGCTTaGCTGTCTGCCCAGCAGAGG +
Preference number: 3 (lower is better)
Translates to: CREKVVPRDSTVCWGPGIKVGQA*LSAQQR
Trigger: CCTCTGCTGGGCAGACAGCAAAGCCTGGCCTACTTT...TATCCCTGGTCCCCAGCAGACTGTTGAATCCCTGGGGACCACTTTCTCCCTACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR TCA 72 bp GAGGGCGGCTGGGAAGGCTGCTTTGCCTCTCAACACTaGTCACTGCTGTCCACTCCAGACATTCCCACCTTT +
Preference number: 3 (lower is better)
Translates to: EGGWEGCFASQH*SLLSTPDIPTF
Trigger: AAAGGTGGGAATGTCTGGAGTGGACAGCAGTGATCAGTGTTGAGAGGCAAAGCAGCCTTCCCAGCCGCCCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR TCA 72 bp CACCAAGATGATGTAGACTCAAGACTTGCCCTGCTGTaGGCCCCAGGCTGGGCTTTAGAGGCAGGAGTCCCA +
Preference number: 3 (lower is better)
Translates to: HQDDVDSRLALL*APGWALEAGVP
Trigger: TGGGACTCCTGCCTCTAAAGCCCAGCCTGGGGCTCACAGCAGGGCAAGTCTTGAGTCTACATCATCTTGGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR CCA 72 bp CCGCCCCAGGGAGCTCATCCCTGCAGAAACTTCAAATaGCTTCTAAGAAGAGAAGGCCAGCCCTTCCCGATG +
Preference number: 3 (lower is better)
Translates to: PPQGAHPCRNFK*LLRREGQPFPM
Trigger: CATCGGGAAGGGCTGGCCTTCTCTTCTTAGAAGCCATTTGAAGTTTCTGCAGGGATGAGCTCCCTGGGGCGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR-3UTR CAA 90 bp CATAGGCCATCTCCGGTCAGCCTGGCTGTGGACACCACAACTCCAGAATTTCAGGCTGGGAAGGCTGCTTaGCCTCTCAACACTGATCAC +
Preference number: 3 (lower is better)
Translates to: HRPSPVSLAVDTTTPEFQAGKAA*PLNTDH
Trigger: GTGATCAGTGTTGAGAGGCAAAGCAGCCTTCCCAGC...CTGAAATTCTGGAGTTGTGGTGTCCACAGCCAGGCTGACCGGAGATGGCCTATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR-3UTR CAA 90 bp CCCTACCTCTGCCACCTACCTGTCCGGCTATTACTTTTCCAGTGGTCTCTTGCCGCAGGGAACATGGGATaGGAATGTGGGGGCTCAGTT +
Preference number: 3 (lower is better)
Translates to: PYLCHLPVRLLLFQWSLAAGNMG*ECGGSV
Trigger: AACTGAGCCCCCACATTCCAATCCCATGTTCCCTGC...GGCAAGAGACCACTGGAAAAGTAATAGCCGGACAGGTAGGTGGCAGAGGTAGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR-3UTR CAA 90 bp GCTGGCATAAAGACCTCTAAAACCTGGTGGAGGTCAGGGCAGTGGGCCGACTTCAACACTAGGGCTCTCTaGCAGGGAACATGGGATTGG +
Preference number: 3 (lower is better)
Translates to: AGIKTSKTWWRSGQWADFNTRAL*QGTWDW
Trigger: CCAATCCCATGTTCCCTGCAAGAGAGCCCTAGTGTT...GAAGTCGGCCCACTGCCCTGACCTCCACCAGGTTTTAGAGGTCTTTATGCCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR GCA 72 bp CTTTGCTGTCTGCCCAGCAGAGGGGTTTCACTGTCCTaGAGCAAAAATCCCACAACTAGCTCCACAAGGGGG +
Preference number: 3 (lower is better)
Translates to: LCCLPSRGVSLS*SKNPTTSSTRG
Trigger: CCCCCTTGTGGAGCTAGTTGTGGGATTTTTGCTGCAGGACAGTGAAACCCCTCTGCTGGGCAGACAGCAAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR CCA 72 bp CCACATTACCTTTCATCTCTATCCCAGAGTACCCTGTaGATGCTCCGCCCCAGGGAGCTCATCCCTGCAGAA +
Preference number: 3 (lower is better)
Translates to: PHYLSSLSQSTL*MLRPRELIPAE
Trigger: TTCTGCAGGGATGAGCTCCCTGGGGCGGAGCATCCACAGGGTACTCTGGGATAGAGATGAAAGGTAATGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR GCA 72 bp ATTACCTTTCATCTCTATCCCAGAGTACCCTGTGGATaGTCCGCCCCAGGGAGCTCATCCCTGCAGAAACTT +
Preference number: 3 (lower is better)
Translates to: ITFHLYPRVPCG*SAPGSSSLQKL
Trigger: AAGTTTCTGCAGGGATGAGCTCCCTGGGGCGGAGCATCCACAGGGTACTCTGGGATAGAGATGAAAGGTAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR CCA 72 bp CTCTGCCACCTACCTGTCCGGCTATTACTTTTCCAGTaGTCTCTTGCCCAGTGCCTTCATTCCACAATCTCC +
Preference number: 3 (lower is better)
Translates to: LCHLPVRLLLFQ*SLAQCLHSTIS
Trigger: GGAGATTGTGGAATGAAGGCACTGGGCAAGAGACCACTGGAAAAGTAATAGCCGGACAGGTAGGTGGCAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR-3UTR CAA 90 bp GAGAAAGTGGTCCCCAGGGATTCAACAGTCTGCTGGGGACCAGGGATAGAGAACCATTCCCACCTTTTCTaGAGTGGAAGCAGGGATACA +
Preference number: 3 (lower is better)
Translates to: EKVVPRDSTVCWGPGIENHSHLF*SGSRDT
Trigger: TGTATCCCTGCTTCCACTCAAGAAAAGGTGGGAATG...GTTCTCTATCCCTGGTCCCCAGCAGACTGTTGAATCCCTGGGGACCACTTTCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR GCA 72 bp CCTACCTGTCCGGCTATTACTTTTCCAGTGGTCTCTTaGCCAGTGCCTTCATTCCACAATCTCCAGTGTCCA +
Preference number: 3 (lower is better)
Translates to: PTCPAITFPVVS*PVPSFHNLQCP
Trigger: TGGACACTGGAGATTGTGGAATGAAGGCACTGGGCAAGAGACCACTGGAAAAGTAATAGCCGGACAGGTAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR GCA 72 bp GAGGGCCCAGGCCCAAAGACATACTCACTCCAATTCTaGAACCACCTCACCACTTCTTCCAACATACAGCTT +
Preference number: 3 (lower is better)
Translates to: EGPGPKTYSLQF*NHLTTSSNIQL
Trigger: AAGCTGTATGTTGGAAGAAGTGGTGAGGTGGTTGCAGAATTGGAGTGAGTATGTCTTTGGGCCTGGGCCCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR CCA 72 bp GATAGGACAAATCTGGACATGGGCAGCAATTGCCAGTaGCCTCAGACATGCAGAAGAGGACAAAGTGCCACA +
Preference number: 3 (lower is better)
Translates to: DRTNLDMGSNCQ*PQTCRRGQSAT
Trigger: TGTGGCACTTTGTCCTCTTCTGCATGTCTGAGGCCACTGGCAATTGCTGCCCATGTCCAGATTTGTCCTATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR CCA 72 bp GGGGCTTTCAAAACTGGGATAGGACAAATCTGGACATaGGCAGCAATTGCCAGTGGCCTCAGACATGCAGAA +
Preference number: 3 (lower is better)
Translates to: GAFKTGIGQIWT*AAIASGLRHAE
Trigger: TTCTGCATGTCTGAGGCCACTGGCAATTGCTGCCCATGTCCAGATTTGTCCTATCCCAGTTTTGAAAGCCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR TCA 72 bp TCACTGCTGTCCACTCCAGACATTCCCACCTTTTCTTaGGTGGAAGCAGGGATACAGTTTGGAATGGAGAGC +
Preference number: 3 (lower is better)
Translates to: SLLSTPDIPTFS*VEAGIQFGMES
Trigger: GCTCTCCATTCCAAACTGTATCCCTGCTTCCACTCAAGAAAAGGTGGGAATGTCTGGAGTGGACAGCAGTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR-3UTR CAA 90 bp TACCTCTGCCACCTACCTGTCCGGCTATTACTTTTCCAGTGGTCTCTTGCCCAGTGTATCCATCCCTTTTaGTGTTTAGTGTACCCATCC +
Preference number: 3 (lower is better)
Translates to: YLCHLPVRLLLFQWSLAQCIHPF*CLVYPS
Trigger: GGATGGGTACACTAAACACAAAAAGGGATGGATACA...CTGGGCAAGAGACCACTGGAAAAGTAATAGCCGGACAGGTAGGTGGCAGAGGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR TCA 72 bp CAATTAATCCAGGCTAGTGACGCTGAGGCAAAAATGTaGGGAAACCAGGTGCATACCAGCCAGGCAAGTGTT +
Preference number: 3 (lower is better)
Translates to: QLIQASDAEAKM*GNQVHTSQASV
Trigger: AACACTTGCCTGGCTGGTATGCACCTGGTTTCCTCACATTTTTGCCTCAGCGTCACTAGCCTGGATTAATTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR TCA 72 bp AGGGAACATGGGATTGGAATGTGGGGGCTCAGTTCCTaGTACCAACTCAAGTTTTCTAATGGCTGGGAATAC +
Preference number: 3 (lower is better)
Translates to: REHGIGMWGLSS*YQLKFSNGWEY
Trigger: GTATTCCCAGCCATTAGAAAACTTGAGTTGGTATCAGGAACTGAGCCCCCACATTCCAATCCCATGTTCCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR CCA 72 bp TGCTGTCCACTCCAGACATTCCCACCTTTTCTTGAGTaGAAGCAGGGATACAGTTTGGAATGGAGAGCATTT +
Preference number: 3 (lower is better)
Translates to: CCPLQTFPPFLE*KQGYSLEWRAF
Trigger: AAATGCTCTCCATTCCAAACTGTATCCCTGCTTCCACTCAAGAAAAGGTGGGAATGTCTGGAGTGGACAGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR CCA 72 bp TGGGCTAGGAGTTTGACTATGCGTGTGGTAGAAAAATaGGAACACATGGTTTGGGTATTCACATGGTTTGGG +
Preference number: 3 (lower is better)
Translates to: WARSLTMRVVEK*EHMVWVFTWFG
Trigger: CCCAAACCATGTGAATACCCAAACCATGTGTTCCCATTTTTCTACCACACGCATAGTCAAACTCCTAGCCCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR TCA 72 bp AACCAGGTGCATACCAGCCAGGCAAGTGTTCTAAAATaGGCACTCAACTGTGCATATGATTTGTGTGTGTGT +
Preference number: 3 (lower is better)
Translates to: NQVHTSQASVLK*ALNCAYDLCVC
Trigger: ACACACACACAAATCATATGCACAGTTGAGTGCTCATTTTAGAACACTTGCCTGGCTGGTATGCACCTGGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR CCA 72 bp AAAATGGGAACACATGGTTTGGGTATTCACATGGTTTaGGTATACTCAACACTCAGGTTGAACCAACAAAGC +
Preference number: 3 (lower is better)
Translates to: KMGTHGLGIHMV*VYSTLRLNQQS
Trigger: GCTTTGTTGGTTCAACCTGAGTGTTGAGTATACCCAAACCATGTGAATACCCAAACCATGTGTTCCCATTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR CCA 72 bp ACTATGCGTGTGGTAGAAAAATGGGAACACATGGTTTaGGTATTCACATGGTTTGGGTATACTCAACACTCA +
Preference number: 3 (lower is better)
Translates to: TMRVVEKWEHMV*VFTWFGYTQHS
Trigger: TGAGTGTTGAGTATACCCAAACCATGTGAATACCCAAACCATGTGTTCCCATTTTTCTACCACACGCATAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CCA 90 bp TGTAGGGAGAAAGTGGTCCCCAGGGATTCAACAGTCTGCTGGGGACCAGGGATACCCAGGGCTGCCACCTaGGCTGGACAGCACCGCCCC +
Preference number: 4 (lower is better)
Translates to: CREKVVPRDSTVCWGPGIPRAAT*AGQHRP
Trigger: GGGGCGGTGCTGTCCAGCCCAGGTGGCAGCCCTGGG...TATCCCTGGTCCCCAGCAGACTGTTGAATCCCTGGGGACCACTTTCTCCCTACA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CCA 90 bp AGACCCCACCCATGCAGGGTAGTGGCGCTTTCTCTAGAAGGGCAGGCTGGCATAACTCAGCTCCACGCCTaGCTGAGCCCAGCGCCCTCT +
Preference number: 4 (lower is better)
Translates to: RPHPCRVVALSLEGQAGITQLHA*LSPAPS
Trigger: AGAGGGCGCTGGGCTCAGCCAGGCGTGGAGCTGAGT...TATGCCAGCCTGCCCTTCTAGAGAAAGCGCCACTACCCTGCATGGGTGGGGTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CCA 90 bp CTAACCCCCACACTGCCAAGGGGCCCACCTCAAGTGGCTTCGGTTCTTTGGGCTACAGCCAGTGAGTCCTaGCTGGGGCCTCGAGGGCTT +
Preference number: 4 (lower is better)
Translates to: LTPTLPRGPPQVASVLWATASES*LGPRGL
Trigger: AAGCCCTCGAGGCCCCAGCCAGGACTCACTGGCTGT...AGCCCAAAGAACCGAAGCCACTTGAGGTGGGCCCCTTGGCAGTGTGGGGGTTAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR TCA 90 bp CCAGGATGTAGGGAGAAAGTGGTCCCCAGGGATTCAACAGTCTGCTGGGGACCAGAAGCCTGCGATCGCTaGACTCGCACAGCAGCCCCG +
Preference number: 4 (lower is better)
Translates to: PGCREKVVPRDSTVCWGPEACDR*TRTAAP
Trigger: CGGGGCTGCTGTGCGAGTTCAGCGATCGCAGGCTTC...TGGTCCCCAGCAGACTGTTGAATCCCTGGGGACCACTTTCTCCCTACATCCTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CCA 90 bp AGACCCCACCCATGCAGGGTAGTGGCGCTTTCTCTAGAAGGGCAGGCTGGCATAGGGCACAGGGGTGGTTaGGTCCAGGATAAGCCTGGC +
Preference number: 4 (lower is better)
Translates to: RPHPCRVVALSLEGQAGIGHRGG*VQDKPG
Trigger: GCCAGGCTTATCCTGGACCCAACCACCCCTGTGCCC...TATGCCAGCCTGCCCTTCTAGAGAAAGCGCCACTACCCTGCATGGGTGGGGTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR TCA 90 bp CTGGACATGGGCAGCAATTGCCAGTGGCCTCAGACATGCAGAAGAGGACAAAGTTGGGGACACAGCCAGTaGGTCCTGGCTGGGGCCTCG +
Preference number: 4 (lower is better)
Translates to: LDMGSNCQWPQTCRRGQSWGHSQ*VLAGAS
Trigger: CGAGGCCCCAGCCAGGACTCACTGGCTGTGTCCCCA...ACTTTGTCCTCTTCTGCATGTCTGAGGCCACTGGCAATTGCTGCCCATGTCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR GCA 90 bp CCAGGATGTAGGGAGAAAGTGGTCCCCAGGGATTCAACAGTCTGCTGGGGACCACGCACGGCAGGCATGTaGCCACTCTCTCCAGTGACC +
Preference number: 4 (lower is better)
Translates to: PGCREKVVPRDSTVCWGPRTAGM*PLSPVT
Trigger: GGTCACTGGAGAGAGTGGGCACATGCCTGCCGTGCG...TGGTCCCCAGCAGACTGTTGAATCCCTGGGGACCACTTTCTCCCTACATCCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR GCA 90 bp CCCTACCTCTGCCACCTACCTGTCCGGCTATTACTTTTCCAGTGGTCTCTTGCCGGGCCCTGTGGACCATaGTTCCCAGGACCAGCTGGG +
Preference number: 4 (lower is better)
Translates to: PYLCHLPVRLLLFQWSLAGPCGP*FPGPAG
Trigger: CCCAGCTGGTCCTGGGAAGCATGGTCCACAGGGCCC...GGCAAGAGACCACTGGAAAAGTAATAGCCGGACAGGTAGGTGGCAGAGGTAGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR GCA 90 bp CTAACCCCCACACTGCCAAGGGGCCCACCTCAAGTGGCTTCGGTTCTTTGGGCTCTACCCCTGGCCTGCTaGTTTCCACTGGGTTACGAG +
Preference number: 4 (lower is better)
Translates to: LTPTLPRGPPQVASVLWALPLAC*FPLGYE
Trigger: CTCGTAACCCAGTGGAAAGCAGCAGGCCAGGGGTAG...AGCCCAAAGAACCGAAGCCACTTGAGGTGGGCCCCTTGGCAGTGTGGGGGTTAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CCA 90 bp GCTGGCATAAAGACCTCTAAAACCTGGTGGAGGTCAGGGCAGTGGGCCGACTTCTTCTGGGGGTGCTCCTaGAGGAGTGGCACCACTGCC +
Preference number: 4 (lower is better)
Translates to: AGIKTSKTWWRSGQWADFFWGCS*RSGTTA
Trigger: GGCAGTGGTGCCACTCCTCCAGGAGCACCCCCAGAA...GAAGTCGGCCCACTGCCCTGACCTCCACCAGGTTTTAGAGGTCTTTATGCCAGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR TCA 90 bp TACCTCTGCCACCTACCTGTCCGGCTATTACTTTTCCAGTGGTCTCTTGCCCAGAGCTCCACGCCTGGCTaGGCCCAGCGCCCTCTTCTT +
Preference number: 4 (lower is better)
Translates to: YLCHLPVRLLLFQWSLAQSSTPG*AQRPLL
Trigger: AAGAAGAGGGCGCTGGGCTCAGCCAGGCGTGGAGCT...CTGGGCAAGAGACCACTGGAAAAGTAATAGCCGGACAGGTAGGTGGCAGAGGTA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR GCA 90 bp GAGAAAGTGGTCCCCAGGGATTCAACAGTCTGCTGGGGACCAGGGATAGAGAACGCTGCCCTGGGTCTCTaGCTCCTGGAAGAGCAGTGG +
Preference number: 4 (lower is better)
Translates to: EKVVPRDSTVCWGPGIENAALGL*LLEEQW
Trigger: CCACTGCTCTTCCAGGAGGCAGAGACCCAGGGCAGC...GTTCTCTATCCCTGGTCCCCAGCAGACTGTTGAATCCCTGGGGACCACTTTCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR GCA 90 bp CATAGGCCATCTCCGGTCAGCCTGGCTGTGGACACCACAACTCCAGAATTTCAGTCAGGGGACAGGGGCTaGAAGCTCTCAGGGCCTTGG +
Preference number: 4 (lower is better)
Translates to: HRPSPVSLAVDTTTPEFQSGDRG*KLSGPW
Trigger: CCAAGGCCCTGAGAGCTTGCAGCCCCTGTCCCCTGA...CTGAAATTCTGGAGTTGTGGTGTCCACAGCCAGGCTGACCGGAGATGGCCTATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CCA 90 bp AGACCCCACCCATGCAGGGTAGTGGCGCTTTCTCTAGAAGGGCAGGCTGGCATAGATCCTAAGCTGCCCTaGGTCTCTGCCTCCTGGAAG +
Preference number: 4 (lower is better)
Translates to: RPHPCRVVALSLEGQAGIDPKLP*VSASWK
Trigger: CTTCCAGGAGGCAGAGACCCAGGGCAGCTTAGGATC...TATGCCAGCCTGCCCTTCTAGAGAAAGCGCCACTACCCTGCATGGGTGGGGTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CCA 90 bp TGTAGGGAGAAAGTGGTCCCCAGGGATTCAACAGTCTGCTGGGGACCAGGGATAGCCAGTTCTGAGTCCTaGCTCAGGGCTACCCCTGGC +
Preference number: 4 (lower is better)
Translates to: CREKVVPRDSTVCWGPGIASSES*LRATPG
Trigger: GCCAGGGGTAGCCCTGAGCCAGGACTCAGAACTGGC...TATCCCTGGTCCCCAGCAGACTGTTGAATCCCTGGGGACCACTTTCTCCCTACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR GCA 90 bp CTAACCCCCACACTGCCAAGGGGCCCACCTCAAGTGGCTTCGGTTCTTTGGGCTCTGAGGATGTTACGGTaGAGGGTAGAGCCATGTACC +
Preference number: 4 (lower is better)
Translates to: LTPTLPRGPPQVASVLWALRMLR*RVEPCT
Trigger: GGTACATGGCTCTACCCTGCACCGTAACATCCTCAG...AGCCCAAAGAACCGAAGCCACTTGAGGTGGGCCCCTTGGCAGTGTGGGGGTTAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR GCA 90 bp GCTGGCATAAAGACCTCTAAAACCTGGTGGAGGTCAGGGCAGTGGGCCGACTTCACTGGAGCATGGTGCTaGTTGGCTCCAGAAGCCCTC +
