Pregenerated sensors for MAPKAPK2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000016528Ensembl transcript IDs: ENSMUST00000016672.11, ENSMUST00000188459.4
Found 100 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TGTAGCCCCGCCTTCCCTAGACCCTCCAATGCCCAGTCGCTGGCATaGATCCAGGCATACACACACATGCACACACATGTGCTGCTCTGT | + |
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Preference number: 1 (lower is better) Translates to: CSPAFPRPSNAQSLA*IQAYTHMHTHVLLC Trigger: ACAGAGCAGCACATGTGTGTGCATGTGTGTGTATGCCTGGATCCATGCCAGCGACTGGGCATTGGAGGGTCTAGGGAAGGCGGGGCTACA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| 3UTR GCA 90 bp | GTTGGCAGGTACCCCAGAGATCAGGGGAGATGCATGAAATGCAACTaGCTTTCCAGGCATAGAACCTTCCCAGGCTCACCGTGGGAGTGG | + |
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Preference number: 1 (lower is better) Translates to: VGRYPRDQGRCMKCN*LSRHRTFPGSPWEW Trigger: CCACTCCCACGGTGAGCCTGGGAAGGTTCTATGCCTGGAAAGGCAGTTGCATTTCATGCATCTCCCCTGATCTCTGGGGTACCTGCCAAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| 3UTR TCA 90 bp | TACACACACATGCACACACATGTGCTGCTCTGTTGTGCACACTGGTaGTGTCTAAGGGCTTCAGCGGGAGGCAAGGGCCACCTACTGCCA | + |
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Preference number: 1 (lower is better) Translates to: YTHMHTHVLLCCAHW*CLRASAGGKGHLLP Trigger: TGGCAGTAGGTGGCCCTTGCCTCCCGCTGAAGCCCTTAGACATCACCAGTGTGCACAACAGAGCAGCACATGTGTGTGCATGTGTGTGTA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| 3UTR GCA 90 bp | CCTTGTCGAAGGGAGGTTGGCAGGTACCCCAGAGATCAGGGGAGATaGATGAAATGCAACTGCCTTTCCAGGCATAGAACCTTCCCAGGC | + |
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Preference number: 1 (lower is better) Translates to: PCRREVGRYPRDQGR*MKCNCLSRHRTFPG Trigger: GCCTGGGAAGGTTCTATGCCTGGAAAGGCAGTTGCATTTCATGCATCTCCCCTGATCTCTGGGGTACCTGCCAACCTCCCTTCGACAAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| 3UTR CCA 90 bp | TCAAGACATCTTTGGTGCGAAGACTGTCCCATCCACCAGACCACATaGTGGAAATCCAGGAAGACCACACGTGGTCCTGCCCTTGTCGAA | + |
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Preference number: 1 (lower is better) Translates to: SRHLWCEDCPIHQTT*WKSRKTTRGPALVE Trigger: TTCGACAAGGGCAGGACCACGTGTGGTCTTCCTGGATTTCCACCATGTGGTCTGGTGGATGGGACAGTCTTCGCACCAAAGATGTCTTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| 3UTR TCA 90 bp | AGGCATAGAACCTTCCCAGGCTCACCGTGGGAGTGGACAGCCCATTaGGAAATGGCTAAAAATTTCAGAGAACTCGACAAGAGTGGGTTA | + |
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Preference number: 1 (lower is better) Translates to: RHRTFPGSPWEWTAH*EMAKNFRELDKSGL Trigger: TAACCCACTCTTGTCGAGTTCTCTGAAATTTTTAGCCATTTCTCAATGGGCTGTCCACTCCCACGGTGAGCCTGGGAAGGTTCTATGCCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| 3UTR-3UTR GCA 90 bp | GTGGTCCTGCCCTTGTCGAAGGGAGGTTGGCAGGTACCCCAGAGATCAGGGGAGCCTGATGGCTGTCAGTaGCCCCCAACCCCTCACTGC | + |
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Preference number: 2 (lower is better) Translates to: VVLPLSKGGWQVPQRSGEPDGCQ*PPTPHC Trigger: GCAGTGAGGGGTTGGGGGGCACTGACAGCCATCAGG...CTCCCCTGATCTCTGGGGTACCTGCCAACCTCCCTTCGACAAGGGCAGGACCAC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| 3UTR-3UTR GCA 90 bp | GGTCCTGCCCTTGTCGAAGGGAGGTTGGCAGGTACCCCAGAGATCAGGGGAGATGGCTCAGGAGCACCTTaGCCCTCACACATCCTCCAG | + |
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Preference number: 2 (lower is better) Translates to: GPALVEGRLAGTPEIRGDGSGAP*PSHILQ Trigger: CTGGAGGATGTGTGAGGGGCAAGGTGCTCCTGAGCC...ATCTCCCCTGATCTCTGGGGTACCTGCCAACCTCCCTTCGACAAGGGCAGGACC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| 3UTR-3UTR GCA 90 bp | GGTCCTGCCCTTGTCGAAGGGAGGTTGGCAGGTACCCCAGAGATCAGGGGAGATGCAAGGGCCACCTACTaGCACTCTGCTGCCTTCTCC | + |
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Preference number: 2 (lower is better) Translates to: GPALVEGRLAGTPEIRGDARATY*HSAAFS Trigger: GGAGAAGGCAGCAGAGTGGCAGTAGGTGGCCCTTGC...ATCTCCCCTGATCTCTGGGGTACCTGCCAACCTCCCTTCGACAAGGGCAGGACC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| 3UTR-3UTR TCA 90 bp | GTGGTCCTGCCCTTGTCGAAGGGAGGTTGGCAGGTACCCCAGAGATCAGGGGAGTGTTGTGCACACTGGTaGTGTCTAAGGGCTTCAGCG | + |
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Preference number: 2 (lower is better) Translates to: VVLPLSKGGWQVPQRSGECCAHW*CLRASA Trigger: CGCTGAAGCCCTTAGACATCACCAGTGTGCACAACA...CTCCCCTGATCTCTGGGGTACCTGCCAACCTCCCTTCGACAAGGGCAGGACCAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| 3UTR-3UTR CCA 90 bp | GTGGTCCTGCCCTTGTCGAAGGGAGGTTGGCAGGTACCCCAGAGATCAGGGGAGCTGCTGCCTTCTCCCTaGAACTCCCAGATTCTAGAG | + |
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Preference number: 2 (lower is better) Translates to: VVLPLSKGGWQVPQRSGELLPSP*NSQILE Trigger: CTCTAGAATCTGGGAGTTCCAGGGAGAAGGCAGCAG...CTCCCCTGATCTCTGGGGTACCTGCCAACCTCCCTTCGACAAGGGCAGGACCAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| 3UTR-3UTR GCA 90 bp | CCACCAGACCACATGGTGGAAATCCAGGAAGACCACACGTGGTCCTGCCCTTGTCACCTACTGCCACTCTaGTGCCTTCTCCCTGGAACT | + |
