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Pregenerated sensors for MAPK8IP2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022619

Ensembl transcript IDs: ENSMUST00000023291.6

Found 172 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CCACCTCCACCAAGATCTGAGCCACGCCTCTCCCCATACTCCAAATaGGAAAGACACAGGGTCTGTGGCCAGTGCCTTCATGCCTGGGCT +
Preference number: 1 (lower is better)
Translates to: PPPPRSEPRLSPYSK*ERHRVCGQCLHAWA
Trigger: AGCCCAGGCATGAAGGCACTGGCCACAGACCCTGTGTCTTTCCCATTTGGAGTATGGGGAGAGGCGTGGCTCAGATCTTGGTGGAGGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR TCA 90 bp CACACCACCACCACCATCACCACCACCACCACCTCCACCAAGATCTaGGCCACGCCTCTCCCCATACTCCAAATGGGAAAGACACAGGGT +
Preference number: 1 (lower is better)
Translates to: HTTTTITTTTTSTKI*ATPLPILQMGKTQG
Trigger: ACCCTGTGTCTTTCCCATTTGGAGTATGGGGAGAGGCGTGGCTCAGATCTTGGTGGAGGTGGTGGTGGTGGTGATGGTGGTGGTGGTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR CCA 90 bp CTGGAGGTGAGGTGGAATGGTCTCTGCTGCAAAGCTGCACAGGTCTaGAGGCCACGCCTCCATCATCCAGCACAGGGGTACAGGTTTCAT +
Preference number: 1 (lower is better)
Translates to: LEVRWNGLCCKAAQV*RPRLHHPAQGYRFH
Trigger: ATGAAACCTGTACCCCTGTGCTGGATGATGGAGGCGTGGCCTCCAGACCTGTGCAGCTTTGCAGCAGAGACCATTCCACCTCACCTCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR CCA 90 bp CTGGGAGGGAAACAGGACAGAAAGGATAAGGAACTGGAGGTGAGGTaGAATGGTCTCTGCTGCAAAGCTGCACAGGTCTGGAGGCCACGC +
Preference number: 1 (lower is better)
Translates to: LGGKQDRKDKELEVR*NGLCCKAAQVWRPR
Trigger: GCGTGGCCTCCAGACCTGTGCAGCTTTGCAGCAGAGACCATTCCACCTCACCTCCAGTTCCTTATCCTTTCTGTCCTGTTTCCCTCCCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR TCA 90 bp GGGGGCGAGAGACAGAGGAAAGGCCGTCGGAGGGAACGGGACAAATaGGGACAGGAGAGGGAAAGATGCATCGGAAGAAAAATATGGCTG +
Preference number: 1 (lower is better)
Translates to: GGERQRKGRRRERDK*GQERERCIGRKIWL
Trigger: CAGCCATATTTTTCTTCCGATGCATCTTTCCCTCTCCTGTCCTCATTTGTCCCGTTCCCTCCGACGGCCTTTCCTCTGTCTCTCGCCCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR CCA 90 bp TGCCTTGAAGCCAGTAAGGAAGAACCCAGGACAGGACAAGGCTTGTaGGGCAACCAGAGAGGTAGGAGGAAAGCAGCAAGGAAAGGCCAC +
Preference number: 1 (lower is better)
Translates to: CLEASKEEPRTGQGL*GNQRGRRKAARKGH
Trigger: GTGGCCTTTCCTTGCTGCTTTCCTCCTACCTCTCTGGTTGCCCCACAAGCCTTGTCCTGTCCTGGGTTCTTCCTTACTGGCTTCAAGGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR CCA 90 bp CAGGGCAGGTGGGGGTCCTGGTTTACCAATAGGTTGCTAGGTACATaGAGAGGGGTGCATGTGCATAGTGCATGCAGGCAAGGATGTCAG +
Preference number: 1 (lower is better)
Translates to: QGRWGSWFTNRLLGT*RGVHVHSACRQGCQ
Trigger: CTGACATCCTTGCCTGCATGCACTATGCACATGCACCCCTCTCCATGTACCTAGCAACCTATTGGTAAACCAGGACCCCCACCTGCCCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR CCA 90 bp GGACTTCAGAAAACACTGAAGACTCCTCCCATAACCCCCTCACCCTaGGTCCTCCCTTTCCATTACCACAGGCAGTACCTGAGACCTGGA +
Preference number: 1 (lower is better)
Translates to: GLQKTLKTPPITPSP*VLPFHYHRQYLRPG
Trigger: TCCAGGTCTCAGGTACTGCCTGTGGTAATGGAAAGGGAGGACCCAGGGTGAGGGGGTTATGGGAGGAGTCTTCAGTGTTTTCTGAAGTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR GCA 90 bp AAGACACAGGGTCTGTGGCCAGTGCCTTCATGCCTGGGCTATCTCTaGAGAAACTCAAGTGTGTTTGCAGTAAATGTCTGTGAGGGCCAC +
Preference number: 1 (lower is better)
Translates to: KTQGLWPVPSCLGYL*RNSSVFAVNVCEGH
Trigger: GTGGCCCTCACAGACATTTACTGCAAACACACTTGAGTTTCTGCAGAGATAGCCCAGGCATGAAGGCACTGGCCACAGACCCTGTGTCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR GCA 90 bp GTAGCCCAGACCAAGTGGAGTCCCAGCTTACTAAACTATTCCCTATaGTTGCCTGCCTTGAAGCCAGTAAGGAAGAACCCAGGACAGGAC +
Preference number: 1 (lower is better)
Translates to: VAQTKWSPSLLNYSL*LPALKPVRKNPGQD
Trigger: GTCCTGTCCTGGGTTCTTCCTTACTGGCTTCAAGGCAGGCAAGCATAGGGAATAGTTTAGTAAGCTGGGACTCCACTTGGTCTGGGCTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR GCA 90 bp GACCAAGTGGAGTCCCAGCTTACTAAACTATTCCCTATGCTTGCCTaGCTTGAAGCCAGTAAGGAAGAACCCAGGACAGGACAAGGCTTG +
Preference number: 1 (lower is better)
Translates to: DQVESQLTKLFPMLA*LEASKEEPRTGQGL
Trigger: CAAGCCTTGTCCTGTCCTGGGTTCTTCCTTACTGGCTTCAAGGCAGGCAAGCATAGGGAATAGTTTAGTAAGCTGGGACTCCACTTGGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR GCA 90 bp AATAGGTTGCTAGGTACATGGAGAGGGGTGCATGTGCATAGTGCATaGAGGCAAGGATGTCAGGCTGCCAAGTGCATCATTAGAAAAGGG +
Preference number: 1 (lower is better)
Translates to: NRLLGTWRGVHVHSA*RQGCQAAKCIIRKG
Trigger: CCCTTTTCTAATGATGCACTTGGCAGCCTGACATCCTTGCCTGCATGCACTATGCACATGCACCCCTCTCCATGTACCTAGCAACCTATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR CCA 90 bp CACTACGCTCGAGGGCTCCAGGTTGTTGCCTGGAGACTTCTATTATaGAGACTAAAGGAAGGAGGAGATGCTATTGGCATAGTTTGGGTG +
Preference number: 1 (lower is better)
Translates to: HYARGLQVVAWRLLL*RLKEGGDAIGIVWV
Trigger: CACCCAAACTATGCCAATAGCATCTCCTCCTTCCTTTAGTCTCCATAATAGAAGTCTCCAGGCAACAACCTGGAGCCCTCGAGCGTAGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR CCA 90 bp GCTATTGGCATAGTTTGGGTGGTTCTCTATTTTGAAAGGCAGGCTTaGAATACAGAAACCCTCTGTCCAGTGCACAGGTCCCCTCCCATA +
Preference number: 1 (lower is better)
Translates to: AIGIVWVVLYFERQA*NTETLCPVHRSPPI
Trigger: TATGGGAGGGGACCTGTGCACTGGACAGAGGGTTTCTGTATTCCAAGCCTGCCTTTCAAAATAGAGAACCACCCAAACTATGCCAATAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR CCA 90 bp ATACCAATTTTTGAGACCCACAAACATTGTTTCTCAAGTTGTTTGTaGCACACACACACCACCACCACCATCACCACCACCACCACCTCC +
Preference number: 1 (lower is better)
Translates to: IPIFETHKHCFSSCL*HTHTTTTITTTTTS
Trigger: GGAGGTGGTGGTGGTGGTGATGGTGGTGGTGGTGTGTGTGTGCCACAAACAACTTGAGAAACAATGTTTGTGGGTCTCAAAAATTGGTAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR CCA 90 bp CTATTATGGAGACTAAAGGAAGGAGGAGATGCTATTGGCATAGTTTaGGTGGTTCTCTATTTTGAAAGGCAGGCTTGGAATACAGAAACC +
Preference number: 1 (lower is better)
Translates to: LLWRLKEGGDAIGIV*VVLYFERQAWNTET
Trigger: GGTTTCTGTATTCCAAGCCTGCCTTTCAAAATAGAGAACCACCCAAACTATGCCAATAGCATCTCCTCCTTCCTTTAGTCTCCATAATAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR TCA 90 bp CACCAAACCAGTCTCCTCATCCTGATACTAGACATAACTGTAATGTaGCAGAATAGGATCTTAAGTTTAGTAATCCTTAAGGGAAGGAGA +
Preference number: 1 (lower is better)
Translates to: HQTSLLILILDITVM*QNRILSLVILKGRR
Trigger: TCTCCTTCCCTTAAGGATTACTAAACTTAAGATCCTATTCTGTCACATTACAGTTATGTCTAGTATCAGGATGAGGAGACTGGTTTGGTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR-3UTR TCA 90 bp TTGCCTGCCTTGAAGCCAGTAAGGAAGAACCCAGGACAGGACAAGGCTTGTGGGACCACAGGCAGTACCTaGGACCTGGAGCCCACCTGG +
Preference number: 2 (lower is better)
Translates to: LPALKPVRKNPGQDKACGTTGST*DLEPTW
Trigger: CCAGGTGGGCTCCAGGTCTCAGGTACTGCCTGTGGT...CCCACAAGCCTTGTCCTGTCCTGGGTTCTTCCTTACTGGCTTCAAGGCAGGCAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR CAA 90 bp GGGCAGGAGGGAACCACTGGAGGGAACCTGACTTCATCGGTTACCTaGAGCCTACTCCCCTCCCTCAAAGTTCTGCCTCCCAAAGAGAGA +
Preference number: 2 (lower is better)
Translates to: GQEGTTGGNLTSSVT*SLLPSLKVLPPKER
Trigger: TCTCTCTTTGGGAGGCAGAACTTTGAGGGAGGGGAGTAGGCTCAAGGTAACCGATGAAGTCAGGTTCCCTCCAGTGGTTCCCTCCTGCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR-3UTR TCA 90 bp GAAGCTGATCCTACTTTCCAGAGTGGACTACCTGTGCATCTCAGGGCAGGTGGGTTCCCGAGCTCCTTGTaGGTTTGGGGGCTAGGATCC +
Preference number: 2 (lower is better)
Translates to: EADPTFQSGLPVHLRAGGFPSSL*VWGLGS
Trigger: GGATCCTAGCCCCCAAACTCACAAGGAGCTCGGGAA...CCCACCTGCCCTGAGATGCACAGGTAGTCCACTCTGGAAAGTAGGATCAGCTTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR-3UTR CCA 90 bp CGCCTCTCCCCATACTCCAAATGGGAAAGACACAGGGTCTGTGGCCAGTGCCTTTCAGAGCTGTGTAGATaGGAGCTGAGGGAGGTGGCT +
