RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MAPK7 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000001034

Ensembl transcript IDs: ENSMUST00000079080.13, ENSMUST00000101085.9, ENSMUST00000108714.2, ENSMUST00000153441.2

Found 325 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR GCA 90 bp ACAATACTGGAGAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGAAGCCAAGCCTCACCTaGCAGGCCCAGGGTGCAGCC +
Preference number: 2 (lower is better)
Translates to: TILEKTAQGGVESPGPVMKPSLT*QAQGAA
Trigger: GGCTGCACCCTGGGCCTGGCAGGTGAGGCTTGGCTT...CATAACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTCTCCAGTATTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
3UTR-3UTR CCA 90 bp GAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTATGCTGGGTCTATCCTaGCAGCAAGGCACAAGCTGT +
Preference number: 2 (lower is better)
Translates to: ESPGPVMARWWLRWLLKAMLGLS*QQGTSC
Trigger: ACAGCTTGTGCCTTGCTGCCAGGATAGACCCAGCAT...AGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAGACTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
3UTR-3UTR CCA 90 bp GGTGGGTCTGAGATGAACCTGCAGAGTAACTCAAGCCAAGCCTCACCTGCCAGGATGCTGGGTCTATCCTaGCAGCAAGGCACAAGCTGT +
Preference number: 2 (lower is better)
Translates to: GGSEMNLQSNSSQASPARMLGLS*QQGTSC
Trigger: ACAGCTTGTGCCTTGCTGCCAGGATAGACCCAGCAT...CCTGGCAGGTGAGGCTTGGCTTGAGTTACTCTGCAGGTTCATCTCAGACCCACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
3UTR-3UTR TCA 90 bp TCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGAAGGTGGGTCTGAGATaGACCTGCAGAGTAACTCAA +
Preference number: 2 (lower is better)
Translates to: SGRSRVSWSCYGSVVAQVKVGLR*TCRVTQ
Trigger: TTGAGTTACTCTGCAGGTTCATCTCAGACCCACCTT...CACCTGAGCCACCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCCCTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
3UTR-3UTR CCA 90 bp AATACAATACTGGAGAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGCTGGGTCTATCCTaGCAGCAAGGCACAAGCTGT +
Preference number: 2 (lower is better)
Translates to: NTILEKTAQGGVESPGPVMLGLS*QQGTSC
Trigger: ACAGCTTGTGCCTTGCTGCCAGGATAGACCCAGCAT...AACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTCTCCAGTATTGTATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
3UTR CCA 72 bp GCCAGGCCCAGGGTGCAGCCCTTTGGATCGCACCCCTaGACCTTGATGCTGGGTCTATCCTGGCAGCAAGGC +
Preference number: 3 (lower is better)
Translates to: ARPRVQPFGSHP*TLMLGLSWQQG
Trigger: GCCTTGCTGCCAGGATAGACCCAGCATCAAGGTCCAGGGGTGCGATCCAAAGGGCTGCACCCTGGGCCTGGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
3UTR TCA 72 bp CCAGGGTGCAGCCCTTTGGATCGCACCCCTGGACCTTaGTGCTGGGTCTATCCTGGCAGCAAGGCACAAGCT +
Preference number: 3 (lower is better)
Translates to: PGCSPLDRTPGP*CWVYPGSKAQA
Trigger: AGCTTGTGCCTTGCTGCCAGGATAGACCCAGCATCAAGGTCCAGGGGTGCGATCCAAAGGGCTGCACCCTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
3UTR CCA 72 bp GGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTGGTaGCTCAGGTGGCTGCTTAAGGCTGAAAGGTGGGTC +
Preference number: 3 (lower is better)
Translates to: GVESPGPVMARW*LRWLLKAERWV
Trigger: GACCCACCTTTCAGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAGACTCTACTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
3UTR CCA 72 bp GGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTaGTGGCTCAGGTGGCTGCTTAAGGCTGAAAGGTGG +
Preference number: 3 (lower is better)
Translates to: GGVESPGPVMAR*WLRWLLKAERW
Trigger: CCACCTTTCAGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
3UTR CCA 72 bp ACTGGAGAAGACTGCTCAGGGAGGAGTAGAGTCTCCTaGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCT +
Preference number: 3 (lower is better)
Translates to: TGEDCSGRSRVS*SCYGSVVAQVA
Trigger: AGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTCTCCAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp GCCAGGCCCAGGGTGCAGCCCTTTGGATCGCACCCCTGGACCTTGATGCTGGGTGTGGAGCAAGCTCACTaGCCGGCGGGGCAGGCTGCA +
Preference number: 4 (lower is better)
Translates to: ARPRVQPFGSHPWTLMLGVEQAH*PAGQAA
Trigger: TGCAGCCTGCCCCGCCGGCCAGTGAGCTTGCTCCAC...ACCCAGCATCAAGGTCCAGGGGTGCGATCCAAAGGGCTGCACCCTGGGCCTGGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079080.13
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp ACCTGCAGAGTAACTCAAGCCAAGCCTCACCTGCCAGGCCCAGGGTGCAGCCCTGGACGGTGCTGGCGCTaGTGCTGGCGCTGGGGCAGG +
Preference number: 4 (lower is better)
Translates to: TCRVTQAKPHLPGPGCSPGRCWR*CWRWGR
Trigger: CCTGCCCCAGCGCCAGCACCAGCGCCAGCACCGTCC...AGGGCTGCACCCTGGGCCTGGCAGGTGAGGCTTGGCTTGAGTTACTCTGCAGGT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR GCA 90 bp GCCAGGCCCAGGGTGCAGCCCTTTGGATCGCACCCCTGGACCTTGATGCTGGGTGCCGGCGGGGCAGGCTaGAGAGTCAGATCAACGGTG +
Preference number: 4 (lower is better)
Translates to: ARPRVQPFGSHPWTLMLGAGGAG*RVRSTV
Trigger: CACCGTTGATCTGACTCTGCAGCCTGCCCCGCCGGC...ACCCAGCATCAAGGTCCAGGGGTGCGATCCAAAGGGCTGCACCCTGGGCCTGGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp GGTGCAGCCCTTTGGATCGCACCCCTGGACCTTGATGCTGGGTCTATCCTGGCAGGACGGTGCTGGCGCTaGTGCTGGCGCTGGGGCAGG +
Preference number: 4 (lower is better)
Translates to: GAALWIAPLDLDAGSILAGRCWR*CWRWGR
Trigger: CCTGCCCCAGCGCCAGCACCAGCGCCAGCACCGTCC...TGCCAGGATAGACCCAGCATCAAGGTCCAGGGGTGCGATCCAAAGGGCTGCACC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR GCA 90 bp GCCCAGGGTGCAGCCCTTTGGATCGCACCCCTGGACCTTGATGCTGGGTCTATCGCCGGCGGGGCAGGCTaGAGAGTCAGATCAACGGTG +
Preference number: 4 (lower is better)
Translates to: AQGAALWIAPLDLDAGSIAGGAG*RVRSTV
Trigger: CACCGTTGATCTGACTCTGCAGCCTGCCCCGCCGGC...GATAGACCCAGCATCAAGGTCCAGGGGTGCGATCCAAAGGGCTGCACCCTGGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR GCA 90 bp GCCAGGCCCAGGGTGCAGCCCTTTGGATCGCACCCCTGGACCTTGATGCTGGGTCGTAGCCAGCCCCACTaGCCTTTGGAGTGCCAGAGA +