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Preference number: 2 (lower is better) Translates to: PPDHMVEIQEDHTWSCPCHLLPL*CLLPGT Trigger: AGTTCCAGGGAGAAGGCAGCAGAGTGGCAGTAGGTG...ACAAGGGCAGGACCACGTGTGGTCTTCCTGGATTTCCACCATGTGGTCTGGTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| 3UTR CAA 90 bp | ATGGATCCAGGCATACACACACATGCACACACATGTGCTGCTCTGTaGTGCACACTGGTGATGTCTAAGGGCTTCAGCGGGAGGCAAGGG | + |
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Preference number: 2 (lower is better) Translates to: MDPGIHTHAHTCAAL*CTLVMSKGFSGRQG Trigger: CCCTTGCCTCCCGCTGAAGCCCTTAGACATCACCAGTGTGCACAACAGAGCAGCACATGTGTGTGCATGTGTGTGTATGCCTGGATCCAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| 3UTR-3UTR GCA 90 bp | AGTGGGCAGGGACAGAGTCAAGACATCTTTGGTGCGAAGACTGTCCCATCCACCTGCACACACATGTGCTaGTCTGTTGTGCACACTGGT | + |
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Preference number: 2 (lower is better) Translates to: SGQGQSQDIFGAKTVPSTCTHMC*SVVHTG Trigger: ACCAGTGTGCACAACAGAGCAGCACATGTGTGTGCA...GGTGGATGGGACAGTCTTCGCACCAAAGATGTCTTGACTCTGTCCCTGCCCACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| 3UTR-3UTR CCA 90 bp | AGTGGGCAGGGACAGAGTCAAGACATCTTTGGTGCGAAGACTGTCCCATCCACCCTTCCACAACACCTGTaGATAAGCCTCAGCCTTTGT | + |
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Preference number: 2 (lower is better) Translates to: SGQGQSQDIFGAKTVPSTLPQHL*ISLSLC Trigger: ACAAAGGCTGAGGCTTATCCACAGGTGTTGTGGAAG...GGTGGATGGGACAGTCTTCGCACCAAAGATGTCTTGACTCTGTCCCTGCCCACT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| 3UTR-3UTR GCA 90 bp | GAACCTTCCCAGGCTCACCGTGGGAGTGGACAGCCCATTGAGAAATGGCTAAAATGTGCTGCTCTGTTGTaGACACTGGTGATGTCTAAG | + |
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Preference number: 2 (lower is better) Translates to: EPSQAHRGSGQPIEKWLKCAALL*TLVMSK Trigger: CTTAGACATCACCAGTGTGCACAACAGAGCAGCACA...TTTTAGCCATTTCTCAATGGGCTGTCCACTCCCACGGTGAGCCTGGGAAGGTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| 3UTR-3UTR GCA 90 bp | TACAAAACGAGAGTTTACAACAGTCTGAGTGTTGAACACACCATCAAAGACATGCAGACATCTGGGCCCTaGCCCAGGCCCAGGGATGCC | + |
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Preference number: 2 (lower is better) Translates to: YKTRVYNSLSVEHTIKDMQTSGP*PRPRDA Trigger: GGCATCCCTGGGCCTGGGGCAGGGCCCAGATGTCTG...CATGTCTTTGATGGTGTGTTCAACACTCAGACTGTTGTAAACTCTCGTTTTGTA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| 3UTR-3UTR CCA 90 bp | CATCTTTGGTGCGAAGACTGTCCCATCCACCAGACCACATGGTGGAAATCCAGGAACAGGAGGCAGCATTaGGCAACTTGTGTCTCTTTG | + |
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Preference number: 2 (lower is better) Translates to: HLWCEDCPIHQTTWWKSRNRRQH*ATCVSL Trigger: CAAAGAGACACAAGTTGCCCAATGCTGCCTCCTGTT...CCTGGATTTCCACCATGTGGTCTGGTGGATGGGACAGTCTTCGCACCAAAGATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| 3UTR-3UTR TCA 90 bp | AGTGGGCAGGGACAGAGTCAAGACATCTTTGGTGCGAAGACTGTCCCATCCACCGAGTGGACAGCCCATTaGGAAATGGCTAAAAATTTC | + |
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Preference number: 2 (lower is better) Translates to: SGQGQSQDIFGAKTVPSTEWTAH*EMAKNF Trigger: GAAATTTTTAGCCATTTCTCAATGGGCTGTCCACTC...GGTGGATGGGACAGTCTTCGCACCAAAGATGTCTTGACTCTGTCCCTGCCCACT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| 3UTR-3UTR GCA 90 bp | TTCAGAGAACTCGACAAGAGTGGGTTAATCGTGGCAAGAAGGGCAAGCAGAGGCACATGCACACACATGTaGTGCTCTGTTGTGCACACT | + |
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Preference number: 2 (lower is better) Translates to: FRELDKSGLIVARRASRGTCTHM*CSVVHT Trigger: AGTGTGCACAACAGAGCAGCACATGTGTGTGCATGT...GCCTCTGCTTGCCCTTCTTGCCACGATTAACCCACTCTTGTCGAGTTCTCTGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| 3UTR-3UTR GCA 90 bp | CCACCAGACCACATGGTGGAAATCCAGGAAGACCACACGTGGTCCTGCCCTTGTAAATTACAGATAAAATaGAAAGGAGCAACGGGCTCA | + |
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Preference number: 2 (lower is better) Translates to: PPDHMVEIQEDHTWSCPCKLQIK*KGATGS Trigger: TGAGCCCGTTGCTCCTTTGCATTTTATCTGTAATTT...ACAAGGGCAGGACCACGTGTGGTCTTCCTGGATTTCCACCATGTGGTCTGGTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| 3UTR-3UTR CCA 90 bp | TACAAAACGAGAGTTTACAACAGTCTGAGTGTTGAACACACCATCAAAGACATGCAGCCCATTGAGAAATaGCTAAAAATTTCAGAGAAC | + |
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Preference number: 2 (lower is better) Translates to: YKTRVYNSLSVEHTIKDMQPIEK*LKISEN Trigger: GTTCTCTGAAATTTTTAGCCATTTCTCAATGGGCTG...CATGTCTTTGATGGTGTGTTCAACACTCAGACTGTTGTAAACTCTCGTTTTGTA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| 3UTR-3UTR CAA 90 bp | GTGCCTCAGGGATCTGGGACCAGCAGGGAAAGGGGTCCTGAGGGGACCCAGTCCGGGCTCAGGAGCACCTaGCCCCTCACACATCCTCCA | + |