Preference number: 2 (lower is better)
Translates to: RLSPYSKWERHRVCGQCLSELCR*ELREVA
Trigger: AGCCACCTCCCTCAGCTCCCATCTACACAGCTCTGA...AAGGCACTGGCCACAGACCCTGTGTCTTTCCCATTTGGAGTATGGGGAGAGGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR-3UTR CCA 90 bp GAAGCTGATCCTACTTTCCAGAGTGGACTACCTGTGCATCTCAGGGCAGGTGGGTCAAGGGAGGAAGACTaGGCCCTGGGAGGGAAACAG +
Preference number: 2 (lower is better)
Translates to: EADPTFQSGLPVHLRAGGSREED*ALGGKQ
Trigger: CTGTTTCCCTCCCAGGGCCCAGTCTTCCTCCCTTGA...CCCACCTGCCCTGAGATGCACAGGTAGTCCACTCTGGAAAGTAGGATCAGCTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR CAA 90 bp GTTCCAAATGTCCCCGATCCAGTCCTTGCTCAAGCCACAGTGGCCTaGAGATACTCAGAGCTGTGTAGATGGGAGCTGAGGGAGGTGGCT +
Preference number: 2 (lower is better)
Translates to: VPNVPDPVLAQATVA*RYSELCRWELREVA
Trigger: AGCCACCTCCCTCAGCTCCCATCTACACAGCTCTGAGTATCTCAAGGCCACTGTGGCTTGAGCAAGGACTGGATCGGGGACATTTGGAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR-3UTR CCA 90 bp AGTGGACTACCTGTGCATCTCAGGGCAGGTGGGGGTCCTGGTTTACCAATAGGTGCAGGAGGGAACCACTaGAGGGAACCTGACTTCATC +
Preference number: 2 (lower is better)
Translates to: SGLPVHLRAGGGPGLPIGAGGNH*REPDFI
Trigger: GATGAAGTCAGGTTCCCTCCAGTGGTTCCCTCCTGC...ACCTATTGGTAAACCAGGACCCCCACCTGCCCTGAGATGCACAGGTAGTCCACT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR CAA 90 bp GGAGCACCCTTTGGGGGTGCCCTCCTCCTAGCAGCATTGGGGGCTTaGGGTGAGCATCAAGAACCACCTAGTTATCCTAAGGTTCTCTTA +
Preference number: 2 (lower is better)
Translates to: GAPFGGALLLAALGA*GEHQEPPSYPKVLL
Trigger: TAAGAGAACCTTAGGATAACTAGGTGGTTCTTGATGCTCACCCAAAGCCCCCAATGCTGCTAGGAGGAGGGCACCCCCAAAGGGTGCTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR-3UTR TCA 90 bp CACCACCTTCAGCTCGGCTCTTCTAGCACAGCATGCAGTGATCCACTCTCAACACTTCATCGGTTACCTTaGGCCTACTCCCCTCCCTCA +
Preference number: 2 (lower is better)
Translates to: HHLQLGSSSTACSDPLSTLHRLP*AYSPPS
Trigger: TGAGGGAGGGGAGTAGGCTCAAGGTAACCGATGAAG...TGTTGAGAGTGGATCACTGCATGCTGTGCTAGAAGAGCCGAGCTGAAGGTGGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR-3UTR TCA 90 bp GAAGCTGATCCTACTTTCCAGAGTGGACTACCTGTGCATCTCAGGGCAGGTGGGAGCTCCCAAAAGCCATaGCCTGGGGATAAAGGAGAA +
Preference number: 2 (lower is better)
Translates to: EADPTFQSGLPVHLRAGGSSQKP*PGDKGE
Trigger: TTCTCCTTTATCCCCAGGTCATGGCTTTTGGGAGCT...CCCACCTGCCCTGAGATGCACAGGTAGTCCACTCTGGAAAGTAGGATCAGCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR-3UTR TCA 90 bp AGTGGACTACCTGTGCATCTCAGGGCAGGTGGGGGTCCTGGTTTACCAATAGGTATAAGGAACTGGAGGTaGGGTGGAATGGTCTCTGCT +
Preference number: 2 (lower is better)
Translates to: SGLPVHLRAGGGPGLPIGIRNWR*GGMVSA
Trigger: AGCAGAGACCATTCCACCTCACCTCCAGTTCCTTAT...ACCTATTGGTAAACCAGGACCCCCACCTGCCCTGAGATGCACAGGTAGTCCACT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR-3UTR GCA 90 bp TGCATGTGCATAGTGCATGCAGGCAAGGATGTCAGGCTGCCAAGTGCATCATTAAGGGTCTGTGGCCAGTaGCTTCATGCCTGGGCTATC +
Preference number: 2 (lower is better)
Translates to: CMCIVHAGKDVRLPSASLRVCGQ*LHAWAI
Trigger: GATAGCCCAGGCATGAAGGCACTGGCCACAGACCCT...TAATGATGCACTTGGCAGCCTGACATCCTTGCCTGCATGCACTATGCACATGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR-3UTR CCA 90 bp GAGGGAACCACTGGAGGGAACCTGACTTCATCGGTTACCTTGAGCCTACTCCCCATCGGAAGAAAAATATaGCTGCTGAGGCTCCTCTCC +
Preference number: 2 (lower is better)
Translates to: EGTTGGNLTSSVTLSLLPIGRKI*LLRLLS
Trigger: GGAGAGGAGCCTCAGCAGCCATATTTTTCTTCCGAT...GGGGAGTAGGCTCAAGGTAACCGATGAAGTCAGGTTCCCTCCAGTGGTTCCCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR-3UTR GCA 90 bp CTCCACCAAGATCTGAGCCACGCCTCTCCCCATACTCCAAATGGGAAAGACACACCTCCCTCAAAGTTCTaGCTCCCAAAGAGAGAGCAA +
Preference number: 2 (lower is better)
Translates to: LHQDLSHASPHTPNGKDTPPSKF*LPKREQ
Trigger: TTGCTCTCTCTTTGGGAGGCAGAACTTTGAGGGAGG...TGTGTCTTTCCCATTTGGAGTATGGGGAGAGGCGTGGCTCAGATCTTGGTGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR-3UTR CCA 90 bp ATATTTTGCCTTAATGCACATGCACCCCCAATCCAGTTCACACCAAACCAGTCTGCAGTACCTGAGACCTaGAGCCCACCTGGGCACCAC +
Preference number: 2 (lower is better)
Translates to: IFCLNAHAPPIQFTPNQSAVPET*SPPGHH
Trigger: GTGGTGCCCAGGTGGGCTCCAGGTCTCAGGTACTGC...AGACTGGTTTGGTGTGAACTGGATTGGGGGTGCATGTGCATTAAGGCAAAATAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR-3UTR TCA 90 bp TGCATGTGCATAGTGCATGCAGGCAAGGATGTCAGGCTGCCAAGTGCATCATTATGCAGTAAATGTCTGTaGGGGCCACACCACCTTCAG +
Preference number: 2 (lower is better)
Translates to: CMCIVHAGKDVRLPSASLCSKCL*GPHHLQ
Trigger: CTGAAGGTGGTGTGGCCCTCACAGACATTTACTGCA...TAATGATGCACTTGGCAGCCTGACATCCTTGCCTGCATGCACTATGCACATGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR-3UTR GCA 90 bp AGGGCAGGAGGGAACCACTGGAGGGAACCTGACTTCATCGGTTACCTTGAGCCTCAGGAGAGGGAAAGATaGATCGGAAGAAAAATATGG +
Preference number: 2 (lower is better)
Translates to: RAGGNHWREPDFIGYLEPQERER*IGRKIW
Trigger: CCATATTTTTCTTCCGATGCATCTTTCCCTCTCCTG...AGGCTCAAGGTAACCGATGAAGTCAGGTTCCCTCCAGTGGTTCCCTCCTGCCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR-3UTR GCA 90 bp AGTGGACTACCTGTGCATCTCAGGGCAGGTGGGGGTCCTGGTTTACCAATAGGTTGCCTGGGCTATCTCTaGAGAAACTCAAGTGTGTTT +
Preference number: 2 (lower is better)
Translates to: SGLPVHLRAGGGPGLPIGCLGYL*RNSSVF
Trigger: AAACACACTTGAGTTTCTGCAGAGATAGCCCAGGCA...ACCTATTGGTAAACCAGGACCCCCACCTGCCCTGAGATGCACAGGTAGTCCACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR-3UTR GCA 90 bp TGCATGTGCATAGTGCATGCAGGCAAGGATGTCAGGCTGCCAAGTGCATCATTATGGAATGGTCTCTGCTaGAAAGCTGCACAGGTCTGG +
Preference number: 2 (lower is better)
Translates to: CMCIVHAGKDVRLPSASLWNGLC*KAAQVW
Trigger: CCAGACCTGTGCAGCTTTGCAGCAGAGACCATTCCA...TAATGATGCACTTGGCAGCCTGACATCCTTGCCTGCATGCACTATGCACATGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR-3UTR CCA 90 bp CTCCACCAAGATCTGAGCCACGCCTCTCCCCATACTCCAAATGGGAAAGACACATCCTGTGATCAAAGGTaGGACGATCCCTTGAGATTC +
Preference number: 2 (lower is better)
Translates to: LHQDLSHASPHTPNGKDTSCDQR*DDPLRF
Trigger: GAATCTCAAGGGATCGTCCCACCTTTGATCACAGGA...TGTGTCTTTCCCATTTGGAGTATGGGGAGAGGCGTGGCTCAGATCTTGGTGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR-3UTR CCA 90 bp GTGGAGTCCCAGCTTACTAAACTATTCCCTATGCTTGCCTGCCTTGAAGCCAGTGTTTTCCTGGACACATaGGATGTTCCCCGGCACATG +
Preference number: 2 (lower is better)
Translates to: VESQLTKLFPMLACLEASVFLDT*DVPRHM
Trigger: CATGTGCCGGGGAACATCCCATGTGTCCAGGAAAAC...ACTGGCTTCAAGGCAGGCAAGCATAGGGAATAGTTTAGTAAGCTGGGACTCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR-3UTR CCA 90 bp GAAGCTGATCCTACTTTCCAGAGTGGACTACCTGTGCATCTCAGGGCAGGTGGGATTTACAGGTTTTCCTaGACACATGGGATGTTCCCC +
Preference number: 2 (lower is better)
Translates to: EADPTFQSGLPVHLRAGGIYRFS*THGMFP
Trigger: GGGGAACATCCCATGTGTCCAGGAAAACCTGTAAAT...CCCACCTGCCCTGAGATGCACAGGTAGTCCACTCTGGAAAGTAGGATCAGCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR-3UTR GCA 90 bp ATATTTTGCCTTAATGCACATGCACCCCCAATCCAGTTCACACCAAACCAGTCTGGAGAGGGGTGCATGTaGATAGTGCATGCAGGCAAG +
Preference number: 2 (lower is better)
Translates to: IFCLNAHAPPIQFTPNQSGEGCM*IVHAGK
Trigger: CTTGCCTGCATGCACTATGCACATGCACCCCTCTCC...AGACTGGTTTGGTGTGAACTGGATTGGGGGTGCATGTGCATTAAGGCAAAATAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR-3UTR CCA 90 bp ATATTTTGCCTTAATGCACATGCACCCCCAATCCAGTTCACACCAAACCAGTCTCAGCATTGGGGGCTTTaGGTGAGCATCAAGAACCAC +
Preference number: 2 (lower is better)
Translates to: IFCLNAHAPPIQFTPNQSQHWGL*VSIKNH
