Pregenerated sensors for MAPKAPK5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029454Ensembl transcript IDs: ENSMUST00000031410.14, ENSMUST00000111782.8, ENSMUST00000111783.8, ENSMUST00000111786.9, ENSMUST00000151352.3, ENSMUST00000152270.8, ENSMUST00000196315.2
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTGGGATCCCAGGTCACTTGCTGTATTCCAGCTGCAGCAGCAGCATaGACATCTCCCAGTGGGAAGGAGCTAAGCCCCTCTCCCTTTACC | + |
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Preference number: 1 (lower is better) Translates to: LGSQVTCCIPAAAAA*TSPSGKELSPSPFT Trigger: GGTAAAGGGAGAGGGGCTTAGCTCCTTCCCACTGGGAGATGTTCATGCTGCTGCTGCAGCTGGAATACAGCAAGTGACCTGGGATCCCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000151352.3 |
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| 3UTR CCA 90 bp | TCAGTGTCATCAGAGGATAACTTCCTGTCTCATCAGATTAGAGACTaGGATCCCAGGTCACTTGCTGTATTCCAGCTGCAGCAGCAGCAT | + |
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Preference number: 1 (lower is better) Translates to: SVSSEDNFLSHQIRD*DPRSLAVFQLQQQH Trigger: ATGCTGCTGCTGCAGCTGGAATACAGCAAGTGACCTGGGATCCCAGTCTCTAATCTGATGAGACAGGAAGTTATCCTCTGATGACACTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151352.3 |
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| 3UTR-3UTR CCA 90 bp | TCTCATCAGATTAGAGACTGGGATCCCAGGTCACTTGCTGTATTCCAGCTGCAGCCAGACTTCTCCTTCTaGTGCCGTCTCTGCGCTTCC | + |
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Preference number: 2 (lower is better) Translates to: SHQIRDWDPRSLAVFQLQPDFSF*CRLCAS Trigger: GGAAGCGCAGAGACGGCACCAGAAGGAGAAGTCTGG...CTGCAGCTGGAATACAGCAAGTGACCTGGGATCCCAGTCTCTAATCTGATGAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151352.3 |
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| 3UTR-3UTR CCA 90 bp | ATCAGATTAGAGACTGGGATCCCAGGTCACTTGCTGTATTCCAGCTGCAGCAGCATGAACATCTCCCAGTaGGAAGGAGCTAAGCCCCTC | + |
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Preference number: 2 (lower is better) Translates to: IRLETGIPGHLLYSSCSSMNISQ*EGAKPL Trigger: GAGGGGCTTAGCTCCTTCCCACTGGGAGATGTTCAT...GCTGCTGCAGCTGGAATACAGCAAGTGACCTGGGATCCCAGTCTCTAATCTGAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000151352.3 |
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| 3UTR CAA 90 bp | ATAACTTCCTGTCTCATCAGATTAGAGACTGGGATCCCAGGTCACTaGCTGTATTCCAGCTGCAGCAGCAGCATGAACATCTCCCAGTGG | + |
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Preference number: 2 (lower is better) Translates to: ITSCLIRLETGIPGH*LYSSCSSSMNISQW Trigger: CCACTGGGAGATGTTCATGCTGCTGCTGCAGCTGGAATACAGCAAGTGACCTGGGATCCCAGTCTCTAATCTGATGAGACAGGAAGTTAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151352.3 |
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| 3UTR TCA 72 bp | CAGGTCACTTGCTGTATTCCAGCTGCAGCAGCAGCATaGACATCTCCCAGTGGGAAGGAGCTAAGCCCCTCT | + |
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Preference number: 3 (lower is better) Translates to: QVTCCIPAAAAA*TSPSGKELSPS Trigger: AGAGGGGCTTAGCTCCTTCCCACTGGGAGATGTTCATGCTGCTGCTGCAGCTGGAATACAGCAAGTGACCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000151352.3 |
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| 3UTR GCA 72 bp | GAGACTGGGATCCCAGGTCACTTGCTGTATTCCAGCTaGAGCAGCAGCATGAACATCTCCCAGTGGGAAGGA | + |
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Preference number: 3 (lower is better) Translates to: ETGIPGHLLYSS*SSSMNISQWEG Trigger: TCCTTCCCACTGGGAGATGTTCATGCTGCTGCTGCAGCTGGAATACAGCAAGTGACCTGGGATCCCAGTCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151352.3 |