Preference number: 4 (lower is better)
Translates to: AGIKTSKTWWRSGQWADFTGAWC*LAPEAL
Trigger: GAGGGCTTCTGGAGCCAAGCAGCACCATGCTCCAGT...GAAGTCGGCCCACTGCCCTGACCTCCACCAGGTTTTAGAGGTCTTTATGCCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR GCA 90 bp AGGGGCTCCATGAGGGCGGCTGGGAAGGCTGCTTTGCCTCTCAACACTGATCACCCACTGCCTTTCAGCTaGTCACCAGACACCTGTGAT +
Preference number: 4 (lower is better)
Translates to: RGSMRAAGKAALPLNTDHPLPFS*SPDTCD
Trigger: ATCACAGGTGTCTGGTGAGCAGCTGAAAGGCAGTGG...GTGATCAGTGTTGAGAGGCAAAGCAGCCTTCCCAGCCGCCCTCATGGAGCCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR GCA 90 bp TACCTCTGCCACCTACCTGTCCGGCTATTACTTTTCCAGTGGTCTCTTGCCCAGTGCTCCAACAGGGCCTaGGTCTGCTCAGCCCCCACA +
Preference number: 4 (lower is better)
Translates to: YLCHLPVRLLLFQWSLAQCSNRA*VCSAPT
Trigger: TGTGGGGGCTGAGCAGACGCAGGCCCTGTTGGAGCA...CTGGGCAAGAGACCACTGGAAAAGTAATAGCCGGACAGGTAGGTGGCAGAGGTA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CCA 90 bp TGTAGGGAGAAAGTGGTCCCCAGGGATTCAACAGTCTGCTGGGGACCAGGGATACCAGCATCCAGCACGTaGATCAGACGGTCCCGGCTT +
Preference number: 4 (lower is better)
Translates to: CREKVVPRDSTVCWGPGIPASST*IRRSRL
Trigger: AAGCCGGGACCGTCTGATCCACGTGCTGGATGCTGG...TATCCCTGGTCCCCAGCAGACTGTTGAATCCCTGGGGACCACTTTCTCCCTACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CCA 90 bp CTAACCCCCACACTGCCAAGGGGCCCACCTCAAGTGGCTTCGGTTCTTTGGGCTAAGCTCTCAGGGCCTTaGAGAAGGTTGTTGACTGGC +
Preference number: 4 (lower is better)
Translates to: LTPTLPRGPPQVASVLWAKLSGP*RRLLTG
Trigger: GCCAGTCAACAACCTTCTCCAAGGCCCTGAGAGCTT...AGCCCAAAGAACCGAAGCCACTTGAGGTGGGCCCCTTGGCAGTGTGGGGGTTAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR TCA 90 bp CCAGGATGTAGGGAGAAAGTGGTCCCCAGGGATTCAACAGTCTGCTGGGGACCAAGGTTACCTTGGAGCTaGGGTCCTCTCTCCGGTTTC +
Preference number: 4 (lower is better)
Translates to: PGCREKVVPRDSTVCWGPRLPWS*GPLSGF
Trigger: GAAACCGGAGAGAGGACCTCAGCTCCAAGGTAACCT...TGGTCCCCAGCAGACTGTTGAATCCCTGGGGACCACTTTCTCCCTACATCCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR TCA 90 bp GCTGGCATAAAGACCTCTAAAACCTGGTGGAGGTCAGGGCAGTGGGCCGACTTCCCAGGTACCAGAATTTaGTGTGCCGGTTGCCTGCAG +
Preference number: 4 (lower is better)
Translates to: AGIKTSKTWWRSGQWADFPGTRI*CAGCLQ
Trigger: CTGCAGGCAACCGGCACATCAAATTCTGGTACCTGG...GAAGTCGGCCCACTGCCCTGACCTCCACCAGGTTTTAGAGGTCTTTATGCCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR TCA 90 bp TGTAGGGAGAAAGTGGTCCCCAGGGATTCAACAGTCTGCTGGGGACCAGGGATAATGTCCAGGACAAGGTaGGCCCTGCTAGGCAGAGCT +
Preference number: 4 (lower is better)
Translates to: CREKVVPRDSTVCWGPGIMSRTR*ALLGRA
Trigger: AGCTCTGCCTAGCAGGGCTCACCTTGTCCTGGACAT...TATCCCTGGTCCCCAGCAGACTGTTGAATCCCTGGGGACCACTTTCTCCCTACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR GCA 90 bp CCCTACCTCTGCCACCTACCTGTCCGGCTATTACTTTTCCAGTGGTCTCTTGCCGGAGAGGTTGGTCCTTaGTGCTTGATCCCTCGCTGG +
Preference number: 4 (lower is better)
Translates to: PYLCHLPVRLLLFQWSLAGEVGP*CLIPRW
Trigger: CCAGCGAGGGATCAAGCAGCAAGGACCAACCTCTCC...GGCAAGAGACCACTGGAAAAGTAATAGCCGGACAGGTAGGTGGCAGAGGTAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR GCA 90 bp TGTAGGGAGAAAGTGGTCCCCAGGGATTCAACAGTCTGCTGGGGACCAGGGATAGGCTGGAAAGCCGGCTaGTGCTGTAATCCACAGAGC +
Preference number: 4 (lower is better)
Translates to: CREKVVPRDSTVCWGPGIGWKAG*CCNPQS
Trigger: GCTCTGTGGATTACAGCAGCAGCCGGCTTTCCAGCC...TATCCCTGGTCCCCAGCAGACTGTTGAATCCCTGGGGACCACTTTCTCCCTACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CCA 90 bp CCAGGATGTAGGGAGAAAGTGGTCCCCAGGGATTCAACAGTCTGCTGGGGACCATGCAGTGGGCCACAGTaGTCCTTAGCTCCACCCATT +
Preference number: 4 (lower is better)
Translates to: PGCREKVVPRDSTVCWGPCSGPQ*SLAPPI
Trigger: AATGGGTGGAGCTAAGGACCACTGTGGCCCACTGCA...TGGTCCCCAGCAGACTGTTGAATCCCTGGGGACCACTTTCTCCCTACATCCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CCA 90 bp AGACCCCACCCATGCAGGGTAGTGGCGCTTTCTCTAGAAGGGCAGGCTGGCATACCTTCCCCACTTTCTTaGGGTCCCTCACATCCCAAA +
Preference number: 4 (lower is better)
Translates to: RPHPCRVVALSLEGQAGIPSPLS*GPSHPK
Trigger: TTTGGGATGTGAGGGACCCCAAGAAAGTGGGGAAGG...TATGCCAGCCTGCCCTTCTAGAGAAAGCGCCACTACCCTGCATGGGTGGGGTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CCA 90 bp CCCTACCTCTGCCACCTACCTGTCCGGCTATTACTTTTCCAGTGGTCTCTTGCCCCTCTGGGGAGAGGTTaGTCCTTGCTGCTTGATCCC +
Preference number: 4 (lower is better)
Translates to: PYLCHLPVRLLLFQWSLAPLGRG*SLLLDP
Trigger: GGGATCAAGCAGCAAGGACCAACCTCTCCCCAGAGG...GGCAAGAGACCACTGGAAAAGTAATAGCCGGACAGGTAGGTGGCAGAGGTAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CCA 90 bp TCCGGCTATTACTTTTCCAGTGGTCTCTTGCCCAGTGCCTTCATTCCACAATCTCCAGTGAGTCCTGGCTaGGGCCTCGAGGGCTTGGGG +
Preference number: 4 (lower is better)
Translates to: SGYYFSSGLLPSAFIPQSPVSPG*GLEGLG
Trigger: CCCCAAGCCCTCGAGGCCCCAGCCAGGACTCACTGG...AGATTGTGGAATGAAGGCACTGGGCAAGAGACCACTGGAAAAGTAATAGCCGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CCA 90 bp CCCTACCTCTGCCACCTACCTGTCCGGCTATTACTTTTCCAGTGGTCTCTTGCCTGGCGTACATTCCCCTaGAGCTCTGCCACGAGCTGT +
Preference number: 4 (lower is better)
Translates to: PYLCHLPVRLLLFQWSLAWRTFP*SSATSC
Trigger: ACAGCTCGTGGCAGAGCTCCAGGGGAATGTACGCCA...GGCAAGAGACCACTGGAAAAGTAATAGCCGGACAGGTAGGTGGCAGAGGTAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR TCA 90 bp GCTGGCATAAAGACCTCTAAAACCTGGTGGAGGTCAGGGCAGTGGGCCGACTTCTCCAGGCCCACACGTTaGCAATCATGTCATGCTGGT +
Preference number: 4 (lower is better)
Translates to: AGIKTSKTWWRSGQWADFSRPTR*QSCHAG
Trigger: ACCAGCATGACATGATTGTCAACGTGTGGGCCTGGA...GAAGTCGGCCCACTGCCCTGACCTCCACCAGGTTTTAGAGGTCTTTATGCCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR TCA 90 bp TGTAGGGAGAAAGTGGTCCCCAGGGATTCAACAGTCTGCTGGGGACCAGGGATAGCAGGTTGGAAGGATTaGAAAGGCGCACCGTGCCAT +
Preference number: 4 (lower is better)
Translates to: CREKVVPRDSTVCWGPGIAGWKD*KGAPCH
Trigger: ATGGCACGGTGCGCCTTTTCAATCCTTCCAACCTGC...TATCCCTGGTCCCCAGCAGACTGTTGAATCCCTGGGGACCACTTTCTCCCTACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR TCA 90 bp AGGGGCTCCATGAGGGCGGCTGGGAAGGCTGCTTTGCCTCTCAACACTGATCACGCGGATGGTGTTGTCTaGGGAGCAAGTAATAAAGGA +
Preference number: 4 (lower is better)
Translates to: RGSMRAAGKAALPLNTDHADGVV*GASNKG
Trigger: TCCTTTATTACTTGCTCCTCAGACAACACCATCCGC...GTGATCAGTGTTGAGAGGCAAAGCAGCCTTCCCAGCCGCCCTCATGGAGCCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR GCA 90 bp TGTAGGGAGAAAGTGGTCCCCAGGGATTCAACAGTCTGCTGGGGACCAGGGATACCAGGTCTGAGGAGATaGCATCCACACTTAGGGGCT +
Preference number: 4 (lower is better)
Translates to: CREKVVPRDSTVCWGPGIPGLRR*HPHLGA
Trigger: AGCCCCTAAGTGTGGATGGCATCTCCTCAGACCTGG...TATCCCTGGTCCCCAGCAGACTGTTGAATCCCTGGGGACCACTTTCTCCCTACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR GCA 90 bp GAGAAAGTGGTCCCCAGGGATTCAACAGTCTGCTGGGGACCAGGGATAGAGAACTTGTTGACTGGCAGTTaGTGGGCACAGGGGTGGTTG +
Preference number: 4 (lower is better)
Translates to: EKVVPRDSTVCWGPGIENLLTGS*WAQGWL
Trigger: CAACCACCCCTGTGCCCAGCAACTGCCAGTCAACAA...GTTCTCTATCCCTGGTCCCCAGCAGACTGTTGAATCCCTGGGGACCACTTTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CCA 90 bp GAGAAAGTGGTCCCCAGGGATTCAACAGTCTGCTGGGGACCAGGGATAGAGAACGTGACAGAGATGCAGTaGGCCACAGTGGTCCTTAGC +
Preference number: 4 (lower is better)
Translates to: EKVVPRDSTVCWGPGIENVTEMQ*ATVVLS
Trigger: GCTAAGGACCACTGTGGCCCACTGCATCTCTGTCAC...GTTCTCTATCCCTGGTCCCCAGCAGACTGTTGAATCCCTGGGGACCACTTTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CCA 90 bp CCAGGATGTAGGGAGAAAGTGGTCCCCAGGGATTCAACAGTCTGCTGGGGACCACAAGGCAATGGTGTCTaGGTACCTTGCATTGACCCC +
Preference number: 4 (lower is better)
Translates to: PGCREKVVPRDSTVCWGPQGNGV*VPCIDP
Trigger: GGGGTCAATGCAAGGTACCCAGACACCATTGCCTTG...TGGTCCCCAGCAGACTGTTGAATCCCTGGGGACCACTTTCTCCCTACATCCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CCA 90 bp CTGGACATGGGCAGCAATTGCCAGTGGCCTCAGACATGCAGAAGAGGACAAAGTAGAAGGGGGTACCACTaGAGCATGGTGCTGCTTGGC +
Preference number: 4 (lower is better)
Translates to: LDMGSNCQWPQTCRRGQSRRGYH*SMVLLG
Trigger: GCCAAGCAGCACCATGCTCCAGTGGTACCCCCTTCT...ACTTTGTCCTCTTCTGCATGTCTGAGGCCACTGGCAATTGCTGCCCATGTCCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CCA 90 bp CTAACCCCCACACTGCCAAGGGGCCCACCTCAAGTGGCTTCGGTTCTTTGGGCTAAGGATGGGCAGAGCTaGCAGTTCTTCTTCTTCAGT +
Preference number: 4 (lower is better)
Translates to: LTPTLPRGPPQVASVLWAKDGQS*QFFFFS
Trigger: ACTGAAGAAGAAGAACTGCCAGCTCTGCCCATCCTT...AGCCCAAAGAACCGAAGCCACTTGAGGTGGGCCCCTTGGCAGTGTGGGGGTTAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CCA 90 bp CCCTACCTCTGCCACCTACCTGTCCGGCTATTACTTTTCCAGTGGTCTCTTGCCCGACTCATTTCCCAGTaGGACAGGCTTCGGAGCAAG +
Preference number: 4 (lower is better)
Translates to: PYLCHLPVRLLLFQWSLARLISQ*DRLRSK
Trigger: CTTGCTCCGAAGCCTGTCCCACTGGGAAATGAGTCG...GGCAAGAGACCACTGGAAAAGTAATAGCCGGACAGGTAGGTGGCAGAGGTAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CCA 90 bp CCCTACCTCTGCCACCTACCTGTCCGGCTATTACTTTTCCAGTGGTCTCTTGCCACAGACTGGGCTTTCTaGAGTCCAGCTAAAGGCCGG +
Preference number: 4 (lower is better)
Translates to: PYLCHLPVRLLLFQWSLATDWAF*SPAKGR
Trigger: CCGGCCTTTAGCTGGACTCCAGAAAGCCCAGTCTGT...GGCAAGAGACCACTGGAAAAGTAATAGCCGGACAGGTAGGTGGCAGAGGTAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CCA 90 bp CTAACCCCCACACTGCCAAGGGGCCCACCTCAAGTGGCTTCGGTTCTTTGGGCTAAACTATGCACAGACTaGGCTTTCTGGAGTCCAGCT +
Preference number: 4 (lower is better)
Translates to: LTPTLPRGPPQVASVLWAKLCTD*AFWSPA
Trigger: AGCTGGACTCCAGAAAGCCCAGTCTGTGCATAGTTT...AGCCCAAAGAACCGAAGCCACTTGAGGTGGGCCCCTTGGCAGTGTGGGGGTTAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR TCA 90 bp AGACCCCACCCATGCAGGGTAGTGGCGCTTTCTCTAGAAGGGCAGGCTGGCATATTTTCCTGGAGCTGTTaGGGATGTGGTGCTGTTTGT +
Preference number: 4 (lower is better)
Translates to: RPHPCRVVALSLEGQAGIFSWSC*GCGAVC
Trigger: ACAAACAGCACCACATCCTCAACAGCTCCAGGAAAA...TATGCCAGCCTGCCCTTCTAGAGAAAGCGCCACTACCCTGCATGGGTGGGGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR TCA 90 bp TACCTCTGCCACCTACCTGTCCGGCTATTACTTTTCCAGTGGTCTCTTGCCCAGGCCCACTCTCTCCAGTaGCCAAGTACTTGCCATCAG +
Preference number: 4 (lower is better)
Translates to: YLCHLPVRLLLFQWSLAQAHSLQ*PSTCHQ
Trigger: CTGATGGCAAGTACTTGGTCACTGGAGAGAGTGGGC...CTGGGCAAGAGACCACTGGAAAAGTAATAGCCGGACAGGTAGGTGGCAGAGGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR GCA 90 bp CATAGGCCATCTCCGGTCAGCCTGGCTGTGGACACCACAACTCCAGAATTTCAGGCCACACCATACTTATaGTCCTGTAGCTCTGCCACC +
Preference number: 4 (lower is better)
Translates to: HRPSPVSLAVDTTTPEFQATPYL*SCSSAT
Trigger: GGTGGCAGAGCTACAGGAGCATAAGTATGGTGTGGC...CTGAAATTCTGGAGTTGTGGTGTCCACAGCCAGGCTGACCGGAGATGGCCTATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR GCA 90 bp CCCTACCTCTGCCACCTACCTGTCCGGCTATTACTTTTCCAGTGGTCTCTTGCCGCTTTTCTGAGCCCCTaGTGCCTGGGTACATTCTTC +
Preference number: 4 (lower is better)
Translates to: PYLCHLPVRLLLFQWSLAAFLSP*CLGTFF
Trigger: GAAGAATGTACCCAGGCAGCAGGGGCTCAGAAAAGC...GGCAAGAGACCACTGGAAAAGTAATAGCCGGACAGGTAGGTGGCAGAGGTAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CCA 90 bp GCTGGCATAAAGACCTCTAAAACCTGGTGGAGGTCAGGGCAGTGGGCCGACTTCTCTGTTCCAAGAGCATaGGGTCTAGGTAGGGTACTG +
Preference number: 4 (lower is better)
Translates to: AGIKTSKTWWRSGQWADFSVPRA*GLGRVL
Trigger: CAGTACCCTACCTAGACCCCATGCTCTTGGAACAGA...GAAGTCGGCCCACTGCCCTGACCTCCACCAGGTTTTAGAGGTCTTTATGCCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CCA 90 bp TACCTCTGCCACCTACCTGTCCGGCTATTACTTTTCCAGTGGTCTCTTGCCCAGTGGGTCTCTGCCTCCTaGAAGAGCAGTGGACGTGAT +
Preference number: 4 (lower is better)
Translates to: YLCHLPVRLLLFQWSLAQWVSAS*KSSGRD
Trigger: ATCACGTCCACTGCTCTTCCAGGAGGCAGAGACCCA...CTGGGCAAGAGACCACTGGAAAAGTAATAGCCGGACAGGTAGGTGGCAGAGGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CCA 90 bp CTGGACATGGGCAGCAATTGCCAGTGGCCTCAGACATGCAGAAGAGGACAAAGTTGTGGGCCAGGCCCTTaGATACAGGTGAGAATGTGG +
Preference number: 4 (lower is better)
Translates to: LDMGSNCQWPQTCRRGQSCGPGP*IQVRMW
Trigger: CCACATTCTCACCTGTATCCAAGGGCCTGGCCCACA...ACTTTGTCCTCTTCTGCATGTCTGAGGCCACTGGCAATTGCTGCCCATGTCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR TCA 90 bp GAGAAAGTGGTCCCCAGGGATTCAACAGTCTGCTGGGGACCAGGGATAGAGAACAGTGGCGTTCACCTTTaGGGTCTTACTGTCATCCAG +
Preference number: 4 (lower is better)
Translates to: EKVVPRDSTVCWGPGIENSGVHL*GLTVIQ
Trigger: CTGGATGACAGTAAGACCTCAAAGGTGAACGCCACT...GTTCTCTATCCCTGGTCCCCAGCAGACTGTTGAATCCCTGGGGACCACTTTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR TCA 90 bp TGTAGGGAGAAAGTGGTCCCCAGGGATTCAACAGTCTGCTGGGGACCAGGGATAAGATGTATTCTTGGGTaGCAGAGATGCAGTGGGCCA +
Preference number: 4 (lower is better)
Translates to: CREKVVPRDSTVCWGPGIRCILG*QRCSGP
Trigger: TGGCCCACTGCATCTCTGTCACCCAAGAATACATCT...TATCCCTGGTCCCCAGCAGACTGTTGAATCCCTGGGGACCACTTTCTCCCTACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR TCA 90 bp CCTTCATTCCACAATCTCCAGTGTCCAGTATTTCTGGGCACTCAATACTGCCTTGGAGTGGGGCTGAGATaGGCAGCCACCAGCTTGTGG +
Preference number: 4 (lower is better)
Translates to: PSFHNLQCPVFLGTQYCLGVGLR*AATSLW
Trigger: CCACAAGCTGGTGGCTGCTCATCTCAGCCCCACTCC...AAGGCAGTATTGAGTGCCCAGAAATACTGGACACTGGAGATTGTGGAATGAAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR TCA 90 bp CTGGACATGGGCAGCAATTGCCAGTGGCCTCAGACATGCAGAAGAGGACAAAGTGCCCTTGGATACAGGTaGGAATGTGGTCAGAGTAGG +
Preference number: 4 (lower is better)
Translates to: LDMGSNCQWPQTCRRGQSALGYR*ECGQSR
Trigger: CCTACTCTGACCACATTCTCACCTGTATCCAAGGGC...ACTTTGTCCTCTTCTGCATGTCTGAGGCCACTGGCAATTGCTGCCCATGTCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR TCA 90 bp CTTTGCCTCTCAACACTGATCACTGCTGTCCACTCCAGACATTCCCACCTTTTCACTCAAGGCCAGTTCTaGGTCCTGGCTCAGGGCTAC +
Preference number: 4 (lower is better)
Translates to: LCLSTLITAVHSRHSHLFTQGQF*VLAQGY