Preference number: 4 (lower is better)
Translates to: ARPRVQPFGSHPWTLMLGRSQPH*PLECQR
Trigger: TCTCTGGCACTCCAAAGGGCAGTGGGGCTGGCTACG...ACCCAGCATCAAGGTCCAGGGGTGCGATCCAAAGGGCTGCACCCTGGGCCTGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp GCCAGGCCCAGGGTGCAGCCCTTTGGATCGCACCCCTGGACCTTGATGCTGGGTGGTGGGCAAACAGGCTaGGAGGCAGGACCCGGAATA +
Preference number: 4 (lower is better)
Translates to: ARPRVQPFGSHPWTLMLGGGQTG*EAGPGI
Trigger: TATTCCGGGTCCTGCCTCCCAGCCTGTTTGCCCACC...ACCCAGCATCAAGGTCCAGGGGTGCGATCCAAAGGGCTGCACCCTGGGCCTGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp GCCAGGCCCAGGGTGCAGCCCTTTGGATCGCACCCCTGGACCTTGATGCTGGGTTGCCTGGCCATCCTGTaGCCCATCAGCCACACCCAT +
Preference number: 4 (lower is better)
Translates to: ARPRVQPFGSHPWTLMLGCLAIL*PISHTH
Trigger: ATGGGTGTGGCTGATGGGCCACAGGATGGCCAGGCA...ACCCAGCATCAAGGTCCAGGGGTGCGATCCAAAGGGCTGCACCCTGGGCCTGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp GCCAGGCCCAGGGTGCAGCCCTTTGGATCGCACCCCTGGACCTTGATGCTGGGTGAGGCTGAGTCTGCCTaGCCATCCTGTGGCCCATCA +
Preference number: 4 (lower is better)
Translates to: ARPRVQPFGSHPWTLMLGEAESA*PSCGPS
Trigger: TGATGGGCCACAGGATGGCCAGGCAGACTCAGCCTC...ACCCAGCATCAAGGTCCAGGGGTGCGATCCAAAGGGCTGCACCCTGGGCCTGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp ACCTGCAGAGTAACTCAAGCCAAGCCTCACCTGCCAGGCCCAGGGTGCAGCCCTAGCAGGGAGAGGGCCTaGCGGTCAGCACCTGGGTAT +
Preference number: 4 (lower is better)
Translates to: TCRVTQAKPHLPGPGCSPSRERA*RSAPGY
Trigger: ATACCCAGGTGCTGACCGCCAGGCCCTCTCCCTGCT...AGGGCTGCACCCTGGGCCTGGCAGGTGAGGCTTGGCTTGAGTTACTCTGCAGGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp GCCAGGCCCAGGGTGCAGCCCTTTGGATCGCACCCCTGGACCTTGATGCTGGGTTGGAAGCGGATTTGTTaGCGGATGCCCTCCCGTCGT +
Preference number: 4 (lower is better)
Translates to: ARPRVQPFGSHPWTLMLGWKRIC*RMPSRR
Trigger: ACGACGGGAGGGCATCCGCCAACAAATCCGCTTCCA...ACCCAGCATCAAGGTCCAGGGGTGCGATCCAAAGGGCTGCACCCTGGGCCTGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp GCCAGGCCCAGGGTGCAGCCCTTTGGATCGCACCCCTGGACCTTGATGCTGGGTGGCTGCAGAGAAGGCTaGAAGCGGATTTGTTGGCGG +
Preference number: 4 (lower is better)
Translates to: ARPRVQPFGSHPWTLMLGGCREG*KRICWR
Trigger: CCGCCAACAAATCCGCTTCCAGCCTTCTCTGCAGCC...ACCCAGCATCAAGGTCCAGGGGTGCGATCCAAAGGGCTGCACCCTGGGCCTGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp GGTGCAGCCCTTTGGATCGCACCCCTGGACCTTGATGCTGGGTCTATCCTGGCAATAGGGCCAGCAGGCTaGGGAACAGGGCCAGGGGGT +
Preference number: 4 (lower is better)
Translates to: GAALWIAPLDLDAGSILAIGPAG*GTGPGG
Trigger: ACCCCCTGGCCCTGTTCCCCAGCCTGCTGGCCCTAT...TGCCAGGATAGACCCAGCATCAAGGTCCAGGGGTGCGATCCAAAGGGCTGCACC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp ACCTGCAGAGTAACTCAAGCCAAGCCTCACCTGCCAGGCCCAGGGTGCAGCCCTGTGGAAGGGGCAGTCTaGAGCGGAGCAGGGATAGGG +
Preference number: 4 (lower is better)
Translates to: TCRVTQAKPHLPGPGCSPVEGAV*SGAGIG
Trigger: CCCTATCCCTGCTCCGCTCCAGACTGCCCCTTCCAC...AGGGCTGCACCCTGGGCCTGGCAGGTGAGGCTTGGCTTGAGTTACTCTGCAGGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp GAGAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTGGGTGCACTGGGCCCATTaGCCGGCGGGGCAGGCTGCA +
Preference number: 4 (lower is better)
Translates to: EKTAQGGVESPGPVMARWVHWAH*PAGQAA
Trigger: TGCAGCCTGCCCCGCCGGCCAATGGGCCCAGTGCAC...CCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101085.9
CDS-3UTR CCA 90 bp GAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTGCAGGGCCAGGTTCTTaGCCACCACAGAGGCAGCGG +
Preference number: 4 (lower is better)
Translates to: ESPGPVMARWWLRWLLKAAGPGS*PPQRQR
Trigger: CCGCTGCCTCTGTGGTGGCCAAGAACCTGGCCCTGC...AGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAGACTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079080.13
CDS-3UTR CCA 90 bp ACCTGCAGAGTAACTCAAGCCAAGCCTCACCTGCCAGGCCCAGGGTGCAGCCCTGCTTCTCCCGCTCCTTaGCTCTCTCTTGTCGCCTCC +
Preference number: 4 (lower is better)
Translates to: TCRVTQAKPHLPGPGCSPASPAP*LSLVAS
Trigger: GGAGGCGACAAGAGAGAGCCAAGGAGCGGGAGAAGC...AGGGCTGCACCCTGGGCCTGGCAGGTGAGGCTTGGCTTGAGTTACTCTGCAGGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp ACCTGCAGAGTAACTCAAGCCAAGCCTCACCTGCCAGGCCCAGGGTGCAGCCCTGGTGGGCAAACAGGCTaGGAGGCAGGACCCGGAATA +
Preference number: 4 (lower is better)
Translates to: TCRVTQAKPHLPGPGCSPGGQTG*EAGPGI
Trigger: TATTCCGGGTCCTGCCTCCCAGCCTGTTTGCCCACC...AGGGCTGCACCCTGGGCCTGGCAGGTGAGGCTTGGCTTGAGTTACTCTGCAGGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
3UTR CAA 72 bp CCCAGGGTGCAGCCCTTTGGATCGCACCCCTGGACCTaGATGCTGGGTCTATCCTGGCAGCAAGGCACAAGC +
Preference number: 4 (lower is better)
Translates to: PRVQPFGSHPWT*MLGLSWQQGTS
Trigger: GCTTGTGCCTTGCTGCCAGGATAGACCCAGCATCAAGGTCCAGGGGTGCGATCCAAAGGGCTGCACCCTGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR TCA 90 bp TCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGCGAAGGAGCGGGCTTTaGGCAGGGCCAGGTTCTTGG +
Preference number: 4 (lower is better)
Translates to: SGRSRVSWSCYGSVVAQVRRSGL*AGPGSW
Trigger: CCAAGAACCTGGCCCTGCTCAAAGCCCGCTCCTTCG...CACCTGAGCCACCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCCCTGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079080.13
CDS-3UTR GCA 90 bp TCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTGAAGCCGGCGGGGCAGGCTaGAGAGTCAGATCAACGGTG +
Preference number: 4 (lower is better)
Translates to: SPGPVMARWWLRWLLKAEAGGAG*RVRSTV
Trigger: CACCGTTGATCTGACTCTGCAGCCTGCCCCGCCGGC...TTCAGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR GCA 90 bp TCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGAGGCGCCTCCAAGGGTaGACTGGGCCCATCTCTGAG +