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Preference number: 3 (lower is better) Translates to: VPQGSGTSRERGPEGTQSGLRST*PLTHPP Trigger: TGGAGGATGTGTGAGGGGCAAGGTGCTCCTGAGCCC...GGACTGGGTCCCCTCAGGACCCCTTTCCCTGCTGGTCCCAGATCCCTGAGGCAC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| 3UTR GCA 72 bp | ATAAAATGCAAAGGAGCAACGGGCTCAGGAGCACCTTaGCCCTCACACATCCTCCAGCCCCCACCTCGGGGG | + |
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Preference number: 3 (lower is better) Translates to: IKCKGATGSGAP*PSHILQPPPRG Trigger: CCCCCGAGGTGGGGGCTGGAGGATGTGTGAGGGGCAAGGTGCTCCTGAGCCCGTTGCTCCTTTGCATTTTAT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| 3UTR GCA 72 bp | GCAAGAAGGGCAAGCAGAGGCTACTCAGTAGATCAGTaGCTCAGGGATCTGGGACCAGCAGGGAAAGGGGTC | + |
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Preference number: 3 (lower is better) Translates to: ARRASRGYSVDQ*LRDLGPAGKGV Trigger: GACCCCTTTCCCTGCTGGTCCCAGATCCCTGAGGCACTGATCTACTGAGTAGCCTCTGCTTGCCCTTCTTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| 3UTR GCA 72 bp | CACATGGTGGAAATCCAGGAAGACCACACGTGGTCCTaGCCTTGTCGAAGGGAGGTTGGCAGGTACCCCAGA | + |
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Preference number: 3 (lower is better) Translates to: HMVEIQEDHTWS*PCRREVGRYPR Trigger: TCTGGGGTACCTGCCAACCTCCCTTCGACAAGGGCAGGACCACGTGTGGTCTTCCTGGATTTCCACCATGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| 3UTR CCA 72 bp | AGACCACACGTGGTCCTGCCCTTGTCGAAGGGAGGTTaGCAGGTACCCCAGAGATCAGGGGAGATGCATGAA | + |
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Preference number: 3 (lower is better) Translates to: RPHVVLPLSKGG*QVPQRSGEMHE Trigger: TTCATGCATCTCCCCTGATCTCTGGGGTACCTGCCAACCTCCCTTCGACAAGGGCAGGACCACGTGTGGTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| 3UTR CCA 72 bp | CCAGACCACATGGTGGAAATCCAGGAAGACCACACGTaGTCCTGCCCTTGTCGAAGGGAGGTTGGCAGGTAC | + |
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Preference number: 3 (lower is better) Translates to: PDHMVEIQEDHT*SCPCRREVGRY Trigger: GTACCTGCCAACCTCCCTTCGACAAGGGCAGGACCACGTGTGGTCTTCCTGGATTTCCACCATGTGGTCTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| 3UTR-3UTR CAA 90 bp | GGTCCTGCCCTTGTCGAAGGGAGGTTGGCAGGTACCCCAGAGATCAGGGGAGATACATGTGCTGCTCTGTaGTGCACACTGGTGATGTCT | + |
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Preference number: 3 (lower is better) Translates to: GPALVEGRLAGTPEIRGDTCAAL*CTLVMS Trigger: AGACATCACCAGTGTGCACAACAGAGCAGCACATGT...ATCTCCCCTGATCTCTGGGGTACCTGCCAACCTCCCTTCGACAAGGGCAGGACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| 3UTR TCA 72 bp | ATGCACACACATGTGCTGCTCTGTTGTGCACACTGGTaGTGTCTAAGGGCTTCAGCGGGAGGCAAGGGCCAC | + |
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Preference number: 3 (lower is better) Translates to: MHTHVLLCCAHW*CLRASAGGKGH Trigger: GTGGCCCTTGCCTCCCGCTGAAGCCCTTAGACATCACCAGTGTGCACAACAGAGCAGCACATGTGTGTGCAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| 3UTR CCA 72 bp | GCCTTCCCTAGACCCTCCAATGCCCAGTCGCTGGCATaGATCCAGGCATACACACACATGCACACACATGTG | + |
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Preference number: 3 (lower is better) Translates to: AFPRPSNAQSLA*IQAYTHMHTHV Trigger: CACATGTGTGTGCATGTGTGTGTATGCCTGGATCCATGCCAGCGACTGGGCATTGGAGGGTCTAGGGAAGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| 3UTR CCA 72 bp | TGGTGCGAAGACTGTCCCATCCACCAGACCACATGGTaGAAATCCAGGAAGACCACACGTGGTCCTGCCCTT | + |
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Preference number: 3 (lower is better) Translates to: WCEDCPIHQTTW*KSRKTTRGPAL Trigger: AAGGGCAGGACCACGTGTGGTCTTCCTGGATTTCCACCATGTGGTCTGGTGGATGGGACAGTCTTCGCACCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| 3UTR-3UTR CAA 90 bp | GGTCCTGCCCTTGTCGAAGGGAGGTTGGCAGGTACCCCAGAGATCAGGGGAGATATTCATGTAGAGTTATaGCTTGTCCTCCAGTGGGTG | + |
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Preference number: 3 (lower is better) Translates to: GPALVEGRLAGTPEIRGDIHVEL*LVLQWV Trigger: CACCCACTGGAGGACAAGCAATAACTCTACATGAAT...ATCTCCCCTGATCTCTGGGGTACCTGCCAACCTCCCTTCGACAAGGGCAGGACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| 3UTR GCA 72 bp | TACCCCAGAGATCAGGGGAGATGCATGAAATGCAACTaGCTTTCCAGGCATAGAACCTTCCCAGGCTCACCG | + |
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Preference number: 3 (lower is better) Translates to: YPRDQGRCMKCN*LSRHRTFPGSP Trigger: CGGTGAGCCTGGGAAGGTTCTATGCCTGGAAAGGCAGTTGCATTTCATGCATCTCCCCTGATCTCTGGGGTA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| 3UTR GCA 72 bp | AGGGAGGTTGGCAGGTACCCCAGAGATCAGGGGAGATaGATGAAATGCAACTGCCTTTCCAGGCATAGAACC | + |
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Preference number: 3 (lower is better) Translates to: REVGRYPRDQGR*MKCNCLSRHRT Trigger: GGTTCTATGCCTGGAAAGGCAGTTGCATTTCATGCATCTCCCCTGATCTCTGGGGTACCTGCCAACCTCCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| 3UTR TCA 72 bp | ACCTTCCCAGGCTCACCGTGGGAGTGGACAGCCCATTaGGAAATGGCTAAAAATTTCAGAGAACTCGACAAG | + |