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| 3UTR CCA 72 bp | TCAGAGGATAACTTCCTGTCTCATCAGATTAGAGACTaGGATCCCAGGTCACTTGCTGTATTCCAGCTGCAG | + |
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Preference number: 3 (lower is better) Translates to: SEDNFLSHQIRD*DPRSLAVFQLQ Trigger: CTGCAGCTGGAATACAGCAAGTGACCTGGGATCCCAGTCTCTAATCTGATGAGACAGGAAGTTATCCTCTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151352.3 |
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| 3UTR CAA 72 bp | TGTCTCATCAGATTAGAGACTGGGATCCCAGGTCACTaGCTGTATTCCAGCTGCAGCAGCAGCATGAACATC | + |
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Preference number: 4 (lower is better) Translates to: CLIRLETGIPGH*LYSSCSSSMNI Trigger: GATGTTCATGCTGCTGCTGCAGCTGGAATACAGCAAGTGACCTGGGATCCCAGTCTCTAATCTGATGAGACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151352.3 |
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| CDS-3UTR TCA 90 bp | ATCAGATTAGAGACTGGGATCCCAGGTCACTTGCTGTATTCCAGCTGCAGCAGCAGTGACAGCATCAAATaGGGAAAAGCAGTTGTTCTC | + |
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Preference number: 4 (lower is better) Translates to: IRLETGIPGHLLYSSCSSSDSIK*GKAVVL Trigger: GAGAACAACTGCTTTTCCTCATTTGATGCTGTCACT...GCTGCTGCAGCTGGAATACAGCAAGTGACCTGGGATCCCAGTCTCTAATCTGAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000151352.3 |
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| CDS-3UTR CCA 90 bp | GTAAGGGGTAAACTGGGGTGTCATCAAATCACCTTGGTCAACTTTAGCAAACCCCAAAGCAAAAGGAGGTaGAGGCAGGAGGTCAGAAGA | + |
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Preference number: 4 (lower is better) Translates to: VRGKLGCHQITLVNFSKPQSKRR*RQEVRR Trigger: TCTTCTGACCTCCTGCCTCCACCTCCTTTTGCTTTG...GGGTTTGCTAAAGTTGACCAAGGTGATTTGATGACACCCCAGTTTACCCCTTAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000151352.3 |
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| CDS-3UTR GCA 90 bp | GGTAAACTGGGGTGTCATCAAATCACCTTGGTCAACTTTAGCAAACCCAAAGTCAAGATCGAGGACATCTaGAGCTACAGAATAAGTTCA | + |
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Preference number: 4 (lower is better) Translates to: GKLGCHQITLVNFSKPKVKIEDI*SYRISS Trigger: TGAACTTATTCTGTAGCTGCAGATGTCCTCGATCTT...GACTTTGGGTTTGCTAAAGTTGACCAAGGTGATTTGATGACACCCCAGTTTACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000151352.3 |
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| CDS GCA 90 bp | GTGCAGGGGTTTGAGGCTGACCTTGAGGTCCTGGATCCTCATGTTTaGCAGCTGCTCGGCGTGCGCCTGCTGGATCCCCGCAACCACCGC | + |
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Preference number: 5 (lower is better) Translates to: VQGFEADLEVLDPHV*QLLGVRLLDPRNHR Trigger: GCGGTGGTTGCGGGGATCCAGCAGGCGCACGCCGAGCAGCTGGCAAACATGAGGATCCAGGACCTCAAGGTCAGCCTCAAACCCCTGCAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000031410.14 ENSMUST00000111782.8 ENSMUST00000111783.8 ENSMUST00000111786.9 |
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| CDS GCA 90 bp | GGTTTGAGGCTGACCTTGAGGTCCTGGATCCTCATGTTTGCCAGCTaGTCGGCGTGCGCCTGCTGGATCCCCGCAACCACCGCCTTATCC | + |
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Preference number: 5 (lower is better) Translates to: GLRLTLRSWILMFAS*SACACWIPATTALS Trigger: GGATAAGGCGGTGGTTGCGGGGATCCAGCAGGCGCACGCCGAGCAGCTGGCAAACATGAGGATCCAGGACCTCAAGGTCAGCCTCAAACC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000031410.14 ENSMUST00000111782.8 ENSMUST00000111783.8 ENSMUST00000111786.9 |