Trigger: GTAGCCCTGAGCCAGGACTCAGAACTGGCCTTGAGT...GAAAAGGTGGGAATGTCTGGAGTGGACAGCAGTGATCAGTGTTGAGAGGCAAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CCA 90 bp TTACTTTTCCAGTGGTCTCTTGCCCAGTGCCTTCATTCCACAATCTCCAGTGTCGGTCTTGGCAGCCGATaGCCGTGTACTTCCAGCTGG +
Preference number: 4 (lower is better)
Translates to: LLFQWSLAQCLHSTISSVGLGSR*PCTSSW
Trigger: CCAGCTGGAAGTACACGGCCATCGGCTGCCAAGACC...GACACTGGAGATTGTGGAATGAAGGCACTGGGCAAGAGACCACTGGAAAAGTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CCA 90 bp TGTAGGGAGAAAGTGGTCCCCAGGGATTCAACAGTCTGCTGGGGACCAGGGATATTGCAGCCATTTTCTTaGAGGCCCAGCTGTTGTCCA +
Preference number: 4 (lower is better)
Translates to: CREKVVPRDSTVCWGPGILQPFS*RPSCCP
Trigger: TGGACAACAGCTGGGCCTCCAAGAAAATGGCTGCAA...TATCCCTGGTCCCCAGCAGACTGTTGAATCCCTGGGGACCACTTTCTCCCTACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR GCA 90 bp AACTGGGATAGGACAAATCTGGACATGGGCAGCAATTGCCAGTGGCCTCAGACACTGTTGAGGATGTGGTaGTGTTTGTGCTTCCGGGGA +
Preference number: 4 (lower is better)
Translates to: NWDRTNLDMGSNCQWPQTLLRMW*CLCFRG
Trigger: TCCCCGGAAGCACAAACAGCACCACATCCTCAACAG...TGTCTGAGGCCACTGGCAATTGCTGCCCATGTCCAGATTTGTCCTATCCCAGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR GCA 90 bp AGGGGCTCCATGAGGGCGGCTGGGAAGGCTGCTTTGCCTCTCAACACTGATCACCATCCCAAACATATATaGTGTGGTCGTTGTATACAC +
Preference number: 4 (lower is better)
Translates to: RGSMRAAGKAALPLNTDHHPKHI*CGRCIH
Trigger: GTGTATACAACGACCACAGCATATATGTTTGGGATG...GTGATCAGTGTTGAGAGGCAAAGCAGCCTTCCCAGCCGCCCTCATGGAGCCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR GCA 90 bp TCCAGTATTTCTGGGCACTCAATACTGCCTTTGAAAAGAGCCTCCTCCATGAGCACCACTGGAGCATGGTaGTGCTTGGCTCCAGAAGCC +
Preference number: 4 (lower is better)
Translates to: SSISGHSILPLKRASSMSTTGAW*CLAPEA
Trigger: GGCTTCTGGAGCCAAGCAGCACCATGCTCCAGTGGT...GCTCATGGAGGAGGCTCTTTTCAAAGGCAGTATTGAGTGCCCAGAAATACTGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR GCA 90 bp AACTGGGATAGGACAAATCTGGACATGGGCAGCAATTGCCAGTGGCCTCAGACACTCCATGGTCTCTTGTaGCCGACTCATTTCCCAGTG +
Preference number: 4 (lower is better)
Translates to: NWDRTNLDMGSNCQWPQTLHGLL*PTHFPV
Trigger: CACTGGGAAATGAGTCGGGCACAAGAGACCATGGAG...TGTCTGAGGCCACTGGCAATTGCTGCCCATGTCCAGATTTGTCCTATCCCAGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR GCA 90 bp TCCAGTATTTCTGGGCACTCAATACTGCCTTTGAAAAGAGCCTCCTCCATGAGCAGCTTGAGGTTCAGTTaGCAGGCCCGGATTCTCGCC +
Preference number: 4 (lower is better)
Translates to: SSISGHSILPLKRASSMSSLRFS*QARILA
Trigger: GGCGAGAATCCGGGCCTGGCAACTGAACCTCAAGCT...GCTCATGGAGGAGGCTCTTTTCAAAGGCAGTATTGAGTGCCCAGAAATACTGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CCA 90 bp AGGGGCTCCATGAGGGCGGCTGGGAAGGCTGCTTTGCCTCTCAACACTGATCACGACTGGATACTTTGTTaGAGGCCACTACAATGTTTT +
Preference number: 4 (lower is better)
Translates to: RGSMRAAGKAALPLNTDHDWILC*RPLQCF
Trigger: AAAACATTGTAGTGGCCTCCAACAAAGTATCCAGTC...GTGATCAGTGTTGAGAGGCAAAGCAGCCTTCCCAGCCGCCCTCATGGAGCCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CCA 90 bp TCCAGTATTTCTGGGCACTCAATACTGCCTTTGAAAAGAGCCTCCTCCATGAGCAGTGGCCAAACATGGTaGCCACACACTCGCCTGAGG +
Preference number: 4 (lower is better)
Translates to: SSISGHSILPLKRASSMSSGQTW*PHTRLR
Trigger: CCTCAGGCGAGTGTGTGGCCACCATGTTTGGCCACT...GCTCATGGAGGAGGCTCTTTTCAAAGGCAGTATTGAGTGCCCAGAAATACTGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CCA 90 bp GCTGGCATAAAGACCTCTAAAACCTGGTGGAGGTCAGGGCAGTGGGCCGACTTCTCTTGTGACAACAATTaGATAATGTGGGGGCAGGAG +
Preference number: 4 (lower is better)
Translates to: AGIKTSKTWWRSGQWADFSCDNN*IMWGQE
Trigger: CTCCTGCCCCCACATTATCCAATTGTTGTCACAAGA...GAAGTCGGCCCACTGCCCTGACCTCCACCAGGTTTTAGAGGTCTTTATGCCAGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CCA 90 bp CATAGGCCATCTCCGGTCAGCCTGGCTGTGGACACCACAACTCCAGAATTTCAGTGTTCTGTTTCATTGTaGGCCAGGCCCTTGGATACA +
Preference number: 4 (lower is better)
Translates to: HRPSPVSLAVDTTTPEFQCSVSL*ARPLDT
Trigger: TGTATCCAAGGGCCTGGCCCACAATGAAACAGAACA...CTGAAATTCTGGAGTTGTGGTGTCCACAGCCAGGCTGACCGGAGATGGCCTATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR TCA 90 bp TCCAGTATTTCTGGGCACTCAATACTGCCTTTGAAAAGAGCCTCCTCCATGAGCCTGGGTACCTTGCATTaGCCCCTCCAGAAAAGAGGC +
Preference number: 4 (lower is better)
Translates to: SSISGHSILPLKRASSMSLGTLH*PLQKRG
Trigger: GCCTCTTTTCTGGAGGGGTCAATGCAAGGTACCCAG...GCTCATGGAGGAGGCTCTTTTCAAAGGCAGTATTGAGTGCCCAGAAATACTGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR TCA 90 bp TACCTCTGCCACCTACCTGTCCGGCTATTACTTTTCCAGTGGTCTCTTGCCCAGCCCCTGACACAGAGATaGGATGTTTGCAATCGTTAC +
Preference number: 4 (lower is better)
Translates to: YLCHLPVRLLLFQWSLAQPLTQR*DVCNRY
Trigger: GTAACGATTGCAAACATCTCATCTCTGTGTCAGGGG...CTGGGCAAGAGACCACTGGAAAAGTAATAGCCGGACAGGTAGGTGGCAGAGGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR TCA 90 bp TCCAGTATTTCTGGGCACTCAATACTGCCTTTGAAAAGAGCCTCCTCCATGAGCAGCGCTGCCTCATGCTaGTGGTCATCTCAGAGCTCA +
Preference number: 4 (lower is better)
Translates to: SSISGHSILPLKRASSMSSAASC*WSSQSS
Trigger: TGAGCTCTGAGATGACCATCAGCATGAGGCAGCGCT...GCTCATGGAGGAGGCTCTTTTCAAAGGCAGTATTGAGTGCCCAGAAATACTGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR TCA 90 bp TCCAGTATTTCTGGGCACTCAATACTGCCTTTGAAAAGAGCCTCCTCCATGAGCATAGGGATGGTTCCCTaGGTGGGGAGGTCTGCACTT +
Preference number: 4 (lower is better)
Translates to: SSISGHSILPLKRASSMSIGMVP*VGRSAL
Trigger: AAGTGCAGACCTCCCCACTCAGGGAACCATCCCTAT...GCTCATGGAGGAGGCTCTTTTCAAAGGCAGTATTGAGTGCCCAGAAATACTGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR GCA 90 bp GAGAAAGTGGTCCCCAGGGATTCAACAGTCTGCTGGGGACCAGGGATAGAGAACGTGATGGAAGATGAATaGTCATCCAGTGTCTGCTGT +
Preference number: 4 (lower is better)
Translates to: EKVVPRDSTVCWGPGIENVMEDE*SSSVCC
Trigger: ACAGCAGACACTGGATGAGCATTCATCTTCCATCAC...GTTCTCTATCCCTGGTCCCCAGCAGACTGTTGAATCCCTGGGGACCACTTTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR GCA 90 bp CCAGGATGTAGGGAGAAAGTGGTCCCCAGGGATTCAACAGTCTGCTGGGGACCATTCTCCAGACTTCTGTaGAGTTCGGAAGTAAATGCT +
Preference number: 4 (lower is better)
Translates to: PGCREKVVPRDSTVCWGPFSRLL*SSEVNA
Trigger: AGCATTTACTTCCGAACTGCACAGAAGTCTGGAGAA...TGGTCCCCAGCAGACTGTTGAATCCCTGGGGACCACTTTCTCCCTACATCCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR GCA 90 bp CCAGGATGTAGGGAGAAAGTGGTCCCCAGGGATTCAACAGTCTGCTGGGGACCAGCCAGAGTCTCAAAGTaGTGTTTTAGAAACTGTTCC +
Preference number: 4 (lower is better)
Translates to: PGCREKVVPRDSTVCWGPARVSK*CFRNCS
Trigger: GGAACAGTTTCTAAAACAGCACTTTGAGACTCTGGC...TGGTCCCCAGCAGACTGTTGAATCCCTGGGGACCACTTTCTCCCTACATCCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CCA 90 bp TTACTTTTCCAGTGGTCTCTTGCCCAGTGCCTTCATTCCACAATCTCCAGTGTCTGTAGCTCTGCCACCTaGCTACGTTCAGCCACATCC +
Preference number: 4 (lower is better)
Translates to: LLFQWSLAQCLHSTISSVCSSAT*LRSATS
Trigger: GGATGTGGCTGAACGTAGCCAGGTGGCAGAGCTACA...GACACTGGAGATTGTGGAATGAAGGCACTGGGCAAGAGACCACTGGAAAAGTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CCA 90 bp TGGCTGTGGACACCACAACTCCAGAATTTCAGTCTAGTGTATCCATCCCTTTTTGAGCATGGTGCTGCTTaGCTCCAGAAGCCCTCTGGG +
Preference number: 4 (lower is better)
Translates to: WLWTPQLQNFSLVYPSLFEHGAA*LQKPSG
Trigger: CCCAGAGGGCTTCTGGAGCCAAGCAGCACCATGCTC...AAAAAGGGATGGATACACTAGACTGAAATTCTGGAGTTGTGGTGTCCACAGCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CCA 90 bp TTACTTTTCCAGTGGTCTCTTGCCCAGTGCCTTCATTCCACAATCTCCAGTGTCGAGAAGGTTGTTGACTaGCAGTTGCTGGGCACAGGG +
Preference number: 4 (lower is better)
Translates to: LLFQWSLAQCLHSTISSVEKVVD*QLLGTG
Trigger: CCCTGTGCCCAGCAACTGCCAGTCAACAACCTTCTC...GACACTGGAGATTGTGGAATGAAGGCACTGGGCAAGAGACCACTGGAAAAGTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR CAA 72 bp CCAGTGTCCAGTATTTCTGGGCACTCAATACTGCCTTaGAAAAGAGCCTCCTCCATGAGCCAGGTGACCCAT +
Preference number: 4 (lower is better)
Translates to: PVSSISGHSILP*KRASSMSQVTH
Trigger: ATGGGTCACCTGGCTCATGGAGGAGGCTCTTTTCAAAGGCAGTATTGAGTGCCCAGAAATACTGGACACTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR TCA 90 bp TCCGGCTATTACTTTTCCAGTGGTCTCTTGCCCAGTGCCTTCATTCCACAATCTCACAGGCCACATCAGTaGACAGGTTGTTCCTCAGCT +
Preference number: 4 (lower is better)
Translates to: SGYYFSSGLLPSAFIPQSHRPHQ*TGCSSA
Trigger: AGCTGAGGAACAACCTGTTCACTGATGTGGCCTGTG...AGATTGTGGAATGAAGGCACTGGGCAAGAGACCACTGGAAAAGTAATAGCCGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR TCA 90 bp CCTTCATTCCACAATCTCCAGTGTCCAGTATTTCTGGGCACTCAATACTGCCTTCAGACACAGGAGGAGTaGTACAGAGCGGAGTACACC +
Preference number: 4 (lower is better)
Translates to: PSFHNLQCPVFLGTQYCLQTQEE*YRAEYT
Trigger: GGTGTACTCCGCTCTGTATCACTCCTCCTGTGTCTG...AAGGCAGTATTGAGTGCCCAGAAATACTGGACACTGGAGATTGTGGAATGAAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR TCA 90 bp TTACTTTTCCAGTGGTCTCTTGCCCAGTGCCTTCATTCCACAATCTCCAGTGTCCTCCTTGTCACTGTCTaGGGAAAGAGCTGGTCCAGA +
Preference number: 4 (lower is better)
Translates to: LLFQWSLAQCLHSTISSVLLVTV*GKSWSR
Trigger: TCTGGACCAGCTCTTTCCTCAGACAGTGACAAGGAG...GACACTGGAGATTGTGGAATGAAGGCACTGGGCAAGAGACCACTGGAAAAGTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR TCA 90 bp CCTTCATTCCACAATCTCCAGTGTCCAGTATTTCTGGGCACTCAATACTGCCTTATTCTGACTGACACATaGCAGCTCAGGGCCCTGTGG +
Preference number: 4 (lower is better)
Translates to: PSFHNLQCPVFLGTQYCLILTDT*QLRALW
Trigger: CCACAGGGCCCTGAGCTGTCATGTGTCAGTCAGAAT...AAGGCAGTATTGAGTGCCCAGAAATACTGGACACTGGAGATTGTGGAATGAAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR TCA 90 bp CCTTCATTCCACAATCTCCAGTGTCCAGTATTTCTGGGCACTCAATACTGCCTTTGGCTCTTCCAGGTCTaGGGAGATGCCATCCACACT +
Preference number: 4 (lower is better)
Translates to: PSFHNLQCPVFLGTQYCLWLFQV*GDAIHT
Trigger: AGTGTGGATGGCATCTCCTCAGACCTGGAAGAGCCA...AAGGCAGTATTGAGTGCCCAGAAATACTGGACACTGGAGATTGTGGAATGAAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR GCA 90 bp CACTCCAGACATTCCCACCTTTTCTTGAGTGGAAGCAGGGATACAGTTTGGAATGCACTGTCAGGACTGTaGTTTTCTGAGCCCCTGCTG +
Preference number: 4 (lower is better)
Translates to: HSRHSHLFLSGSRDTVWNALSGL*FSEPLL
Trigger: CAGCAGGGGCTCAGAAAAGCACAGTCCTGACAGTGC...ATTCCAAACTGTATCCCTGCTTCCACTCAAGAAAAGGTGGGAATGTCTGGAGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CCA 90 bp TCCGGCTATTACTTTTCCAGTGGTCTCTTGCCCAGTGCCTTCATTCCACAATCTGAGCTGTTGAGGATGTaGTGCTGTTTGTGCTTCCGG +
Preference number: 4 (lower is better)
Translates to: SGYYFSSGLLPSAFIPQSELLRM*CCLCFR
Trigger: CCGGAAGCACAAACAGCACCACATCCTCAACAGCTC...AGATTGTGGAATGAAGGCACTGGGCAAGAGACCACTGGAAAAGTAATAGCCGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CCA 90 bp TTACTTTTCCAGTGGTCTCTTGCCCAGTGCCTTCATTCCACAATCTCCAGTGTCCTGGAGCAGTCCCATTaGCCAGAGTCTCAAAGTGCT +
Preference number: 4 (lower is better)
Translates to: LLFQWSLAQCLHSTISSVLEQSH*PESQSA
Trigger: AGCACTTTGAGACTCTGGCCAATGGGACTGCTCCAG...GACACTGGAGATTGTGGAATGAAGGCACTGGGCAAGAGACCACTGGAAAAGTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR TCA 90 bp TGGCTGTGGACACCACAACTCCAGAATTTCAGTCTAGTGTATCCATCCCTTTTTGCCGGTTGCCTGCAGTaGCAAAGTAGCTGCAGTCTT +
Preference number: 4 (lower is better)
Translates to: WLWTPQLQNFSLVYPSLFAGCLQ*QSSCSL
Trigger: AAGACTGCAGCTACTTTGTCACTGCAGGCAACCGGC...AAAAAGGGATGGATACACTAGACTGAAATTCTGGAGTTGTGGTGTCCACAGCCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR TCA 90 bp CACTCCAGACATTCCCACCTTTTCTTGAGTGGAAGCAGGGATACAGTTTGGAATGGCCACACACTCGCCTaGGGAGAAGTCAAAAATGGA +
Preference number: 4 (lower is better)
Translates to: HSRHSHLFLSGSRDTVWNGHTLA*GEVKNG
Trigger: TCCATTTTTGACTTCTCCTCAGGCGAGTGTGTGGCC...ATTCCAAACTGTATCCCTGCTTCCACTCAAGAAAAGGTGGGAATGTCTGGAGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR TCA 90 bp CACTCCAGACATTCCCACCTTTTCTTGAGTGGAAGCAGGGATACAGTTTGGAATGGGGCCCTTTCATTCTaGCTGACACATGACAGCTCA +
Preference number: 4 (lower is better)
Translates to: HSRHSHLFLSGSRDTVWNGALSF*LTHDSS
Trigger: TGAGCTGTCATGTGTCAGTCAGAATGAAAGGGCCCC...ATTCCAAACTGTATCCCTGCTTCCACTCAAGAAAAGGTGGGAATGTCTGGAGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR TCA 90 bp CTTTGCCTCTCAACACTGATCACTGCTGTCCACTCCAGACATTCCCACCTTTTCGCAGAGCTAGTTTGTTaGATGGTGAGATTCGGATCG +
Preference number: 4 (lower is better)
Translates to: LCLSTLITAVHSRHSHLFAELVC*MVRFGS
Trigger: CGATCCGAATCTCACCATTCAACAAACTAGCTCTGC...GAAAAGGTGGGAATGTCTGGAGTGGACAGCAGTGATCAGTGTTGAGAGGCAAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR GCA 90 bp TTACTTTTCCAGTGGTCTCTTGCCCAGTGCCTTCATTCCACAATCTCCAGTGTCATGTGGTGCTGTTTGTaGTTCCGGGGATTGAAGAGG +
Preference number: 4 (lower is better)
Translates to: LLFQWSLAQCLHSTISSVMWCCL*FRGLKR
Trigger: CCTCTTCAATCCCCGGAAGCACAAACAGCACCACAT...GACACTGGAGATTGTGGAATGAAGGCACTGGGCAAGAGACCACTGGAAAAGTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR GCA 90 bp TCCGGCTATTACTTTTCCAGTGGTCTCTTGCCCAGTGCCTTCATTCCACAATCTCTGATCATTCGCACTTaGCCATCACTGGCTGCAAAC +
Preference number: 4 (lower is better)
Translates to: SGYYFSSGLLPSAFIPQSLIIRT*PSLAAN
Trigger: GTTTGCAGCCAGTGATGGGCAAGTGCGAATGATCAG...AGATTGTGGAATGAAGGCACTGGGCAAGAGACCACTGGAAAAGTAATAGCCGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR GCA 90 bp CACTCCAGACATTCCCACCTTTTCTTGAGTGGAAGCAGGGATACAGTTTGGAATTGGAAAGCCGGCTGCTaGTGTAATCCACAGAGCATG +
Preference number: 4 (lower is better)
Translates to: HSRHSHLFLSGSRDTVWNWKAGC*CNPQSM
Trigger: CATGCTCTGTGGATTACAGCAGCAGCCGGCTTTCCA...ATTCCAAACTGTATCCCTGCTTCCACTCAAGAAAAGGTGGGAATGTCTGGAGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR GCA 90 bp CACTCCAGACATTCCCACCTTTTCTTGAGTGGAAGCAGGGATACAGTTTGGAATGCTTGGGGCCAGAGTTaGCAGAAGAGGGTTCCATTT +
Preference number: 4 (lower is better)
Translates to: HSRHSHLFLSGSRDTVWNAWGQS*QKRVPF
Trigger: AAATGGAACCCTCTTCTGGCAACTCTGGCCCCAAGC...ATTCCAAACTGTATCCCTGCTTCCACTCAAGAAAAGGTGGGAATGTCTGGAGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CCA 90 bp CACTCCAGACATTCCCACCTTTTCTTGAGTGGAAGCAGGGATACAGTTTGGAATGCAGGCTCCAGATCTTaGGCAAAGACTCCTTCCTCT +
Preference number: 4 (lower is better)
Translates to: HSRHSHLFLSGSRDTVWNAGSRS*AKTPSS