Trigger: GTGGTTCTTGATGCTCACCCAAAGCCCCCAATGCTG...AGACTGGTTTGGTGTGAACTGGATTGGGGGTGCATGTGCATTAAGGCAAAATAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR-3UTR TCA 90 bp ATATTTTGCCTTAATGCACATGCACCCCCAATCCAGTTCACACCAAACCAGTCTAAGCCACAGTGGCCTTaGGATACTCAGAGCTGTGTA +
Preference number: 2 (lower is better)
Translates to: IFCLNAHAPPIQFTPNQSKPQWP*DTQSCV
Trigger: TACACAGCTCTGAGTATCTCAAGGCCACTGTGGCTT...AGACTGGTTTGGTGTGAACTGGATTGGGGGTGCATGTGCATTAAGGCAAAATAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR-3UTR CCA 90 bp ATATTTTGCCTTAATGCACATGCACCCCCAATCCAGTTCACACCAAACCAGTCTAGCCTCCAGTGTTCTTaGATGTTAAGTATGTGCTAC +
Preference number: 2 (lower is better)
Translates to: IFCLNAHAPPIQFTPNQSSLQCS*MLSMCY
Trigger: GTAGCACATACTTAACATCCAAGAACACTGGAGGCT...AGACTGGTTTGGTGTGAACTGGATTGGGGGTGCATGTGCATTAAGGCAAAATAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR CCA 72 bp AGCCAGGGTCACACCAAGCAGAGTTTATTGATGCCGTaGGGGCGGGGCCCACGTACACAGCAGGTGGCAGCA +
Preference number: 3 (lower is better)
Translates to: SQGHTKQSLLMP*GRGPRTQQVAA
Trigger: TGCTGCCACCTGCTGTGTACGTGGGCCCCGCCCCCACGGCATCAATAAACTCTGCTTGGTGTGACCCTGGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR CCA 72 bp ACACAGCAGGTGGCAGCACGCAGGGCAGATACTCGCTaGACTGAAGGGGTGTTAGCGGCAAAAGCAGATGGC +
Preference number: 3 (lower is better)
Translates to: TQQVAARRADTR*TEGVLAAKADG
Trigger: GCCATCTGCTTTTGCCGCTAACACCCCTTCAGTCCAGCGAGTATCTGCCCTGCGTGCTGCCACCTGCTGTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR CCA 72 bp AGGTGGAATGGTCTCTGCTGCAAAGCTGCACAGGTCTaGAGGCCACGCCTCCATCATCCAGCACAGGGGTAC +
Preference number: 3 (lower is better)
Translates to: RWNGLCCKAAQV*RPRLHHPAQGY
Trigger: GTACCCCTGTGCTGGATGATGGAGGCGTGGCCTCCAGACCTGTGCAGCTTTGCAGCAGAGACCATTCCACCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR-3UTR CAA 90 bp CTGAAGACTCCTCCCATAACCCCCTCACCCTGGGTCCTCCCTTTCCATTACCACCTCCTCCTAGCAGCATaGGGGGCTTTGGGTGAGCAT +
Preference number: 3 (lower is better)
Translates to: LKTPPITPSPWVLPFHYHLLLAA*GALGEH
Trigger: ATGCTCACCCAAAGCCCCCAATGCTGCTAGGAGGAG...GTGGTAATGGAAAGGGAGGACCCAGGGTGAGGGGGTTATGGGAGGAGTCTTCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR-3UTR CAA 90 bp CTCCACCAAGATCTGAGCCACGCCTCTCCCCATACTCCAAATGGGAAAGACACATCCCCGATCCAGTCCTaGCTCAAGCCACAGTGGCCT +
Preference number: 3 (lower is better)
Translates to: LHQDLSHASPHTPNGKDTSPIQS*LKPQWP
Trigger: AGGCCACTGTGGCTTGAGCAAGGACTGGATCGGGGA...TGTGTCTTTCCCATTTGGAGTATGGGGAGAGGCGTGGCTCAGATCTTGGTGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR GCA 72 bp GATAAGGAACTGGAGGTGAGGTGGAATGGTCTCTGCTaGAAAGCTGCACAGGTCTGGAGGCCACGCCTCCAT +
Preference number: 3 (lower is better)
Translates to: DKELEVRWNGLC*KAAQVWRPRLH
Trigger: ATGGAGGCGTGGCCTCCAGACCTGTGCAGCTTTGCAGCAGAGACCATTCCACCTCACCTCCAGTTCCTTATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR GCA 72 bp AAGGATAAGGAACTGGAGGTGAGGTGGAATGGTCTCTaGTGCAAAGCTGCACAGGTCTGGAGGCCACGCCTC +
Preference number: 3 (lower is better)
Translates to: KDKELEVRWNGL*CKAAQVWRPRL
Trigger: GAGGCGTGGCCTCCAGACCTGTGCAGCTTTGCAGCAGAGACCATTCCACCTCACCTCCAGTTCCTTATCCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR CCA 72 bp CTCCCCATACTCCAAATGGGAAAGACACAGGGTCTGTaGCCAGTGCCTTCATGCCTGGGCTATCTCTGCAGA +
Preference number: 3 (lower is better)
Translates to: LPILQMGKTQGL*PVPSCLGYLCR
Trigger: TCTGCAGAGATAGCCCAGGCATGAAGGCACTGGCCACAGACCCTGTGTCTTTCCCATTTGGAGTATGGGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR CCA 72 bp TGGACTACCTGTGCATCTCAGGGCAGGTGGGGGTCCTaGTTTACCAATAGGTTGCTAGGTACATGGAGAGGG +
Preference number: 3 (lower is better)
Translates to: WTTCASQGRWGS*FTNRLLGTWRG
Trigger: CCCTCTCCATGTACCTAGCAACCTATTGGTAAACCAGGACCCCCACCTGCCCTGAGATGCACAGGTAGTCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR-3UTR CAA 90 bp CACCACCTTCAGCTCGGCTCTTCTAGCACAGCATGCAGTGATCCACTCTCAACAACTTCATCGGTTACCTaGAGCCTACTCCCCTCCCTC +
Preference number: 3 (lower is better)
Translates to: HHLQLGSSSTACSDPLSTTSSVT*SLLPSL
Trigger: GAGGGAGGGGAGTAGGCTCAAGGTAACCGATGAAGT...TGTTGAGAGTGGATCACTGCATGCTGTGCTAGAAGAGCCGAGCTGAAGGTGGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR GCA 72 bp GAGAAGCTGATCCTACTTTCCAGAGTGGACTACCTGTaGATCTCAGGGCAGGTGGGGGTCCTGGTTTACCAA +
Preference number: 3 (lower is better)
Translates to: EKLILLSRVDYL*ISGQVGVLVYQ
Trigger: TTGGTAAACCAGGACCCCCACCTGCCCTGAGATGCACAGGTAGTCCACTCTGGAAAGTAGGATCAGCTTCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR CCA 72 bp AAAACACTGAAGACTCCTCCCATAACCCCCTCACCCTaGGTCCTCCCTTTCCATTACCACAGGCAGTACCTG +
Preference number: 3 (lower is better)
Translates to: KTLKTPPITPSP*VLPFHYHRQYL
Trigger: CAGGTACTGCCTGTGGTAATGGAAAGGGAGGACCCAGGGTGAGGGGGTTATGGGAGGAGTCTTCAGTGTTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR CCA 72 bp GGACAGGAGAGGGAAAGATGCATCGGAAGAAAAATATaGCTGCTGAGGCTCCTCTCCCCAAACAGCTCCCAA +
Preference number: 3 (lower is better)
Translates to: GQERERCIGRKI*LLRLLSPNSSQ
Trigger: TTGGGAGCTGTTTGGGGAGAGGAGCCTCAGCAGCCATATTTTTCTTCCGATGCATCTTTCCCTCTCCTGTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR CCA 72 bp GAAAGACACAGGGTCTGTGGCCAGTGCCTTCATGCCTaGGCTATCTCTGCAGAAACTCAAGTGTGTTTGCAG +
Preference number: 3 (lower is better)
Translates to: ERHRVCGQCLHA*AISAETQVCLQ
Trigger: CTGCAAACACACTTGAGTTTCTGCAGAGATAGCCCAGGCATGAAGGCACTGGCCACAGACCCTGTGTCTTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR CCA 72 bp TGGGGGTCCTGGTTTACCAATAGGTTGCTAGGTACATaGAGAGGGGTGCATGTGCATAGTGCATGCAGGCAA +
Preference number: 3 (lower is better)
Translates to: WGSWFTNRLLGT*RGVHVHSACRQ
Trigger: TTGCCTGCATGCACTATGCACATGCACCCCTCTCCATGTACCTAGCAACCTATTGGTAAACCAGGACCCCCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR CCA 72 bp TTTCCAGAGTGGACTACCTGTGCATCTCAGGGCAGGTaGGGGTCCTGGTTTACCAATAGGTTGCTAGGTACA +
Preference number: 3 (lower is better)
Translates to: FPEWTTCASQGR*GSWFTNRLLGT
Trigger: TGTACCTAGCAACCTATTGGTAAACCAGGACCCCCACCTGCCCTGAGATGCACAGGTAGTCCACTCTGGAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR-3UTR CAA 90 bp GTGTCGCTCACAACCATCACCTCTTCTCTTTCTGTAGTTCTGCTTAAGGCCAGGGCAGCATTGGGGGCTTaGGGTGAGCATCAAGAACCA +
Preference number: 3 (lower is better)
Translates to: VSLTTITSSLSVVLLKARAALGA*GEHQEP
Trigger: TGGTTCTTGATGCTCACCCAAAGCCCCCAATGCTGC...CCTGGCCTTAAGCAGAACTACAGAAAGAGAAGAGGTGATGGTTGTGAGCGACAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR-3UTR CAA 90 bp GAGGGAAAGATGCATCGGAAGAAAAATATGGCTGCTGAGGCTCCTCTCCCCAAACAAGCCACAGTGGCCTaGAGATACTCAGAGCTGTGT +
Preference number: 3 (lower is better)
Translates to: EGKMHRKKNMAAEAPLPKQATVA*RYSELC
Trigger: ACACAGCTCTGAGTATCTCAAGGCCACTGTGGCTTG...TTTGGGGAGAGGAGCCTCAGCAGCCATATTTTTCTTCCGATGCATCTTTCCCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR GCA 72 bp CCACACCACCTTCAGCTCGGCTCTTCTAGCACAGCATaGAGTGATCCACTCTCAACAGGACTTCAGAAAACA +
Preference number: 3 (lower is better)
Translates to: PHHLQLGSSSTA*SDPLSTGLQKT
Trigger: TGTTTTCTGAAGTCCTGTTGAGAGTGGATCACTGCATGCTGTGCTAGAAGAGCCGAGCTGAAGGTGGTGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR GCA 72 bp ATGGGAAAGACACAGGGTCTGTGGCCAGTGCCTTCATaGCTGGGCTATCTCTGCAGAAACTCAAGTGTGTTT +
Preference number: 3 (lower is better)
Translates to: MGKTQGLWPVPS*LGYLCRNSSVF
Trigger: AAACACACTTGAGTTTCTGCAGAGATAGCCCAGGCATGAAGGCACTGGCCACAGACCCTGTGTCTTTCCCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR GCA 72 bp TACTCCAAATGGGAAAGACACAGGGTCTGTGGCCAGTaGCTTCATGCCTGGGCTATCTCTGCAGAAACTCAA +
Preference number: 3 (lower is better)