Preference number: 4 (lower is better)
Translates to: SGRSRVSWSCYGSVVAQVRRLQG*TGPISE
Trigger: CTCAGAGATGGGCCCAGTGCACCCTTGGAGGCGCCT...CACCTGAGCCACCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCCCTGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079080.13
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp ACCTGCAGAGTAACTCAAGCCAAGCCTCACCTGCCAGGCCCAGGGTGCAGCCCTCACGTAGTTTTTGCCTaGGAAGAGCTGGCGCCGAGC +
Preference number: 4 (lower is better)
Translates to: TCRVTQAKPHLPGPGCSPHVVFA*EELAPS
Trigger: GCTCGGCGCCAGCTCTTCCCAGGCAAAAACTACGTG...AGGGCTGCACCCTGGGCCTGGCAGGTGAGGCTTGGCTTGAGTTACTCTGCAGGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp ACCTGCAGAGTAACTCAAGCCAAGCCTCACCTGCCAGGCCCAGGGTGCAGCCCTGGCTGCAGAGAAGGCTaGAAGCGGATTTGTTGGCGG +
Preference number: 4 (lower is better)
Translates to: TCRVTQAKPHLPGPGCSPGCREG*KRICWR
Trigger: CCGCCAACAAATCCGCTTCCAGCCTTCTCTGCAGCC...AGGGCTGCACCCTGGGCCTGGCAGGTGAGGCTTGGCTTGAGTTACTCTGCAGGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp GAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGATAGGGCCAGCAGGCTaGGGAACAGGGCCAGGGGGT +
Preference number: 4 (lower is better)
Translates to: EDCSGRSRVSWSCYGSVVIGPAG*GTGPGG
Trigger: ACCCCCTGGCCCTGTTCCCCAGCCTGCTGGCCCTAT...CACCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp GAGATGAACCTGCAGAGTAACTCAAGCCAAGCCTCACCTGCCAGGCCCAGGGTGGTGGAAGGGGCAGTCTaGAGCGGAGCAGGGATAGGG +
Preference number: 4 (lower is better)
Translates to: EMNLQSNSSQASPARPRVVEGAV*SGAGIG
Trigger: CCCTATCCCTGCTCCGCTCCAGACTGCCCCTTCCAC...CACCCTGGGCCTGGCAGGTGAGGCTTGGCTTGAGTTACTCTGCAGGTTCATCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp GAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTGGTGAGCCCAGGATCTaGAGGTGGTGGGCCAGATGG +
Preference number: 4 (lower is better)
Translates to: ESPGPVMARWWLRWLLKAGEPRI*RWWARW
Trigger: CCATCTGGCCCACCACCTCCAGATCCTGGGCTCACC...AGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAGACTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp GCCAGGCCCAGGGTGCAGCCCTTTGGATCGCACCCCTGGACCTTGATGCTGGGTATTGGGGAGTCCATCTaGATCTCACGCTGCAGAGAC +
Preference number: 4 (lower is better)
Translates to: ARPRVQPFGSHPWTLMLGIGESI*ISRCRD
Trigger: GTCTCTGCAGCGTGAGATCCAGATGGACTCCCCAAT...ACCCAGCATCAAGGTCCAGGGGTGCGATCCAAAGGGCTGCACCCTGGGCCTGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR TCA 90 bp GAGATGAACCTGCAGAGTAACTCAAGCCAAGCCTCACCTGCCAGGCCCAGGGTGACAGAGGCAGCGGTGTaGACGGGTTCTGCCTTCACC +
Preference number: 4 (lower is better)
Translates to: EMNLQSNSSQASPARPRVTEAAV*TGSAFT
Trigger: GGTGAAGGCAGAACCCGTTCACACCGCTGCCTCTGT...CACCCTGGGCCTGGCAGGTGAGGCTTGGCTTGAGTTACTCTGCAGGTTCATCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079080.13
CDS-3UTR TCA 90 bp GCCCAGGGTGCAGCCCTTTGGATCGCACCCCTGGACCTTGATGCTGGGTCTATCTTCGGTCATTGTCACTaGGCACCAGTCCAGCCAGAG +
Preference number: 4 (lower is better)
Translates to: AQGAALWIAPLDLDAGSIFGHCH*APVQPE
Trigger: CTCTGGCTGGACTGGTGCTCAGTGACAATGACCGAA...GATAGACCCAGCATCAAGGTCCAGGGGTGCGATCCAAAGGGCTGCACCCTGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR TCA 90 bp ACCTGCAGAGTAACTCAAGCCAAGCCTCACCTGCCAGGCCCAGGGTGCAGCCCTTTCGGTCATTGTCACTaGGCACCAGTCCAGCCAGAG +
Preference number: 4 (lower is better)
Translates to: TCRVTQAKPHLPGPGCSPFGHCH*APVQPE
Trigger: CTCTGGCTGGACTGGTGCTCAGTGACAATGACCGAA...AGGGCTGCACCCTGGGCCTGGCAGGTGAGGCTTGGCTTGAGTTACTCTGCAGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR TCA 90 bp GCCCAGGGTGCAGCCCTTTGGATCGCACCCCTGGACCTTGATGCTGGGTCTATCACTAGGTGGCACAAGTaGCTGGGAGGCCAAAAGGCT +
Preference number: 4 (lower is better)
Translates to: AQGAALWIAPLDLDAGSITRWHK*LGGQKA
Trigger: AGCCTTTTGGCCTCCCAGTCACTTGTGCCACCTAGT...GATAGACCCAGCATCAAGGTCCAGGGGTGCGATCCAAAGGGCTGCACCCTGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR GCA 90 bp GCCCAGGGTGCAGCCCTTTGGATCGCACCCCTGGACCTTGATGCTGGGTCTATCGCCTGCGTATACTCGTaGAGGGAAAGCATGAGCTCC +
Preference number: 4 (lower is better)
Translates to: AQGAALWIAPLDLDAGSIACVYS*RESMSS
Trigger: GGAGCTCATGCTTTCCCTGCACGAGTATACGCAGGC...GATAGACCCAGCATCAAGGTCCAGGGGTGCGATCCAAAGGGCTGCACCCTGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR GCA 90 bp TCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGTCCCAAGGCACAGGTTaGCTTGGTGGCAGGCTCTGG +
Preference number: 4 (lower is better)
Translates to: SGRSRVSWSCYGSVVAQVSQGTG*LGGRLW
Trigger: CCAGAGCCTGCCACCAAGGCAACCTGTGCCTTGGGA...CACCTGAGCCACCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCCCTGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR GCA 90 bp ACCTGCAGAGTAACTCAAGCCAAGCCTCACCTGCCAGGCCCAGGGTGCAGCCCTGATGCCCTCCCGTCGTaGATGGAAGTCCTCAATCTC +
Preference number: 4 (lower is better)
Translates to: TCRVTQAKPHLPGPGCSPDALPS*MEVLNL
Trigger: GAGATTGAGGACTTCCATGCACGACGGGAGGGCATC...AGGGCTGCACCCTGGGCCTGGCAGGTGAGGCTTGGCTTGAGTTACTCTGCAGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR GCA 90 bp GGTGCAGCCCTTTGGATCGCACCCCTGGACCTTGATGCTGGGTCTATCCTGGCAAGAGCATGGTGGCAGTaGTGGAGGAGGCGACTCCAT +
Preference number: 4 (lower is better)
Translates to: GAALWIAPLDLDAGSILARAWWQ*WRRRLH
Trigger: ATGGAGTCGCCTCCTCCAGCACTGCCACCATGCTCT...TGCCAGGATAGACCCAGCATCAAGGTCCAGGGGTGCGATCCAAAGGGCTGCACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR GCA 90 bp GCCAGGCCCAGGGTGCAGCCCTTTGGATCGCACCCCTGGACCTTGATGCTGGGTGGCAGCTTTGAGGGCTaGTTTGGTATTGTCGGAGAT +
Preference number: 4 (lower is better)
Translates to: ARPRVQPFGSHPWTLMLGGSFEG*FGIVGD
Trigger: ATCTCCGACAATACCAAAGCAGCCCTCAAAGCTGCC...ACCCAGCATCAAGGTCCAGGGGTGCGATCCAAAGGGCTGCACCCTGGGCCTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079080.13
ENSMUST00000108714.2