Trigger: AGAGGAAGGAGTCTTTGCCCAAGATCTGGAGCCTGC...ATTCCAAACTGTATCCCTGCTTCCACTCAAGAAAAGGTGGGAATGTCTGGAGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR CAA 72 bp ATCACTGCTGTCCACTCCAGACATTCCCACCTTTTCTaGAGTGGAAGCAGGGATACAGTTTGGAATGGAGAG +
Preference number: 4 (lower is better)
Translates to: ITAVHSRHSHLF*SGSRDTVWNGE
Trigger: CTCTCCATTCCAAACTGTATCCCTGCTTCCACTCAAGAAAAGGTGGGAATGTCTGGAGTGGACAGCAGTGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR CAA 72 bp CCACCTCAAGTGGCTTCGGTTCTTTGGGCTAGGAGTTaGACTATGCGTGTGGTAGAAAAATGGGAACACATG +
Preference number: 4 (lower is better)
Translates to: PPQVASVLWARS*TMRVVEKWEHM
Trigger: CATGTGTTCCCATTTTTCTACCACACGCATAGTCAAACTCCTAGCCCAAAGAACCGAAGCCACTTGAGGTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR TCA 90 bp CCTTCATTCCACAATCTCCAGTGTCCAGTATTTCTGGGCACTCAATACTGCCTTGATGCAGCTGTCCCCTaGCACAGAGATGAGATGTTT +
Preference number: 4 (lower is better)
Translates to: PSFHNLQCPVFLGTQYCLDAAVP*HRDEMF
Trigger: AAACATCTCATCTCTGTGTCAGGGGACAGCTGCATC...AAGGCAGTATTGAGTGCCCAGAAATACTGGACACTGGAGATTGTGGAATGAAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR TCA 90 bp TGGCTGTGGACACCACAACTCCAGAATTTCAGTCTAGTGTATCCATCCCTTTTTCGTGATGAGATGCTCTaGGACTCTGTCCTCTCTAGC +
Preference number: 4 (lower is better)
Translates to: WLWTPQLQNFSLVYPSLFRDEML*DSVLSS
Trigger: GCTAGAGAGGACAGAGTCTCAGAGCATCTCATCACG...AAAAAGGGATGGATACACTAGACTGAAATTCTGGAGTTGTGGTGTCCACAGCCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR GCA 90 bp TCCGGCTATTACTTTTCCAGTGGTCTCTTGCCCAGTGCCTTCATTCCACAATCTTTCAGAAAAGGACACTaGGGTTACCCGACTGGATAC +
Preference number: 4 (lower is better)
Translates to: SGYYFSSGLLPSAFIPQSFRKGH*GYPTGY
Trigger: GTATCCAGTCGGGTAACCGCAGTGTCCTTTTCTGAA...AGATTGTGGAATGAAGGCACTGGGCAAGAGACCACTGGAAAAGTAATAGCCGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR GCA 90 bp TGGCTGTGGACACCACAACTCCAGAATTTCAGTCTAGTGTATCCATCCCTTTTTCCTGAGGGGTCTGTCTaGACCTTAATGAGAGTGCCA +
Preference number: 4 (lower is better)
Translates to: WLWTPQLQNFSLVYPSLFPEGSV*TLMRVP
Trigger: TGGCACTCTCATTAAGGTGCAGACAGACCCCTCAGG...AAAAAGGGATGGATACACTAGACTGAAATTCTGGAGTTGTGGTGTCCACAGCCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR GCA 90 bp TGGCTGTGGACACCACAACTCCAGAATTTCAGTCTAGTGTATCCATCCCTTTTTGGGGAGGTCTGCACTTaGAGAAGGAATCGTGATGAG +
Preference number: 4 (lower is better)
Translates to: WLWTPQLQNFSLVYPSLFGEVCT*RRNRDE
Trigger: CTCATCACGATTCCTTCTGCAAGTGCAGACCTCCCC...AAAAAGGGATGGATACACTAGACTGAAATTCTGGAGTTGTGGTGTCCACAGCCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CCA 90 bp TGGCTGTGGACACCACAACTCCAGAATTTCAGTCTAGTGTATCCATCCCTTTTTCTGCGGTTACCCGACTaGATACTTTGTTGGAGGCCA +
Preference number: 4 (lower is better)
Translates to: WLWTPQLQNFSLVYPSLFLRLPD*ILCWRP
Trigger: TGGCCTCCAACAAAGTATCCAGTCGGGTAACCGCAG...AAAAAGGGATGGATACACTAGACTGAAATTCTGGAGTTGTGGTGTCCACAGCCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CCA 90 bp CACTCCAGACATTCCCACCTTTTCTTGAGTGGAAGCAGGGATACAGTTTGGAATAAGATCTCAGAGTCGTaGGCCTCCACTTTCAGCATC +
Preference number: 4 (lower is better)
Translates to: HSRHSHLFLSGSRDTVWNKISES*ASTFSI
Trigger: GATGCTGAAAGTGGAGGCCCACGACTCTGAGATCTT...ATTCCAAACTGTATCCCTGCTTCCACTCAAGAAAAGGTGGGAATGTCTGGAGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CCA 90 bp CTTTTTGTGTTTAGTGTACCCATCCCTTTTTGTGTTTCTGGATCAGAATTCCAAGCTCAGGGCTACCCCTaGCCTGCTGCTTTCCACTGG +
Preference number: 4 (lower is better)
Translates to: LFVFSVPIPFCVSGSEFQAQGYP*PAAFHW
Trigger: CCAGTGGAAAGCAGCAGGCCAGGGGTAGCCCTGAGC...TTGGAATTCTGATCCAGAAACACAAAAAGGGATGGGTACACTAAACACAAAAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR TCA 90 bp CTTTGCCTCTCAACACTGATCACTGCTGTCCACTCCAGACATTCCCACCTTTTCGACTCCTTCCTCTTGTaGCAACAATTGGATAATGTG +
Preference number: 4 (lower is better)
Translates to: LCLSTLITAVHSRHSHLFDSFLL*QQLDNV
Trigger: CACATTATCCAATTGTTGTCACAAGAGGAAGGAGTC...GAAAAGGTGGGAATGTCTGGAGTGGACAGCAGTGATCAGTGTTGAGAGGCAAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR GCA 90 bp CCTTCATTCCACAATCTCCAGTGTCCAGTATTTCTGGGCACTCAATACTGCCTTGTAATCCACAGAGCATaGACTGTCAGGACTGTGCTT +
Preference number: 4 (lower is better)
Translates to: PSFHNLQCPVFLGTQYCLVIHRA*TVRTVL
Trigger: AAGCACAGTCCTGACAGTGCATGCTCTGTGGATTAC...AAGGCAGTATTGAGTGCCCAGAAATACTGGACACTGGAGATTGTGGAATGAAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR GCA 90 bp GTGTTTAGTGTACCCATCCCTTTTTGTGTTTCTGGATCAGAATTCCAATTAATCGCCCACAGAGGCCAGTaGCTCCCTCTTCTTCCTCGT +
Preference number: 4 (lower is better)
Translates to: VFSVPIPFCVSGSEFQLIAHRGQ*LPLLPR
Trigger: ACGAGGAAGAAGAGGGAGGCACTGGCCTCTGTGGGC...GATTAATTGGAATTCTGATCCAGAAACACAAAAAGGGATGGGTACACTAAACAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR GCA 90 bp CACTCCAGACATTCCCACCTTTTCTTGAGTGGAAGCAGGGATACAGTTTGGAATGGAATCGTGATGAGATaGTCTGAGACTCTGTCCTCT +
Preference number: 4 (lower is better)
Translates to: HSRHSHLFLSGSRDTVWNGIVMR*SETLSS
Trigger: AGAGGACAGAGTCTCAGAGCATCTCATCACGATTCC...ATTCCAAACTGTATCCCTGCTTCCACTCAAGAAAAGGTGGGAATGTCTGGAGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR GCA 90 bp AGGTCTACAGTTGGCTTTAGGACACTAAATACCACATTACCTTTCATCTCTATCGAGGAGTGGCACCACTaGCTTTCAGCTGCTCACCAG +
Preference number: 4 (lower is better)
Translates to: RSTVGFRTLNTTLPFISIEEWHH*LSAAHQ
Trigger: CTGGTGAGCAGCTGAAAGGCAGTGGTGCCACTCCTC...GATAGAGATGAAAGGTAATGTGGTATTTAGTGTCCTAAAGCCAACTGTAGACCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CCA 90 bp CTTTTTGTGTTTAGTGTACCCATCCCTTTTTGTGTTTCTGGATCAGAATTCCAAGCTCCAGAAGCCCTCTaGGGAGAGGTTGGTCCTTGC +
Preference number: 4 (lower is better)
Translates to: LFVFSVPIPFCVSGSEFQAPEAL*GEVGPC
Trigger: GCAAGGACCAACCTCTCCCCAGAGGGCTTCTGGAGC...TTGGAATTCTGATCCAGAAACACAAAAAGGGATGGGTACACTAAACACAAAAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CCA 90 bp TGGCTGTGGACACCACAACTCCAGAATTTCAGTCTAGTGTATCCATCCCTTTTTAACAATTGGATAATGTaGGGGCAGGAGCAGGGTTGG +
Preference number: 4 (lower is better)
Translates to: WLWTPQLQNFSLVYPSLFNNWIM*GQEQGW
Trigger: CCAACCCTGCTCCTGCCCCCACATTATCCAATTGTT...AAAAAGGGATGGATACACTAGACTGAAATTCTGGAGTTGTGGTGTCCACAGCCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR TCA 90 bp TGGCTGTGGACACCACAACTCCAGAATTTCAGTCTAGTGTATCCATCCCTTTTTAGCAGTGATGGAAGATaGATGCTCATCCAGTGTCTG +
Preference number: 4 (lower is better)
Translates to: WLWTPQLQNFSLVYPSLFSSDGR*MLIQCL
Trigger: CAGACACTGGATGAGCATTCATCTTCCATCACTGCT...AAAAAGGGATGGATACACTAGACTGAAATTCTGGAGTTGTGGTGTCCACAGCCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR GCA 90 bp AGGTCTACAGTTGGCTTTAGGACACTAAATACCACATTACCTTTCATCTCTATCAGCTCAGCCAAGCGCTaGCTCATGCTGATGGTCATC +
Preference number: 4 (lower is better)
Translates to: RSTVGFRTLNTTLPFISISSAKR*LMLMVI
Trigger: GATGACCATCAGCATGAGGCAGCGCTTGGCTGAGCT...GATAGAGATGAAAGGTAATGTGGTATTTAGTGTCCTAAAGCCAACTGTAGACCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CCA 90 bp CTTTTTGTGTTTAGTGTACCCATCCCTTTTTGTGTTTCTGGATCAGAATTCCAACCAGCAGGGGCACAGTaGCGTTCACCTTTGAGGTCT +
Preference number: 4 (lower is better)
Translates to: LFVFSVPIPFCVSGSEFQPAGAQ*RSPLRS
Trigger: AGACCTCAAAGGTGAACGCCACTGTGCCCCTGCTGG...TTGGAATTCTGATCCAGAAACACAAAAAGGGATGGGTACACTAAACACAAAAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR TCA 90 bp TGGCTGTGGACACCACAACTCCAGAATTTCAGTCTAGTGTATCCATCCCTTTTTTACTTCTGCGTAATTTaGTGGATGGAGACCTCAGCA +
Preference number: 4 (lower is better)
Translates to: WLWTPQLQNFSLVYPSLFYFCVI*WMETSA
Trigger: TGCTGAGGTCTCCATCCATCAAATTACGCAGAAGTA...AAAAAGGGATGGATACACTAGACTGAAATTCTGGAGTTGTGGTGTCCACAGCCA
44% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR TCA 90 bp TGGCTGTGGACACCACAACTCCAGAATTTCAGTCTAGTGTATCCATCCCTTTTTGCCATCTTCACCCTGTaGCCCTTTAAACAGCTTTTT +
Preference number: 4 (lower is better)
Translates to: WLWTPQLQNFSLVYPSLFAIFTL*PFKQLF
Trigger: AAAAAGCTGTTTAAAGGGTCACAGGGTGAAGATGGC...AAAAAGGGATGGATACACTAGACTGAAATTCTGGAGTTGTGGTGTCCACAGCCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR TCA 90 bp GTGTTTAGTGTACCCATCCCTTTTTGTGTTTCTGGATCAGAATTCCAATTAATCGGCAATGTAGATCCCTaGGGGGTCTGTCTGCACCTT +
Preference number: 4 (lower is better)
Translates to: VFSVPIPFCVSGSEFQLIGNVDP*GVCLHL
Trigger: AAGGTGCAGACAGACCCCTCAGGGATCTACATTGCC...GATTAATTGGAATTCTGATCCAGAAACACAAAAAGGGATGGGTACACTAAACAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR TCA 90 bp GTGTTTAGTGTACCCATCCCTTTTTGTGTTTCTGGATCAGAATTCCAATTAATCCTTGGAGAAGGTTGTTaGCTGGCAGTTGCTGGGCAC +
Preference number: 4 (lower is better)
Translates to: VFSVPIPFCVSGSEFQLILGEGC*LAVAGH
Trigger: GTGCCCAGCAACTGCCAGTCAACAACCTTCTCCAAG...GATTAATTGGAATTCTGATCCAGAAACACAAAAAGGGATGGGTACACTAAACAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CCA 90 bp CTTTTTGTGTTTAGTGTACCCATCCCTTTTTGTGTTTCTGGATCAGAATTCCAACCGTGTACTTCCAGCTaGGCTCCACGTCCATGTCAT +
Preference number: 4 (lower is better)
Translates to: LFVFSVPIPFCVSGSEFQPCTSS*APRPCH
Trigger: ATGACATGGACGTGGAGCCCAGCTGGAAGTACACGG...TTGGAATTCTGATCCAGAAACACAAAAAGGGATGGGTACACTAAACACAAAAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CCA 90 bp GTGTTTAGTGTACCCATCCCTTTTTGTGTTTCTGGATCAGAATTCCAATTAATCAGGACGGTCAGGAAGTaGTTTGGGGATGTCCAGGAC +
Preference number: 4 (lower is better)
Translates to: VFSVPIPFCVSGSEFQLIRTVRK*FGDVQD
Trigger: GTCCTGGACATCCCCAAACCACTTCCTGACCGTCCT...GATTAATTGGAATTCTGATCCAGAAACACAAAAAGGGATGGGTACACTAAACAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CCA 90 bp AGGTCTACAGTTGGCTTTAGGACACTAAATACCACATTACCTTTCATCTCTATCCCTGCTGCTTTCCACTaGGTTACGAGTCTTCTCAGG +
Preference number: 4 (lower is better)
Translates to: RSTVGFRTLNTTLPFISIPAAFH*VTSLLR
Trigger: CCTGAGAAGACTCGTAACCCAGTGGAAAGCAGCAGG...GATAGAGATGAAAGGTAATGTGGTATTTAGTGTCCTAAAGCCAACTGTAGACCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR GCA 90 bp CTTTTTGTGTTTAGTGTACCCATCCCTTTTTGTGTTTCTGGATCAGAATTCCAAACCATCTTCAATGGGTaGAGGCTCCAGATCTTGGGC +
Preference number: 4 (lower is better)
Translates to: LFVFSVPIPFCVSGSEFQTIFNG*RLQILG
Trigger: GCCCAAGATCTGGAGCCTGCACCCATTGAAGATGGT...TTGGAATTCTGATCCAGAAACACAAAAAGGGATGGGTACACTAAACACAAAAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CCA 90 bp TCCAGTATTTCTGGGCACTCAATACTGCCTTTGAAAAGAGCCTCCTCCATGAGCAGGAGAAGTCAAAAATaGAGAGATTCTTATCGGAAC +
Preference number: 4 (lower is better)
Translates to: SSISGHSILPLKRASSMSRRSQK*RDSYRN
Trigger: GTTCCGATAAGAATCTCTCCATTTTTGACTTCTCCT...GCTCATGGAGGAGGCTCTTTTCAAAGGCAGTATTGAGTGCCCAGAAATACTGGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR CAA 72 bp GACTATGCGTGTGGTAGAAAAATGGGAACACATGGTTaGGGTATTCACATGGTTTGGGTATACTCAACACTC +
Preference number: 4 (lower is better)
Translates to: DYACGRKMGTHG*GIHMVWVYSTL
Trigger: GAGTGTTGAGTATACCCAAACCATGTGAATACCCAAACCATGTGTTCCCATTTTTCTACCACACGCATAGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CCA 90 bp CTTTTTGTGTTTAGTGTACCCATCCCTTTTTGTGTTTCTGGATCAGAATTCCAAGTGACAATCTCTGAGTaGCCAAACATGGTGGCCACA +
Preference number: 4 (lower is better)
Translates to: LFVFSVPIPFCVSGSEFQVTISE*PNMVAT
Trigger: TGTGGCCACCATGTTTGGCCACTCAGAGATTGTCAC...TTGGAATTCTGATCCAGAAACACAAAAAGGGATGGGTACACTAAACACAAAAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR GCA 90 bp CTTTTTGTGTTTAGTGTACCCATCCCTTTTTGTGTTTCTGGATCAGAATTCCAATTGCCCATCACTGGCTaGAAACTTGACAGCAGTGAT +
Preference number: 4 (lower is better)
Translates to: LFVFSVPIPFCVSGSEFQLPITG*KLDSSD
Trigger: ATCACTGCTGTCAAGTTTGCAGCCAGTGATGGGCAA...TTGGAATTCTGATCCAGAAACACAAAAAGGGATGGGTACACTAAACACAAAAAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR GCA 90 bp CTTTTTGTGTTTAGTGTACCCATCCCTTTTTGTGTTTCTGGATCAGAATTCCAATGTGGTACCAAACTATaGACAGACTGGGCTTTCTGG +
Preference number: 4 (lower is better)
Translates to: LFVFSVPIPFCVSGSEFQCGTKL*TDWAFW
Trigger: CCAGAAAGCCCAGTCTGTGCATAGTTTGGTACCACA...TTGGAATTCTGATCCAGAAACACAAAAAGGGATGGGTACACTAAACACAAAAAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CCA 90 bp GTGTTTAGTGTACCCATCCCTTTTTGTGTTTCTGGATCAGAATTCCAATTAATCAATGTACTTGGCACTTaGGGAGAAAGCCACACAAGC +
Preference number: 4 (lower is better)
Translates to: VFSVPIPFCVSGSEFQLINVLGT*GESHTS
Trigger: GCTTGTGTGGCTTTCTCCCCAAGTGCCAAGTACATT...GATTAATTGGAATTCTGATCCAGAAACACAAAAAGGGATGGGTACACTAAACAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR GCA 90 bp GTGTTTAGTGTACCCATCCCTTTTTGTGTTTCTGGATCAGAATTCCAATTAATCGATGTGACTTTGCTCTaGCGAAGGTGTCTTATAGCT +
Preference number: 4 (lower is better)
Translates to: VFSVPIPFCVSGSEFQLIDVTLL*RRCLIA
Trigger: AGCTATAAGACACCTTCGGCAGAGCAAAGTCACATC...GATTAATTGGAATTCTGATCCAGAAACACAAAAAGGGATGGGTACACTAAACAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
3UTR CAA 72 bp AAAAATGGGAACACATGGTTTGGGTATTCACATGGTTaGGGTATACTCAACACTCAGGTTGAACCAACAAAG +
Preference number: 4 (lower is better)
Translates to: KNGNTWFGYSHG*GILNTQVEPTK
Trigger: CTTTGTTGGTTCAACCTGAGTGTTGAGTATACCCAAACCATGTGAATACCCAAACCATGTGTTCCCATTTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS TCA 90 bp GCTTGGCTCCAGAAGCCCTCTGGGGAGAGGTTGGTCCTTGCTGCTTaGTCCCTCGCTGGCGCTGCCGCAGCTCAGCCAAGCGCTGCCTCA +
Preference number: 5 (lower is better)
Translates to: AWLQKPSGERLVLAA*SLAGAAAAQPSAAS
Trigger: TGAGGCAGCGCTTGGCTGAGCTGCGGCAGCGCCAGCGAGGGATCAAGCAGCAAGGACCAACCTCTCCCCAGAGGGCTTCTGGAGCCAAGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS GCA 90 bp TGCTGCTTGGCTCCAGAAGCCCTCTGGGGAGAGGTTGGTCCTTGCTaGTTGATCCCTCGCTGGCGCTGCCGCAGCTCAGCCAAGCGCTGC +
Preference number: 5 (lower is better)
Translates to: CCLAPEALWGEVGPC*LIPRWRCRSSAKRC
Trigger: GCAGCGCTTGGCTGAGCTGCGGCAGCGCCAGCGAGGGATCAAGCAGCAAGGACCAACCTCTCCCCAGAGGGCTTCTGGAGCCAAGCAGCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS GCA 90 bp TGGTGCTGCTTGGCTCCAGAAGCCCTCTGGGGAGAGGTTGGTCCTTaGTGCTTGATCCCTCGCTGGCGCTGCCGCAGCTCAGCCAAGCGC +
Preference number: 5 (lower is better)
Translates to: WCCLAPEALWGEVGP*CLIPRWRCRSSAKR