Translates to: YSKWERHRVCGQ*LHAWAISAETQ
Trigger: TTGAGTTTCTGCAGAGATAGCCCAGGCATGAAGGCACTGGCCACAGACCCTGTGTCTTTCCCATTTGGAGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR GCA 72 bp GAGTCCCAGCTTACTAAACTATTCCCTATGCTTGCCTaGCTTGAAGCCAGTAAGGAAGAACCCAGGACAGGA +
Preference number: 3 (lower is better)
Translates to: ESQLTKLFPMLA*LEASKEEPRTG
Trigger: TCCTGTCCTGGGTTCTTCCTTACTGGCTTCAAGGCAGGCAAGCATAGGGAATAGTTTAGTAAGCTGGGACTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR CCA 72 bp AAAACAAAGAGACATAGAGGGTCAAGGGAGGAAGACTaGGCCCTGGGAGGGAAACAGGACAGAAAGGATAAG +
Preference number: 3 (lower is better)
Translates to: KTKRHRGSREED*ALGGKQDRKDK
Trigger: CTTATCCTTTCTGTCCTGTTTCCCTCCCAGGGCCCAGTCTTCCTCCCTTGACCCTCTATGTCTCTTTGTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR CCA 72 bp AGACTAAAGGAAGGAGGAGATGCTATTGGCATAGTTTaGGTGGTTCTCTATTTTGAAAGGCAGGCTTGGAAT +
Preference number: 3 (lower is better)
Translates to: RLKEGGDAIGIV*VVLYFERQAWN
Trigger: ATTCCAAGCCTGCCTTTCAAAATAGAGAACCACCCAAACTATGCCAATAGCATCTCCTCCTTCCTTTAGTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS-3UTR TCA 90 bp CACCATCACCACCACCACCACCTCCACCAAGATCTGAGCCACGCCTCTCCCCATTCCAGCAAGTGCCTGTaGACCAGGCCCTCCCCCTGC +
Preference number: 4 (lower is better)
Translates to: HHHHHHHLHQDLSHASPHSSKCL*TRPSPC
Trigger: GCAGGGGGAGGGCCTGGTTCACAGGCACTTGCTGGA...ATGGGGAGAGGCGTGGCTCAGATCTTGGTGGAGGTGGTGGTGGTGGTGATGGTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS-3UTR GCA 90 bp CTCCACCAAGATCTGAGCCACGCCTCTCCCCATACTCCAAATGGGAAAGACACAGGCCAGGGCGGGCAGTaGGTCCCGGTGTGGCCCAAA +
Preference number: 4 (lower is better)
Translates to: LHQDLSHASPHTPNGKDTGQGGQ*VPVWPK
Trigger: TTTGGGCCACACCGGGACGCACTGCCCGCCCTGGCC...TGTGTCTTTCCCATTTGGAGTATGGGGAGAGGCGTGGCTCAGATCTTGGTGGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS-3UTR GCA 90 bp CCATTACCACAGGCAGTACCTGAGACCTGGAGCCCACCTGGGCACCACCTTAAAAGCACGGGCTCCGCTTaGTCCCCAGCAGGTCCTTGG +
Preference number: 4 (lower is better)
Translates to: PLPQAVPETWSPPGHHLKSTGSA*SPAGPW
Trigger: CCAAGGACCTGCTGGGGAGCAAGCGGAGCCCGTGCT...TTTAAGGTGGTGCCCAGGTGGGCTCCAGGTCTCAGGTACTGCCTGTGGTAATGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS-3UTR CCA 90 bp CTGAAGACTCCTCCCATAACCCCCTCACCCTGGGTCCTCCCTTTCCATTACCACTCCACCAACTCCACGTaGGGCCCTGCCTCAGGGTCT +
Preference number: 4 (lower is better)
Translates to: LKTPPITPSPWVLPFHYHSTNST*GPASGS
Trigger: AGACCCTGAGGCAGGGCCCCACGTGGAGTTGGTGGA...GTGGTAATGGAAAGGGAGGACCCAGGGTGAGGGGGTTATGGGAGGAGTCTTCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS-3UTR CCA 90 bp CTGAAGACTCCTCCCATAACCCCCTCACCCTGGGTCCTCCCTTTCCATTACCACTCCCCAGCAGGTCCTTaGCAGGACCCGGTACCGCAT +
Preference number: 4 (lower is better)
Translates to: LKTPPITPSPWVLPFHYHSPAGP*QDPVPH
Trigger: ATGCGGTACCGGGTCCTGCCAAGGACCTGCTGGGGA...GTGGTAATGGAAAGGGAGGACCCAGGGTGAGGGGGTTATGGGAGGAGTCTTCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS-3UTR TCA 90 bp TTGCCTGCCTTGAAGCCAGTAAGGAAGAACCCAGGACAGGACAAGGCTTGTGGGGGCTCACCAGGTTGCTaGGCAGCCAGGGAGAGTCAG +
Preference number: 4 (lower is better)
Translates to: LPALKPVRKNPGQDKACGGSPGC*AARESQ
Trigger: CTGACTCTCCCTGGCTGCTCAGCAACCTGGTGAGCC...CCCACAAGCCTTGTCCTGTCCTGGGTTCTTCCTTACTGGCTTCAAGGCAGGCAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS-3UTR TCA 90 bp CCATTACCACAGGCAGTACCTGAGACCTGGAGCCCACCTGGGCACCACCTTAAACCTCGATGGAGTTGGTaGGATGTGATGAGCGGCCAC +
Preference number: 4 (lower is better)
Translates to: PLPQAVPETWSPPGHHLKPRWSW*DVMSGH
Trigger: GTGGCCGCTCATCACATCTCACCAACTCCATCGAGG...TTTAAGGTGGTGCCCAGGTGGGCTCCAGGTCTCAGGTACTGCCTGTGGTAATGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS-3UTR GCA 90 bp GAGGGAACCACTGGAGGGAACCTGACTTCATCGGTTACCTTGAGCCTACTCCCCGCCCTCCCCCTGCTTTaGCCTGCCTATCTCCATCTT +
Preference number: 4 (lower is better)
Translates to: EGTTGGNLTSSVTLSLLPALPLL*PAYLHL
Trigger: AAGATGGAGATAGGCAGGGCAAAGCAGGGGGAGGGC...GGGGAGTAGGCTCAAGGTAACCGATGAAGTCAGGTTCCCTCCAGTGGTTCCCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS-3UTR GCA 90 bp CACCACCTTCAGCTCGGCTCTTCTAGCACAGCATGCAGTGATCCACTCTCAACAACCAGGCCCTCCCCCTaGTTTGCCCTGCCTATCTCC +
Preference number: 4 (lower is better)
Translates to: HHLQLGSSSTACSDPLSTTRPSP*FALPIS
Trigger: GGAGATAGGCAGGGCAAAGCAGGGGGAGGGCCTGGT...TGTTGAGAGTGGATCACTGCATGCTGTGCTAGAAGAGCCGAGCTGAAGGTGGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS-3UTR GCA 90 bp CTCCACCAAGATCTGAGCCACGCCTCTCCCCATACTCCAAATGGGAAAGACACAATGGCGCTCCTCTTCTaGTGGCAGGAGAGGGGCTGG +
Preference number: 4 (lower is better)
Translates to: LHQDLSHASPHTPNGKDTMALLF*WQERGW
Trigger: CCAGCCCCTCTCCTGCCAGCAGAAGAGGAGCGCCAT...TGTGTCTTTCCCATTTGGAGTATGGGGAGAGGCGTGGCTCAGATCTTGGTGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS-3UTR GCA 90 bp TTGCCTGCCTTGAAGCCAGTAAGGAAGAACCCAGGACAGGACAAGGCTTGTGGGAAATGGACGAGATCATaGGCCCTAGGCGAGCGCCGC +
Preference number: 4 (lower is better)
Translates to: LPALKPVRKNPGQDKACGKWTRS*ALGERR
Trigger: GCGGCGCTCGCCTAGGGCGCATGATCTCGTCCATTT...CCCACAAGCCTTGTCCTGTCCTGGGTTCTTCCTTACTGGCTTCAAGGCAGGCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS-3UTR GCA 90 bp GAGGGAACCACTGGAGGGAACCTGACTTCATCGGTTACCTTGAGCCTACTCCCCCACTGGCCTCGCAGCTaGTGTCCTCTTCACTGTCGT +
Preference number: 4 (lower is better)
Translates to: EGTTGGNLTSSVTLSLLPHWPRS*CPLHCR
Trigger: ACGACAGTGAAGAGGACAGCAGCTGCGAGGCCAGTG...GGGGAGTAGGCTCAAGGTAACCGATGAAGTCAGGTTCCCTCCAGTGGTTCCCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS-3UTR CCA 90 bp CTCCACCAAGATCTGAGCCACGCCTCTCCCCATACTCCAAATGGGAAAGACACATCCAGGCTTATGTCCTaGGGAGGCCTGCAGCCGGGA +
Preference number: 4 (lower is better)
Translates to: LHQDLSHASPHTPNGKDTSRLMS*GGLQPG
Trigger: TCCCGGCTGCAGGCCTCCCCAGGACATAAGCCTGGA...TGTGTCTTTCCCATTTGGAGTATGGGGAGAGGCGTGGCTCAGATCTTGGTGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS-3UTR CCA 90 bp GAAGCTGATCCTACTTTCCAGAGTGGACTACCTGTGCATCTCAGGGCAGGTGGGGGAACAAATAGGGTGTaGCTGCTCCGAGCGGCCCAG +
Preference number: 4 (lower is better)
Translates to: EADPTFQSGLPVHLRAGGGTNRV*LLRAAQ
Trigger: CTGGGCCGCTCGGAGCAGCCACACCCTATTTGTTCC...CCCACCTGCCCTGAGATGCACAGGTAGTCCACTCTGGAAAGTAGGATCAGCTTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS-3UTR CCA 90 bp CGCCTCTCCCCATACTCCAAATGGGAAAGACACAGGGTCTGTGGCCAGTGCCTTGGTGGCTCTGGGGGCTaGTTCCCTTCACAGTCACAA +
Preference number: 4 (lower is better)
Translates to: RLSPYSKWERHRVCGQCLGGSGG*FPSQSQ
Trigger: TTGTGACTGTGAAGGGAACCAGCCCCCAGAGCCACC...AAGGCACTGGCCACAGACCCTGTGTCTTTCCCATTTGGAGTATGGGGAGAGGCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS-3UTR CCA 90 bp CACCACCTTCAGCTCGGCTCTTCTAGCACAGCATGCAGTGATCCACTCTCAACACTCAGGCTCCGAGGCTaGGGACGAAGCCTCCTCGAT +
Preference number: 4 (lower is better)
Translates to: HHLQLGSSSTACSDPLSTLRLRG*GRSLLD
Trigger: ATCGAGGAGGCTTCGTCCCCAGCCTCGGAGCCTGAG...TGTTGAGAGTGGATCACTGCATGCTGTGCTAGAAGAGCCGAGCTGAAGGTGGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS-3UTR GCA 90 bp AGTGGACTACCTGTGCATCTCAGGGCAGGTGGGGGTCCTGGTTTACCAATAGGTCCAGGAGGATGGGGGTaGAGAGGTAAAGCCTCCGTT +
Preference number: 4 (lower is better)
Translates to: SGLPVHLRAGGGPGLPIGPGGWG*RGKASV
Trigger: AACGGAGGCTTTACCTCTGCACCCCCATCCTCCTGG...ACCTATTGGTAAACCAGGACCCCCACCTGCCCTGAGATGCACAGGTAGTCCACT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS-3UTR GCA 90 bp GAGGGAAAGATGCATCGGAAGAAAAATATGGCTGCTGAGGCTCCTCTCCCCAAACTCCACGTGGGGCCCTaGCTCAGGGTCTTGGCAGTC +
Preference number: 4 (lower is better)