CDS-3UTR GCA 90 bp TCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTGAAAGGCGCCTCCAAGGGTaGACTGGGCCCATCTCTGAG +
Preference number: 4 (lower is better)
Translates to: SPGPVMARWWLRWLLKAERRLQG*TGPISE
Trigger: CTCAGAGATGGGCCCAGTGCACCCTTGGAGGCGCCT...TTCAGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079080.13
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp GAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGAGCAGGGAGAGGGCCTaGCGGTCAGCACCTGGGTAT +
Preference number: 4 (lower is better)
Translates to: EDCSGRSRVSWSCYGSVVSRERA*RSAPGY
Trigger: ATACCCAGGTGCTGACCGCCAGGCCCTCTCCCTGCT...CACCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp GCCCAGGGTGCAGCCCTTTGGATCGCACCCCTGGACCTTGATGCTGGGTCTATCTTGGAGCCCAGGGACTaGGCATCTCAACATCTGGAC +
Preference number: 4 (lower is better)
Translates to: AQGAALWIAPLDLDAGSILEPRD*ASQHLD
Trigger: GTCCAGATGTTGAGATGCCCAGTCCCTGGGCTCCAA...GATAGACCCAGCATCAAGGTCCAGGGGTGCGATCCAAAGGGCTGCACCCTGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp GTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTGAAAGGTGGGGGTGGGCAAACAGGCTaGGAGGCAGGACCCGGAATA +
Preference number: 4 (lower is better)
Translates to: VLLWLGGGSGGCLRLKGGGGQTG*EAGPGI
Trigger: TATTCCGGGTCCTGCCTCCCAGCCTGTTTGCCCACC...CCCACCTTTCAGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp ACCTGCAGAGTAACTCAAGCCAAGCCTCACCTGCCAGGCCCAGGGTGCAGCCCTAGGATCTGGAGGTGGTaGGCCAGATGGGAAGTAAGG +
Preference number: 4 (lower is better)
Translates to: TCRVTQAKPHLPGPGCSPRIWRW*ARWEVR
Trigger: CCTTACTTCCCATCTGGCCCACCACCTCCAGATCCT...AGGGCTGCACCCTGGGCCTGGCAGGTGAGGCTTGGCTTGAGTTACTCTGCAGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp GAGAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTGGGGTGAGCCCAGGATCTaGAGGTGGTGGGCCAGATGG +
Preference number: 4 (lower is better)
Translates to: EKTAQGGVESPGPVMARWGEPRI*RWWARW
Trigger: CCATCTGGCCCACCACCTCCAGATCCTGGGCTCACC...CCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp GAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTTGCCTGGCCATCCTGTaGCCCATCAGCCACACCCAT +
Preference number: 4 (lower is better)
Translates to: ESPGPVMARWWLRWLLKACLAIL*PISHTH
Trigger: ATGGGTGTGGCTGATGGGCCACAGGATGGCCAGGCA...AGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAGACTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp GAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGGGCCACCTGCTGGCCTaGGGAGCAGGAAAAGGGCAT +
Preference number: 4 (lower is better)
Translates to: EDCSGRSRVSWSCYGSVVGHLLA*GAGKGH
Trigger: ATGCCCTTTTCCTGCTCCCCAGGCCAGCAGGTGGCC...CACCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101085.9
CDS-3UTR TCA 90 bp GAGATGAACCTGCAGAGTAACTCAAGCCAAGCCTCACCTGCCAGGCCCAGGGTGGGATCTTCAGCTCCCTaGGGGTCCGTTTGGCATTGG +
Preference number: 4 (lower is better)
Translates to: EMNLQSNSSQASPARPRVGSSAP*GSVWHW
Trigger: CCAATGCCAAACGGACCCTCAGGGAGCTGAAGATCC...CACCCTGGGCCTGGCAGGTGAGGCTTGGCTTGAGTTACTCTGCAGGTTCATCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR TCA 90 bp GAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGTCAGCCCCCACAGCCTaGATCACAGCTGGTGACGGA +
Preference number: 4 (lower is better)
Translates to: EDCSGRSRVSWSCYGSVVSAPTA*ITAGDG
Trigger: TCCGTCACCAGCTGTGATTCAGGCTGTGGGGGCTGA...CACCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR TCA 90 bp CTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTGAAATCAGCCCCCACAGCCTaGATCACAGCTGGTGACGGA +
Preference number: 4 (lower is better)
Translates to: LLVLLWLGGGSGGCLRLKSAPTA*ITAGDG
Trigger: TCCGTCACCAGCTGTGATTCAGGCTGTGGGGGCTGA...TTTCAGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR TCA 90 bp GGTGCAGCCCTTTGGATCGCACCCCTGGACCTTGATGCTGGGTCTATCCTGGCATTCGGTCATTGTCACTaGGCACCAGTCCAGCCAGAG +
Preference number: 4 (lower is better)
Translates to: GAALWIAPLDLDAGSILAFGHCH*APVQPE
Trigger: CTCTGGCTGGACTGGTGCTCAGTGACAATGACCGAA...TGCCAGGATAGACCCAGCATCAAGGTCCAGGGGTGCGATCCAAAGGGCTGCACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR GCA 90 bp ACCTGCAGAGTAACTCAAGCCAAGCCTCACCTGCCAGGCCCAGGGTGCAGCCCTAGACCAGAGGTCGATTaGCTGCGTATACTCGTGCAG +
Preference number: 4 (lower is better)
Translates to: TCRVTQAKPHLPGPGCSPRPEVD*LRILVQ
Trigger: CTGCACGAGTATACGCAGGCAATCGACCTCTGGTCT...AGGGCTGCACCCTGGGCCTGGCAGGTGAGGCTTGGCTTGAGTTACTCTGCAGGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR GCA 90 bp GAGATGAACCTGCAGAGTAACTCAAGCCAAGCCTCACCTGCCAGGCCCAGGGTGGGTGCACGTAGTTTTTaGCTGGGAAGAGCTGGCGCC +
Preference number: 4 (lower is better)
Translates to: EMNLQSNSSQASPARPRVGARSF*LGRAGA
Trigger: GGCGCCAGCTCTTCCCAGGCAAAAACTACGTGCACC...CACCCTGGGCCTGGCAGGTGAGGCTTGGCTTGAGTTACTCTGCAGGTTCATCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR GCA 90 bp GGTGGGTCTGAGATGAACCTGCAGAGTAACTCAAGCCAAGCCTCACCTGCCAGGTCCCAAGGCACAGGTTaGCTTGGTGGCAGGCTCTGG +
Preference number: 4 (lower is better)
Translates to: GGSEMNLQSNSSQASPARSQGTG*LGGRLW
Trigger: CCAGAGCCTGCCACCAAGGCAACCTGTGCCTTGGGA...CCTGGCAGGTGAGGCTTGGCTTGAGTTACTCTGCAGGTTCATCTCAGACCCACC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR GCA 90 bp ACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCGGATTTGTTGGCGGATaGCCTCCCGTCGTGCATGGA +
Preference number: 4 (lower is better)
Translates to: TAQGGVESPGPVMARWWLGFVGG*PPVVHG
Trigger: TCCATGCACGACGGGAGGGCATCCGCCAACAAATCC...GAGCCACCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR GCA 90 bp GAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTGGATTTGTTGGCGGATaGCCTCCCGTCGTGCATGGA +
Preference number: 4 (lower is better)
Translates to: ESPGPVMARWWLRWLLKAGFVGG*PPVVHG