Trigger: GCGCTTGGCTGAGCTGCGGCAGCGCCAGCGAGGGATCAAGCAGCAAGGACCAACCTCTCCCCAGAGGGCTTCTGGAGCCAAGCAGCACCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CCA 90 bp GAAGCCCTCTGGGGAGAGGTTGGTCCTTGCTGCTTGATCCCTCGCTaGCGCTGCCGCAGCTCAGCCAAGCGCTGCCTCATGCTGATGGTC +
Preference number: 5 (lower is better)
Translates to: EALWGEVGPCCLIPR*RCRSSAKRCLMLMV
Trigger: GACCATCAGCATGAGGCAGCGCTTGGCTGAGCTGCGGCAGCGCCAGCGAGGGATCAAGCAGCAAGGACCAACCTCTCCCCAGAGGGCTTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS GCA 90 bp CTCTGGGGAGAGGTTGGTCCTTGCTGCTTGATCCCTCGCTGGCGCTaGCGCAGCTCAGCCAAGCGCTGCCTCATGCTGATGGTCATCTCA +
Preference number: 5 (lower is better)
Translates to: LWGEVGPCCLIPRWR*RSSAKRCLMLMVIS
Trigger: TGAGATGACCATCAGCATGAGGCAGCGCTTGGCTGAGCTGCGGCAGCGCCAGCGAGGGATCAAGCAGCAAGGACCAACCTCTCCCCAGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CCA 90 bp CTCGAGGGCTTGGGGCTAAGGTCTCTATCTGTCTCAGGTCCAACATaGAGCGAACACTCAGCTCCACGCCTGGCTGAGCCCAGCGCCCTC +
Preference number: 5 (lower is better)
Translates to: LEGLGLRSLSVSGPT*SEHSAPRLAEPSAL
Trigger: GAGGGCGCTGGGCTCAGCCAGGCGTGGAGCTGAGTGTTCGCTCCATGTTGGACCTGAGACAGATAGAGACCTTAGCCCCAAGCCCTCGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CCA 90 bp CATGCTTCCCAGGACCAGCTGGGGACACAGCCAGTGAGTCCTGGCTaGGGCCTCGAGGGCTTGGGGCTAAGGTCTCTATCTGTCTCAGGT +
Preference number: 5 (lower is better)
Translates to: HASQDQLGTQPVSPG*GLEGLGLRSLSVSG
Trigger: ACCTGAGACAGATAGAGACCTTAGCCCCAAGCCCTCGAGGCCCCAGCCAGGACTCACTGGCTGTGTCCCCAGCTGGTCCTGGGAAGCATG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS TCA 90 bp TCCCTCGCTGGCGCTGCCGCAGCTCAGCCAAGCGCTGCCTCATGCTaGTGGTCATCTCAGAGCTCAGACGCCAGACAAAGATGCAGCTGT +
Preference number: 5 (lower is better)
Translates to: SLAGAAAAQPSAASC*WSSQSSDARQRCSC
Trigger: ACAGCTGCATCTTTGTCTGGCGTCTGAGCTCTGAGATGACCATCAGCATGAGGCAGCGCTTGGCTGAGCTGCGGCAGCGCCAGCGAGGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS GCA 90 bp TGCTGCTTGATCCCTCGCTGGCGCTGCCGCAGCTCAGCCAAGCGCTaGCTCATGCTGATGGTCATCTCAGAGCTCAGACGCCAGACAAAG +
Preference number: 5 (lower is better)
Translates to: CCLIPRWRCRSSAKR*LMLMVISELRRQTK
Trigger: CTTTGTCTGGCGTCTGAGCTCTGAGATGACCATCAGCATGAGGCAGCGCTTGGCTGAGCTGCGGCAGCGCCAGCGAGGGATCAAGCAGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CCA 90 bp GGGGCCAGAGTTGCCAGAAGAGGGTTCCATTTCTGGGGGTGCTCCTaGAGGAGTGGCACCACTGCCTTTCAGCTGCTCACCAGACACCTG +
Preference number: 5 (lower is better)
Translates to: GARVARRGFHFWGCS*RSGTTAFQLLTRHL
Trigger: CAGGTGTCTGGTGAGCAGCTGAAAGGCAGTGGTGCCACTCCTCCAGGAGCACCCCCAGAAATGGAACCCTCTTCTGGCAACTCTGGCCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CCA 90 bp AGCCACCTGCTTGGGGCCAGAGTTGCCAGAAGAGGGTTCCATTTCTaGGGGTGCTCCTGGAGGAGTGGCACCACTGCCTTTCAGCTGCTC +
Preference number: 5 (lower is better)
Translates to: SHLLGARVARRGFHF*GCSWRSGTTAFQLL
Trigger: GAGCAGCTGAAAGGCAGTGGTGCCACTCCTCCAGGAGCACCCCCAGAAATGGAACCCTCTTCTGGCAACTCTGGCCCCAAGCAGGTGGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CCA 90 bp GGACAGGGGCTGCAAGCTCTCAGGGCCTTGGAGAAGGTTGTTGACTaGCAGTTGCTGGGCACAGGGGTGGTTGGGTCCAGGATAAGCCTG +
Preference number: 5 (lower is better)
Translates to: GQGLQALRALEKVVD*QLLGTGVVGSRISL
Trigger: CAGGCTTATCCTGGACCCAACCACCCCTGTGCCCAGCAACTGCCAGTCAACAACCTTCTCCAAGGCCCTGAGAGCTTGCAGCCCCTGTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS TCA 90 bp TTGGGAGGTCTGAAGCCGAGGGGCCCTTTCATTCTGACTGACACATaGCAGCTCAGGGCCCTGTGGACCATGCTTCCCAGGACCAGCTGG +
Preference number: 5 (lower is better)
Translates to: LGGLKPRGPFILTDT*QLRALWTMLPRTSW
Trigger: CCAGCTGGTCCTGGGAAGCATGGTCCACAGGGCCCTGAGCTGTCATGTGTCAGTCAGAATGAAAGGGCCCCTCGGCTTCAGACCTCCCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS GCA 90 bp TCTGAGGAAAGAGCTGGTCCAGAAGGGGGTACCACTGGAGCATGGTaGTGCTTGGCTCCAGAAGCCCTCTGGGGAGAGGTTGGTCCTTGC +
Preference number: 5 (lower is better)
Translates to: SEERAGPEGGTTGAW*CLAPEALWGEVGPC
Trigger: GCAAGGACCAACCTCTCCCCAGAGGGCTTCTGGAGCCAAGCAGCACCATGCTCCAGTGGTACCCCCTTCTGGACCAGCTCTTTCCTCAGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS GCA 90 bp CTGCTTGGGGCCAGAGTTGCCAGAAGAGGGTTCCATTTCTGGGGGTaGTCCTGGAGGAGTGGCACCACTGCCTTTCAGCTGCTCACCAGA +
Preference number: 5 (lower is better)
Translates to: LLGARVARRGFHFWG*SWRSGTTAFQLLTR
Trigger: TCTGGTGAGCAGCTGAAAGGCAGTGGTGCCACTCCTCCAGGAGCACCCCCAGAAATGGAACCCTCTTCTGGCAACTCTGGCCCCAAGCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CCA 90 bp CTGTCTGAGGAAAGAGCTGGTCCAGAAGGGGGTACCACTGGAGCATaGTGCTGCTTGGCTCCAGAAGCCCTCTGGGGAGAGGTTGGTCCT +
Preference number: 5 (lower is better)
Translates to: LSEERAGPEGGTTGA*CCLAPEALWGEVGP
Trigger: AGGACCAACCTCTCCCCAGAGGGCTTCTGGAGCCAAGCAGCACCATGCTCCAGTGGTACCCCCTTCTGGACCAGCTCTTTCCTCAGACAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS TCA 90 bp AGTGGGGAGGTCTGCACTTGCAGAAGGAATCGTGATGAGATGCTCTaGGACTCTGTCCTCTCTAGCACCCGTGCTGGGCCCCCTGGAGCA +
Preference number: 5 (lower is better)
Translates to: SGEVCTCRRNRDEML*DSVLSSTRAGPPGA
Trigger: TGCTCCAGGGGGCCCAGCACGGGTGCTAGAGAGGACAGAGTCTCAGAGCATCTCATCACGATTCCTTCTGCAAGTGCAGACCTCCCCACT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS GCA 90 bp AGTTCATGTATCCTAAGTGTCCCCATGCGGTCTCCGGAGGCCAGGTaGTGTCCATTGGGGCTAATACACACGGACCGGATGCCCACTCGG +
Preference number: 5 (lower is better)
Translates to: SSCILSVPMRSPEAR*CPLGLIHTDRMPTR
Trigger: CCGAGTGGGCATCCGGTCCGTGTGTATTAGCCCCAATGGACAGCACCTGGCCTCCGGAGACCGCATGGGGACACTTAGGATACATGAACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS GCA 90 bp TGCCGAAGGTGTCTTATAGCTGGTCACCGCTCGGTAGAGCTCCACTaGCTGGCGTACATTCCCCTGGAGCTCTGCCACGAGCTGTTCACA +
Preference number: 5 (lower is better)
Translates to: CRRCLIAGHRSVELH*LAYIPLELCHELFT
Trigger: TGTGAACAGCTCGTGGCAGAGCTCCAGGGGAATGTACGCCAGGCAGTGGAGCTCTACCGAGCGGTGACCAGCTATAAGACACCTTCGGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CCA 90 bp GGGTCCAGGTACTCCATGGTCTCTTGTGCCCGACTCATTTCCCAGTaGGACAGGCTTCGGAGCAAGGCTGGACTAGAGCCTGAGGCTAGT +
Preference number: 5 (lower is better)
Translates to: GSRYSMVSCARLISQ*DRLRSKAGLEPEAS
Trigger: ACTAGCCTCAGGCTCTAGTCCAGCCTTGCTCCGAAGCCTGTCCCACTGGGAAATGAGTCGGGCACAAGAGACCATGGAGTACCTGGACCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CCA 90 bp GTGGCACCACTGCCTTTCAGCTGCTCACCAGACACCTGTGATACCTaGTCAGGTCTGGACGTCAGGGCCAAGCCTGAGGAGGATAGGGAT +
Preference number: 5 (lower is better)
Translates to: VAPLPFSCSPDTCDT*SGLDVRAKPEEDRD
Trigger: ATCCCTATCCTCCTCAGGCTTGGCCCTGACGTCCAGACCTGACCAGGTATCACAGGTGTCTGGTGAGCAGCTGAAAGGCAGTGGTGCCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS-3UTR CAA 90 bp AGACCCCACCCATGCAGGGTAGTGGCGCTTTCTCTAGAAGGGCAGGCTGGCATAGGGCCTTGGAGAAGGTaGTTGACTGGCAGTTGCTGG +
Preference number: 5 (lower is better)
Translates to: RPHPCRVVALSLEGQAGIGPWRR*LTGSCW
Trigger: CCAGCAACTGCCAGTCAACAACCTTCTCCAAGGCCC...TATGCCAGCCTGCCCTTCTAGAGAAAGCGCCACTACCCTGCATGGGTGGGGTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS GCA 90 bp CCACAGAGCATGCACTGTCAGGACTGTGCTTTTCTGAGCCCCTGCTaGCTGGGTACATTCTTCCTAGGGATCCTCCGGTTGGAGCCTGCA +
Preference number: 5 (lower is better)
Translates to: PQSMHCQDCAFLSPC*LGTFFLGILRLEPA
Trigger: TGCAGGCTCCAACCGGAGGATCCCTAGGAAGAATGTACCCAGGCAGCAGGGGCTCAGAAAAGCACAGTCCTGACAGTGCATGCTCTGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CCA 90 bp ACGAGCTGTTCACACTGTTGCAGACTCAAGGCCAGTTCTGAGTCCTaGCTCAGGGCTACCCCTGGCCTGCTGCTTTCCACTGGGTTACGA +
Preference number: 5 (lower is better)
Translates to: TSCSHCCRLKASSES*LRATPGLLLSTGLR
Trigger: TCGTAACCCAGTGGAAAGCAGCAGGCCAGGGGTAGCCCTGAGCCAGGACTCAGAACTGGCCTTGAGTCTGCAACAGTGTGAACAGCTCGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS TCA 90 bp TGTCTCAGGTCCAACATGGAGCGAACACTCAGCTCCACGCCTGGCTaGGCCCAGCGCCCTCTTCTTTTAGGTCCTGTGTTAGCTACAGGA +
Preference number: 5 (lower is better)
Translates to: CLRSNMERTLSSTPG*AQRPLLLGPVLATG
Trigger: TCCTGTAGCTAACACAGGACCTAAAAGAAGAGGGCGCTGGGCTCAGCCAGGCGTGGAGCTGAGTGTTCGCTCCATGTTGGACCTGAGACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS TCA 90 bp CGAGCTCCTGTCGCACCGAAGAGAAGGTGTCTCTCAGGAGACGGGTaGTGTGACTTTGCTCTGCCGAAGGTGTCTTATAGCTGGTCACCG +
Preference number: 5 (lower is better)
Translates to: RAPVAPKRRCLSGDG*CDFALPKVSYSWSP
Trigger: CGGTGACCAGCTATAAGACACCTTCGGCAGAGCAAAGTCACATCACCCGTCTCCTGAGAGACACCTTCTCTTCGGTGCGACAGGAGCTCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS GCA 90 bp ATCTCAGAGTCGTGGGCCTCCACTTTCAGCATCTCACTCAGGGACTaGAGTTCATGTATCCTAAGTGTCCCCATGCGGTCTCCGGAGGCC +
Preference number: 5 (lower is better)
Translates to: ISESWASTFSISLRD*SSCILSVPMRSPEA
Trigger: GGCCTCCGGAGACCGCATGGGGACACTTAGGATACATGAACTGCAGTCCCTGAGTGAGATGCTGAAAGTGGAGGCCCACGACTCTGAGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CCA 90 bp AGTTGCCAGAAGAGGGTTCCATTTCTGGGGGTGCTCCTGGAGGAGTaGCACCACTGCCTTTCAGCTGCTCACCAGACACCTGTGATACCT +
Preference number: 5 (lower is better)
Translates to: SCQKRVPFLGVLLEE*HHCLSAAHQTPVIP
Trigger: AGGTATCACAGGTGTCTGGTGAGCAGCTGAAAGGCAGTGGTGCCACTCCTCCAGGAGCACCCCCAGAAATGGAACCCTCTTCTGGCAACT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS GCA 90 bp TTGTCCAAGTTGTTATGCCGTCGTGTCAACAGCACAGGAGCCACCTaGTTGGGGCCAGAGTTGCCAGAAGAGGGTTCCATTTCTGGGGGT +
Preference number: 5 (lower is better)
Translates to: LSKLLCRRVNSTGAT*LGPELPEEGSISGG
Trigger: ACCCCCAGAAATGGAACCCTCTTCTGGCAACTCTGGCCCCAAGCAGGTGGCTCCTGTGCTGTTGACACGACGGCATAACAACTTGGACAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS GCA 90 bp CGAAGAGAAGGTGTCTCTCAGGAGACGGGTGATGTGACTTTGCTCTaGCGAAGGTGTCTTATAGCTGGTCACCGCTCGGTAGAGCTCCAC +
Preference number: 5 (lower is better)
Translates to: RREGVSQETGDVTLL*RRCLIAGHRSVELH
Trigger: GTGGAGCTCTACCGAGCGGTGACCAGCTATAAGACACCTTCGGCAGAGCAAAGTCACATCACCCGTCTCCTGAGAGACACCTTCTCTTCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CCA 90 bp AAAAGGCGCACCGTGCCATCAGCACAGCCACAGAAGATGTATTCTTaGGTGACAGAGATGCAGTGGGCCACAGTGGTCCTTAGCTCCACC +
Preference number: 5 (lower is better)
Translates to: KRRTVPSAQPQKMYS*VTEMQWATVVLSST
Trigger: GGTGGAGCTAAGGACCACTGTGGCCCACTGCATCTCTGTCACCCAAGAATACATCTTCTGTGGCTGTGCTGATGGCACGGTGCGCCTTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS CCA 90 bp TCCAGTGTCTGCTGTAGACTATATTCCCGGCCAGCATCCAGCACGTaGATCAGACGGTCCCGGCTTGCCGATGCTAGCAGTTTCAAACCT +
Preference number: 5 (lower is better)
Translates to: SSVCCRLYSRPASST*IRRSRLADASSFKP
Trigger: AGGTTTGAAACTGCTAGCATCGGCAAGCCGGGACCGTCTGATCCACGTGCTGGATGCTGGCCGGGAATATAGTCTACAGCAGACACTGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CCA 90 bp TCCGAATATTCCGGTCTTGGCAGCCGATGGCCGTGTACTTCCAGCTaGGCTCCACGTCCATGTCATAGAGAGTTGTCTTCCGTACCACGT +
Preference number: 5 (lower is better)
Translates to: SEYSGLGSRWPCTSS*APRPCHRELSSVPR
Trigger: ACGTGGTACGGAAGACAACTCTCTATGACATGGACGTGGAGCCCAGCTGGAAGTACACGGCCATCGGCTGCCAAGACCGGAATATTCGGA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CCA 90 bp AGCCCAGCGCCCTCTTCTTTTAGGTCCTGTGTTAGCTACAGGAGCTaGGTCCAGGTACTCCATGGTCTCTTGTGCCCGACTCATTTCCCA +
Preference number: 5 (lower is better)
Translates to: SPAPSSFRSCVSYRS*VQVLHGLLCPTHFP
Trigger: TGGGAAATGAGTCGGGCACAAGAGACCATGGAGTACCTGGACCCAGCTCCTGTAGCTAACACAGGACCTAAAAGAAGAGGGCGCTGGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CCA 90 bp TATCTGTCTCAGGTCCAACATGGAGCGAACACTCAGCTCCACGCCTaGCTGAGCCCAGCGCCCTCTTCTTTTAGGTCCTGTGTTAGCTAC +
Preference number: 5 (lower is better)
Translates to: YLSQVQHGANTQLHA*LSPAPSSFRSCVSY
Trigger: GTAGCTAACACAGGACCTAAAAGAAGAGGGCGCTGGGCTCAGCCAGGCGTGGAGCTGAGTGTTCGCTCCATGTTGGACCTGAGACAGATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CCA 90 bp CTGTCCTCTCTAGCACCCGTGCTGGGCCCCCTGGAGCAGTCCCATTaGCCAGAGTCTCAAAGTGCTGTTTTAGAAACTGTTCCTGATCTG +
Preference number: 5 (lower is better)
Translates to: LSSLAPVLGPLEQSH*PESQSAVLETVPDL
Trigger: CAGATCAGGAACAGTTTCTAAAACAGCACTTTGAGACTCTGGCCAATGGGACTGCTCCAGGGGGCCCAGCACGGGTGCTAGAGAGGACAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CCA 90 bp GGCACCTCATCCTGTGGTACCAAACTATGCACAGACTGGGCTTTCTaGAGTCCAGCTAAAGGCCGGGTTGCAGCCATTTTCTTGGAGGCC +
Preference number: 5 (lower is better)
Translates to: GTSSCGTKLCTDWAF*SPAKGRVAAIFLEA
Trigger: GGCCTCCAAGAAAATGGCTGCAACCCGGCCTTTAGCTGGACTCCAGAAAGCCCAGTCTGTGCATAGTTTGGTACCACAGGATGAGGTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS-3UTR CAA 90 bp TGTAGGGAGAAAGTGGTCCCCAGGGATTCAACAGTCTGCTGGGGACCAGGGATAACATCAGTGAACAGGTaGTTCCTCAGCTCCCCCAGC +
Preference number: 5 (lower is better)
Translates to: CREKVVPRDSTVCWGPGITSVNR*FLSSPS
Trigger: GCTGGGGGAGCTGAGGAACAACCTGTTCACTGATGT...TATCCCTGGTCCCCAGCAGACTGTTGAATCCCTGGGGACCACTTTCTCCCTACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CAA 90 bp GAGAAAGTGGTCCCCAGGGATTCAACAGTCTGCTGGGGACCAGGGATAGAGAACTGCAGGTTGGAAGGATaGAAAAGGCGCACCGTGCCA +
Preference number: 5 (lower is better)
Translates to: EKVVPRDSTVCWGPGIENCRLEG*KRRTVP
Trigger: TGGCACGGTGCGCCTTTTCAATCCTTCCAACCTGCA...GTTCTCTATCCCTGGTCCCCAGCAGACTGTTGAATCCCTGGGGACCACTTTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CAA 90 bp AACTGGGATAGGACAAATCTGGACATGGGCAGCAATTGCCAGTGGCCTCAGACAACAGGAGCCACCTGCTaGGGGCCAGAGTTGCCAGAA +
Preference number: 5 (lower is better)
Translates to: NWDRTNLDMGSNCQWPQTTGATC*GPELPE
Trigger: TTCTGGCAACTCTGGCCCCAAGCAGGTGGCTCCTGT...TGTCTGAGGCCACTGGCAATTGCTGCCCATGTCCAGATTTGTCCTATCCCAGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CAA 90 bp TGTAGGGAGAAAGTGGTCCCCAGGGATTCAACAGTCTGCTGGGGACCAGGGATATTGTGGGCCAGGCCCTaGGATACAGGTGAGAATGTG +
Preference number: 5 (lower is better)
Translates to: CREKVVPRDSTVCWGPGILWARP*DTGENV
Trigger: CACATTCTCACCTGTATCCAAGGGCCTGGCCCACAA...TATCCCTGGTCCCCAGCAGACTGTTGAATCCCTGGGGACCACTTTCTCCCTACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CAA 90 bp CCCTACCTCTGCCACCTACCTGTCCGGCTATTACTTTTCCAGTGGTCTCTTGCCCAAGCTCTCAGGGCCTaGGAGAAGGTTGTTGACTGG +
Preference number: 5 (lower is better)
Translates to: PYLCHLPVRLLLFQWSLAQALRA*EKVVDW