Translates to: EGKMHRKKNMAAEAPLPKLHVGP*LRVLAV
Trigger: GACTGCCAAGACCCTGAGGCAGGGCCCCACGTGGAG...TTTGGGGAGAGGAGCCTCAGCAGCCATATTTTTCTTCCGATGCATCTTTCCCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS-3UTR TCA 90 bp TTGCCTGCCTTGAAGCCAGTAAGGAAGAACCCAGGACAGGACAAGGCTTGTGGGGGCCACAGTCGTCCGTaGTCTCAGACAGGTCTTCAT +
Preference number: 4 (lower is better)
Translates to: LPALKPVRKNPGQDKACGGHSRP*SQTGLH
Trigger: ATGAAGACCTGTCTGAGATCACGGACGACTGTGGCC...CCCACAAGCCTTGTCCTGTCCTGGGTTCTTCCTTACTGGCTTCAAGGCAGGCAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS-3UTR TCA 90 bp AGTGGACTACCTGTGCATCTCAGGGCAGGTGGGGGTCCTGGTTTACCAATAGGTACTTCTTGGAGAAGGTaGGGTCGGGACTGTCAGGAG +
Preference number: 4 (lower is better)
Translates to: SGLPVHLRAGGGPGLPIGTSWRR*GRDCQE
Trigger: CTCCTGACAGTCCCGACCTCACCTTCTCCAAGAAGT...ACCTATTGGTAAACCAGGACCCCCACCTGCCCTGAGATGCACAGGTAGTCCACT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS-3UTR GCA 90 bp CCAAATGTCCCCGATCCAGTCCTTGCTCAAGCCACAGTGGCCTTGAGATACTCAACAGCCCGGTGCGTTTaGTCTCTCTCCTCCCCATTC +
Preference number: 4 (lower is better)
Translates to: PNVPDPVLAQATVALRYSTARCV*SLSSPF
Trigger: GAATGGGGAGGAGAGAGAGCAAACGCACCGGGCTGT...TGAGTATCTCAAGGCCACTGTGGCTTGAGCAAGGACTGGATCGGGGACATTTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS-3UTR CCA 90 bp GTGTCGCTCACAACCATCACCTCTTCTCTTTCTGTAGTTCTGCTTAAGGCCAGGGGCCAGGGCAACGAATaGGCGAGGAGCCCTCAGAGA +
Preference number: 4 (lower is better)
Translates to: VSLTTITSSLSVVLLKARGQGNE*ARSPQR
Trigger: TCTCTGAGGGCTCCTCGCCCATTCGTTGCCCTGGCC...CCTGGCCTTAAGCAGAACTACAGAAAGAGAAGAGGTGATGGTTGTGAGCGACAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS-3UTR CCA 90 bp TGCATGTGCATAGTGCATGCAGGCAAGGATGTCAGGCTGCCAAGTGCATCATTAGCAGGAGGGCGCAGGTaGACCGTTAGTTTCCGGGCT +
Preference number: 4 (lower is better)
Translates to: CMCIVHAGKDVRLPSASLAGGRR*TVSFRA
Trigger: AGCCCGGAAACTAACGGTCCACCTGCGCCCTCCTGC...TAATGATGCACTTGGCAGCCTGACATCCTTGCCTGCATGCACTATGCACATGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS-3UTR TCA 90 bp GAGGGAAAGATGCATCGGAAGAAAAATATGGCTGCTGAGGCTCCTCTCCCCAAAATCCCATTGCCCTGGTaGCACGGTACCTCCACGGAG +
Preference number: 4 (lower is better)
Translates to: EGKMHRKKNMAAEAPLPKIPLPW*HGTSTE
Trigger: CTCCGTGGAGGTACCGTGTCACCAGGGCAATGGGAT...TTTGGGGAGAGGAGCCTCAGCAGCCATATTTTTCTTCCGATGCATCTTTCCCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS-3UTR GCA 90 bp TCGCTCACAACCATCACCTCTTCTCTTTCTGTAGTTCTGCTTAAGGCCAGGGGCCCCCCTGCTTTGCCCTaGCTATCTCCATCTTCCTCC +
Preference number: 4 (lower is better)
Translates to: SLTTITSSLSVVLLKARGPPALP*LSPSSS
Trigger: GGAGGAAGATGGAGATAGGCAGGGCAAAGCAGGGGG...GCCCCTGGCCTTAAGCAGAACTACAGAAAGAGAAGAGGTGATGGTTGTGAGCGA
54% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS-3UTR GCA 90 bp CTCCACCAAGATCTGAGCCACGCCTCTCCCCATACTCCAAATGGGAAAGACACATCTGGAAGAAGTGGCTaGAGCGCTGGAACTCAGGTC +
Preference number: 4 (lower is better)
Translates to: LHQDLSHASPHTPNGKDTSGRSG*SAGTQV
Trigger: GACCTGAGTTCCAGCGCTGCAGCCACTTCTTCCAGA...TGTGTCTTTCCCATTTGGAGTATGGGGAGAGGCGTGGCTCAGATCTTGGTGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS-3UTR CCA 90 bp CACCACCTTCAGCTCGGCTCTTCTAGCACAGCATGCAGTGATCCACTCTCAACAGTGGGTCGGAGCTTGTaGGACTCTTCTAGGGAAGGA +
Preference number: 4 (lower is better)
Translates to: HHLQLGSSSTACSDPLSTVGRSL*DSSREG
Trigger: TCCTTCCCTAGAAGAGTCCCACAAGCTCCGACCCAC...TGTTGAGAGTGGATCACTGCATGCTGTGCTAGAAGAGCCGAGCTGAAGGTGGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS-3UTR CCA 90 bp GAGGGAAAGATGCATCGGAAGAAAAATATGGCTGCTGAGGCTCCTCTCCCCAAACTCCTGCCAGGAGGATaGGGGTGCAGAGGTAAAGCC +
Preference number: 4 (lower is better)
Translates to: EGKMHRKKNMAAEAPLPKLLPGG*GCRGKA
Trigger: GGCTTTACCTCTGCACCCCCATCCTCCTGGCAGGAG...TTTGGGGAGAGGAGCCTCAGCAGCCATATTTTTCTTCCGATGCATCTTTCCCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS-3UTR CCA 90 bp TCGCTCACAACCATCACCTCTTCTCTTTCTGTAGTTCTGCTTAAGGCCAGGGGCGCAGGAGATAAGCACTaGCCAGGGCAACGAATGGGC +
Preference number: 4 (lower is better)
Translates to: SLTTITSSLSVVLLKARGAGDKH*PGQRMG
Trigger: GCCCATTCGTTGCCCTGGCCAGTGCTTATCTCCTGC...GCCCCTGGCCTTAAGCAGAACTACAGAAAGAGAAGAGGTGATGGTTGTGAGCGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS-3UTR CCA 90 bp ATGGGAAAGACACAGGGTCTGTGGCCAGTGCCTTCATGCCTGGGCTATCTCTGCTTCATCTGGAAGAAGTaGCTGCAGCGCTGGAACTCA +
Preference number: 4 (lower is better)
Translates to: MGKTQGLWPVPSCLGYLCFIWKK*LQRWNS
Trigger: TGAGTTCCAGCGCTGCAGCCACTTCTTCCAGATGAA...GCAGAGATAGCCCAGGCATGAAGGCACTGGCCACAGACCCTGTGTCTTTCCCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS-3UTR CCA 90 bp CCATTACCACAGGCAGTACCTGAGACCTGGAGCCCACCTGGGCACCACCTTAAAGAGATGTTCTTCATCTaGAAGAAGTGGCTGCAGCGC +
Preference number: 4 (lower is better)
Translates to: PLPQAVPETWSPPGHHLKEMFFI*KKWLQR
Trigger: GCGCTGCAGCCACTTCTTCCAGATGAAGAACATCTC...TTTAAGGTGGTGCCCAGGTGGGCTCCAGGTCTCAGGTACTGCCTGTGGTAATGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR CAA 72 bp TTTGGGGGTGCCCTCCTCCTAGCAGCATTGGGGGCTTaGGGTGAGCATCAAGAACCACCTAGTTATCCTAAG +
Preference number: 4 (lower is better)
Translates to: FGGALLLAALGA*GEHQEPPSYPK
Trigger: CTTAGGATAACTAGGTGGTTCTTGATGCTCACCCAAAGCCCCCAATGCTGCTAGGAGGAGGGCACCCCCAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR CAA 72 bp TCTCAGGGCAGGTGGGGGTCCTGGTTTACCAATAGGTaGCTAGGTACATGGAGAGGGGTGCATGTGCATAGT +
Preference number: 4 (lower is better)
Translates to: SQGRWGSWFTNR*LGTWRGVHVHS
Trigger: ACTATGCACATGCACCCCTCTCCATGTACCTAGCAACCTATTGGTAAACCAGGACCCCCACCTGCCCTGAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS-3UTR TCA 90 bp CACCATCACCACCACCACCACCTCCACCAAGATCTGAGCCACGCCTCTCCCCATATGACAGCCACAGAATaGGATGTTCTTCATCTGGAA +
Preference number: 4 (lower is better)
Translates to: HHHHHHHLHQDLSHASPHMTATE*DVLHLE
Trigger: TTCCAGATGAAGAACATCTCATTCTGTGGCTGTCAT...ATGGGGAGAGGCGTGGCTCAGATCTTGGTGGAGGTGGTGGTGGTGGTGATGGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS-3UTR CCA 90 bp GTGTCGCTCACAACCATCACCTCTTCTCTTTCTGTAGTTCTGCTTAAGGCCAGGCTGTTGGTGTCATCCTaGCCCACAGGCAGGAAGGCA +
Preference number: 4 (lower is better)
Translates to: VSLTTITSSLSVVLLKARLLVSS*PTGRKA
Trigger: TGCCTTCCTGCCTGTGGGCCAGGATGACACCAACAG...CCTGGCCTTAAGCAGAACTACAGAAAGAGAAGAGGTGATGGTTGTGAGCGACAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS-3UTR CCA 90 bp CACCACCTTCAGCTCGGCTCTTCTAGCACAGCATGCAGTGATCCACTCTCAACAACTCGTATTCGCTGTTaGTGTCATCCTGGCCCACAG +
Preference number: 4 (lower is better)
Translates to: HHLQLGSSSTACSDPLSTTRIRC*CHPGPQ
Trigger: CTGTGGGCCAGGATGACACCAACAGCGAATACGAGT...TGTTGAGAGTGGATCACTGCATGCTGTGCTAGAAGAGCCGAGCTGAAGGTGGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS-3UTR CCA 90 bp GTGTCGCTCACAACCATCACCTCTTCTCTTTCTGTAGTTCTGCTTAAGGCCAGGCACACTCCGCGCCACTaGTCTCATAGACTCCTGGGA +
Preference number: 4 (lower is better)
Translates to: VSLTTITSSLSVVLLKARHTPRH*SHRLLG
Trigger: TCCCAGGAGTCTATGAGACCAGTGGCGCGGAGTGTG...CCTGGCCTTAAGCAGAACTACAGAAAGAGAAGAGGTGATGGTTGTGAGCGACAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS-3UTR TCA 90 bp TGCATGTGCATAGTGCATGCAGGCAAGGATGTCAGGCTGCCAAGTGCATCATTACGCCGGTGCGCATGTTaGAGCCACGAAACCAAAAGT +
Preference number: 4 (lower is better)
Translates to: CMCIVHAGKDVRLPSASLRRCAC*SHETKS
Trigger: ACTTTTGGTTTCGTGGCTTCAACATGCGCACCGGCG...TAATGATGCACTTGGCAGCCTGACATCCTTGCCTGCATGCACTATGCACATGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS-3UTR GCA 90 bp TCGCTCACAACCATCACCTCTTCTCTTTCTGTAGTTCTGCTTAAGGCCAGGGGCAGCTCTAGCTGCGTGTaGTCATCCACCACTAGTGTG +