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| CDS GCA 90 bp | CTGACCTTGAGGTCCTGGATCCTCATGTTTGCCAGCTGCTCGGCGTaGGCCTGCTGGATCCCCGCAACCACCGCCTTATCCATCATCAGC | + |
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Preference number: 5 (lower is better) Translates to: LTLRSWILMFASCSA*ACWIPATTALSIIS Trigger: GCTGATGATGGATAAGGCGGTGGTTGCGGGGATCCAGCAGGCGCACGCCGAGCAGCTGGCAAACATGAGGATCCAGGACCTCAAGGTCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000031410.14 ENSMUST00000111782.8 ENSMUST00000111783.8 ENSMUST00000111786.9 |
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| CDS GCA 90 bp | CTCGTGGGGAAGGGTCTGCTCTTCGATCACCTGCTTTACCACCTCTaGCAGCTTCAATCGGTCAACTTTATCTGTGAATCCACGGCCATT | + |
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Preference number: 5 (lower is better) Translates to: LVGKGLLFDHLLYHL*QLQSVNFICESTAI Trigger: AATGGCCGTGGATTCACAGATAAAGTTGACCGATTGAAGCTGGCAGAGGTGGTAAAGCAGGTGATCGAAGAGCAGACCCTTCCCCACGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000031410.14 ENSMUST00000111782.8 ENSMUST00000111783.8 ENSMUST00000111786.9 ENSMUST00000152270.8 |
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| CDS GCA 90 bp | AAGCAAAAGGAGGTGGAGGCAGGAGGTCAGAAGATCGAGGACATCTaGAGCTACAGAATAAGTTCAAGGCTGGCCTGGGATAGACAGACT | + |
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Preference number: 5 (lower is better) Translates to: KQKEVEAGGQKIEDI*SYRISSRLAWDRQT Trigger: AGTCTGTCTATCCCAGGCCAGCCTTGAACTTATTCTGTAGCTGCAGATGTCCTCGATCTTCTGACCTCCTGCCTCCACCTCCTTTTGCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000151352.3 |
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| CDS TCA 90 bp | CTTCATTCTCTCCTTTACCAGCCTGGGGGAGGATACACTGGGCAATaGCATCTCGAAGCTTTTCCAAGGCAACATTTGAGTCCTCAGTTC | + |
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Preference number: 5 (lower is better) Translates to: LHSLLYQPGGGYTGQ*HLEAFPRQHLSPQF Trigger: GAACTGAGGACTCAAATGTTGCCTTGGAAAAGCTTCGAGATGTCATTGCCCAGTGTATCCTCCCCCAGGCTGGTAAAGGAGAGAATGAAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000031410.14 ENSMUST00000111786.9 ENSMUST00000152270.8 |
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| CDS CCA 90 bp | ACCTTCAGAAGCTTCCTCACAACATCTTTAGCCATCTCTGAGATCTaGCTCCACTCTTCTTCTGGGAACTCGAAACTTCCTGTCATGATC | + |
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Preference number: 5 (lower is better) Translates to: TFRSFLTTSLAISEI*LHSSSGNSKLPVMI Trigger: GATCATGACAGGAAGTTTCGAGTTCCCAGAAGAAGAGTGGAGCCAGATCTCAGAGATGGCTAAAGATGTTGTGAGGAAGCTTCTGAAGGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000031410.14 ENSMUST00000111782.8 ENSMUST00000111783.8 ENSMUST00000111786.9 |
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| CDS TCA 90 bp | GATACACTGGGCAATGACATCTCGAAGCTTTTCCAAGGCAACATTTaGGTCCTCAGTTCCATTCTCATGGTCGTGTATATAAATACCGTC | + |
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Preference number: 5 (lower is better) Translates to: DTLGNDISKLFQGNI*VLSSILMVVYINTV Trigger: GACGGTATTTATATACACGACCATGAGAATGGAACTGAGGACTCAAATGTTGCCTTGGAAAAGCTTCGAGATGTCATTGCCCAGTGTATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000031410.14 ENSMUST00000111782.8 ENSMUST00000111783.8 ENSMUST00000111786.9 ENSMUST00000152270.8 |
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| CDS TCA 90 bp | TTCACACAGACTCTAACTGGACCACTAATTCCGGCTCCCAGTTTCTaGGTCCAATTGATACTATATTCTTCTAAAATGGAGGTCTCCTTG | + |
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Preference number: 5 (lower is better) Translates to: FTQTLTGPLIPAPSF*VQLILYSSKMEVSL Trigger: CAAGGAGACCTCCATTTTAGAAGAATATAGTATCAATTGGACTCAGAAACTGGGAGCCGGAATTAGTGGTCCAGTTAGAGTCTGTGTGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031410.14 ENSMUST00000111783.8 ENSMUST00000196315.2 |