Trigger: TCCATGCACGACGGGAGGGCATCCGCCAACAAATCC...AGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAGACTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR GCA 90 bp GAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTTCACTAGCCACAGGCTaGAGAGAAGGCTGGAAGCGG +
Preference number: 4 (lower is better)
Translates to: ESPGPVMARWWLRWLLKASLATG*REGWKR
Trigger: CCGCTTCCAGCCTTCTCTGCAGCCTGTGGCTAGTGA...AGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAGACTC
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR GCA 90 bp ACCTGCAGAGTAACTCAAGCCAAGCCTCACCTGCCAGGCCCAGGGTGCAGCCCTATCAACGGTGTCAGGTaGAGGATCAGAGCATGGTGG +
Preference number: 4 (lower is better)
Translates to: TCRVTQAKPHLPGPGCSPINGVR*RIRAWW
Trigger: CCACCATGCTCTGATCCTGCACCTGACACCGTTGAT...AGGGCTGCACCCTGGGCCTGGCAGGTGAGGCTTGGCTTGAGTTACTCTGCAGGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR GCA 90 bp GAGAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTGGCGTAGCCAGCCCCACTaGCCTTTGGAGTGCCAGAGA +
Preference number: 4 (lower is better)
Translates to: EKTAQGGVESPGPVMARWRSQPH*PLECQR
Trigger: TCTCTGGCACTCCAAAGGGCAGTGGGGCTGGCTACG...CCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR GCA 90 bp GCCAGGCCCAGGGTGCAGCCCTTTGGATCGCACCCCTGGACCTTGATGCTGGGTATCTGGATCTCACGCTaGAGAGACTCAATGTCAGCA +
Preference number: 4 (lower is better)
Translates to: ARPRVQPFGSHPWTLMLGIWISR*RDSMSA
Trigger: TGCTGACATTGAGTCTCTGCAGCGTGAGATCCAGAT...ACCCAGCATCAAGGTCCAGGGGTGCGATCCAAAGGGCTGCACCCTGGGCCTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp CTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTGAAATTGCCTGGGAAGAGCTaGCGCCGAGCCAGCATCTCA +
Preference number: 4 (lower is better)
Translates to: LLVLLWLGGGSGGCLRLKLPGKS*RRASIS
Trigger: TGAGATGCTGGCTCGGCGCCAGCTCTTCCCAGGCAA...TTTCAGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp ACCTGCAGAGTAACTCAAGCCAAGCCTCACCTGCCAGGCCCAGGGTGCAGCCCTAGGCACAGGTTGCCTTaGTGGCAGGCTCTGGATATA +
Preference number: 4 (lower is better)
Translates to: TCRVTQAKPHLPGPGCSPRHRLP*WQALDI
Trigger: TATATCCAGAGCCTGCCACCAAGGCAACCTGTGCCT...AGGGCTGCACCCTGGGCCTGGCAGGTGAGGCTTGGCTTGAGTTACTCTGCAGGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp TCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGCTGGCGGTCAGCACCTaGGTATACTGTCTCCCAAGG +
Preference number: 4 (lower is better)
Translates to: SGRSRVSWSCYGSVVAQVLAVST*VYCLPR
Trigger: CCTTGGGAGACAGTATACCCAGGTGCTGACCGCCAG...CACCTGAGCCACCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCCCTGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp GAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTTGGAAGCGGATTTGTTaGCGGATGCCCTCCCGTCGT +
Preference number: 4 (lower is better)
Translates to: ESPGPVMARWWLRWLLKAWKRIC*RMPSRR
Trigger: ACGACGGGAGGGCATCCGCCAACAAATCCGCTTCCA...AGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAGACTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp GGCTGCTTAAGGCTGAAAGGTGGGTCTGAGATGAACCTGCAGAGTAACTCAAGCGTGGAGCAAGCTCACTaGCCGGCGGGGCAGGCTGCA +
Preference number: 4 (lower is better)
Translates to: GCLRLKGGSEMNLQSNSSVEQAH*PAGQAA
Trigger: TGCAGCCTGCCCCGCCGGCCAGTGAGCTTGCTCCAC...GCTTGAGTTACTCTGCAGGTTCATCTCAGACCCACCTTTCAGCCTTAAGCAGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079080.13
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp TCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTGAAGCTTCTCCCGCTCCTTaGCTCTCTCTTGTCGCCTCC +
Preference number: 4 (lower is better)
Translates to: SPGPVMARWWLRWLLKAEASPAP*LSLVAS
Trigger: GGAGGCGACAAGAGAGAGCCAAGGAGCGGGAGAAGC...TTCAGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp GGTGCAGCCCTTTGGATCGCACCCCTGGACCTTGATGCTGGGTCTATCCTGGCAAGGATCTGGAGGTGGTaGGCCAGATGGGAAGTAAGG +
Preference number: 4 (lower is better)
Translates to: GAALWIAPLDLDAGSILARIWRW*ARWEVR
Trigger: CCTTACTTCCCATCTGGCCCACCACCTCCAGATCCT...TGCCAGGATAGACCCAGCATCAAGGTCCAGGGGTGCGATCCAAAGGGCTGCACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp ACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCCCCAGGATCTGGAGGTaGTGGGCCAGATGGGAAGTA +
Preference number: 4 (lower is better)
Translates to: TAQGGVESPGPVMARWWLPRIWR*WARWEV
Trigger: TACTTCCCATCTGGCCCACCACCTCCAGATCCTGGG...GAGCCACCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp GAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGTGCCTGGCCATCCTGTaGCCCATCAGCCACACCCAT +
Preference number: 4 (lower is better)
Translates to: EDCSGRSRVSWSCYGSVVCLAIL*PISHTH
Trigger: ATGGGTGTGGCTGATGGGCCACAGGATGGCCAGGCA...CACCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp GAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGGAGGCTGAGTCTGCCTaGCCATCCTGTGGCCCATCA +
Preference number: 4 (lower is better)
Translates to: EDCSGRSRVSWSCYGSVVEAESA*PSCGPS
Trigger: TGATGGGCCACAGGATGGCCAGGCAGACTCAGCCTC...CACCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp GAGAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTGGGAGGCTGAGTCTGCCTaGCCATCCTGTGGCCCATCA +
Preference number: 4 (lower is better)
Translates to: EKTAQGGVESPGPVMARWEAESA*PSCGPS
Trigger: TGATGGGCCACAGGATGGCCAGGCAGACTCAGCCTC...CCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp GAGATGAACCTGCAGAGTAACTCAAGCCAAGCCTCACCTGCCAGGCCCAGGGTGTTGATGGCCACCTGCTaGCCTGGGGAGCAGGAAAAG +
Preference number: 4 (lower is better)
Translates to: EMNLQSNSSQASPARPRVLMATC*PGEQEK
Trigger: CTTTTCCTGCTCCCCAGGCCAGCAGGTGGCCATCAA...CACCCTGGGCCTGGCAGGTGAGGCTTGGCTTGAGTTACTCTGCAGGTTCATCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101085.9
CDS-3UTR TCA 90 bp GAGAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTGGGGATCTTCAGCTCCCTaGGGGTCCGTTTGGCATTGG +
Preference number: 4 (lower is better)
Translates to: EKTAQGGVESPGPVMARWGSSAP*GSVWHW