Preference number: 4 (lower is better)
Translates to: SLTTITSSLSVVLLKARGSSSCV*SSTTSV
Trigger: CACACTAGTGGTGGATGAGCACACGCAGCTAGAGCT...GCCCCTGGCCTTAAGCAGAACTACAGAAAGAGAAGAGGTGATGGTTGTGAGCGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS-3UTR CCA 90 bp TCGCTCACAACCATCACCTCTTCTCTTTCTGTAGTTCTGCTTAAGGCCAGGGGCGCTCTGTCTCCGAAATaGACGAGATCATGCGCCCTA +
Preference number: 4 (lower is better)
Translates to: SLTTITSSLSVVLLKARGALSPK*TRSCAL
Trigger: TAGGGCGCATGATCTCGTCCATTTCGGAGACAGAGC...GCCCCTGGCCTTAAGCAGAACTACAGAAAGAGAAGAGGTGATGGTTGTGAGCGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS-3UTR CCA 90 bp CCAAATGTCCCCGATCCAGTCCTTGCTCAAGCCACAGTGGCCTTGAGATACTCAACAGCGAGTGAAAGGTaGAGAGAGAAAACATCTCCG +
Preference number: 4 (lower is better)
Translates to: PNVPDPVLAQATVALRYSTASER*REKTSP
Trigger: CGGAGATGTTTTCTCTCTCCACCTTTCACTCGCTGT...TGAGTATCTCAAGGCCACTGTGGCTTGAGCAAGGACTGGATCGGGGACATTTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS-3UTR GCA 90 bp GTGGAGTCCCAGCTTACTAAACTATTCCCTATGCTTGCCTGCCTTGAAGCCAGTAAAGTCATCCTCTTCTaGTTCCACCAGCACAGGGTC +
Preference number: 4 (lower is better)
Translates to: VESQLTKLFPMLACLEASKVILF*FHQHRV
Trigger: GACCCTGTGCTGGTGGAAGCAGAAGAGGATGACTTT...ACTGGCTTCAAGGCAGGCAAGCATAGGGAATAGTTTAGTAAGCTGGGACTCCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR CAA 72 bp CCCAGCTTACTAAACTATTCCCTATGCTTGCCTGCCTaGAAGCCAGTAAGGAAGAACCCAGGACAGGACAAG +
Preference number: 4 (lower is better)
Translates to: PSLLNYSLCLPA*KPVRKNPGQDK
Trigger: CTTGTCCTGTCCTGGGTTCTTCCTTACTGGCTTCAAGGCAGGCAAGCATAGGGAATAGTTTAGTAAGCTGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS-3UTR CCA 90 bp AGTGGACTACCTGTGCATCTCAGGGCAGGTGGGGGTCCTGGTTTACCAATAGGTTCCTGGAAATCATCTTaGAAGGAACAAATAGGGTGT +
Preference number: 4 (lower is better)
Translates to: SGLPVHLRAGGGPGLPIGSWKSS*KEQIGC
Trigger: ACACCCTATTTGTTCCTTCCAAGATGATTTCCAGGA...ACCTATTGGTAAACCAGGACCCCCACCTGCCCTGAGATGCACAGGTAGTCCACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR CAA 72 bp AAGTTCACAGTCATCCTGTCTCAGCCTCCAGTGTTCTaGGATGTTAAGTATGTGCTACCACGCCAGGCTAAG +
Preference number: 4 (lower is better)
Translates to: KFTVILSQPPVF*DVKYVLPRQAK
Trigger: CTTAGCCTGGCGTGGTAGCACATACTTAACATCCAAGAACACTGGAGGCTGAGACAGGATGACTGTGAACTT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR CAA 72 bp AAGTGGAGTCCCAGCTTACTAAACTATTCCCTATGCTaGCCTGCCTTGAAGCCAGTAAGGAAGAACCCAGGA +
Preference number: 4 (lower is better)
Translates to: KWSPSLLNYSLC*PALKPVRKNPG
Trigger: TCCTGGGTTCTTCCTTACTGGCTTCAAGGCAGGCAAGCATAGGGAATAGTTTAGTAAGCTGGGACTCCACTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR CAA 72 bp ATTTTTGAGACCCACAAACATTGTTTCTCAAGTTGTTaGTGGCACACACACACCACCACCACCATCACCACC +
Preference number: 4 (lower is better)
Translates to: IFETHKHCFSSC*WHTHTTTTITT
Trigger: GGTGGTGATGGTGGTGGTGGTGTGTGTGTGCCACAAACAACTTGAGAAACAATGTTTGTGGGTCTCAAAAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
3UTR CAA 72 bp TTTTATTTTTATGTAGCAAACTGTCGAAACATCCCTTaGTTCACTGTGTCGCTCACAACCATCACCTCTTCT +
Preference number: 4 (lower is better)
Translates to: FYFYVANCRNIP*FTVSLTTITSS
Trigger: AGAAGAGGTGATGGTTGTGAGCGACACAGTGAACAAAGGGATGTTTCGACAGTTTGCTACATAAAAATAAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS CCA 90 bp TGTGACGCAGCCTCTTCTGGCAGGCGTGGGGCAGGAGATAAGCACTaGCCAGGGCAACGAATGGGCGAGGAGCCCTCAGAGATCATGCGG +
Preference number: 5 (lower is better)
Translates to: CDAASSGRRGAGDKH*PGQRMGEEPSEIMR
Trigger: CCGCATGATCTCTGAGGGCTCCTCGCCCATTCGTTGCCCTGGCCAGTGCTTATCTCCTGCCCCACGCCTGCCAGAAGAGGCTGCGTCACA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS CCA 90 bp GTGTCCATGTCCACCAACTCCACGTGGGGCCCTGCCTCAGGGTCTTaGCAGTCCTGGGGTACCGAGTTGGCCTGTGACGCAGCCTCTTCT +
Preference number: 5 (lower is better)
Translates to: VSMSTNSTWGPASGS*QSWGTELACDAASS
Trigger: AGAAGAGGCTGCGTCACAGGCCAACTCGGTACCCCAGGACTGCCAAGACCCTGAGGCAGGGCCCCACGTGGAGTTGGTGGACATGGACAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS TCA 90 bp GAATGGGCGAGGAGCCCTCAGAGATCATGCGGCTCACCAGGTTGCTaGGCAGCCAGGGAGAGTCAGCATCCTCGCTCAGGTCAGGCTCAG +
Preference number: 5 (lower is better)
Translates to: EWARSPQRSCGSPGC*AARESQHPRSGQAQ
Trigger: CTGAGCCTGACCTGAGCGAGGATGCTGACTCTCCCTGGCTGCTCAGCAACCTGGTGAGCCGCATGATCTCTGAGGGCTCCTCGCCCATTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS-3UTR CAA 90 bp CGCCTCTCCCCATACTCCAAATGGGAAAGACACAGGGTCTGTGGCCAGTGCCTTCTCCCCAGCAGGTCCTaGGCAGGACCCGGTACCGCA +
Preference number: 5 (lower is better)
Translates to: RLSPYSKWERHRVCGQCLLPSRS*AGPGTA
Trigger: TGCGGTACCGGGTCCTGCCAAGGACCTGCTGGGGAG...AAGGCACTGGCCACAGACCCTGTGTCTTTCCCATTTGGAGTATGGGGAGAGGCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS-3UTR CAA 90 bp AGGGCAGGAGGGAACCACTGGAGGGAACCTGACTTCATCGGTTACCTTGAGCCTCAGCACGGGCTCCGCTaGCTCCCCAGCAGGTCCTTG +
Preference number: 5 (lower is better)
Translates to: RAGGNHWREPDFIGYLEPQHGLR*LPSRSL
Trigger: CAAGGACCTGCTGGGGAGCAAGCGGAGCCCGTGCTG...AGGCTCAAGGTAACCGATGAAGTCAGGTTCCCTCCAGTGGTTCCCTCCTGCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS GCA 90 bp TGGTGGCTCTGGGGGCTGGTTCCCTTCACAGTCACAACCAGGGCGTaGAAGGGACTGTACTTCATGGCGCTCCTCTTCTGCTGGCAGGAG +
Preference number: 5 (lower is better)
Translates to: WWLWGLVPFTVTTRA*KGLYFMALLFCWQE
Trigger: CTCCTGCCAGCAGAAGAGGAGCGCCATGAAGTACAGTCCCTTGCACGCCCTGGTTGTGACTGTGAAGGGAACCAGCCCCCAGAGCCACCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS-3UTR CAA 90 bp CACCATCACCACCACCACCACCTCCACCAAGATCTGAGCCACGCCTCTCCCCATGCCTCCTCGATGGAGTaGGTGAGATGTGATGAGCGG +
Preference number: 5 (lower is better)
Translates to: HHHHHHHLHQDLSHASPHASSME*VRCDER
Trigger: CCGCTCATCACATCTCACCAACTCCATCGAGGAGGC...ATGGGGAGAGGCGTGGCTCAGATCTTGGTGGAGGTGGTGGTGGTGGTGATGGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS-3UTR CAA 90 bp CTCCACCAAGATCTGAGCCACGCCTCTCCCCATACTCCAAATGGGAAAGACACAATGCGGCTCACCAGGTaGCTGAGCAGCCAGGGAGAG +
Preference number: 5 (lower is better)
Translates to: LHQDLSHASPHTPNGKDTMRLTR*LSSQGE
Trigger: CTCTCCCTGGCTGCTCAGCAACCTGGTGAGCCGCAT...TGTGTCTTTCCCATTTGGAGTATGGGGAGAGGCGTGGCTCAGATCTTGGTGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS TCA 90 bp GGGCATAGAAGGCAGGGAACACTCCACGCTCGCCGGTGCGCATGTTaGAGCCACGAAACCAAAAGTCATCCTCTTCTGCTTCCACCAGCA +
Preference number: 5 (lower is better)
Translates to: GHRRQGTLHARRCAC*SHETKSHPLLLPPA
Trigger: TGCTGGTGGAAGCAGAAGAGGATGACTTTTGGTTTCGTGGCTTCAACATGCGCACCGGCGAGCGTGGAGTGTTCCCTGCCTTCTATGCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS-3UTR CAA 90 bp TGCATGTGCATAGTGCATGCAGGCAAGGATGTCAGGCTGCCAAGTGCATCATTACCCTGCCTCAGGGTCTaGGCAGTCCTGGGGTACCGA +
Preference number: 5 (lower is better)
Translates to: CMCIVHAGKDVRLPSASLPCLRV*AVLGYR
Trigger: TCGGTACCCCAGGACTGCCAAGACCCTGAGGCAGGG...TAATGATGCACTTGGCAGCCTGACATCCTTGCCTGCATGCACTATGCACATGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS-3UTR CAA 90 bp TGCATGTGCATAGTGCATGCAGGCAAGGATGTCAGGCTGCCAAGTGCATCATTAGGCCCTCCCCCTGCTTaGCCCTGCCTATCTCCATCT +
Preference number: 5 (lower is better)
Translates to: CMCIVHAGKDVRLPSASLGPPPA*PCLSPS
Trigger: AGATGGAGATAGGCAGGGCAAAGCAGGGGGAGGGCC...TAATGATGCACTTGGCAGCCTGACATCCTTGCCTGCATGCACTATGCACATGCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS CCA 90 bp TGTGCTCCAAGTGTAGTCAGATGGAGAGTGGTGGGTCGGAGCTTGTaGGACTCTTCTAGGGAAGGAGAGGGAATAAGGGAGTCTCCAGCA +
Preference number: 5 (lower is better)