Trigger: CCAGTCAACAACCTTCTCCAAGGCCCTGAGAGCTTG...GGCAAGAGACCACTGGAAAAGTAATAGCCGGACAGGTAGGTGGCAGAGGTAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS GCA 90 bp AGCAGTGGACGTGATGAAGGCACCTCATCCTGTGGTACCAAACTATaGACAGACTGGGCTTTCTGGAGTCCAGCTAAAGGCCGGGTTGCA +
Preference number: 5 (lower is better)
Translates to: SSGRDEGTSSCGTKL*TDWAFWSPAKGRVA
Trigger: TGCAACCCGGCCTTTAGCTGGACTCCAGAAAGCCCAGTCTGTGCATAGTTTGGTACCACAGGATGAGGTGCCTTCATCACGTCCACTGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CCA 90 bp AGGCGACTGGCCTCAGTGATGCTGGCAATGTCTGTTCCAAGAGCATaGGGTCTAGGTAGGGTACTGAGGAAGTGCAGGTTGGAAGGATTG +
Preference number: 5 (lower is better)
Translates to: RRLASVMLAMSVPRA*GLGRVLRKCRLEGL
Trigger: CAATCCTTCCAACCTGCACTTCCTCAGTACCCTACCTAGACCCCATGCTCTTGGAACAGACATTGCCAGCATCACTGAGGCCAGTCGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CCA 90 bp GGGCTTTCTGGAGTCCAGCTAAAGGCCGGGTTGCAGCCATTTTCTTaGAGGCCCAGCTGTTGTCCAAGTTGTTATGCCGTCGTGTCAACA +
Preference number: 5 (lower is better)
Translates to: GLSGVQLKAGLQPFS*RPSCCPSCYAVVST
Trigger: TGTTGACACGACGGCATAACAACTTGGACAACAGCTGGGCCTCCAAGAAAATGGCTGCAACCCGGCCTTTAGCTGGACTCCAGAAAGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CCA 90 bp GCCTTTCCTAGGCTCACCAAGGGGCCCGATTGTTCTGTTTCATTGTaGGCCAGGCCCTTGGATACAGGTGAGAATGTGGTCAGAGTAGGA +
Preference number: 5 (lower is better)
Translates to: AFPRLTKGPDCSVSL*ARPLDTGENVVRVG
Trigger: TCCTACTCTGACCACATTCTCACCTGTATCCAAGGGCCTGGCCCACAATGAAACAGAACAATCGGGCCCCTTGGTGAGCCTAGGAAAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS-3UTR CAA 90 bp CATAGGCCATCTCCGGTCAGCCTGGCTGTGGACACCACAACTCCAGAATTTCAGGCTGATCATTCGCACTaGCCCATCACTGGCTGCAAA +
Preference number: 5 (lower is better)
Translates to: HRPSPVSLAVDTTTPEFQADHSH*PITGCK
Trigger: TTTGCAGCCAGTGATGGGCAAGTGCGAATGATCAGC...CTGAAATTCTGGAGTTGTGGTGTCCACAGCCAGGCTGACCGGAGATGGCCTATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CAA 90 bp CTGGACATGGGCAGCAATTGCCAGTGGCCTCAGACATGCAGAAGAGGACAAAGTCCTTGGAGAAGGTTGTaGACTGGCAGTTGCTGGGCA +
Preference number: 5 (lower is better)
Translates to: LDMGSNCQWPQTCRRGQSPWRRL*TGSCWA
Trigger: TGCCCAGCAACTGCCAGTCAACAACCTTCTCCAAGG...ACTTTGTCCTCTTCTGCATGTCTGAGGCCACTGGCAATTGCTGCCCATGTCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS TCA 90 bp AATGGGTGCAGGCTCCAGATCTTGGGCAAAGACTCCTTCCTCTTGTaGCAACAATTGGATAATGTGGGGGCAGGAGCAGGGTTGGGAGGT +
Preference number: 5 (lower is better)
Translates to: NGCRLQILGKDSFLL*QQLDNVGAGAGLGG
Trigger: ACCTCCCAACCCTGCTCCTGCCCCCACATTATCCAATTGTTGTCACAAGAGGAAGGAGTCTTTGCCCAAGATCTGGAGCCTGCACCCATT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CCA 90 bp CGTGATGAAGGCACCTCATCCTGTGGTACCAAACTATGCACAGACTaGGCTTTCTGGAGTCCAGCTAAAGGCCGGGTTGCAGCCATTTTC +
Preference number: 5 (lower is better)
Translates to: RDEGTSSCGTKLCTD*AFWSPAKGRVAAIF
Trigger: GAAAATGGCTGCAACCCGGCCTTTAGCTGGACTCCAGAAAGCCCAGTCTGTGCATAGTTTGGTACCACAGGATGAGGTGCCTTCATCACG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CCA 90 bp AAAAGGCGCACCGTGCCATCAGCACAGCCACAGAAGATGTATTCTTaGGTGACAGAGATGCAGTGGGCCACAGTGGTTGTGAAGCTGTCT +
Preference number: 5 (lower is better)
Translates to: KRRTVPSAQPQKMYS*VTEMQWATVVVKLS
Trigger: AGACAGCTTCACAACCACTGTGGCCCACTGCATCTCTGTCACCCAAGAATACATCTTCTGTGGCTGTGCTGATGGCACGGTGCGCCTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229024.2
CDS-3UTR CAA 90 bp TACCTCTGCCACCTACCTGTCCGGCTATTACTTTTCCAGTGGTCTCTTGCCCAGAGGATGTGGTGCTGTTaGTGCTTCCGGGGATTGAAG +
Preference number: 5 (lower is better)
Translates to: YLCHLPVRLLLFQWSLAQRMWCC*CFRGLK
Trigger: CTTCAATCCCCGGAAGCACAAACAGCACCACATCCT...CTGGGCAAGAGACCACTGGAAAAGTAATAGCCGGACAGGTAGGTGGCAGAGGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CAA 90 bp CTTTGCCTCTCAACACTGATCACTGCTGTCCACTCCAGACATTCCCACCTTTTCAGCGACCCATCAGCTTaGTCTCCTCCAGGCAGCTCA +
Preference number: 5 (lower is better)
Translates to: LCLSTLITAVHSRHSHLFSDPSA*SPPGSS
Trigger: TGAGCTGCCTGGAGGAGACAAAGCTGATGGGTCGCT...GAAAAGGTGGGAATGTCTGGAGTGGACAGCAGTGATCAGTGTTGAGAGGCAAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CAA 90 bp CATAGGCCATCTCCGGTCAGCCTGGCTGTGGACACCACAACTCCAGAATTTCAGCCATGTCATAGAGAGTaGTCTTCCGTACCACGTGGT +
Preference number: 5 (lower is better)
Translates to: HRPSPVSLAVDTTTPEFQPCHRE*SSVPRG
Trigger: ACCACGTGGTACGGAAGACAACTCTCTATGACATGG...CTGAAATTCTGGAGTTGTGGTGTCCACAGCCAGGCTGACCGGAGATGGCCTATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CAA 90 bp TCCAGTATTTCTGGGCACTCAATACTGCCTTTGAAAAGAGCCTCCTCCATGAGCTGGGGCCTCGAGGGCTaGGGGCTAAGGTCTCTATCT +
Preference number: 5 (lower is better)
Translates to: SSISGHSILPLKRASSMSWGLEG*GLRSLS
Trigger: AGATAGAGACCTTAGCCCCAAGCCCTCGAGGCCCCA...GCTCATGGAGGAGGCTCTTTTCAAAGGCAGTATTGAGTGCCCAGAAATACTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CAA 90 bp TCCGGCTATTACTTTTCCAGTGGTCTCTTGCCCAGTGCCTTCATTCCACAATCTGAGCTTGAGGTTCAGTaGCCAGGCCCGGATTCTCGC +
Preference number: 5 (lower is better)
Translates to: SGYYFSSGLLPSAFIPQSELEVQ*PGPDSR
Trigger: GCGAGAATCCGGGCCTGGCAACTGAACCTCAAGCTC...AGATTGTGGAATGAAGGCACTGGGCAAGAGACCACTGGAAAAGTAATAGCCGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CAA 90 bp GAGAAAGTGGTCCCCAGGGATTCAACAGTCTGCTGGGGACCAGGGATAGAGAACGATTGTTCTGTTTCATaGTGGGCCAGGCCCTTGGAT +
Preference number: 5 (lower is better)
Translates to: EKVVPRDSTVCWGPGIENDCSVS*WARPLD
Trigger: ATCCAAGGGCCTGGCCCACAATGAAACAGAACAATC...GTTCTCTATCCCTGGTCCCCAGCAGACTGTTGAATCCCTGGGGACCACTTTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS GCA 90 bp CTGATTAGTTGGATCGAAGGTCAAGGCAATGGTGTCTGGGTACCTTaGATTGACCCCTCCAGAAAAGAGGCGACTGGCCTCAGTGATGCT +
Preference number: 5 (lower is better)
Translates to: LISWIEGQGNGVWVP*IDPSRKEATGLSDA
Trigger: AGCATCACTGAGGCCAGTCGCCTCTTTTCTGGAGGGGTCAATGCAAGGTACCCAGACACCATTGCCTTGACCTTCGATCCAACTAATCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS-3UTR CAA 90 bp AACTGGGATAGGACAAATCTGGACATGGGCAGCAATTGCCAGTGGCCTCAGACATCCAGGTACCAGAATTaGATGTGCCGGTTGCCTGCA +
Preference number: 5 (lower is better)
Translates to: NWDRTNLDMGSNCQWPQTSRYQN*MCRLPA
Trigger: TGCAGGCAACCGGCACATCAAATTCTGGTACCTGGA...TGTCTGAGGCCACTGGCAATTGCTGCCCATGTCCAGATTTGTCCTATCCCAGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CAA 90 bp TTACTTTTCCAGTGGTCTCTTGCCCAGTGCCTTCATTCCACAATCTCCAGTGTCCCTGGAGCAGTCCCATaGGCCAGAGTCTCAAAGTGC +
Preference number: 5 (lower is better)
Translates to: LLFQWSLAQCLHSTISSVPGAVP*ARVSKC
Trigger: GCACTTTGAGACTCTGGCCAATGGGACTGCTCCAGG...GACACTGGAGATTGTGGAATGAAGGCACTGGGCAAGAGACCACTGGAAAAGTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CAA 90 bp TGTAGGGAGAAAGTGGTCCCCAGGGATTCAACAGTCTGCTGGGGACCAGGGATACGACTGGATACTTTGTaGGAGGCCACTACAATGTTT +
Preference number: 5 (lower is better)
Translates to: CREKVVPRDSTVCWGPGIRLDTL*EATTMF
Trigger: AAACATTGTAGTGGCCTCCAACAAAGTATCCAGTCG...TATCCCTGGTCCCCAGCAGACTGTTGAATCCCTGGGGACCACTTTCTCCCTACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CAA 90 bp TGGCTGTGGACACCACAACTCCAGAATTTCAGTCTAGTGTATCCATCCCTTTTTGGGAGAGGTTGGTCCTaGCTGCTTGATCCCTCGCTG +
Preference number: 5 (lower is better)
Translates to: WLWTPQLQNFSLVYPSLFGRGWS*LLDPSL
Trigger: CAGCGAGGGATCAAGCAGCAAGGACCAACCTCTCCC...AAAAAGGGATGGATACACTAGACTGAAATTCTGGAGTTGTGGTGTCCACAGCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CAA 90 bp TACCTCTGCCACCTACCTGTCCGGCTATTACTTTTCCAGTGGTCTCTTGCCCAGTCATCTTCTCCCTCCTaGTCACTGTCTGAGGAAAGA +
Preference number: 5 (lower is better)
Translates to: YLCHLPVRLLLFQWSLAQSSSPS*SLSEER
Trigger: TCTTTCCTCAGACAGTGACAAGGAGGGAGAAGATGA...CTGGGCAAGAGACCACTGGAAAAGTAATAGCCGGACAGGTAGGTGGCAGAGGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CAA 90 bp TTACTTTTCCAGTGGTCTCTTGCCCAGTGCCTTCATTCCACAATCTCCAGTGTCCAGCTAAAGGCCGGGTaGCAGCCATTTTCTTGGAGG +
Preference number: 5 (lower is better)
Translates to: LLFQWSLAQCLHSTISSVQLKAG*QPFSWR
Trigger: CCTCCAAGAAAATGGCTGCAACCCGGCCTTTAGCTG...GACACTGGAGATTGTGGAATGAAGGCACTGGGCAAGAGACCACTGGAAAAGTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS GCA 90 bp GGTCTTACTGTCATCCAGGTACCAGAATTTGATGTGCCGGTTGCCTaGAGTGACAAAGTAGCTGCAGTCTTCAGAAAAGGACACTGCGGT +
Preference number: 5 (lower is better)
Translates to: GLTVIQVPEFDVPVA*SDKVAAVFRKGHCG
Trigger: ACCGCAGTGTCCTTTTCTGAAGACTGCAGCTACTTTGTCACTGCAGGCAACCGGCACATCAAATTCTGGTACCTGGATGACAGTAAGACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS-3UTR CAA 90 bp CCTTCATTCCACAATCTCCAGTGTCCAGTATTTCTGGGCACTCAATACTGCCTTGTTGCAGCCATTTTCTaGGAGGCCCAGCTGTTGTCC +
Preference number: 5 (lower is better)
Translates to: PSFHNLQCPVFLGTQYCLVAAIF*EAQLLS
Trigger: GGACAACAGCTGGGCCTCCAAGAAAATGGCTGCAAC...AAGGCAGTATTGAGTGCCCAGAAATACTGGACACTGGAGATTGTGGAATGAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CAA 90 bp TCCGGCTATTACTTTTCCAGTGGTCTCTTGCCCAGTGCCTTCATTCCACAATCTATACTACGCGCTAGCTaGGCCATAGAACTGGTGGTG +
Preference number: 5 (lower is better)
Translates to: SGYYFSSGLLPSAFIPQSILRAS*AIELVV
Trigger: CACCACCAGTTCTATGGCCAAGCTAGCGCGTAGTAT...AGATTGTGGAATGAAGGCACTGGGCAAGAGACCACTGGAAAAGTAATAGCCGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CAA 90 bp TTACTTTTCCAGTGGTCTCTTGCCCAGTGCCTTCATTCCACAATCTCCAGTGTCCACAGGCGGATGGTGTaGTCTGAGGAGCAAGTAATA +
Preference number: 5 (lower is better)
Translates to: LLFQWSLAQCLHSTISSVHRRMV*SEEQVI
Trigger: TATTACTTGCTCCTCAGACAACACCATCCGCCTGTG...GACACTGGAGATTGTGGAATGAAGGCACTGGGCAAGAGACCACTGGAAAAGTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CAA 90 bp TGGCTGTGGACACCACAACTCCAGAATTTCAGTCTAGTGTATCCATCCCTTTTTTTCCAGGCCCACACGTaGACAATCATGTCATGCTGG +
Preference number: 5 (lower is better)
Translates to: WLWTPQLQNFSLVYPSLFFQAHT*TIMSCW
Trigger: CCAGCATGACATGATTGTCAACGTGTGGGCCTGGAA...AAAAAGGGATGGATACACTAGACTGAAATTCTGGAGTTGTGGTGTCCACAGCCA
48% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CAA 90 bp TGGCTGTGGACACCACAACTCCAGAATTTCAGTCTAGTGTATCCATCCCTTTTTCAATGTACTTGGCACTaGGGGAGAAAGCCACACAAG +
Preference number: 5 (lower is better)
Translates to: WLWTPQLQNFSLVYPSLFQCTWH*GRKPHK
Trigger: CTTGTGTGGCTTTCTCCCCAAGTGCCAAGTACATTG...AAAAAGGGATGGATACACTAGACTGAAATTCTGGAGTTGTGGTGTCCACAGCCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CAA 90 bp TTACTTTTCCAGTGGTCTCTTGCCCAGTGCCTTCATTCCACAATCTCCAGTGTCACAGAAGATGTATTCTaGGGTGACAGAGATGCAGTG +
Preference number: 5 (lower is better)
Translates to: LLFQWSLAQCLHSTISSVTEDVF*GDRDAV
Trigger: CACTGCATCTCTGTCACCCAAGAATACATCTTCTGT...GACACTGGAGATTGTGGAATGAAGGCACTGGGCAAGAGACCACTGGAAAAGTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CAA 90 bp AGGTCTACAGTTGGCTTTAGGACACTAAATACCACATTACCTTTCATCTCTATCTCAGACGGTCCCGGCTaGCCGATGCTAGCAGTTTCA +
Preference number: 5 (lower is better)
Translates to: RSTVGFRTLNTTLPFISISDGPG*PMLAVS
Trigger: TGAAACTGCTAGCATCGGCAAGCCGGGACCGTCTGA...GATAGAGATGAAAGGTAATGTGGTATTTAGTGTCCTAAAGCCAACTGTAGACCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CAA 90 bp TGGCTGTGGACACCACAACTCCAGAATTTCAGTCTAGTGTATCCATCCCTTTTTTTACTTCTGCGTAATTaGATGGATGGAGACCTCAGC +
Preference number: 5 (lower is better)
Translates to: WLWTPQLQNFSLVYPSLFLLLRN*MDGDLS
Trigger: GCTGAGGTCTCCATCCATCAAATTACGCAGAAGTAA...AAAAAGGGATGGATACACTAGACTGAAATTCTGGAGTTGTGGTGTCCACAGCCA
44% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CAA 90 bp CTTTTTGTGTTTAGTGTACCCATCCCTTTTTGTGTTTCTGGATCAGAATTCCAACTTAGCTCCACCCATTaGTCCAGAAGCCTGCGATCG +
Preference number: 5 (lower is better)
Translates to: LFVFSVPIPFCVSGSEFQLSSTH*SRSLRS
Trigger: CGATCGCAGGCTTCTGGACAAATGGGTGGAGCTAAG...TTGGAATTCTGATCCAGAAACACAAAAAGGGATGGGTACACTAAACACAAAAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CAA 90 bp GTGTTTAGTGTACCCATCCCTTTTTGTGTTTCTGGATCAGAATTCCAATTAATCTGCAGGCTCCAGATCTaGGGCAAAGACTCCTTCCTC +
Preference number: 5 (lower is better)
Translates to: VFSVPIPFCVSGSEFQLICRLQI*GKDSFL
Trigger: GAGGAAGGAGTCTTTGCCCAAGATCTGGAGCCTGCA...GATTAATTGGAATTCTGATCCAGAAACACAAAAAGGGATGGGTACACTAAACAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CAA 90 bp CTTTTTGTGTTTAGTGTACCCATCCCTTTTTGTGTTTCTGGATCAGAATTCCAATGCTTGGGGCCAGAGTaGCCAGAAGAGGGTTCCATT +
Preference number: 5 (lower is better)
Translates to: LFVFSVPIPFCVSGSEFQCLGPE*PEEGSI
Trigger: AATGGAACCCTCTTCTGGCAACTCTGGCCCCAAGCA...TTGGAATTCTGATCCAGAAACACAAAAAGGGATGGGTACACTAAACACAAAAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CAA 90 bp CTTTTTGTGTTTAGTGTACCCATCCCTTTTTGTGTTTCTGGATCAGAATTCCAATTCTCCAAGGTTACCTaGGAGCTGAGGTCCTCTCTC +
Preference number: 5 (lower is better)
Translates to: LFVFSVPIPFCVSGSEFQFSKVT*ELRSSL
Trigger: GAGAGAGGACCTCAGCTCCAAGGTAACCTTGGAGAA...TTGGAATTCTGATCCAGAAACACAAAAAGGGATGGGTACACTAAACACAAAAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CAA 90 bp AGGTCTACAGTTGGCTTTAGGACACTAAATACCACATTACCTTTCATCTCTATCACAGACACAATGTACTaGGCACTTGGGGAGAAAGCC +
Preference number: 5 (lower is better)
Translates to: RSTVGFRTLNTTLPFISITDTMY*ALGEKA
Trigger: GGCTTTCTCCCCAAGTGCCAAGTACATTGTGTCTGT...GATAGAGATGAAAGGTAATGTGGTATTTAGTGTCCTAAAGCCAACTGTAGACCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS-3UTR CAA 90 bp CTTTTTGTGTTTAGTGTACCCATCCCTTTTTGTGTTTCTGGATCAGAATTCCAAACCCGACTGGATACTTaGTTGGAGGCCACTACAATG +
Preference number: 5 (lower is better)
Translates to: LFVFSVPIPFCVSGSEFQTRLDT*LEATTM
Trigger: CATTGTAGTGGCCTCCAACAAAGTATCCAGTCGGGT...TTGGAATTCTGATCCAGAAACACAAAAAGGGATGGGTACACTAAACACAAAAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS GCA 72 bp GCTCCAGAAGCCCTCTGGGGAGAGGTTGGTCCTTGCTaGTTGATCCCTCGCTGGCGCTGCCGCAGCTCAGCC +
Preference number: 6 (lower is better)
Translates to: APEALWGEVGPC*LIPRWRCRSSA
Trigger: GGCTGAGCTGCGGCAGCGCCAGCGAGGGATCAAGCAGCAAGGACCAACCTCTCCCCAGAGGGCTTCTGGAGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CAA 90 bp TGCTTGGCTCCAGAAGCCCTCTGGGGAGAGGTTGGTCCTTGCTGCTaGATCCCTCGCTGGCGCTGCCGCAGCTCAGCCAAGCGCTGCCTC +