Trigger: CCAATGCCAAACGGACCCTCAGGGAGCTGAAGATCC...CCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR TCA 90 bp GAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTCAGAGTGCATGTATTTaGGGCCCCGAAGCAGCTGGT +
Preference number: 4 (lower is better)
Translates to: ESPGPVMARWWLRWLLKAQSACI*GPEAAG
Trigger: ACCAGCTGCTTCGGGGCCTCAAATACATGCACTCTG...AGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAGACTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR TCA 90 bp GGTGCAGCCCTTTGGATCGCACCCCTGGACCTTGATGCTGGGTCTATCCTGGCACCACATACTCAGTCATaGAGTACTGGTGCTCGGCAG +
Preference number: 4 (lower is better)
Translates to: GAALWIAPLDLDAGSILAPHTQS*STGARQ
Trigger: CTGCCGAGCACCAGTACTTCATGACTGAGTATGTGG...TGCCAGGATAGACCCAGCATCAAGGTCCAGGGGTGCGATCCAAAGGGCTGCACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR TCA 90 bp GAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTTCTGATGTAGAAGGCTaGGGGGTGAGCCCAGGATCT +
Preference number: 4 (lower is better)
Translates to: ESPGPVMARWWLRWLLKASDVEG*GVSPGS
Trigger: AGATCCTGGGCTCACCCCTCAGCCTTCTACATCAGA...AGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAGACTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR TCA 90 bp GGTGCAGCCCTTTGGATCGCACCCCTGGACCTTGATGCTGGGTCTATCCTGGCAGCTGAGTCACCAGGTTaGCATCAGGTGACTCTGATG +
Preference number: 4 (lower is better)
Translates to: GAALWIAPLDLDAGSILAAESPG*HQVTLM
Trigger: CATCAGAGTCACCTGATGTCAACCTGGTGACTCAGC...TGCCAGGATAGACCCAGCATCAAGGTCCAGGGGTGCGATCCAAAGGGCTGCACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR GCA 90 bp TCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTGAAGGTGCACGTAGTTTTTaGCTGGGAAGAGCTGGCGCC +
Preference number: 4 (lower is better)
Translates to: SPGPVMARWWLRWLLKAEGARSF*LGRAGA
Trigger: GGCGCCAGCTCTTCCCAGGCAAAAACTACGTGCACC...TTCAGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR GCA 90 bp GGTGGGTCTGAGATGAACCTGCAGAGTAACTCAAGCCAAGCCTCACCTGCCAGGGGTGCACGTAGTTTTTaGCTGGGAAGAGCTGGCGCC +
Preference number: 4 (lower is better)
Translates to: GGSEMNLQSNSSQASPARGARSF*LGRAGA
Trigger: GGCGCCAGCTCTTCCCAGGCAAAAACTACGTGCACC...CCTGGCAGGTGAGGCTTGGCTTGAGTTACTCTGCAGGTTCATCTCAGACCCACC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR GCA 90 bp GAGATGAACCTGCAGAGTAACTCAAGCCAAGCCTCACCTGCCAGGCCCAGGGTGGATGCCCTCCCGTCGTaGATGGAAGTCCTCAATCTC +
Preference number: 4 (lower is better)
Translates to: EMNLQSNSSQASPARPRVDALPS*MEVLNL
Trigger: GAGATTGAGGACTTCCATGCACGACGGGAGGGCATC...CACCCTGGGCCTGGCAGGTGAGGCTTGGCTTGAGTTACTCTGCAGGTTCATCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR GCA 90 bp GGTGGGTCTGAGATGAACCTGCAGAGTAACTCAAGCCAAGCCTCACCTGCCAGGTCACTAGCCACAGGCTaGAGAGAAGGCTGGAAGCGG +
Preference number: 4 (lower is better)
Translates to: GGSEMNLQSNSSQASPARSLATG*REGWKR
Trigger: CCGCTTCCAGCCTTCTCTGCAGCCTGTGGCTAGTGA...CCTGGCAGGTGAGGCTTGGCTTGAGTTACTCTGCAGGTTCATCTCAGACCCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR GCA 90 bp GGTGGGTCTGAGATGAACCTGCAGAGTAACTCAAGCCAAGCCTCACCTGCCAGGAGAGCATGGTGGCAGTaGTGGAGGAGGCGACTCCAT +
Preference number: 4 (lower is better)
Translates to: GGSEMNLQSNSSQASPARRAWWQ*WRRRLH
Trigger: ATGGAGTCGCCTCCTCCAGCACTGCCACCATGCTCT...CCTGGCAGGTGAGGCTTGGCTTGAGTTACTCTGCAGGTTCATCTCAGACCCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR GCA 90 bp GAGAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTGGTTCTTGATGGCCACCTaGTGGCCTGGGGAGCAGGAA +
Preference number: 4 (lower is better)
Translates to: EKTAQGGVESPGPVMARWFLMAT*WPGEQE
Trigger: TTCCTGCTCCCCAGGCCAGCAGGTGGCCATCAAGAA...CCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101085.9
CDS-3UTR CCA 90 bp TCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTGAACACGTAGTTTTTGCCTaGGAAGAGCTGGCGCCGAGC +
Preference number: 4 (lower is better)
Translates to: SPGPVMARWWLRWLLKAEHVVFA*EELAPS
Trigger: GCTCGGCGCCAGCTCTTCCCAGGCAAAAACTACGTG...TTCAGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp TCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTGAACTGGCGGTCAGCACCTaGGTATACTGTCTCCCAAGG +
Preference number: 4 (lower is better)
Translates to: SPGPVMARWWLRWLLKAELAVST*VYCLPR
Trigger: CCTTGGGAGACAGTATACCCAGGTGCTGACCGCCAG...TTCAGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp CTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTGAAACTGGCGGTCAGCACCTaGGTATACTGTCTCCCAAGG +
Preference number: 4 (lower is better)
Translates to: LLVLLWLGGGSGGCLRLKLAVST*VYCLPR
Trigger: CCTTGGGAGACAGTATACCCAGGTGCTGACCGCCAG...TTTCAGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp GCCCAGGGTGCAGCCCTTTGGATCGCACCCCTGGACCTTGATGCTGGGTCTATCTCATCATCAGGGTCATaGTACTTAGCCAGGAAGGGG +
Preference number: 4 (lower is better)
Translates to: AQGAALWIAPLDLDAGSISSSGS*YLARKG
Trigger: CCCCTTCCTGGCTAAGTACCATGACCCTGATGATGA...GATAGACCCAGCATCAAGGTCCAGGGGTGCGATCCAAAGGGCTGCACCCTGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp GAGAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTGGCCCTCCCGTCGTGCATaGAAGTCCTCAATCTCAGCC +
Preference number: 4 (lower is better)
Translates to: EKTAQGGVESPGPVMARWPSRRA*KSSISA
Trigger: GGCTGAGATTGAGGACTTCCATGCACGACGGGAGGG...CCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp GAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGCCCTCCCGTCGTGCATaGAAGTCCTCAATCTCAGCC +
Preference number: 4 (lower is better)
Translates to: EDCSGRSRVSWSCYGSVVPSRRA*KSSISA
Trigger: GGCTGAGATTGAGGACTTCCATGCACGACGGGAGGG...CACCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp TCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTGAACCCTCCCGTCGTGCATaGAAGTCCTCAATCTCAGCC +
Preference number: 4 (lower is better)