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| CDS TCA 90 bp | CTAGCTTTTGGACGATCAAGAAGAATTTTCAGTGCAAACCGTTCTTaGGTGGATTTCTTCACACAGACTCTAACTGGACCACTAATTCCG | + |
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Preference number: 5 (lower is better) Translates to: LAFGRSRRIFSANRS*VDFFTQTLTGPLIP Trigger: CGGAATTAGTGGTCCAGTTAGAGTCTGTGTGAAGAAATCCACTCAAGAACGGTTTGCACTGAAAATTCTTCTTGATCGTCCAAAAGCTAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000031410.14 ENSMUST00000111783.8 ENSMUST00000196315.2 |
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| CDS GCA 72 bp | AGGTCCTGGATCCTCATGTTTGCCAGCTGCTCGGCGTaGGCCTGCTGGATCCCCGCAACCACCGCCTTATCC | + |
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Preference number: 6 (lower is better) Translates to: RSWILMFASCSA*ACWIPATTALS Trigger: GGATAAGGCGGTGGTTGCGGGGATCCAGCAGGCGCACGCCGAGCAGCTGGCAAACATGAGGATCCAGGACCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000031410.14 ENSMUST00000111782.8 ENSMUST00000111783.8 ENSMUST00000111786.9 |
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| CDS GCA 72 bp | CTGACCTTGAGGTCCTGGATCCTCATGTTTGCCAGCTaGTCGGCGTGCGCCTGCTGGATCCCCGCAACCACC | + |
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Preference number: 6 (lower is better) Translates to: LTLRSWILMFAS*SACACWIPATT Trigger: GGTGGTTGCGGGGATCCAGCAGGCGCACGCCGAGCAGCTGGCAAACATGAGGATCCAGGACCTCAAGGTCAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000031410.14 ENSMUST00000111782.8 ENSMUST00000111783.8 ENSMUST00000111786.9 |
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| CDS CCA 72 bp | ACAGAGTGCAGGGGTTTGAGGCTGACCTTGAGGTCCTaGATCCTCATGTTTGCCAGCTGCTCGGCGTGCGCC | + |
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Preference number: 6 (lower is better) Translates to: TECRGLRLTLRS*ILMFASCSACA Trigger: GGCGCACGCCGAGCAGCTGGCAAACATGAGGATCCAGGACCTCAAGGTCAGCCTCAAACCCCTGCACTCTGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000031410.14 ENSMUST00000111782.8 ENSMUST00000111783.8 ENSMUST00000111786.9 |
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| CDS CCA 72 bp | TGGATCCCCGCAACCACCGCCTTATCCATCATCAGCTaGGCAGAGGGTAGCACATTATCCAGGGCCTCTGTC | + |
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Preference number: 6 (lower is better) Translates to: WIPATTALSIIS*AEGSTLSRASV Trigger: GACAGAGGCCCTGGATAATGTGCTACCCTCTGCCCAGCTGATGATGGATAAGGCGGTGGTTGCGGGGATCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000031410.14 ENSMUST00000111782.8 ENSMUST00000111783.8 ENSMUST00000111786.9 |
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| CDS CAA 72 bp | CTCTGCAGAGCATCCCTCAGGAGCTTGCATTCGCGGTaGTACTTCCAGGCCTCCTGCATTACCTCATTCAGC | + |
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Preference number: 6 (lower is better) Translates to: LCRASLRSLHSR*YFQASCITSFS Trigger: GCTGAATGAGGTAATGCAGGAGGCCTGGAAGTACAACCGCGAATGCAAGCTCCTGAGGGATGCTCTGCAGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000031410.14 ENSMUST00000111782.8 ENSMUST00000111783.8 ENSMUST00000111786.9 ENSMUST00000152270.8 |
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| CDS CAA 90 bp | CCACGGCCATTCCAGCTAAAACTCTGCAGAGCATCCCTCAGGAGCTaGCATTCGCGGTTGTACTTCCAGGCCTCCTGCATTACCTCATTC | + |