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Preference number: 3 (lower is better) Translates to: TFPGSPWEWTAH*EMAKNFRELDK Trigger: CTTGTCGAGTTCTCTGAAATTTTTAGCCATTTCTCAATGGGCTGTCCACTCCCACGGTGAGCCTGGGAAGGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| CDS-3UTR GCA 90 bp | CCACCAGACCACATGGTGGAAATCCAGGAAGACCACACGTGGTCCTGCCCTTGTGCAGCTCCACCTCTCTaGGCGCCTTCGGACAGTCCT | + |
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Preference number: 4 (lower is better) Translates to: PPDHMVEIQEDHTWSCPCAAPPL*APSDSP Trigger: AGGACTGTCCGAAGGCGCGCAGAGAGGTGGAGCTGC...ACAAGGGCAGGACCACGTGTGGTCTTCCTGGATTTCCACCATGTGGTCTGGTGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| CDS-3UTR CCA 90 bp | GAACCTTCCCAGGCTCACCGTGGGAGTGGACAGCCCATTGAGAAATGGCTAAAAGACTTGACGTGGAACTaGGGGAACGGCGGCGGCGGC | + |
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Preference number: 4 (lower is better) Translates to: EPSQAHRGSGQPIEKWLKDLTWN*GNGGGG Trigger: GCCGCCGCCGCCGTTCCCCCAGTTCCACGTCAAGTC...TTTTAGCCATTTCTCAATGGGCTGTCCACTCCCACGGTGAGCCTGGGAAGGTTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| CDS-3UTR CCA 90 bp | CCACCAGACCACATGGTGGAAATCCAGGAAGACCACACGTGGTCCTGCCCTTGTGATGTGCACAATGTGTaGGCACTGGGAGGCCCTCCA | + |
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Preference number: 4 (lower is better) Translates to: PPDHMVEIQEDHTWSCPCDVHNV*ALGGPP Trigger: TGGAGGGCCTCCCAGTGCCCACACATTGTGCACATC...ACAAGGGCAGGACCACGTGTGGTCTTCCTGGATTTCCACCATGTGGTCTGGTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| CDS-3UTR CCA 90 bp | CAGATTCTAGAGCCAGTGAGGACCCCACGTTACAGTGGGAGGCCAGAGGAGACAACGGCTGGTGTGCAGTaGAGTCTGAGGGACCTTCGT | + |
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Preference number: 4 (lower is better) Translates to: QILEPVRTPRYSGRPEETTAGVQ*SLRDLR Trigger: ACGAAGGTCCCTCAGACTCCACTGCACACCAGCCGT...TGTCTCCTCTGGCCTCCCACTGTAACGTGGGGTCCTCACTGGCTCTAGAATCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| 3UTR CAA 72 bp | GGTGGAAATCCAGGAAGACCACACGTGGTCCTGCCCTaGTCGAAGGGAGGTTGGCAGGTACCCCAGAGATCA | + |
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Preference number: 4 (lower is better) Translates to: GGNPGRPHVVLP*SKGGWQVPQRS Trigger: TGATCTCTGGGGTACCTGCCAACCTCCCTTCGACAAGGGCAGGACCACGTGTGGTCTTCCTGGATTTCCACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| CDS-3UTR CCA 90 bp | GGCGCCACGCAGCCCAAGAGAACAGGAGGCAGCATTGGGCAACTTGTGTCTCTTTCATGCCCGGAGAGATaGCAAGGCCGTGATTGGAAT | + |
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Preference number: 4 (lower is better) Translates to: GATQPKRTGGSIGQLVSLSCPER*QGRDWN Trigger: ATTCCAATCACGGCCTTGCCATCTCTCCGGGCATGA...AAGAGACACAAGTTGCCCAATGCTGCCTCCTGTTCTCTTGGGCTGCGTGGCGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| CDS-3UTR CCA 90 bp | GTGGTCCTGCCCTTGTCGAAGGGAGGTTGGCAGGTACCCCAGAGATCAGGGGAGGTGTATAACACGGAGTaGTCAAAGAGTTGTGACTGG | + |
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Preference number: 4 (lower is better) Translates to: VVLPLSKGGWQVPQRSGEVYNTE*SKSCDW Trigger: CCAGTCACAACTCTTTGACCACTCCGTGTTATACAC...CTCCCCTGATCTCTGGGGTACCTGCCAACCTCCCTTCGACAAGGGCAGGACCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| 3UTR CAA 72 bp | AGGTGGCTAGTGGGCAGGGACAGAGTCAAGACATCTTaGGTGCGAAGACTGTCCCATCCACCAGACCACATG | + |
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Preference number: 4 (lower is better) Translates to: RWLVGRDRVKTS*VRRLSHPPDHM Trigger: CATGTGGTCTGGTGGATGGGACAGTCTTCGCACCAAAGATGTCTTGACTCTGTCCCTGCCCACTAGCCACCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| CDS-3UTR GCA 90 bp | GTGGTCCTGCCCTTGTCGAAGGGAGGTTGGCAGGTACCCCAGAGATCAGGGGAGTTTAGGGCGAATTTTTaGTGGGTTCTCTTGTCGAAG | + |
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Preference number: 4 (lower is better) Translates to: VVLPLSKGGWQVPQRSGEFRANF*WVLLSK Trigger: CTTCGACAAGAGAACCCAGCAAAAATTCGCCCTAAA...CTCCCCTGATCTCTGGGGTACCTGCCAACCTCCCTTCGACAAGGGCAGGACCAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| 3UTR CAA 72 bp | GGCATACACACACATGCACACACATGTGCTGCTCTGTaGTGCACACTGGTGATGTCTAAGGGCTTCAGCGGG | + |
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Preference number: 4 (lower is better) Translates to: GIHTHAHTCAAL*CTLVMSKGFSG Trigger: CCCGCTGAAGCCCTTAGACATCACCAGTGTGCACAACAGAGCAGCACATGTGTGTGCATGTGTGTGTATGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| CDS-3UTR TCA 90 bp | TTAATCGTGGCAAGAAGGGCAAGCAGAGGCTACTCAGTAGATCAGTGCCTCAGGACGCCTCTCTTTCTGTaGATGCCTGGTCTCCTCGGT | + |
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Preference number: 4 (lower is better) Translates to: LIVARRASRGYSVDQCLRTPLFL*MPGLLG Trigger: ACCGAGGAGACCAGGCATTCACAGAAAGAGAGGCGT...CCTGAGGCACTGATCTACTGAGTAGCCTCTGCTTGCCCTTCTTGCCACGATTAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| CDS-3UTR TCA 90 bp | TTAATCGTGGCAAGAAGGGCAAGCAGAGGCTACTCAGTAGATCAGTGCCTCAGGGTGTGCAGTGGAGTCTaGGGGACCTTCGTAGATTGC | + |
|