Translates to: SPGPVMARWWLRWLLKAEPSRRA*KSSISA
Trigger: GGCTGAGATTGAGGACTTCCATGCACGACGGGAGGG...TTCAGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp ACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCTTGGAGCCCAGGGACTaGGCATCTCAACATCTGGAC +
Preference number: 4 (lower is better)
Translates to: TAQGGVESPGPVMARWWLLEPRD*ASQHLD
Trigger: GTCCAGATGTTGAGATGCCCAGTCCCTGGGCTCCAA...GAGCCACCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp GGTGGGTCTGAGATGAACCTGCAGAGTAACTCAAGCCAAGCCTCACCTGCCAGGTGCAGGATCAGAGCATaGTGGCAGTGCTGGAGGAGG +
Preference number: 4 (lower is better)
Translates to: GGSEMNLQSNSSQASPARCRIRA*WQCWRR
Trigger: CCTCCTCCAGCACTGCCACCATGCTCTGATCCTGCA...CCTGGCAGGTGAGGCTTGGCTTGAGTTACTCTGCAGGTTCATCTCAGACCCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp GAGAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGCAGGATCAGAGCATaGTGGCAGTGCTGGAGGAGG +
Preference number: 4 (lower is better)
Translates to: EKTAQGGVESPGPVMARWCRIRA*WQCWRR
Trigger: CCTCCTCCAGCACTGCCACCATGCTCTGATCCTGCA...CCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp GAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTGGTGGCACAAGTGACTaGGAGGCCAAAAGGCTAGTG +
Preference number: 4 (lower is better)
Translates to: ESPGPVMARWWLRWLLKAGGTSD*EAKRLV
Trigger: CACTAGCCTTTTGGCCTCCCAGTCACTTGTGCCACC...AGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAGACTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp TCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGGTGGCACAAGTGACTaGGAGGCCAAAAGGCTAGTG +
Preference number: 4 (lower is better)
Translates to: SGRSRVSWSCYGSVVAQVGGTSD*EAKRLV
Trigger: CACTAGCCTTTTGGCCTCCCAGTCACTTGTGCCACC...CACCTGAGCCACCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCCCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp GTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTGAAAGGTGGGAGGATCTGGAGGTGGTaGGCCAGATGGGAAGTAAGG +
Preference number: 4 (lower is better)
Translates to: VLLWLGGGSGGCLRLKGGRIWRW*ARWEVR
Trigger: CCTTACTTCCCATCTGGCCCACCACCTCCAGATCCT...CCCACCTTTCAGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp GAGAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTGGCCCAGGATCTGGAGGTaGTGGGCCAGATGGGAAGTA +
Preference number: 4 (lower is better)
Translates to: EKTAQGGVESPGPVMARWPRIWR*WARWEV
Trigger: TACTTCCCATCTGGCCCACCACCTCCAGATCCTGGG...CCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp GAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGGCAGGGTTCATGCCATaGCCCTCAAGCCAGTCAGCA +
Preference number: 4 (lower is better)
Translates to: EDCSGRSRVSWSCYGSVVAGFMP*PSSQSA
Trigger: TGCTGACTGGCTTGAGGGCCATGGCATGAACCCTGC...CACCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp GAGAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTGGGCAGGGTTCATGCCATaGCCCTCAAGCCAGTCAGCA +
Preference number: 4 (lower is better)
Translates to: EKTAQGGVESPGPVMARWAGFMP*PSSQSA
Trigger: TGCTGACTGGCTTGAGGGCCATGGCATGAACCCTGC...CCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR TCA 90 bp GAGAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGCCTATGGTCTCGATaGTCTCGTACTCGTCCCCCA +
Preference number: 4 (lower is better)
Translates to: EKTAQGGVESPGPVMARWCLWSR*SRTRPP
Trigger: TGGGGGACGAGTACGAGATCATCGAGACCATAGGCA...CCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000079080.13
CDS-3UTR TCA 90 bp TCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGAGCGGCTGTGAAGAGTaGATGATCTGGTGTAGGTCG +
Preference number: 4 (lower is better)
Translates to: SGRSRVSWSCYGSVVAQVSGCEE*MIWCRS
Trigger: CGACCTACACCAGATCATTCACTCTTCACAGCCGCT...CACCTGAGCCACCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCCCTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR TCA 90 bp GAGAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTGGCAGGGTGAGCGGCTGTaGAGAGTGAATGATCTGGTG +
Preference number: 4 (lower is better)
Translates to: EKTAQGGVESPGPVMARWQGERL*RVNDLV
Trigger: CACCAGATCATTCACTCTTCACAGCCGCTCACCCTG...CCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR TCA 90 bp CTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTGAAACAGAGTGCATGTATTTaGGGCCCCGAAGCAGCTGGT +
Preference number: 4 (lower is better)
Translates to: LLVLLWLGGGSGGCLRLKQSACI*GPEAAG
Trigger: ACCAGCTGCTTCGGGGCCTCAAATACATGCACTCTG...TTTCAGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR TCA 90 bp GAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTCCACATACTCAGTCATaGAGTACTGGTGCTCGGCAG +
Preference number: 4 (lower is better)
Translates to: ESPGPVMARWWLRWLLKAPHTQS*STGARQ
Trigger: CTGCCGAGCACCAGTACTTCATGACTGAGTATGTGG...AGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAGACTC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR TCA 90 bp ACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCCCACATACTCAGTCATaGAGTACTGGTGCTCGGCAG +
Preference number: 4 (lower is better)
Translates to: TAQGGVESPGPVMARWWLPHTQS*STGARQ
Trigger: CTGCCGAGCACCAGTACTTCATGACTGAGTATGTGG...GAGCCACCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR TCA 90 bp GAGAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTGGACTAGGTGGCACAAGTaGCTGGGAGGCCAAAAGGCT +
Preference number: 4 (lower is better)
Translates to: EKTAQGGVESPGPVMARWTRWHK*LGGQKA
Trigger: AGCCTTTTGGCCTCCCAGTCACTTGTGCCACCTAGT...CCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR TCA 90 bp GGTGGGTCTGAGATGAACCTGCAGAGTAACTCAAGCCAAGCCTCACCTGCCAGGACTAGGTGGCACAAGTaGCTGGGAGGCCAAAAGGCT +
Preference number: 4 (lower is better)
Translates to: GGSEMNLQSNSSQASPARTRWHK*LGGQKA