Preference number: 6 (lower is better)
Translates to: CLAPEALWGEVGPCC*IPRWRCRSSAKRCL
Trigger: GAGGCAGCGCTTGGCTGAGCTGCGGCAGCGCCAGCGAGGGATCAAGCAGCAAGGACCAACCTCTCCCCAGAGGGCTTCTGGAGCCAAGCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CCA 72 bp TGGGGAGAGGTTGGTCCTTGCTGCTTGATCCCTCGCTaGCGCTGCCGCAGCTCAGCCAAGCGCTGCCTCATG +
Preference number: 6 (lower is better)
Translates to: WGEVGPCCLIPR*RCRSSAKRCLM
Trigger: CATGAGGCAGCGCTTGGCTGAGCTGCGGCAGCGCCAGCGAGGGATCAAGCAGCAAGGACCAACCTCTCCCCA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CCA 72 bp GTGCTGCTTGGCTCCAGAAGCCCTCTGGGGAGAGGTTaGTCCTTGCTGCTTGATCCCTCGCTGGCGCTGCCG +
Preference number: 6 (lower is better)
Translates to: VLLGSRSPLGRG*SLLLDPSLALP
Trigger: CGGCAGCGCCAGCGAGGGATCAAGCAGCAAGGACCAACCTCTCCCCAGAGGGCTTCTGGAGCCAAGCAGCAC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CAA 72 bp GTCCCCATGCGGTCTCCGGAGGCCAGGTGCTGTCCATaGGGGCTAATACACACGGACCGGATGCCCACTCGG +
Preference number: 6 (lower is better)
Translates to: VPMRSPEARCCP*GLIHTDRMPTR
Trigger: CCGAGTGGGCATCCGGTCCGTGTGTATTAGCCCCAATGGACAGCACCTGGCCTCCGGAGACCGCATGGGGAC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CAA 72 bp CCAGAAGCCCTCTGGGGAGAGGTTGGTCCTTGCTGCTaGATCCCTCGCTGGCGCTGCCGCAGCTCAGCCAAG +
Preference number: 6 (lower is better)
Translates to: PEALWGEVGPCC*IPRWRCRSSAK
Trigger: CTTGGCTGAGCTGCGGCAGCGCCAGCGAGGGATCAAGCAGCAAGGACCAACCTCTCCCCAGAGGGCTTCTGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CAA 90 bp ATGGTGCTGCTTGGCTCCAGAAGCCCTCTGGGGAGAGGTTGGTCCTaGCTGCTTGATCCCTCGCTGGCGCTGCCGCAGCTCAGCCAAGCG +
Preference number: 6 (lower is better)
Translates to: MVLLGSRSPLGRGWS*LLDPSLALPQLSQA
Trigger: CGCTTGGCTGAGCTGCGGCAGCGCCAGCGAGGGATCAAGCAGCAAGGACCAACCTCTCCCCAGAGGGCTTCTGGAGCCAAGCAGCACCAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS GCA 72 bp ATCCCTCGCTGGCGCTGCCGCAGCTCAGCCAAGCGCTaGCTCATGCTGATGGTCATCTCAGAGCTCAGACGC +
Preference number: 6 (lower is better)
Translates to: IPRWRCRSSAKR*LMLMVISELRR
Trigger: GCGTCTGAGCTCTGAGATGACCATCAGCATGAGGCAGCGCTTGGCTGAGCTGCGGCAGCGCCAGCGAGGGAT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS GCA 72 bp GAGGTTGGTCCTTGCTGCTTGATCCCTCGCTGGCGCTaGCGCAGCTCAGCCAAGCGCTGCCTCATGCTGATG +
Preference number: 6 (lower is better)
Translates to: EVGPCCLIPRWR*RSSAKRCLMLM
Trigger: CATCAGCATGAGGCAGCGCTTGGCTGAGCTGCGGCAGCGCCAGCGAGGGATCAAGCAGCAAGGACCAACCTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS GCA 72 bp TTGGCTCCAGAAGCCCTCTGGGGAGAGGTTGGTCCTTaGTGCTTGATCCCTCGCTGGCGCTGCCGCAGCTCA +
Preference number: 6 (lower is better)
Translates to: LAPEALWGEVGP*CLIPRWRCRSS
Trigger: TGAGCTGCGGCAGCGCCAGCGAGGGATCAAGCAGCAAGGACCAACCTCTCCCCAGAGGGCTTCTGGAGCCAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CCA 72 bp CAGGACCAGCTGGGGACACAGCCAGTGAGTCCTGGCTaGGGCCTCGAGGGCTTGGGGCTAAGGTCTCTATCT +
Preference number: 6 (lower is better)
Translates to: QDQLGTQPVSPG*GLEGLGLRSLS
Trigger: AGATAGAGACCTTAGCCCCAAGCCCTCGAGGCCCCAGCCAGGACTCACTGGCTGTGTCCCCAGCTGGTCCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS TCA 72 bp GGCGCTGCCGCAGCTCAGCCAAGCGCTGCCTCATGCTaGTGGTCATCTCAGAGCTCAGACGCCAGACAAAGA +
Preference number: 6 (lower is better)
Translates to: GAAAAQPSAASC*WSSQSSDARQR
Trigger: TCTTTGTCTGGCGTCTGAGCTCTGAGATGACCATCAGCATGAGGCAGCGCTTGGCTGAGCTGCGGCAGCGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS TCA 72 bp GGCACCACTGCCTTTCAGCTGCTCACCAGACACCTGTaGTACCTGGTCAGGTCTGGACGTCAGGGCCAAGCC +
Preference number: 6 (lower is better)
Translates to: GTTAFQLLTRHL*YLVRSGRQGQA
Trigger: GGCTTGGCCCTGACGTCCAGACCTGACCAGGTATCACAGGTGTCTGGTGAGCAGCTGAAAGGCAGTGGTGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CCA 72 bp CAGCCACCAGCTTGTGGCAGGGATCCTAAGCTGCCCTaGGTCTCTGCCTCCTGGAAGAGCAGTGGACGTGAT +
Preference number: 6 (lower is better)
Translates to: QPPACGRDPKLP*VSASWKSSGRD
Trigger: ATCACGTCCACTGCTCTTCCAGGAGGCAGAGACCCAGGGCAGCTTAGGATCCCTGCCACAAGCTGGTGGCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CAA 90 bp GAAAGAGCTGGTCCAGAAGGGGGTACCACTGGAGCATGGTGCTGCTaGGCTCCAGAAGCCCTCTGGGGAGAGGTTGGTCCTTGCTGCTTG +
Preference number: 6 (lower is better)
Translates to: ERAGPEGGTTGAWCC*APEALWGEVGPCCL
Trigger: CAAGCAGCAAGGACCAACCTCTCCCCAGAGGGCTTCTGGAGCCAAGCAGCACCATGCTCCAGTGGTACCCCCTTCTGGACCAGCTCTTTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS TCA 72 bp CTGAAGCCGAGGGGCCCTTTCATTCTGACTGACACATaGCAGCTCAGGGCCCTGTGGACCATGCTTCCCAGG +
Preference number: 6 (lower is better)
Translates to: LKPRGPFILTDT*QLRALWTMLPR
Trigger: CCTGGGAAGCATGGTCCACAGGGCCCTGAGCTGTCATGTGTCAGTCAGAATGAAAGGGCCCCTCGGCTTCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS TCA 72 bp GGGAGGTCTGAAGCCGAGGGGCCCTTTCATTCTGACTaGCACATGACAGCTCAGGGCCCTGTGGACCATGCT +
Preference number: 6 (lower is better)
Translates to: GRSEAEGPFHSD*HMTAQGPVDHA
Trigger: AGCATGGTCCACAGGGCCCTGAGCTGTCATGTGTCAGTCAGAATGAAAGGGCCCCTCGGCTTCAGACCTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS GCA 72 bp ATCCTAAGTGTCCCCATGCGGTCTCCGGAGGCCAGGTaGTGTCCATTGGGGCTAATACACACGGACCGGATG +
Preference number: 6 (lower is better)
Translates to: ILSVPMRSPEAR*CPLGLIHTDRM
Trigger: CATCCGGTCCGTGTGTATTAGCCCCAATGGACAGCACCTGGCCTCCGGAGACCGCATGGGGACACTTAGGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS GCA 72 bp GGTGCTCCTGGAGGAGTGGCACCACTGCCTTTCAGCTaGTCACCAGACACCTGTGATACCTGGTCAGGTCTG +
Preference number: 6 (lower is better)
Translates to: GAPGGVAPLPFS*SPDTCDTWSGL
Trigger: CAGACCTGACCAGGTATCACAGGTGTCTGGTGAGCAGCTGAAAGGCAGTGGTGCCACTCCTCCAGGAGCACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS GCA 72 bp GCCAGAGTTGCCAGAAGAGGGTTCCATTTCTGGGGGTaGTCCTGGAGGAGTGGCACCACTGCCTTTCAGCTG +
Preference number: 6 (lower is better)
Translates to: ARVARRGFHFWG*SWRSGTTAFQL
Trigger: CAGCTGAAAGGCAGTGGTGCCACTCCTCCAGGAGCACCCCCAGAAATGGAACCCTCTTCTGGCAACTCTGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS GCA 72 bp GTTCTGAGTCCTGGCTCAGGGCTACCCCTGGCCTGCTaGTTTCCACTGGGTTACGAGTCTTCTCAGGGGACA +
Preference number: 6 (lower is better)
Translates to: VLSPGSGLPLAC*FPLGYESSQGT
Trigger: TGTCCCCTGAGAAGACTCGTAACCCAGTGGAAAGCAGCAGGCCAGGGGTAGCCCTGAGCCAGGACTCAGAAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS GCA 72 bp GAGCTCCACTGCCTGGCGTACATTCCCCTGGAGCTCTaGCACGAGCTGTTCACACTGTTGCAGACTCAAGGC +
Preference number: 6 (lower is better)
Translates to: ELHCLAYIPLEL*HELFTLLQTQG
Trigger: GCCTTGAGTCTGCAACAGTGTGAACAGCTCGTGGCAGAGCTCCAGGGGAATGTACGCCAGGCAGTGGAGCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS GCA 72 bp TGTCTTATAGCTGGTCACCGCTCGGTAGAGCTCCACTaGCTGGCGTACATTCCCCTGGAGCTCTGCCACGAG +
Preference number: 6 (lower is better)
Translates to: CLIAGHRSVELH*LAYIPLELCHE
Trigger: CTCGTGGCAGAGCTCCAGGGGAATGTACGCCAGGCAGTGGAGCTCTACCGAGCGGTGACCAGCTATAAGACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CCA 72 bp GCTGCTCACCAGACACCTGTGATACCTGGTCAGGTCTaGACGTCAGGGCCAAGCCTGAGGAGGATAGGGATG +
Preference number: 6 (lower is better)
Translates to: AAHQTPVIPGQV*TSGPSLRRIGM
Trigger: CATCCCTATCCTCCTCAGGCTTGGCCCTGACGTCCAGACCTGACCAGGTATCACAGGTGTCTGGTGAGCAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CCA 72 bp CTGCCTTTCAGCTGCTCACCAGACACCTGTGATACCTaGTCAGGTCTGGACGTCAGGGCCAAGCCTGAGGAG +
Preference number: 6 (lower is better)
Translates to: LPFSCSPDTCDT*SGLDVRAKPEE
Trigger: CTCCTCAGGCTTGGCCCTGACGTCCAGACCTGACCAGGTATCACAGGTGTCTGGTGAGCAGCTGAAAGGCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CCA 72 bp GTTGCCAGAAGAGGGTTCCATTTCTGGGGGTGCTCCTaGAGGAGTGGCACCACTGCCTTTCAGCTGCTCACC +
Preference number: 6 (lower is better)
Translates to: VARRGFHFWGCS*RSGTTAFQLLT
Trigger: GGTGAGCAGCTGAAAGGCAGTGGTGCCACTCCTCCAGGAGCACCCCCAGAAATGGAACCCTCTTCTGGCAAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CAA 72 bp ATGCCCACTCGGGGGTCCATCAGCGACCCATCAGCTTaGTCTCCTCCAGGCAGCTCAGTGTCCAACAAAGCC +
Preference number: 6 (lower is better)
Translates to: MPTRGSISDPSA*SPPGSSVSNKA
Trigger: GGCTTTGTTGGACACTGAGCTGCCTGGAGGAGACAAAGCTGATGGGTCGCTGATGGACCCCCGAGTGGGCAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CAA 72 bp GGCCAGCATCCAGCACGTGGATCAGACGGTCCCGGCTaGCCGATGCTAGCAGTTTCAAACCTGTGTCTGGCT +
Preference number: 6 (lower is better)
Translates to: GQHPARGSDGPG*PMLAVSNLCLA
Trigger: AGCCAGACACAGGTTTGAAACTGCTAGCATCGGCAAGCCGGGACCGTCTGATCCACGTGCTGGATGCTGGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CAA 72 bp ACACAGCCAGTGAGTCCTGGCTGGGGCCTCGAGGGCTaGGGGCTAAGGTCTCTATCTGTCTCAGGTCCAACA +
Preference number: 6 (lower is better)
Translates to: TQPVSPGWGLEG*GLRSLSVSGPT
Trigger: TGTTGGACCTGAGACAGATAGAGACCTTAGCCCCAAGCCCTCGAGGCCCCAGCCAGGACTCACTGGCTGTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CAA 90 bp GGCCGGGTTGCAGCCATTTTCTTGGAGGCCCAGCTGTTGTCCAAGTaGTTATGCCGTCGTGTCAACAGCACAGGAGCCACCTGCTTGGGG +
Preference number: 6 (lower is better)
Translates to: GRVAAIFLEAQLLSK*LCRRVNSTGATCLG
Trigger: CCCCAAGCAGGTGGCTCCTGTGCTGTTGACACGACGGCATAACAACTTGGACAACAGCTGGGCCTCCAAGAAAATGGCTGCAACCCGGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS GCA 72 bp CATCACCCTCGGCTGGCTCTTCCAGGTCTGAGGAGATaGCATCCACACTTAGGGGCTCTGTGCTCTCAGAGT +
Preference number: 6 (lower is better)
Translates to: HHPRLALPGLRR*HPHLGALCSQS
Trigger: ACTCTGAGAGCACAGAGCCCCTAAGTGTGGATGGCATCTCCTCAGACCTGGAAGAGCCAGCCGAGGGTGATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS GCA 72 bp TTCCCCTGGAGCTCTGCCACGAGCTGTTCACACTGTTaGAGACTCAAGGCCAGTTCTGAGTCCTGGCTCAGG +
Preference number: 6 (lower is better)
Translates to: FPWSSATSCSHC*RLKASSESWLR
Trigger: CCTGAGCCAGGACTCAGAACTGGCCTTGAGTCTGCAACAGTGTGAACAGCTCGTGGCAGAGCTCCAGGGGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CCA 72 bp TGCTGTAGACTATATTCCCGGCCAGCATCCAGCACGTaGATCAGACGGTCCCGGCTTGCCGATGCTAGCAGT +
Preference number: 6 (lower is better)
Translates to: CCRLYSRPASST*IRRSRLADASS
Trigger: ACTGCTAGCATCGGCAAGCCGGGACCGTCTGATCCACGTGCTGGATGCTGGCCGGGAATATAGTCTACAGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CCA 72 bp TCCGGTCTTGGCAGCCGATGGCCGTGTACTTCCAGCTaGGCTCCACGTCCATGTCATAGAGAGTTGTCTTCC +
Preference number: 6 (lower is better)
Translates to: SGLGSRWPCTSS*APRPCHRELSS
Trigger: GGAAGACAACTCTCTATGACATGGACGTGGAGCCCAGCTGGAAGTACACGGCCATCGGCTGCCAAGACCGGA
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CCA 72 bp AAGAGGGTTCCATTTCTGGGGGTGCTCCTGGAGGAGTaGCACCACTGCCTTTCAGCTGCTCACCAGACACCT +
Preference number: 6 (lower is better)
Translates to: KRVPFLGVLLEE*HHCLSAAHQTP
Trigger: AGGTGTCTGGTGAGCAGCTGAAAGGCAGTGGTGCCACTCCTCCAGGAGCACCCCCAGAAATGGAACCCTCTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CCA 72 bp TCACACTGTTGCAGACTCAAGGCCAGTTCTGAGTCCTaGCTCAGGGCTACCCCTGGCCTGCTGCTTTCCACT +
Preference number: 6 (lower is better)
Translates to: SHCCRLKASSES*LRATPGLLLST
Trigger: AGTGGAAAGCAGCAGGCCAGGGGTAGCCCTGAGCCAGGACTCAGAACTGGCCTTGAGTCTGCAACAGTGTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CAA 72 bp ATGCAGTGGGCCACAGTGGTCCTTAGCTCCACCCATTaGTCCAGAAGCCTGCGATCGCTGAACTCGCACAGC +
Preference number: 6 (lower is better)
Translates to: MQWATVVLSSTH*SRSLRSLNSHS
Trigger: GCTGTGCGAGTTCAGCGATCGCAGGCTTCTGGACAAATGGGTGGAGCTAAGGACCACTGTGGCCCACTGCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS CAA 90 bp TCCAAGTTGTTATGCCGTCGTGTCAACAGCACAGGAGCCACCTGCTaGGGGCCAGAGTTGCCAGAAGAGGGTTCCATTTCTGGGGGTGCT +
Preference number: 6 (lower is better)
Translates to: SKLLCRRVNSTGATC*GPELPEEGSISGGA
Trigger: AGCACCCCCAGAAATGGAACCCTCTTCTGGCAACTCTGGCCCCAAGCAGGTGGCTCCTGTGCTGTTGACACGACGGCATAACAACTTGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CAA 90 bp CCAGCTAAAGGCCGGGTTGCAGCCATTTTCTTGGAGGCCCAGCTGTaGTCCAAGTTGTTATGCCGTCGTGTCAACAGCACAGGAGCCACC +
Preference number: 6 (lower is better)
Translates to: PAKGRVAAIFLEAQL*SKLLCRRVNSTGAT
Trigger: GGTGGCTCCTGTGCTGTTGACACGACGGCATAACAACTTGGACAACAGCTGGGCCTCCAAGAAAATGGCTGCAACCCGGCCTTTAGCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS TCA 72 bp TCCAACATGGAGCGAACACTCAGCTCCACGCCTGGCTaGGCCCAGCGCCCTCTTCTTTTAGGTCCTGTGTTA +
Preference number: 6 (lower is better)
Translates to: SNMERTLSSTPG*AQRPLLLGPVL
Trigger: TAACACAGGACCTAAAAGAAGAGGGCGCTGGGCTCAGCCAGGCGTGGAGCTGAGTGTTCGCTCCATGTTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CCA 72 bp TACTCCATGGTCTCTTGTGCCCGACTCATTTCCCAGTaGGACAGGCTTCGGAGCAAGGCTGGACTAGAGCCT +
Preference number: 6 (lower is better)
Translates to: YSMVSCARLISQ*DRLRSKAGLEP
Trigger: AGGCTCTAGTCCAGCCTTGCTCCGAAGCCTGTCCCACTGGGAAATGAGTCGGGCACAAGAGACCATGGAGTA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CAA 72 bp TGCTGCCTGGGTACATTCTTCCTAGGGATCCTCCGGTaGGAGCCTGCACCTGAAACGCACTGGTATCCATGG +
Preference number: 6 (lower is better)
Translates to: CCLGTFFLGILR*EPAPETHWYPW
Trigger: CCATGGATACCAGTGCGTTTCAGGTGCAGGCTCCAACCGGAGGATCCCTAGGAAGAATGTACCCAGGCAGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CAA 72 bp CAGACTGGGCTTTCTGGAGTCCAGCTAAAGGCCGGGTaGCAGCCATTTTCTTGGAGGCCCAGCTGTTGTCCA +
Preference number: 6 (lower is better)
Translates to: QTGLSGVQLKAG*QPFSWRPSCCP
Trigger: TGGACAACAGCTGGGCCTCCAAGAAAATGGCTGCAACCCGGCCTTTAGCTGGACTCCAGAAAGCCCAGTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CAA 90 bp AGGGCAGTAATGGTTTTCCTGGAGCTGTTGAGGATGTGGTGCTGTTaGTGCTTCCGGGGATTGAAGAGGACGACCACACACCCTGCTGGG +
Preference number: 6 (lower is better)
Translates to: RAVMVFLELLRMWCC*CFRGLKRTTTHPAG
Trigger: CCCAGCAGGGTGTGTGGTCGTCCTCTTCAATCCCCGGAAGCACAAACAGCACCACATCCTCAACAGCTCCAGGAAAACCATTACTGCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CAA 90 bp TCGCACCGAAGAGAAGGTGTCTCTCAGGAGACGGGTGATGTGACTTaGCTCTGCCGAAGGTGTCTTATAGCTGGTCACCGCTCGGTAGAG +
Preference number: 6 (lower is better)
Translates to: SHRREGVSQETGDVT*LCRRCLIAGHRSVE