Preference number: 4 (lower is better) Translates to: LIVARRASRGYSVDQCLRVCSGV*GTFVDC Trigger: GCAATCTACGAAGGTCCCTCAGACTCCACTGCACAC...CCTGAGGCACTGATCTACTGAGTAGCCTCTGCTTGCCCTTCTTGCCACGATTAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
||
| CDS-3UTR CCA 90 bp | AGTGGGCAGGGACAGAGTCAAGACATCTTTGGTGCGAAGACTGTCCCATCCACCTGGTCTCCTCGGTCCTaGATTCGACTAAAGAGCTCT | + |
|
Preference number: 4 (lower is better) Translates to: SGQGQSQDIFGAKTVPSTWSPRS*IRLKSS Trigger: AGAGCTCTTTAGTCGAATCCAGGACCGAGGAGACCA...GGTGGATGGGACAGTCTTCGCACCAAAGATGTCTTGACTCTGTCCCTGCCCACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
||
| CDS-3UTR CCA 90 bp | CCACCAGACCACATGGTGGAAATCCAGGAAGACCACACGTGGTCCTGCCCTTGTCGGAGCCACATAGTATaGTGTATAACACGGAGTGGT | + |
|
Preference number: 4 (lower is better) Translates to: PPDHMVEIQEDHTWSCPCRSHIV*CITRSG Trigger: ACCACTCCGTGTTATACACCATACTATGTGGCTCCG...ACAAGGGCAGGACCACGTGTGGTCTTCCTGGATTTCCACCATGTGGTCTGGTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
||
| CDS-3UTR GCA 90 bp | TTCAGAGAACTCGACAAGAGTGGGTTAATCGTGGCAAGAAGGGCAAGCAGAGGCGCAATGTTGATCGAGTaGAGGTACTGGATGGCCTCG | + |
|
Preference number: 4 (lower is better) Translates to: FRELDKSGLIVARRASRGAMLIE*RYWMAS Trigger: CGAGGCCATCCAGTACCTGCACTCGATCAACATTGC...GCCTCTGCTTGCCCTTCTTGCCACGATTAACCCACTCTTGTCGAGTTCTCTGAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
||
| CDS-3UTR CCA 90 bp | CAGATTCTAGAGCCAGTGAGGACCCCACGTTACAGTGGGAGGCCAGAGGAGACAAAGAGTTGTGACTGGTaGTTTCCTTGGCAAAGCCAA | + |
|
Preference number: 4 (lower is better) Translates to: QILEPVRTPRYSGRPEETKSCDW*FPWQSQ Trigger: TTGGCTTTGCCAAGGAAACCACCAGTCACAACTCTT...TGTCTCCTCTGGCCTCCCACTGTAACGTGGGGTCCTCACTGGCTCTAGAATCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
||
| CDS-3UTR TCA 90 bp | AAGACATCTTTGGTGCGAAGACTGTCCCATCCACCAGACCACATGGTGGAAATCCATCGAGACACTCCATaGCAATCAGCAGGCACTTCC | + |
|
Preference number: 4 (lower is better) Translates to: KTSLVRRLSHPPDHMVEIHRDTP*QSAGTS Trigger: GGAAGTGCCTGCTGATTGTCATGGAGTGTCTCGATG...GATTTCCACCATGTGGTCTGGTGGATGGGACAGTCTTCGCACCAAAGATGTCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
||
| CDS-3UTR CCA 90 bp | AGTGGGCAGGGACAGAGTCAAGACATCTTTGGTGCGAAGACTGTCCCATCCACCAGGGCGAATTTTTGCTaGGTTCTCTTGTCGAAGATC | + |
|
Preference number: 4 (lower is better) Translates to: SGQGQSQDIFGAKTVPSTRANFC*VLLSKI Trigger: GATCTTCGACAAGAGAACCCAGCAAAAATTCGCCCT...GGTGGATGGGACAGTCTTCGCACCAAAGATGTCTTGACTCTGTCCCTGCCCACT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
||
| CDS-3UTR TCA 90 bp | AAGACATCTTTGGTGCGAAGACTGTCCCATCCACCAGACCACATGGTGGAAATCGTGGTCAAAGAGTTGTaGCTGGTGGTTTCCTTGGCA | + |
|
Preference number: 4 (lower is better) Translates to: KTSLVRRLSHPPDHMVEIVVKEL*LVVSLA Trigger: TGCCAAGGAAACCACCAGTCACAACTCTTTGACCAC...GATTTCCACCATGTGGTCTGGTGGATGGGACAGTCTTCGCACCAAAGATGTCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
||
| CDS-3UTR CCA 90 bp | CACCGTGGGAGTGGACAGCCCATTGAGAAATGGCTAAAAATTTCAGAGAACTCGGCCTTCGGACAGTCCTaGAGCATCTTTAGGGCGAAT | + |
|
Preference number: 4 (lower is better) Translates to: HRGSGQPIEKWLKISENSAFGQS*SIFRAN Trigger: ATTCGCCCTAAAGATGCTCCAGGACTGTCCGAAGGC...CGAGTTCTCTGAAATTTTTAGCCATTTCTCAATGGGCTGTCCACTCCCACGGTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
||
| CDS-3UTR CCA 90 bp | CATCTTTGGTGCGAAGACTGTCCCATCCACCAGACCACATGGTGGAAATCCAGGTTAGGAAATTCATACTaGCCCATTCGAATACGAGTC | + |
|
Preference number: 4 (lower is better) Translates to: HLWCEDCPIHQTTWWKSRLGNSY*PIRIRV Trigger: GACTCGTATTCGAATGGGCCAGTATGAATTTCCTAA...CCTGGATTTCCACCATGTGGTCTGGTGGATGGGACAGTCTTCGCACCAAAGATG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
||
| CDS-3UTR TCA 90 bp | AAAACGAGAGTTTACAACAGTCTGAGTGTTGAACACACCATCAAAGACATGGGAGGCTTGACATCCCGGTaGGCAATGTTGATCGAGTGC | + |
|
Preference number: 4 (lower is better) Translates to: KTRVYNSLSVEHTIKDMGGLTSR*AMLIEC Trigger: GCACTCGATCAACATTGCTCACCGGGATGTCAAGCC...TCCCATGTCTTTGATGGTGTGTTCAACACTCAGACTGTTGTAAACTCTCGTTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
||
| CDS-3UTR GCA 90 bp | TACAAAACGAGAGTTTACAACAGTCTGAGTGTTGAACACACCATCAAAGACATGGCGTTCTTTCGGATCTaGAGGCCCGACTTGACGTGG | + |
|
Preference number: 4 (lower is better) Translates to: YKTRVYNSLSVEHTIKDMAFFRI*RPDLTW Trigger: CCACGTCAAGTCGGGCCTGCAGATCCGAAAGAACGC...CATGTCTTTGATGGTGTGTTCAACACTCAGACTGTTGTAAACTCTCGTTTTGTA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
||
| CDS-3UTR CCA 90 bp | CACCGTGGGAGTGGACAGCCCATTGAGAAATGGCTAAAAATTTCAGAGAACTCGTGGTCATTCTCTGGGTaGGCTCTGTTTTTAGCAGAT | + |
|
Preference number: 4 (lower is better) Translates to: HRGSGQPIEKWLKISENSWSFSG*ALFLAD Trigger: ATCTGCTAAAAACAGAGCCCACCCAGAGAATGACCA...CGAGTTCTCTGAAATTTTTAGCCATTTCTCAATGGGCTGTCCACTCCCACGGTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
||
| CDS-3UTR TCA 90 bp | TACAAAACGAGAGTTTACAACAGTCTGAGTGTTGAACACACCATCAAAGACATGCTTTCTTCCGCCTCTTaGGAAGCAGAGGGTTGGATG | + |
|