Translates to: CAPSVVRWRVVGRSL*DSSREGEGIRESPA
Trigger: TGCTGGAGACTCCCTTATTCCCTCTCCTTCCCTAGAAGAGTCCCACAAGCTCCGACCCACCACTCTCCATCTGACTACACTTGGAGCACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS CCA 90 bp TCCTCCTCGTTGTCGTCGATCATCTCAAACTCCTGGAAATCATCTTaGAAGGAACAAATAGGGTGTGGCTGCTCCGAGCGGCCCAGAGAG +
Preference number: 5 (lower is better)
Translates to: SSSLSSIISNSWKSS*KEQIGCGCSERPRE
Trigger: CTCTCTGGGCCGCTCGGAGCAGCCACACCCTATTTGTTCCTTCCAAGATGATTTCCAGGAGTTTGAGATGATCGACGACAACGAGGAGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS-3UTR CAA 90 bp CCAAATGTCCCCGATCCAGTCCTTGCTCAAGCCACAGTGGCCTTGAGATACTCAGGCTGTGGCAATCTTTaGCATGGCTGCACACAGGAT +
Preference number: 5 (lower is better)
Translates to: PNVPDPVLAQATVALRYSGCGNL*HGCTQD
Trigger: ATCCTGTGTGCAGCCATGCAAAAGATTGCCACAGCC...TGAGTATCTCAAGGCCACTGTGGCTTGAGCAAGGACTGGATCGGGGACATTTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS-3UTR CAA 90 bp CCAAATGTCCCCGATCCAGTCCTTGCTCAAGCCACAGTGGCCTTGAGATACTCAACATTGAGGAACTTCTaGGAGAAGGTGAGGTCGGGA +
Preference number: 5 (lower is better)
Translates to: PNVPDPVLAQATVALRYSTLRNF*EKVRSG
Trigger: TCCCGACCTCACCTTCTCCAAGAAGTTCCTCAATGT...TGAGTATCTCAAGGCCACTGTGGCTTGAGCAAGGACTGGATCGGGGACATTTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS-3UTR CAA 90 bp TTGCCTGCCTTGAAGCCAGTAAGGAAGAACCCAGGACAGGACAAGGCTTGTGGGGATCGAGACGTGCTGTaGACAAAGACATTGAGGAAC +
Preference number: 5 (lower is better)
Translates to: LPALKPVRKNPGQDKACGDRDVL*TKTLRN
Trigger: GTTCCTCAATGTCTTTGTCAACAGCACGTCTCGATC...CCCACAAGCCTTGTCCTGTCCTGGGTTCTTCCTTACTGGCTTCAAGGCAGGCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS-3UTR CAA 90 bp GTGTCGCTCACAACCATCACCTCTTCTCTTTCTGTAGTTCTGCTTAAGGCCAGGGAGGTAAAGCCTCCGTaGTTGTTATTCAGAGAGTCC +
Preference number: 5 (lower is better)
Translates to: VSLTTITSSLSVVLLKAREVKPP*LLFRES
Trigger: GGACTCTCTGAATAACAACAACGGAGGCTTTACCTC...CCTGGCCTTAAGCAGAACTACAGAAAGAGAAGAGGTGATGGTTGTGAGCGACAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS-3UTR CAA 90 bp GTGGAGTCCCAGCTTACTAAACTATTCCCTATGCTTGCCTGCCTTGAAGCCAGTCTCCTGGAAATCATCTaGGAAGGAACAAATAGGGTG +
Preference number: 5 (lower is better)
Translates to: VESQLTKLFPMLACLEASLLEII*EGTNRV
Trigger: CACCCTATTTGTTCCTTCCAAGATGATTTCCAGGAG...ACTGGCTTCAAGGCAGGCAAGCATAGGGAATAGTTTAGTAAGCTGGGACTCCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS-3UTR CAA 90 bp GTGTCGCTCACAACCATCACCTCTTCTCTTTCTGTAGTTCTGCTTAAGGCCAGGCTGTTGACAAAGACATaGAGGAACTTCTTGGAGAAG +
Preference number: 5 (lower is better)
Translates to: VSLTTITSSLSVVLLKARLLTKT*RNFLEK
Trigger: CTTCTCCAAGAAGTTCCTCAATGTCTTTGTCAACAG...CCTGGCCTTAAGCAGAACTACAGAAAGAGAAGAGGTGATGGTTGTGAGCGACAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS GCA 72 bp CACTGGCCTCGCAGCTGCTGTCCTCTTCACTGTCGTTaGCCAGGCCTGCGCAGCGCCGCAGGCTCACCAGCT +
Preference number: 6 (lower is better)
Translates to: HWPRSCCPLHCR*PGLRSAAGSPA
Trigger: AGCTGGTGAGCCTGCGGCGCTGCGCAGGCCTGGGCAACGACAGTGAAGAGGACAGCAGCTGCGAGGCCAGTG
68% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS CCA 72 bp CCCAGCACGGGCTCCGCTTGCTCCCCAGCAGGTCCTTaGCAGGACCCGGTACCGCATGGGCATAGAAGGCAG +
Preference number: 6 (lower is better)
Translates to: PSTGSACSPAGP*QDPVPHGHRRQ
Trigger: CTGCCTTCTATGCCCATGCGGTACCGGGTCCTGCCAAGGACCTGCTGGGGAGCAAGCGGAGCCCGTGCTGGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS CCA 72 bp CTGCCTCAGGGTCTTGGCAGTCCTGGGGTACCGAGTTaGCCTGTGACGCAGCCTCTTCTGGCAGGCGTGGGG +
Preference number: 6 (lower is better)
Translates to: LPQGLGSPGVPS*PVTQPLLAGVG
Trigger: CCCCACGCCTGCCAGAAGAGGCTGCGTCACAGGCCAACTCGGTACCCCAGGACTGCCAAGACCCTGAGGCAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS CAA 72 bp CCTGCCTCAGGGTCTTGGCAGTCCTGGGGTACCGAGTaGGCCTGTGACGCAGCCTCTTCTGGCAGGCGTGGG +
Preference number: 6 (lower is better)
Translates to: PASGSWQSWGTE*ACDAASSGRRG
Trigger: CCCACGCCTGCCAGAAGAGGCTGCGTCACAGGCCAACTCGGTACCCCAGGACTGCCAAGACCCTGAGGCAGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS CAA 90 bp TCCGGCTCAGGCTCCGAGGCTGGGGACGAAGCCTCCTCGATGGAGTaGGTGAGATGTGATGAGCGGCCACTGCTGCTGCCACCGTCGCTG +
Preference number: 6 (lower is better)
Translates to: SGSGSEAGDEASSME*VRCDERPLLLPPSL
Trigger: CAGCGACGGTGGCAGCAGCAGTGGCCGCTCATCACATCTCACCAACTCCATCGAGGAGGCTTCGTCCCCAGCCTCGGAGCCTGAGCCGGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS CCA 72 bp GGCAGGAGAGGGGCTGGTAGCTCTTTAAGGGGCTCCTaGGCTGGCGAACGCAGCACAGTCTCCTGCCAGGAG +
Preference number: 6 (lower is better)
Translates to: GRRGAGSSLRGS*AGERSTVSCQE
Trigger: CTCCTGGCAGGAGACTGTGCTGCGTTCGCCAGCCCAGGAGCCCCTTAAAGAGCTACCAGCCCCTCTCCTGCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS CCA 72 bp GCCTCTTCTGGCAGGCGTGGGGCAGGAGATAAGCACTaGCCAGGGCAACGAATGGGCGAGGAGCCCTCAGAG +
Preference number: 6 (lower is better)
Translates to: ASSGRRGAGDKH*PGQRMGEEPSE
Trigger: CTCTGAGGGCTCCTCGCCCATTCGTTGCCCTGGCCAGTGCTTATCTCCTGCCCCACGCCTGCCAGAAGAGGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS CCA 72 bp TCCACGTGGGGCCCTGCCTCAGGGTCTTGGCAGTCCTaGGGTACCGAGTTGGCCTGTGACGCAGCCTCTTCT +
Preference number: 6 (lower is better)
Translates to: STWGPASGSWQS*GTELACDAASS
Trigger: AGAAGAGGCTGCGTCACAGGCCAACTCGGTACCCCAGGACTGCCAAGACCCTGAGGCAGGGCCCCACGTGGA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS CCA 72 bp TCCACCAACTCCACGTGGGGCCCTGCCTCAGGGTCTTaGCAGTCCTGGGGTACCGAGTTGGCCTGTGACGCA +
Preference number: 6 (lower is better)
Translates to: STNSTWGPASGS*QSWGTELACDA
Trigger: TGCGTCACAGGCCAACTCGGTACCCCAGGACTGCCAAGACCCTGAGGCAGGGCCCCACGTGGAGTTGGTGGA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS CAA 90 bp TCGCTCAGGTCAGGCTCAGACTCAGAGCCCGACTCGTATTCGCTGTaGGTGTCATCCTGGCCCACAGGCAGGAAGGCAGGGCGGCGGGGA +
Preference number: 6 (lower is better)
Translates to: SLRSGSDSEPDSYSL*VSSWPTGRKAGRRG
Trigger: TCCCCGCCGCCCTGCCTTCCTGCCTGTGGGCCAGGATGACACCAACAGCGAATACGAGTCGGGCTCTGAGTCTGAGCCTGACCTGAGCGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS CCA 72 bp GAGGCCCCACCTGATGATGCTGGTGGCTCTGGGGGCTaGTTCCCTTCACAGTCACAACCAGGGCGTGCAAGG +
Preference number: 6 (lower is better)
Translates to: EAPPDDAGGSGG*FPSQSQPGRAR
Trigger: CCTTGCACGCCCTGGTTGTGACTGTGAAGGGAACCAGCCCCCAGAGCCACCAGCATCATCAGGTGGGGCCTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS CAA 72 bp GGCGAGGAGCCCTCAGAGATCATGCGGCTCACCAGGTaGCTGAGCAGCCAGGGAGAGTCAGCATCCTCGCTC +
Preference number: 6 (lower is better)
Translates to: GEEPSEIMRLTR*LSSQGESASSL
Trigger: GAGCGAGGATGCTGACTCTCCCTGGCTGCTCAGCAACCTGGTGAGCCGCATGATCTCTGAGGGCTCCTCGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS CAA 90 bp CAACGAATGGGCGAGGAGCCCTCAGAGATCATGCGGCTCACCAGGTaGCTGAGCAGCCAGGGAGAGTCAGCATCCTCGCTCAGGTCAGGC +
Preference number: 6 (lower is better)
Translates to: QRMGEEPSEIMRLTR*LSSQGESASSLRSG
Trigger: GCCTGACCTGAGCGAGGATGCTGACTCTCCCTGGCTGCTCAGCAACCTGGTGAGCCGCATGATCTCTGAGGGCTCCTCGCCCATTCGTTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS CCA 72 bp CAGGCTCAGACTCAGAGCCCGACTCGTATTCGCTGTTaGTGTCATCCTGGCCCACAGGCAGGAAGGCAGGGC +
Preference number: 6 (lower is better)
Translates to: QAQTQSPTRIRC*CHPGPQAGRQG
Trigger: GCCCTGCCTTCCTGCCTGTGGGCCAGGATGACACCAACAGCGAATACGAGTCGGGCTCTGAGTCTGAGCCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS CCA 72 bp GTGGGGCAGGAGATAAGCACTGGCCAGGGCAACGAATaGGCGAGGAGCCCTCAGAGATCATGCGGCTCACCA +
Preference number: 6 (lower is better)
Translates to: VGQEISTGQGNE*ARSPQRSCGSP