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Preference number: 6 (lower is better) Translates to: PRPFQLKLCRASLRS*HSRLYFQASCITSF Trigger: GAATGAGGTAATGCAGGAGGCCTGGAAGTACAACCGCGAATGCAAGCTCCTGAGGGATGCTCTGCAGAGTTTTAGCTGGAATGGCCGTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000031410.14 ENSMUST00000111782.8 ENSMUST00000111783.8 ENSMUST00000111786.9 ENSMUST00000152270.8 |
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| CDS GCA 72 bp | GAGGTGGAGGCAGGAGGTCAGAAGATCGAGGACATCTaGAGCTACAGAATAAGTTCAAGGCTGGCCTGGGAT | + |
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Preference number: 6 (lower is better) Translates to: EVEAGGQKIEDI*SYRISSRLAWD Trigger: ATCCCAGGCCAGCCTTGAACTTATTCTGTAGCTGCAGATGTCCTCGATCTTCTGACCTCCTGCCTCCACCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151352.3 |
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| CDS GCA 72 bp | TTCACAGGGGCGTCCTGCTTTGTTACTTGGCTGGCTTaGTTCTCTGTAAAGTGCCGGTGCTGGCTGATTCTG | + |
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Preference number: 6 (lower is better) Translates to: FTGASCFVTWLA*FSVKCRCWLIL Trigger: CAGAATCAGCCAGCACCGGCACTTTACAGAGAAGCAAGCCAGCCAAGTAACAAAGCAGGACGCCCCTGTGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196315.2 |
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| CDS CAA 72 bp | TTTCACAGGGGCGTCCTGCTTTGTTACTTGGCTGGCTaGCTTCTCTGTAAAGTGCCGGTGCTGGCTGATTCT | + |
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Preference number: 6 (lower is better) Translates to: FHRGVLLCYLAG*LLCKVPVLADS Trigger: AGAATCAGCCAGCACCGGCACTTTACAGAGAAGCAAGCCAGCCAAGTAACAAAGCAGGACGCCCCTGTGAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196315.2 |
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| CDS GCA 72 bp | TTATCTGTGAATCCACGGCCATTCCAGCTAAAACTCTaGAGAGCATCCCTCAGGAGCTTGCATTCGCGGTTG | + |
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Preference number: 6 (lower is better) Translates to: LSVNPRPFQLKL*RASLRSLHSRL Trigger: CAACCGCGAATGCAAGCTCCTGAGGGATGCTCTGCAGAGTTTTAGCTGGAATGGCCGTGGATTCACAGATAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000031410.14 ENSMUST00000111782.8 ENSMUST00000111783.8 ENSMUST00000111786.9 ENSMUST00000152270.8 |
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| CDS CCA 72 bp | TCACATAATTTCACAGGGGCGTCCTGCTTTGTTACTTaGCTGGCTTGCTTCTCTGTAAAGTGCCGGTGCTGG | + |
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Preference number: 6 (lower is better) Translates to: SHNFTGASCFVT*LACFSVKCRCW Trigger: CCAGCACCGGCACTTTACAGAGAAGCAAGCCAGCCAAGTAACAAAGCAGGACGCCCCTGTGAAATTATGTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196315.2 |
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| CDS TCA 72 bp | CTCCTTTACCAGCCTGGGGGAGGATACACTGGGCAATaGCATCTCGAAGCTTTTCCAAGGCAACATTTGAGT | + |
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Preference number: 6 (lower is better) Translates to: LLYQPGGGYTGQ*HLEAFPRQHLS Trigger: ACTCAAATGTTGCCTTGGAAAAGCTTCGAGATGTCATTGCCCAGTGTATCCTCCCCCAGGCTGGTAAAGGAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000031410.14 ENSMUST00000111786.9 ENSMUST00000152270.8 |
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| CDS GCA 72 bp | AAGGGTCTGCTCTTCGATCACCTGCTTTACCACCTCTaGCAGCTTCAATCGGTCAACTTTATCTGTGAATCC | + |
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Preference number: 6 (lower is better) Translates to: KGLLFDHLLYHL*QLQSVNFICES Trigger: GGATTCACAGATAAAGTTGACCGATTGAAGCTGGCAGAGGTGGTAAAGCAGGTGATCGAAGAGCAGACCCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000031410.14 ENSMUST00000111782.8 ENSMUST00000111783.8 ENSMUST00000111786.9 ENSMUST00000152270.8 |