Preference number: 4 (lower is better) Translates to: YKTRVYNSLSVEHTIKDMLSSAS*EAEGWM Trigger: CATCCAACCCTCTGCTTCTCAAGAGGCGGAAGAAAG...CATGTCTTTGATGGTGTGTTCAACACTCAGACTGTTGTAAACTCTCGTTTTGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
||
| CDS-3UTR GCA 90 bp | TACAAAACGAGAGTTTACAACAGTCTGAGTGTTGAACACACCATCAAAGACATGGAATACGAGTCTTCATaGCCGGAGAGATGGCAAGGC | + |
|
Preference number: 4 (lower is better) Translates to: YKTRVYNSLSVEHTIKDMEYESS*PERWQG Trigger: GCCTTGCCATCTCTCCGGGCATGAAGACTCGTATTC...CATGTCTTTGATGGTGTGTTCAACACTCAGACTGTTGTAAACTCTCGTTTTGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
||
| CDS-3UTR CCA 90 bp | AAAACGAGAGTTTACAACAGTCTGAGTGTTGAACACACCATCAAAGACATGGGACTTTCTGTGAATGCCTaGTCTCCTCGGTCCTGGATT | + |
|
Preference number: 4 (lower is better) Translates to: KTRVYNSLSVEHTIKDMGLSVNA*SPRSWI Trigger: AATCCAGGACCGAGGAGACCAGGCATTCACAGAAAG...TCCCATGTCTTTGATGGTGTGTTCAACACTCAGACTGTTGTAAACTCTCGTTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
||
| CDS-3UTR CCA 90 bp | AAGAAGACAGGTTCCATAAAAACTCTACGCCAAATTACAGATAAAATGCAAAGGCCTTCAGGACACGGCTaGTGTGCAGTGGAGTCTGAG | + |
|
Preference number: 4 (lower is better) Translates to: KKTGSIKTLRQITDKMQRPSGHG*CAVESE Trigger: CTCAGACTCCACTGCACACCAGCCGTGTCCTGAAGG...CCTTTGCATTTTATCTGTAATTTGGCGTAGAGTTTTTATGGAACCTGTCTTCTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
||
| CDS-3UTR CCA 90 bp | AAAACGAGAGTTTACAACAGTCTGAGTGTTGAACACACCATCAAAGACATGGGAGTGATGGTCATTCTCTaGGTGGGCTCTGTTTTTAGC | + |
|
Preference number: 4 (lower is better) Translates to: KTRVYNSLSVEHTIKDMGVMVIL*VGSVFS Trigger: GCTAAAAACAGAGCCCACCCAGAGAATGACCATCAC...TCCCATGTCTTTGATGGTGTGTTCAACACTCAGACTGTTGTAAACTCTCGTTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| CDS-3UTR CCA 90 bp | TACAAAACGAGAGTTTACAACAGTCTGAGTGTTGAACACACCATCAAAGACATGTGGCATTGGGCCTTTTaGAAGTATATAAGAGGTTCT | + |
|
Preference number: 4 (lower is better) Translates to: YKTRVYNSLSVEHTIKDMWHWAF*KYIRGS Trigger: AGAACCTCTTATATACTTCCAAAAGGCCCAATGCCA...CATGTCTTTGATGGTGTGTTCAACACTCAGACTGTTGTAAACTCTCGTTTTGTA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
||
| CDS-3UTR CCA 90 bp | AAGAAGACAGGTTCCATAAAAACTCTACGCCAAATTACAGATAAAATGCAAAGGTCAAAGAGTTGTGACTaGTGGTTTCCTTGGCAAAGC | + |
|
Preference number: 4 (lower is better) Translates to: KKTGSIKTLRQITDKMQRSKSCD*WFPWQS Trigger: GCTTTGCCAAGGAAACCACCAGTCACAACTCTTTGA...CCTTTGCATTTTATCTGTAATTTGGCGTAGAGTTTTTATGGAACCTGTCTTCTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
||
| CDS CCA 90 bp | GGGGGAACGGCGGCGGCGGCTGGGCCGGGGCTGGCGGTGGAGGGCTaGGGAAAGGCGCCGGCGGAGTCTGGCCCGGAGAGCCCGACAGCA | + |
|
Preference number: 5 (lower is better) Translates to: GGTAAAAGPGLAVEG*GKAPAESGPESPTA Trigger: TGCTGTCGGGCTCTCCGGGCCAGACTCCGCCGGCGCCTTTCCCCAGCCCTCCACCGCCAGCCCCGGCCCAGCCGCCGCCGCCGTTCCCCC 80% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
||
| CDS-3UTR CAA 90 bp | CAGATTCTAGAGCCAGTGAGGACCCCACGTTACAGTGGGAGGCCAGAGGAGACACGCAGCACCTTCCCGTaGATGCCCAGGCCAAGCACT | + |
|
Preference number: 5 (lower is better) Translates to: QILEPVRTPRYSGRPEETRSTFP*MPRPST Trigger: AGTGCTTGGCCTGGGCATCAACGGGAAGGTGCTGCG...TGTCTCCTCTGGCCTCCCACTGTAACGTGGGGTCCTCACTGGCTCTAGAATCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| CDS-3UTR CAA 90 bp | CCACCAGACCACATGGTGGAAATCCAGGAAGACCACACGTGGTCCTGCCCTTGTGCCCAGGCCAAGCACTaGGCTGGTGACCTTGTAGTC | + |
|
Preference number: 5 (lower is better) Translates to: PPDHMVEIQEDHTWSCPCAQAKH*AGDLVV Trigger: GACTACAAGGTCACCAGCCAAGTGCTTGGCCTGGGC...ACAAGGGCAGGACCACGTGTGGTCTTCCTGGATTTCCACCATGTGGTCTGGTGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
||
| CDS CCA 90 bp | CGCGCCTTCGGACAGTCCTGGAGCATCTTTAGGGCGAATTTTTGCTaGGTTCTCTTGTCGAAGATCCGCAGCACCTTCCCGTTGATGCCC | + |
|
Preference number: 5 (lower is better) Translates to: RAFGQSWSIFRANFC*VLLSKIRSTFPLMP Trigger: GGGCATCAACGGGAAGGTGCTGCGGATCTTCGACAAGAGAACCCAGCAAAAATTCGCCCTAAAGATGCTCCAGGACTGTCCGAAGGCGCG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| CDS CCA 90 bp | CTCCCATCGTTCCTTGTCCTCCTTCAGGACACGGCTGGTGTGCAGTaGAGTCTGAGGGACCTTCGTAGATTGCATGATCCAGGGGTGGTT | + |
|
Preference number: 5 (lower is better) Translates to: LPSFLVLLQDTAGVQ*SLRDLRRLHDPGVV Trigger: AACCACCCCTGGATCATGCAATCTACGAAGGTCCCTCAGACTCCACTGCACACCAGCCGTGTCCTGAAGGAGGACAAGGAACGATGGGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| CDS GCA 90 bp | CTGCGCGCCTTCGGACAGTCCTGGAGCATCTTTAGGGCGAATTTTTaGTGGGTTCTCTTGTCGAAGATCCGCAGCACCTTCCCGTTGATG | + |
|
Preference number: 5 (lower is better) Translates to: LRAFGQSWSIFRANF*WVLLSKIRSTFPLM Trigger: CATCAACGGGAAGGTGCTGCGGATCTTCGACAAGAGAACCCAGCAAAAATTCGCCCTAAAGATGCTCCAGGACTGTCCGAAGGCGCGCAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| CDS-3UTR CAA 90 bp | CGCCAAATTACAGATAAAATGCAAAGGAGCAACGGGCTCAGGAGCACCTTGCCCATCTGCAGGCCCGACTaGACGTGGAACTGGGGGAAC | + |
|