Trigger: TGGTGAGCCGCATGATCTCTGAGGGCTCCTCGCCCATTCGTTGCCCTGGCCAGTGCTTATCTCCTGCCCCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS CCA 72 bp CGGTGTGGCCCAAAGCGGGGTGATGGTATCCCGTGTTaGGTTACTAAGGAAAAGGCAGGGCCCAGGCTGCGC +
Preference number: 6 (lower is better)
Translates to: RCGPKRGDGIPC*VTKEKAGPRLR
Trigger: GCGCAGCCTGGGCCCTGCCTTTTCCTTAGTAACCCAACACGGGATACCATCACCCCGCTTTGGGCCACACCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS TCA 72 bp AGGAGCCCTCAGAGATCATGCGGCTCACCAGGTTGCTaGGCAGCCAGGGAGAGTCAGCATCCTCGCTCAGGT +
Preference number: 6 (lower is better)
Translates to: RSPQRSCGSPGC*AARESQHPRSG
Trigger: ACCTGAGCGAGGATGCTGACTCTCCCTGGCTGCTCAGCAACCTGGTGAGCCGCATGATCTCTGAGGGCTCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS CCA 72 bp CAGTCACAACCAGGGCGTGCAAGGGACTGTACTTCATaGCGCTCCTCTTCTGCTGGCAGGAGAGGGGCTGGT +
Preference number: 6 (lower is better)
Translates to: QSQPGRARDCTS*RSSSAGRRGAG
Trigger: ACCAGCCCCTCTCCTGCCAGCAGAAGAGGAGCGCCATGAAGTACAGTCCCTTGCACGCCCTGGTTGTGACTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS CAA 72 bp TCAGGCTCAGACTCAGAGCCCGACTCGTATTCGCTGTaGGTGTCATCCTGGCCCACAGGCAGGAAGGCAGGG +
Preference number: 6 (lower is better)
Translates to: SGSDSEPDSYSL*VSSWPTGRKAG
Trigger: CCCTGCCTTCCTGCCTGTGGGCCAGGATGACACCAACAGCGAATACGAGTCGGGCTCTGAGTCTGAGCCTGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS TCA 72 bp AGGAGAGGGAATAAGGGAGTCTCCAGCAAGTGCCTGTaGACCAGGCCCTCCCCCTGCTTTGCCCTGCCTATC +
Preference number: 6 (lower is better)
Translates to: RRGNKGVSSKCL*TRPSPCFALPI
Trigger: GATAGGCAGGGCAAAGCAGGGGGAGGGCCTGGTTCACAGGCACTTGCTGGAGACTCCCTTATTCCCTCTCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS GCA 72 bp TCCGGATGTCGAGGGATGAACCTGAAGACAGCCCGGTaGGTTTGCTCTCTCTCCTCCCCATTCACCACACAG +
Preference number: 6 (lower is better)
Translates to: SGCRGMNLKTAR*VCSLSSPFTTQ
Trigger: CTGTGTGGTGAATGGGGAGGAGAGAGAGCAAACGCACCGGGCTGTCTTCAGGTTCATCCCTCGACATCCGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS TCA 72 bp TTTTGCATGGCTGCACACAGGATCCCATTGCCCTGGTaGCACGGTACCTCCACGGAGCCCAAGAACTGCACA +
Preference number: 6 (lower is better)
Translates to: FCMAAHRIPLPW*HGTSTEPKNCT
Trigger: TGTGCAGTTCTTGGGCTCCGTGGAGGTACCGTGTCACCAGGGCAATGGGATCCTGTGTGCAGCCATGCAAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS TCA 72 bp AGGCAGGGAACACTCCACGCTCGCCGGTGCGCATGTTaGAGCCACGAAACCAAAAGTCATCCTCTTCTGCTT +
Preference number: 6 (lower is better)
Translates to: RQGTLHARRCAC*SHETKSHPLLL
Trigger: AAGCAGAAGAGGATGACTTTTGGTTTCGTGGCTTCAACATGCGCACCGGCGAGCGTGGAGTGTTCCCTGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS CAA 72 bp AAGGCAGGGAACACTCCACGCTCGCCGGTGCGCATGTaGAAGCCACGAAACCAAAAGTCATCCTCTTCTGCT +
Preference number: 6 (lower is better)
Translates to: KAGNTPRSPVRM*KPRNQKSSSSA
Trigger: AGCAGAAGAGGATGACTTTTGGTTTCGTGGCTTCAACATGCGCACCGGCGAGCGTGGAGTGTTCCCTGCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS CAA 90 bp TCCTGTGCTCCAAGTGTAGTCAGATGGAGAGTGGTGGGTCGGAGCTaGTGGGACTCTTCTAGGGAAGGAGAGGGAATAAGGGAGTCTCCA +
Preference number: 6 (lower is better)
Translates to: SCAPSVVRWRVVGRS*WDSSREGEGIRESP
Trigger: TGGAGACTCCCTTATTCCCTCTCCTTCCCTAGAAGAGTCCCACAAGCTCCGACCCACCACTCTCCATCTGACTACACTTGGAGCACAGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS GCA 72 bp TGTCGAGGGATGAACCTGAAGACAGCCCGGTGCGTTTaGTCTCTCTCCTCCCCATTCACCACACAGGAAAAA +
Preference number: 6 (lower is better)
Translates to: CRGMNLKTARCV*SLSSPFTTQEK
Trigger: TTTTTCCTGTGTGGTGAATGGGGAGGAGAGAGAGCAAACGCACCGGGCTGTCTTCAGGTTCATCCCTCGACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS CCA 72 bp AGTGTAGTCAGATGGAGAGTGGTGGGTCGGAGCTTGTaGGACTCTTCTAGGGAAGGAGAGGGAATAAGGGAG +
Preference number: 6 (lower is better)
Translates to: SVVRWRVVGRSL*DSSREGEGIRE
Trigger: CTCCCTTATTCCCTCTCCTTCCCTAGAAGAGTCCCACAAGCTCCGACCCACCACTCTCCATCTGACTACACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS CAA 72 bp CCAAGTGTAGTCAGATGGAGAGTGGTGGGTCGGAGCTaGTGGGACTCTTCTAGGGAAGGAGAGGGAATAAGG +
Preference number: 6 (lower is better)
Translates to: PSVVRWRVVGRS*WDSSREGEGIR
Trigger: CCTTATTCCCTCTCCTTCCCTAGAAGAGTCCCACAAGCTCCGACCCACCACTCTCCATCTGACTACACTTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS CAA 90 bp CTCCTCCTCGTTGTCGTCGATCATCTCAAACTCCTGGAAATCATCTaGGAAGGAACAAATAGGGTGTGGCTGCTCCGAGCGGCCCAGAGA +
Preference number: 6 (lower is better)
Translates to: LLLVVVDHLKLLEII*EGTNRVWLLRAAQR
Trigger: TCTCTGGGCCGCTCGGAGCAGCCACACCCTATTTGTTCCTTCCAAGATGATTTCCAGGAGTTTGAGATGATCGACGACAACGAGGAGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS CAA 90 bp CTGGAGGATCGAGACGTGCTGTTGACAAAGACATTGAGGAACTTCTaGGAGAAGGTGAGGTCGGGACTGTCAGGAGAAGCATCCTCTGGC +
Preference number: 6 (lower is better)
Translates to: LEDRDVLLTKTLRNF*EKVRSGLSGEASSG
Trigger: GCCAGAGGATGCTTCTCCTGACAGTCCCGACCTCACCTTCTCCAAGAAGTTCCTCAATGTCTTTGTCAACAGCACGTCTCGATCCTCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS GCA 72 bp TGGAAATCATCTTGGAAGGAACAAATAGGGTGTGGCTaGTCCGAGCGGCCCAGAGAGAGACTGTCCTTCTCA +
Preference number: 6 (lower is better)
Translates to: WKSSWKEQIGCG*SERPRERLSFS
Trigger: TGAGAAGGACAGTCTCTCTCTGGGCCGCTCGGAGCAGCCACACCCTATTTGTTCCTTCCAAGATGATTTCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS CAA 72 bp CAGGAGGATGGGGGTGCAGAGGTAAAGCCTCCGTTGTaGTTATTCAGAGAGTCCTGTGCTCCAAGTGTAGTC +
Preference number: 6 (lower is better)
Translates to: QEDGGAEVKPPL*LFRESCAPSVV
Trigger: GACTACACTTGGAGCACAGGACTCTCTGAATAACAACAACGGAGGCTTTACCTCTGCACCCCCATCCTCCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS CAA 72 bp TGCCAGGAGGATGGGGGTGCAGAGGTAAAGCCTCCGTaGTTGTTATTCAGAGAGTCCTGTGCTCCAAGTGTA +
Preference number: 6 (lower is better)
Translates to: CQEDGGAEVKPP*LLFRESCAPSV
Trigger: TACACTTGGAGCACAGGACTCTCTGAATAACAACAACGGAGGCTTTACCTCTGCACCCCCATCCTCCTGGCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS CAA 90 bp TCCTCTTCCTCCTCTTCCTCCTCCTCCTCATCGTCCTCCTCCTCGTaGTCGTCGATCATCTCAAACTCCTGGAAATCATCTTGGAAGGAA +
Preference number: 6 (lower is better)
Translates to: SSSSSSSSSSSSSSS*SSIISNSWKSSWKE
Trigger: TTCCTTCCAAGATGATTTCCAGGAGTTTGAGATGATCGACGACAACGAGGAGGAGGACGATGAGGAGGAGGAGGAAGAGGAGGAAGAGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS CAA 72 bp TCCTCTTCCTCCTCCTCCTCATCGTCCTCCTCCTCGTaGTCGTCGATCATCTCAAACTCCTGGAAATCATCT +
Preference number: 6 (lower is better)
Translates to: SSSSSSSSSSSS*SSIISNSWKSS
Trigger: AGATGATTTCCAGGAGTTTGAGATGATCGACGACAACGAGGAGGAGGACGATGAGGAGGAGGAGGAAGAGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS CAA 72 bp CGAGACGTGCTGTTGACAAAGACATTGAGGAACTTCTaGGAGAAGGTGAGGTCGGGACTGTCAGGAGAAGCA +
Preference number: 6 (lower is better)
Translates to: RDVLLTKTLRNF*EKVRSGLSGEA
Trigger: TGCTTCTCCTGACAGTCCCGACCTCACCTTCTCCAAGAAGTTCCTCAATGTCTTTGTCAACAGCACGTCTCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS TCA 72 bp AAAATAGCAGCTGTTTCGGGGATGACAGCCACAGAATaGGATGTTCTTCATCTGGAAGAAGTGGCTGCAGCG +
Preference number: 6 (lower is better)
Translates to: KIAAVSGMTATE*DVLHLEEVAAA
Trigger: CGCTGCAGCCACTTCTTCCAGATGAAGAACATCTCATTCTGTGGCTGTCATCCCCGAAACAGCTGCTATTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6
CDS CCA 72 bp TCCTCCTCCTCGTTGTCGTCGATCATCTCAAACTCCTaGAAATCATCTTGGAAGGAACAAATAGGGTGTGGC +
Preference number: 6 (lower is better)
Translates to: SSSSLSSIISNS*KSSWKEQIGCG
Trigger: GCCACACCCTATTTGTTCCTTCCAAGATGATTTCCAGGAGTTTGAGATGATCGACGACAACGAGGAGGAGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023291.6