Trigger: CTCTACCGAGCGGTGACCAGCTATAAGACACCTTCGGCAGAGCAAAGTCACATCACCCGTCTCCTGAGAGACACCTTCTCTTCGGTGCGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS TCA 72 bp ATTCTTCCTAGGGATCCTCCGGTTGGAGCCTGCACCTaGAACGCACTGGTATCCATGGTAGGGCTGTCACTG +
Preference number: 6 (lower is better)
Translates to: ILPRDPPVGACT*NALVSMVGLSL
Trigger: CAGTGACAGCCCTACCATGGATACCAGTGCGTTTCAGGTGCAGGCTCCAACCGGAGGATCCCTAGGAAGAAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS GCA 72 bp GGGAGGTCTGCACTTGCAGAAGGAATCGTGATGAGATaGTCTGAGACTCTGTCCTCTCTAGCACCCGTGCTG +
Preference number: 6 (lower is better)
Translates to: GRSALAEGIVMR*SETLSSLAPVL
Trigger: CAGCACGGGTGCTAGAGAGGACAGAGTCTCAGAGCATCTCATCACGATTCCTTCTGCAAGTGCAGACCTCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS GCA 72 bp TTGTTATGCCGTCGTGTCAACAGCACAGGAGCCACCTaGTTGGGGCCAGAGTTGCCAGAAGAGGGTTCCATT +
Preference number: 6 (lower is better)
Translates to: LLCRRVNSTGAT*LGPELPEEGSI
Trigger: AATGGAACCCTCTTCTGGCAACTCTGGCCCCAAGCAGGTGGCTCCTGTGCTGTTGACACGACGGCATAACAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CCA 72 bp CCGCTGCTAATGTTAAAGATCCGAATATTCCGGTCTTaGCAGCCGATGGCCGTGTACTTCCAGCTGGGCTCC +
Preference number: 6 (lower is better)
Translates to: PLLMLKIRIFRS*QPMAVYFQLGS
Trigger: GGAGCCCAGCTGGAAGTACACGGCCATCGGCTGCCAAGACCGGAATATTCGGATCTTTAACATTAGCAGCGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CCA 72 bp CTAGCACCCGTGCTGGGCCCCCTGGAGCAGTCCCATTaGCCAGAGTCTCAAAGTGCTGTTTTAGAAACTGTT +
Preference number: 6 (lower is better)
Translates to: LAPVLGPLEQSH*PESQSAVLETV
Trigger: AACAGTTTCTAAAACAGCACTTTGAGACTCTGGCCAATGGGACTGCTCCAGGGGGCCCAGCACGGGTGCTAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CCA 72 bp GGCACCTCATCCTGTGGTACCAAACTATGCACAGACTaGGCTTTCTGGAGTCCAGCTAAAGGCCGGGTTGCA +
Preference number: 6 (lower is better)
Translates to: GTSSCGTKLCTD*AFWSPAKGRVA
Trigger: TGCAACCCGGCCTTTAGCTGGACTCCAGAAAGCCCAGTCTGTGCATAGTTTGGTACCACAGGATGAGGTGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CAA 72 bp CTAGGTAGGGTACTGAGGAAGTGCAGGTTGGAAGGATaGAAAAGGCGCACCGTGCCATCAGCACAGCCACAG +
Preference number: 6 (lower is better)
Translates to: LGRVLRKCRLEG*KRRTVPSAQPQ
Trigger: CTGTGGCTGTGCTGATGGCACGGTGCGCCTTTTCAATCCTTCCAACCTGCACTTCCTCAGTACCCTACCTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CAA 72 bp TCTAGCACCCGTGCTGGGCCCCCTGGAGCAGTCCCATaGGCCAGAGTCTCAAAGTGCTGTTTTAGAAACTGT +
Preference number: 6 (lower is better)
Translates to: SSTRAGPPGAVP*ARVSKCCFRNC
Trigger: ACAGTTTCTAAAACAGCACTTTGAGACTCTGGCCAATGGGACTGCTCCAGGGGGCCCAGCACGGGTGCTAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CAA 72 bp GCAGCCATTTTCTTGGAGGCCCAGCTGTTGTCCAAGTaGTTATGCCGTCGTGTCAACAGCACAGGAGCCACC +
Preference number: 6 (lower is better)
Translates to: AAIFLEAQLLSK*LCRRVNSTGAT
Trigger: GGTGGCTCCTGTGCTGTTGACACGACGGCATAACAACTTGGACAACAGCTGGGCCTCCAAGAAAATGGCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CAA 72 bp GGCCGGGTTGCAGCCATTTTCTTGGAGGCCCAGCTGTaGTCCAAGTTGTTATGCCGTCGTGTCAACAGCACA +
Preference number: 6 (lower is better)
Translates to: GRVAAIFLEAQL*SKLLCRRVNST
Trigger: TGTGCTGTTGACACGACGGCATAACAACTTGGACAACAGCTGGGCCTCCAAGAAAATGGCTGCAACCCGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CAA 72 bp GGGCCCGATTGTTCTGTTTCATTGTGGGCCAGGCCCTaGGATACAGGTGAGAATGTGGTCAGAGTAGGACGG +
Preference number: 6 (lower is better)
Translates to: GPDCSVSLWARP*DTGENVVRVGR
Trigger: CCGTCCTACTCTGACCACATTCTCACCTGTATCCAAGGGCCTGGCCCACAATGAAACAGAACAATCGGGCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CAA 72 bp CCTAGGCTCACCAAGGGGCCCGATTGTTCTGTTTCATaGTGGGCCAGGCCCTTGGATACAGGTGAGAATGTG +
Preference number: 6 (lower is better)
Translates to: PRLTKGPDCSVS*WARPLDTGENV
Trigger: CACATTCTCACCTGTATCCAAGGGCCTGGCCCACAATGAAACAGAACAATCGGGCCCCTTGGTGAGCCTAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CAA 90 bp TGGGCTTTCTGGAGTCCAGCTAAAGGCCGGGTTGCAGCCATTTTCTaGGAGGCCCAGCTGTTGTCCAAGTTGTTATGCCGTCGTGTCAAC +
Preference number: 6 (lower is better)
Translates to: WAFWSPAKGRVAAIF*EAQLLSKLLCRRVN
Trigger: GTTGACACGACGGCATAACAACTTGGACAACAGCTGGGCCTCCAAGAAAATGGCTGCAACCCGGCCTTTAGCTGGACTCCAGAAAGCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CAA 90 bp CTCACCAAGGGGCCCGATTGTTCTGTTTCATTGTGGGCCAGGCCCTaGGATACAGGTGAGAATGTGGTCAGAGTAGGACGGTCAGGAAGT +
Preference number: 6 (lower is better)
Translates to: LTKGPDCSVSLWARP*DTGENVVRVGRSGS
Trigger: ACTTCCTGACCGTCCTACTCTGACCACATTCTCACCTGTATCCAAGGGCCTGGCCCACAATGAAACAGAACAATCGGGCCCCTTGGTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS TCA 72 bp GTCGCACCGAAGAGAAGGTGTCTCTCAGGAGACGGGTaGTGTGACTTTGCTCTGCCGAAGGTGTCTTATAGC +
Preference number: 6 (lower is better)
Translates to: VAPKRRCLSGDG*CDFALPKVSYS
Trigger: GCTATAAGACACCTTCGGCAGAGCAAAGTCACATCACCCGTCTCCTGAGAGACACCTTCTCTTCGGTGCGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS GCA 72 bp TCGTGGGCCTCCACTTTCAGCATCTCACTCAGGGACTaGAGTTCATGTATCCTAAGTGTCCCCATGCGGTCT +
Preference number: 6 (lower is better)
Translates to: SWASTFSISLRD*SSCILSVPMRS
Trigger: AGACCGCATGGGGACACTTAGGATACATGAACTGCAGTCCCTGAGTGAGATGCTGAAAGTGGAGGCCCACGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CCA 72 bp GCCTCAGTGATGCTGGCAATGTCTGTTCCAAGAGCATaGGGTCTAGGTAGGGTACTGAGGAAGTGCAGGTTG +
Preference number: 6 (lower is better)
Translates to: ASVMLAMSVPRA*GLGRVLRKCRL
Trigger: CAACCTGCACTTCCTCAGTACCCTACCTAGACCCCATGCTCTTGGAACAGACATTGCCAGCATCACTGAGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CAA 72 bp TCCGCTGCTAATGTTAAAGATCCGAATATTCCGGTCTaGGCAGCCGATGGCCGTGTACTTCCAGCTGGGCTC +
Preference number: 6 (lower is better)
Translates to: SAANVKDPNIPV*AADGRVLPAGL
Trigger: GAGCCCAGCTGGAAGTACACGGCCATCGGCTGCCAAGACCGGAATATTCGGATCTTTAACATTAGCAGCGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CAA 72 bp AGCAAGGCTGGACTAGAGCCTGAGGCTAGTTCTTTCTaGGTGCTCTTGCTAAGGATGGGCAGAGCTGGCAGT +
Preference number: 6 (lower is better)
Translates to: SKAGLEPEASSF*VLLLRMGRAGS
Trigger: ACTGCCAGCTCTGCCCATCCTTAGCAAGAGCACCAAGAAAGAACTAGCCTCAGGCTCTAGTCCAGCCTTGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CAA 72 bp TGGAGTCCAGCTAAAGGCCGGGTTGCAGCCATTTTCTaGGAGGCCCAGCTGTTGTCCAAGTTGTTATGCCGT +
Preference number: 6 (lower is better)
Translates to: WSPAKGRVAAIF*EAQLLSKLLCR
Trigger: ACGGCATAACAACTTGGACAACAGCTGGGCCTCCAAGAAAATGGCTGCAACCCGGCCTTTAGCTGGACTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CAA 72 bp AGAGAAGGTGTCTCTCAGGAGACGGGTGATGTGACTTaGCTCTGCCGAAGGTGTCTTATAGCTGGTCACCGC +
Preference number: 6 (lower is better)
Translates to: REGVSQETGDVT*LCRRCLIAGHR
Trigger: GCGGTGACCAGCTATAAGACACCTTCGGCAGAGCAAAGTCACATCACCCGTCTCCTGAGAGACACCTTCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CAA 72 bp GTTGTGAAGCTGTCTGTGTTCCTTAGCTCCACCCATTaGTCCAGAAGCCTGCGATCGCTGAACTCGCACAGC +
Preference number: 6 (lower is better)
Translates to: VVKLSVFLSSTH*SRSLRSLNSHS
Trigger: GCTGTGCGAGTTCAGCGATCGCAGGCTTCTGGACAAATGGGTGGAGCTAAGGAACACAGACAGCTTCACAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229024.2
CDS CAA 90 bp GCATGGGGTCTAGGTAGGGTACTGAGGAAGTGCAGGTTGGAAGGATaGAAAAGGCGCACCGTGCCATCAGCACAGCCACAGAAGATGTAT +
Preference number: 6 (lower is better)
Translates to: AWGLGRVLRKCRLEG*KRRTVPSAQPQKMY
Trigger: ATACATCTTCTGTGGCTGTGCTGATGGCACGGTGCGCCTTTTCAATCCTTCCAACCTGCACTTCCTCAGTACCCTACCTAGACCCCATGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CAA 90 bp AGGCTTCGGAGCAAGGCTGGACTAGAGCCTGAGGCTAGTTCTTTCTaGGTGCTCTTGCTAAGGATGGGCAGAGCTGGCAGTTCTTCTTCT +
Preference number: 6 (lower is better)
Translates to: RLRSKAGLEPEASSF*VLLLRMGRAGSSSS
Trigger: AGAAGAAGAACTGCCAGCTCTGCCCATCCTTAGCAAGAGCACCAAGAAAGAACTAGCCTCAGGCTCTAGTCCAGCCTTGCTCCGAAGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS TCA 72 bp TTACTCCCAGGACCTTCTCCAAGGTTACCTTGGAGCTaGGGTCCTCTCTCCGGTTTCCTGCTTTACTTCTGC +
Preference number: 6 (lower is better)
Translates to: LLPGPSPRLPWS*GPLSGFLLYFC
Trigger: GCAGAAGTAAAGCAGGAAACCGGAGAGAGGACCTCAGCTCCAAGGTAACCTTGGAGAAGGTCCTGGGAGTAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS TCA 72 bp TGCCATCAGCACAGCCACAGAAGATGTATTCTTGGGTaGCAGAGATGCAGTGGGCCACAGTGGTCCTTAGCT +
Preference number: 6 (lower is better)
Translates to: CHQHSHRRCILG*QRCSGPQWSLA
Trigger: AGCTAAGGACCACTGTGGCCCACTGCATCTCTGTCACCCAAGAATACATCTTCTGTGGCTGTGCTGATGGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066058.8
CDS TCA 72 bp AGGCTCCAGATCTTGGGCAAAGACTCCTTCCTCTTGTaGCAACAATTGGATAATGTGGGGGCAGGAGCAGGG +
Preference number: 6 (lower is better)
Translates to: RLQILGKDSFLL*QQLDNVGAGAG
Trigger: CCCTGCTCCTGCCCCCACATTATCCAATTGTTGTCACAAGAGGAAGGAGTCTTTGCCCAAGATCTGGAGCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS GCA 72 bp ACTGGGTTCCGGGTAGACAATACCATCTTCAATGGGTaGAGGCTCCAGATCTTGGGCAAAGACTCCTTCCTC +
Preference number: 6 (lower is better)
Translates to: TGFRVDNTIFNG*RLQILGKDSFL
Trigger: GAGGAAGGAGTCTTTGCCCAAGATCTGGAGCCTGCACCCATTGAAGATGGTATTGTCTACCCGGAACCCAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS GCA 72 bp ATTTTCTTGGAGGCCCAGCTGTTGTCCAAGTTGTTATaGCGTCGTGTCAACAGCACAGGAGCCACCTGCTTG +
Preference number: 6 (lower is better)
Translates to: IFLEAQLLSKLL*RRVNSTGATCL
Trigger: CAAGCAGGTGGCTCCTGTGCTGTTGACACGACGGCATAACAACTTGGACAACAGCTGGGCCTCCAAGAAAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CCA 72 bp TCCTGTGGTACCAAACTATGCACAGACTGGGCTTTCTaGAGTCCAGCTAAAGGCCGGGTTGCAGCCATTTTC +
Preference number: 6 (lower is better)
Translates to: SCGTKLCTDWAF*SPAKGRVAAIF
Trigger: GAAAATGGCTGCAACCCGGCCTTTAGCTGGACTCCAGAAAGCCCAGTCTGTGCATAGTTTGGTACCACAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CAA 72 bp GTGAGATTCGGATCGGTACAGGAGCTTGAGGTTCAGTaGCCAGGCCCGGATTCTCGCCAACAGAAATACTAC +
Preference number: 6 (lower is better)
Translates to: VRFGSVQELEVQ*PGPDSRQQKYY
Trigger: GTAGTATTTCTGTTGGCGAGAATCCGGGCCTGGCAACTGAACCTCAAGCTCCTGTACCGATCCGAATCTCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CAA 90 bp AGCAAGGCTGGACTAGAGCCTGAGGCTAGTTCTTTCTTGGTGCTCTaGCTAAGGATGGGCAGAGCTGGCAGTTCTTCTTCTTCAGTACCC +
Preference number: 6 (lower is better)
Translates to: SKAGLEPEASSFLVL*LRMGRAGSSSSSVP
Trigger: GGGTACTGAAGAAGAAGAACTGCCAGCTCTGCCCATCCTTAGCAAGAGCACCAAGAAAGAACTAGCCTCAGGCTCTAGTCCAGCCTTGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CAA 90 bp AACTATGCACAGACTGGGCTTTCTGGAGTCCAGCTAAAGGCCGGGTaGCAGCCATTTTCTTGGAGGCCCAGCTGTTGTCCAAGTTGTTAT +
Preference number: 6 (lower is better)
Translates to: NYAQTGLSGVQLKAG*QPFSWRPSCCPSCY
Trigger: ATAACAACTTGGACAACAGCTGGGCCTCCAAGAAAATGGCTGCAACCCGGCCTTTAGCTGGACTCCAGAAAGCCCAGTCTGTGCATAGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CCA 72 bp TGTCACTGGGTTCCGGGTAGACAATACCATCTTCAATaGGTGCAGGCTCCAGATCTTGGGCAAAGACTCCTT +
Preference number: 6 (lower is better)
Translates to: CHWVPGRQYHLQ*VQAPDLGQRLL
Trigger: AAGGAGTCTTTGCCCAAGATCTGGAGCCTGCACCCATTGAAGATGGTATTGTCTACCCGGAACCCAGTGACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CAA 72 bp GGACTAGAGCCTGAGGCTAGTTCTTTCTTGGTGCTCTaGCTAAGGATGGGCAGAGCTGGCAGTTCTTCTTCT +
Preference number: 6 (lower is better)
Translates to: GLEPEASSFLVL*LRMGRAGSSSS
Trigger: AGAAGAAGAACTGCCAGCTCTGCCCATCCTTAGCAAGAGCACCAAGAAAGAACTAGCCTCAGGCTCTAGTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS TCA 72 bp AGGCCACTACAATGTTTTTCTTCCAGGCCCACACGTTaGCAATCATGTCATGCTGGTAGCCCACAGACACAA +
Preference number: 6 (lower is better)
Translates to: RPLQCFSSRPTR*QSCHAGSPQTQ
Trigger: TTGTGTCTGTGGGCTACCAGCATGACATGATTGTCAACGTGTGGGCCTGGAAGAAAAACATTGTAGTGGCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS TCA 72 bp ATTCTTATCGGAACAGCTAGTGGCAATGTAGATCCCTaGGGGGTCTGTCTGCACCTTAATGAGAGTGCCATC +
Preference number: 6 (lower is better)
Translates to: ILIGTASGNVDP*GVCLHLNESAI
Trigger: GATGGCACTCTCATTAAGGTGCAGACAGACCCCTCAGGGATCTACATTGCCACTAGCTGTTCCGATAAGAAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CCA 72 bp TTCTTTCTTGGTGCTCTTGCTAAGGATGGGCAGAGCTaGCAGTTCTTCTTCTTCAGTACCCTCATCTTCTCC +
Preference number: 6 (lower is better)
Translates to: FFLGALAKDGQS*QFFFFSTLIFS
Trigger: GGAGAAGATGAGGGTACTGAAGAAGAAGAACTGCCAGCTCTGCCCATCCTTAGCAAGAGCACCAAGAAAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CAA 72 bp CTGCGTAATTTGATGGATGGAGACCTCAGCAAGTTCTaGATACGGCTAGTAATGGTTGACCCTTCTCCAGCC +
Preference number: 6 (lower is better)
Translates to: LRNLMDGDLSKF*IRLVMVDPSPA
Trigger: GGCTGGAGAAGGGTCAACCATTACTAGCCGTATCAAGAACTTGCTGAGGTCTCCATCCATCAAATTACGCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS CAA 90 bp GAGCTGAGGTCCTCTCTCCGGTTTCCTGCTTTACTTCTGCGTAATTaGATGGATGGAGACCTCAGCAAGTTCTTGATACGGCTAGTAATG +
Preference number: 6 (lower is better)
Translates to: ELRSSLRFPALLLRN*MDGDLSKFLIRLVM
Trigger: CATTACTAGCCGTATCAAGAACTTGCTGAGGTCTCCATCCATCAAATTACGCAGAAGTAAAGCAGGAAACCGGAGAGAGGACCTCAGCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS TCA 72 bp AGAGCTCAGACGCCAGACAAAGATGCAGCTGTCCCCTaGCACAGAGATGAGATGTTTGCAATCGTTACTAAA +
Preference number: 6 (lower is better)
Translates to: RAQTPDKDAAVP*HRDEMFAIVTK
Trigger: TTTAGTAACGATTGCAAACATCTCATCTCTGTGTCAGGGGACAGCTGCATCTTTGTCTGGCGTCTGAGCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS GCA 72 bp CGTTCGTGTAAACTGTACTCCTTCTCCAGACTTCTGTaGAGTTCGGAAGTAAATGCTCTTGTCTGCACCACA +
Preference number: 6 (lower is better)
Translates to: RSCKLYSFSRLL*SSEVNALVCTT
Trigger: TGTGGTGCAGACAAGAGCATTTACTTCCGAACTGCACAGAAGTCTGGAGAAGGAGTACAGTTTACACGAACG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2
CDS GCA 72 bp CCACTTTCTTGGGGTCCCTCACATCCCAAACATATATaGTGTGGTCGTTGTATACACAAGATAGCCACTGAT +
Preference number: 6 (lower is better)
Translates to: PLSWGPSHPKHI*CGRCIHKIATD
Trigger: ATCAGTGGCTATCTTGTGTATACAACGACCACAGCATATATGTTTGGGATGTGAGGGACCCCAAGAAAGTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066058.8
ENSMUST00000229024.2