Preference number: 5 (lower is better) Translates to: RQITDKMQRSNGLRSTLPICRPD*TWNWGN Trigger: GTTCCCCCAGTTCCACGTCAAGTCGGGCCTGCAGAT...GGGCAAGGTGCTCCTGAGCCCGTTGCTCCTTTGCATTTTATCTGTAATTTGGCG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| CDS TCA 90 bp | CGTTCCTTGTCCTCCTTCAGGACACGGCTGGTGTGCAGTGGAGTCTaGGGGACCTTCGTAGATTGCATGATCCAGGGGTGGTTCATGAAT | + |
|
Preference number: 5 (lower is better) Translates to: RSLSSFRTRLVCSGV*GTFVDCMIQGWFMN Trigger: ATTCATGAACCACCCCTGGATCATGCAATCTACGAAGGTCCCTCAGACTCCACTGCACACCAGCCGTGTCCTGAAGGAGGACAAGGAACG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| CDS-3UTR CAA 90 bp | CGCCAAATTACAGATAAAATGCAAAGGAGCAACGGGCTCAGGAGCACCTTGCCCTCCTCCCATCGTTCCTaGTCCTCCTTCAGGACACGG | + |
|
Preference number: 5 (lower is better) Translates to: RQITDKMQRSNGLRSTLPSSHRS*SSFRTR Trigger: CCGTGTCCTGAAGGAGGACAAGGAACGATGGGAGGA...GGGCAAGGTGCTCCTGAGCCCGTTGCTCCTTTGCATTTTATCTGTAATTTGGCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
||
| CDS CCA 90 bp | CCGATGCTCTTCATGATCTCTGACGCCTCTCTTTCTGTGAATGCCTaGTCTCCTCGGTCCTGGATTCGACTAAAGAGCTCTCCACCATCG | + |
|
Preference number: 5 (lower is better) Translates to: PMLFMISDASLSVNA*SPRSWIRLKSSPPS Trigger: CGATGGTGGAGAGCTCTTTAGTCGAATCCAGGACCGAGGAGACCAGGCATTCACAGAAAGAGAGGCGTCAGAGATCATGAAGAGCATCGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000016672.11 ENSMUST00000188459.4 |
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| CDS-3UTR CAA 90 bp | TTCAGAGAACTCGACAAGAGTGGGTTAATCGTGGCAAGAAGGGCAAGCAGAGGCCTGGTCATCTCCTCCTaGACATCCTCCCATCGTTCC | + |
|
Preference number: 5 (lower is better) Translates to: FRELDKSGLIVARRASRGLVISS*TSSHRS Trigger: GGAACGATGGGAGGATGTCAAGGAGGAGATGACCAG...GCCTCTGCTTGCCCTTCTTGCCACGATTAACCCACTCTTGTCGAGTTCTCTGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| CDS CCA 90 bp | ATCTCTGACGCCTCTCTTTCTGTGAATGCCTGGTCTCCTCGGTCCTaGATTCGACTAAAGAGCTCTCCACCATCGAGACACTCCATGACA | + |
|
Preference number: 5 (lower is better) Translates to: ISDASLSVNAWSPRS*IRLKSSPPSRHSMT Trigger: TGTCATGGAGTGTCTCGATGGTGGAGAGCTCTTTAGTCGAATCCAGGACCGAGGAGACCAGGCATTCACAGAAAGAGAGGCGTCAGAGAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000016672.11 ENSMUST00000188459.4 |
||
| CDS-3UTR CAA 90 bp | AATCCAGGAAGACCACACGTGGTCCTGCCCTTGTCGAAGGGAGGTTGGCAGGTAATGGCATTGGGCCTTTaGGAAGTATATAAGAGGTTC | + |
|
Preference number: 5 (lower is better) Translates to: NPGRPHVVLPLSKGGWQVMALGL*EVYKRF Trigger: GAACCTCTTATATACTTCCAAAAGGCCCAATGCCAT...TACCTGCCAACCTCCCTTCGACAAGGGCAGGACCACGTGTGGTCTTCCTGGATT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| CDS GCA 90 bp | CACAGCACGAGCTTTCTTCCGCCTCTTGAGAAGCAGAGGGTTGGATaGGTCTTCTATCTTCTTTATCTTGATCTGCTCATAGTCAACACG | + |
|
Preference number: 5 (lower is better) Translates to: HSTSFLPPLEKQRVG*VFYLLYLDLLIVNT Trigger: CGTGTTGACTATGAGCAGATCAAGATAAAGAAGATAGAAGACGCATCCAACCCTCTGCTTCTCAAGAGGCGGAAGAAAGCTCGTGCTGTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
||
| CDS-3UTR CAA 90 bp | AAGAAGACAGGTTCCATAAAAACTCTACGCCAAATTACAGATAAAATGCAAAGGGCTTTCTTCCGCCTCTaGAGAAGCAGAGGGTTGGAT | + |
|
Preference number: 5 (lower is better) Translates to: KKTGSIKTLRQITDKMQRAFFRL*RSRGLD Trigger: ATCCAACCCTCTGCTTCTCAAGAGGCGGAAGAAAGC...CCTTTGCATTTTATCTGTAATTTGGCGTAGAGTTTTTATGGAACCTGTCTTCTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
||
| CDS CAA 72 bp | TCGGTGATGGCGTTCTTTCGGATCTGCAGGCCCGACTaGACGTGGAACTGGGGGAACGGCGGCGGCGGCTGG | + |
|
Preference number: 6 (lower is better) Translates to: SVMAFFRICRPD*TWNWGNGGGGW Trigger: CCAGCCGCCGCCGCCGTTCCCCCAGTTCCACGTCAAGTCGGGCCTGCAGATCCGAAAGAACGCCATCACCGA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
||
| CDS TCA 72 bp | TCCTCCTTCAGGACACGGCTGGTGTGCAGTGGAGTCTaGGGGACCTTCGTAGATTGCATGATCCAGGGGTGG | + |
|
Preference number: 6 (lower is better) Translates to: SSFRTRLVCSGV*GTFVDCMIQGW Trigger: CCACCCCTGGATCATGCAATCTACGAAGGTCCCTCAGACTCCACTGCACACCAGCCGTGTCCTGAAGGAGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
||
| CDS CAA 72 bp | TGGGTTCTCTTGTCGAAGATCCGCAGCACCTTCCCGTaGATGCCCAGGCCAAGCACTTGGCTGGTGACCTTG | + |
|
Preference number: 6 (lower is better) Translates to: WVLLSKIRSTFP*MPRPSTWLVTL Trigger: CAAGGTCACCAGCCAAGTGCTTGGCCTGGGCATCAACGGGAAGGTGCTGCGGATCTTCGACAAGAGAACCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
||
| CDS CCA 72 bp | TGCAGCTCCACCTCTCTGCGCGCCTTCGGACAGTCCTaGAGCATCTTTAGGGCGAATTTTTGCTGGGTTCTC | + |
|
Preference number: 6 (lower is better) Translates to: CSSTSLRAFGQS*SIFRANFCWVL Trigger: GAGAACCCAGCAAAAATTCGCCCTAAAGATGCTCCAGGACTGTCCGAAGGCGCGCAGAGAGGTGGAGCTGCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
||
| CDS CAA 72 bp | CTGGTCATCTCCTCCTTGACATCCTCCCATCGTTCCTaGTCCTCCTTCAGGACACGGCTGGTGTGCAGTGGA | + |
|
Preference number: 6 (lower is better) Translates to: LVISSLTSSHRS*SSFRTRLVCSG Trigger: TCCACTGCACACCAGCCGTGTCCTGAAGGAGGACAAGGAACGATGGGAGGATGTCAAGGAGGAGATGACCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
||
| CDS CAA 90 bp | GGACAGTCCTGGAGCATCTTTAGGGCGAATTTTTGCTGGGTTCTCTaGTCGAAGATCCGCAGCACCTTCCCGTTGATGCCCAGGCCAAGC | + |