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| CDS CCA 72 bp | AGCTTCCTCACAACATCTTTAGCCATCTCTGAGATCTaGCTCCACTCTTCTTCTGGGAACTCGAAACTTCCT | + |
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Preference number: 6 (lower is better) Translates to: SFLTTSLAISEI*LHSSSGNSKLP Trigger: AGGAAGTTTCGAGTTCCCAGAAGAAGAGTGGAGCCAGATCTCAGAGATGGCTAAAGATGTTGTGAGGAAGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000031410.14 ENSMUST00000111782.8 ENSMUST00000111783.8 ENSMUST00000111786.9 |
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| CDS CAA 72 bp | TCCAACACTCCCTCGATTGTGAGTCTTTCCTCTGGTTaGACCTTCAGAAGCTTCCTCACAACATCTTTAGCC | + |
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Preference number: 6 (lower is better) Translates to: SNTPSIVSLSSG*TFRSFLTTSLA Trigger: GGCTAAAGATGTTGTGAGGAAGCTTCTGAAGGTCAAACCAGAGGAAAGACTCACAATCGAGGGAGTGTTGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000031410.14 ENSMUST00000111782.8 ENSMUST00000111783.8 ENSMUST00000111786.9 |
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| CDS TCA 72 bp | GGGAACTGTACACTGTTAGCAAACACTTCAATAATCTaGACTATGTTGGGGTGTGTGGCACACATCATGTGC | + |
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Preference number: 6 (lower is better) Translates to: GNCTLLANTSII*TMLGCVAHIMC Trigger: GCACATGATGTGTGCCACACACCCCAACATAGTTCAGATTATTGAAGTGTTTGCTAACAGTGTACAGTTCCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031410.14 ENSMUST00000111783.8 ENSMUST00000196315.2 |
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| CDS TCA 72 bp | ATTACAATTAAGAGTCGAGCCCTGGGGCTGGACTCATaGGGGAACTGTACACTGTTAGCAAACACTTCAATA | + |
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Preference number: 6 (lower is better) Translates to: ITIKSRALGLDS*GNCTLLANTSI Trigger: TATTGAAGTGTTTGCTAACAGTGTACAGTTCCCTCATGAGTCCAGCCCCAGGGCTCGACTCTTAATTGTAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000031410.14 ENSMUST00000111783.8 ENSMUST00000196315.2 |
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| CDS TCA 72 bp | GGCAATGACATCTCGAAGCTTTTCCAAGGCAACATTTaGGTCCTCAGTTCCATTCTCATGGTCGTGTATATA | + |
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Preference number: 6 (lower is better) Translates to: GNDISKLFQGNI*VLSSILMVVYI Trigger: TATATACACGACCATGAGAATGGAACTGAGGACTCAAATGTTGCCTTGGAAAAGCTTCGAGATGTCATTGCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000031410.14 ENSMUST00000111782.8 ENSMUST00000111783.8 ENSMUST00000111786.9 ENSMUST00000152270.8 |
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| CDS CAA 72 bp | TGGACGATCAAGAAGAATTTTCAGTGCAAACCGTTCTaGAGTGGATTTCTTCACACAGACTCTAACTGGACC | + |
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Preference number: 6 (lower is better) Translates to: WTIKKNFQCKPF*SGFLHTDSNWT Trigger: GGTCCAGTTAGAGTCTGTGTGAAGAAATCCACTCAAGAACGGTTTGCACTGAAAATTCTTCTTGATCGTCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031410.14 ENSMUST00000111783.8 ENSMUST00000196315.2 |
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| CDS CAA 90 bp | TCTAGCTTTTGGACGATCAAGAAGAATTTTCAGTGCAAACCGTTCTaGAGTGGATTTCTTCACACAGACTCTAACTGGACCACTAATTCC | + |
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Preference number: 6 (lower is better) Translates to: SSFWTIKKNFQCKPF*SGFLHTDSNWTTNS Trigger: GGAATTAGTGGTCCAGTTAGAGTCTGTGTGAAGAAATCCACTCAAGAACGGTTTGCACTGAAAATTCTTCTTGATCGTCCAAAAGCTAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000031410.14 ENSMUST00000111783.8 ENSMUST00000196315.2 |
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