|
Preference number: 6 (lower is better) Translates to: GQSWSIFRANFCWVL*SKIRSTFPLMPRPS Trigger: GCTTGGCCTGGGCATCAACGGGAAGGTGCTGCGGATCTTCGACAAGAGAACCCAGCAAAAATTCGCCCTAAAGATGCTCCAGGACTGTCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
||
| CDS CAA 72 bp | GCCGCATCCTCCACAGCACGAGCTTTCTTCCGCCTCTaGAGAAGCAGAGGGTTGGATGCGTCTTCTATCTTC | + |
|
Preference number: 6 (lower is better) Translates to: AASSTARAFFRL*RSRGLDASSIF Trigger: GAAGATAGAAGACGCATCCAACCCTCTGCTTCTCAAGAGGCGGAAGAAAGCTCGTGCTGTGGAGGATGCGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
||
| CDS TCA 72 bp | CCGCATCCTCCACAGCACGAGCTTTCTTCCGCCTCTTaGGAAGCAGAGGGTTGGATGCGTCTTCTATCTTCT | + |
|
Preference number: 6 (lower is better) Translates to: PHPPQHELSSAS*EAEGWMRLLSS Trigger: AGAAGATAGAAGACGCATCCAACCCTCTGCTTCTCAAGAGGCGGAAGAAAGCTCGTGCTGTGGAGGATGCGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
||
| CDS CCA 72 bp | GGACAGTCCTGGAGCATCTTTAGGGCGAATTTTTGCTaGGTTCTCTTGTCGAAGATCCGCAGCACCTTCCCG | + |
|
Preference number: 6 (lower is better) Translates to: GQSWSIFRANFC*VLLSKIRSTFP Trigger: CGGGAAGGTGCTGCGGATCTTCGACAAGAGAACCCAGCAAAAATTCGCCCTAAAGATGCTCCAGGACTGTCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
||
| CDS CCA 72 bp | GCCTCTCTTTCTGTGAATGCCTGGTCTCCTCGGTCCTaGATTCGACTAAAGAGCTCTCCACCATCGAGACAC | + |
|
Preference number: 6 (lower is better) Translates to: ASLSVNAWSPRS*IRLKSSPPSRH Trigger: GTGTCTCGATGGTGGAGAGCTCTTTAGTCGAATCCAGGACCGAGGAGACCAGGCATTCACAGAAAGAGAGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000016672.11 ENSMUST00000188459.4 |
||
| CDS CCA 72 bp | TTCCTTGTCCTCCTTCAGGACACGGCTGGTGTGCAGTaGAGTCTGAGGGACCTTCGTAGATTGCATGATCCA | + |
|
Preference number: 6 (lower is better) Translates to: FLVLLQDTAGVQ*SLRDLRRLHDP Trigger: TGGATCATGCAATCTACGAAGGTCCCTCAGACTCCACTGCACACCAGCCGTGTCCTGAAGGAGGACAAGGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
||
| CDS CAA 90 bp | TGGGCGAGAGCCGCATCCTCCACAGCACGAGCTTTCTTCCGCCTCTaGAGAAGCAGAGGGTTGGATGCGTCTTCTATCTTCTTTATCTTG | + |
|
Preference number: 6 (lower is better) Translates to: WARAASSTARAFFRL*RSRGLDASSIFFIL Trigger: CAAGATAAAGAAGATAGAAGACGCATCCAACCCTCTGCTTCTCAAGAGGCGGAAGAAAGCTCGTGCTGTGGAGGATGCGGCTCTCGCCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
||
| CDS CCA 72 bp | CTTCTCCGGGCCCAGGACTTCCGGAGCCACATAGTATaGTGTATAACACGGAGTGGTCAAAGAGTTGTGACT | + |
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Preference number: 6 (lower is better) Translates to: LLRAQDFRSHIV*CITRSGQRVVT Trigger: AGTCACAACTCTTTGACCACTCCGTGTTATACACCATACTATGTGGCTCCGGAAGTCCTGGGCCCGGAGAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000016672.11 ENSMUST00000188459.4 |
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| CDS CAA 72 bp | TGGAGCATCTTTAGGGCGAATTTTTGCTGGGTTCTCTaGTCGAAGATCCGCAGCACCTTCCCGTTGATGCCC | + |
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Preference number: 6 (lower is better) Translates to: WSIFRANFCWVL*SKIRSTFPLMP Trigger: GGGCATCAACGGGAAGGTGCTGCGGATCTTCGACAAGAGAACCCAGCAAAAATTCGCCCTAAAGATGCTCCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| CDS GCA 72 bp | TTCGGACAGTCCTGGAGCATCTTTAGGGCGAATTTTTaGTGGGTTCTCTTGTCGAAGATCCGCAGCACCTTC | + |
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Preference number: 6 (lower is better) Translates to: FGQSWSIFRANF*WVLLSKIRSTF Trigger: GAAGGTGCTGCGGATCTTCGACAAGAGAACCCAGCAAAAATTCGCCCTAAAGATGCTCCAGGACTGTCCGAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| CDS CCA 72 bp | TTCATGATCTCTGACGCCTCTCTTTCTGTGAATGCCTaGTCTCCTCGGTCCTGGATTCGACTAAAGAGCTCT | + |
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Preference number: 6 (lower is better) Translates to: FMISDASLSVNA*SPRSWIRLKSS Trigger: AGAGCTCTTTAGTCGAATCCAGGACCGAGGAGACCAGGCATTCACAGAAAGAGAGGCGTCAGAGATCATGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000016672.11 ENSMUST00000188459.4 |
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| CDS TCA 72 bp | GCAGAGGGTTGGATGCGTCTTCTATCTTCTTTATCTTaGTCTGCTCATAGTCAACACGCATCGTGGCCAAGG | + |
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Preference number: 6 (lower is better) Translates to: AEGWMRLLSSLS*SAHSQHASWPR Trigger: CCTTGGCCACGATGCGTGTTGACTATGAGCAGATCAAGATAAAGAAGATAGAAGACGCATCCAACCCTCTGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016672.11 |
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| CDS CCA 72 bp | CTTCCGGAGCCACATAGTATGGTGTATAACACGGAGTaGTCAAAGAGTTGTGACTGGTGGTTTCCTTGGCAA | + |
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Preference number: 6 (lower is better) Translates to: LPEPHSMVYNTE*SKSCDWWFPWQ Trigger: TTGCCAAGGAAACCACCAGTCACAACTCTTTGACCACTCCGTGTTATACACCATACTATGTGGCTCCGGAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000016672.11 ENSMUST00000188459.4 |
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