Trigger: AGCCTTTTGGCCTCCCAGTCACTTGTGCCACCTAGT...CCTGGCAGGTGAGGCTTGGCTTGAGTTACTCTGCAGGTTCATCTCAGACCCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR TCA 90 bp TCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGACTTGGACAGCTGCTaGGTCACCAGGTTGACATCA +
Preference number: 4 (lower is better)
Translates to: SGRSRVSWSCYGSVVAQVDLDSC*VTRLTS
Trigger: TGATGTCAACCTGGTGACTCAGCAGCTGTCCAAGTC...CACCTGAGCCACCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCCCTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR GCA 90 bp CTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTGAAAGCCTGCGTATACTCGTaGAGGGAAAGCATGAGCTCC +
Preference number: 4 (lower is better)
Translates to: LLVLLWLGGGSGGCLRLKACVYS*RESMSS
Trigger: GGAGCTCATGCTTTCCCTGCACGAGTATACGCAGGC...TTTCAGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR GCA 90 bp TCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTGAAGCCTGCGTATACTCGTaGAGGGAAAGCATGAGCTCC +
Preference number: 4 (lower is better)
Translates to: SPGPVMARWWLRWLLKAEACVYS*RESMSS
Trigger: GGAGCTCATGCTTTCCCTGCACGAGTATACGCAGGC...TTCAGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR GCA 90 bp CTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTGAAAGATGCCCTCCCGTCGTaGATGGAAGTCCTCAATCTC +
Preference number: 4 (lower is better)
Translates to: LLVLLWLGGGSGGCLRLKDALPS*MEVLNL
Trigger: GAGATTGAGGACTTCCATGCACGACGGGAGGGCATC...TTTCAGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR GCA 90 bp GGTGCAGCCCTTTGGATCGCACCCCTGGACCTTGATGCTGGGTCTATCCTGGCAGGCAGCTTTGAGGGCTaGTTTGGTATTGTCGGAGAT +
Preference number: 4 (lower is better)
Translates to: GAALWIAPLDLDAGSILAGSFEG*FGIVGD
Trigger: ATCTCCGACAATACCAAAGCAGCCCTCAAAGCTGCC...TGCCAGGATAGACCCAGCATCAAGGTCCAGGGGTGCGATCCAAAGGGCTGCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079080.13
ENSMUST00000108714.2
CDS-3UTR GCA 90 bp ACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCTCTCTTGTCGCCTCCTaGGCTTCTCTTCTCGTTCTC +
Preference number: 4 (lower is better)
Translates to: TAQGGVESPGPVMARWWLSLVAS*ASLLVL
Trigger: GAGAACGAGAAGAGAAGCGCAGGAGGCGACAAGAGA...GAGCCACCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR GCA 90 bp TCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGTCTCTTGTCGCCTCCTaGGCTTCTCTTCTCGTTCTC +
Preference number: 4 (lower is better)
Translates to: SGRSRVSWSCYGSVVAQVSLVAS*ASLLVL
Trigger: GAGAACGAGAAGAGAAGCGCAGGAGGCGACAAGAGA...CACCTGAGCCACCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCCCTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR GCA 90 bp GAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTTCTCTTGTCGCCTCCTaGGCTTCTCTTCTCGTTCTC +
Preference number: 4 (lower is better)
Translates to: ESPGPVMARWWLRWLLKASLVAS*ASLLVL
Trigger: GAGAACGAGAAGAGAAGCGCAGGAGGCGACAAGAGA...AGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAGACTC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp GCCCAGGGTGCAGCCCTTTGGATCGCACCCCTGGACCTTGATGCTGGGTCTATCGGGTCCGTTTGGCATTaGTCACCACATCAAAAGCAT +
Preference number: 4 (lower is better)
Translates to: AQGAALWIAPLDLDAGSIGSVWH*SPHQKH
Trigger: ATGCTTTTGATGTGGTGACCAATGCCAAACGGACCC...GATAGACCCAGCATCAAGGTCCAGGGGTGCGATCCAAAGGGCTGCACCCTGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp ACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGCCCCGAAGCAGCTaGTACAGGAAGTATCTCACA +
Preference number: 4 (lower is better)
Translates to: TAQGGVESPGPVMARWWLRPRSS*YRKYLT
Trigger: TGTGAGATACTTCCTGTACCAGCTGCTTCGGGGCCT...GAGCCACCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp GAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTAGGCACAGGTTGCCTTaGTGGCAGGCTCTGGATATA +
Preference number: 4 (lower is better)
Translates to: ESPGPVMARWWLRWLLKARHRLP*WQALDI
Trigger: TATATCCAGAGCCTGCCACCAAGGCAACCTGTGCCT...AGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAGACTC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp ACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGCACAGGTTGCCTTaGTGGCAGGCTCTGGATATA +
Preference number: 4 (lower is better)
Translates to: TAQGGVESPGPVMARWWLRHRLP*WQALDI
Trigger: TATATCCAGAGCCTGCCACCAAGGCAACCTGTGCCT...GAGCCACCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp GGCTGCTTAAGGCTGAAAGGTGGGTCTGAGATGAACCTGCAGAGTAACTCAAGCAGCAGGGAGAGGGCCTaGCGGTCAGCACCTGGGTAT +
Preference number: 4 (lower is better)
Translates to: GCLRLKGGSEMNLQSNSSSRERA*RSAPGY
Trigger: ATACCCAGGTGCTGACCGCCAGGCCCTCTCCCTGCT...GCTTGAGTTACTCTGCAGGTTCATCTCAGACCCACCTTTCAGCCTTAAGCAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp GGTGCAGCCCTTTGGATCGCACCCCTGGACCTTGATGCTGGGTCTATCCTGGCATCATCATCAGGGTCATaGTACTTAGCCAGGAAGGGG +
Preference number: 4 (lower is better)
Translates to: GAALWIAPLDLDAGSILASSSGS*YLARKG
Trigger: CCCCTTCCTGGCTAAGTACCATGACCCTGATGATGA...TGCCAGGATAGACCCAGCATCAAGGTCCAGGGGTGCGATCCAAAGGGCTGCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp GGTGCAGCCCTTTGGATCGCACCCCTGGACCTTGATGCTGGGTCTATCCTGGCAAGCAAAGTCAAAAGGTaGGGCGCAATCAGGCTCATC +
Preference number: 4 (lower is better)
Translates to: GAALWIAPLDLDAGSILASKVKR*GAIRLI
Trigger: GATGAGCCTGATTGCGCCCCACCTTTTGACTTTGCT...TGCCAGGATAGACCCAGCATCAAGGTCCAGGGGTGCGATCCAAAGGGCTGCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp ACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCGGGCATCTCAACATCTaGACACACAGGCTCACTAGC +
Preference number: 4 (lower is better)
Translates to: TAQGGVESPGPVMARWWLGHLNI*THRLTS
Trigger: GCTAGTGAGCCTGTGTGTCCAGATGTTGAGATGCCC...GAGCCACCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp TCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTGAATTGGAGCCCAGGGACTaGGCATCTCAACATCTGGAC +
Preference number: 4 (lower is better)
Translates to: SPGPVMARWWLRWLLKAELEPRD*ASQHLD
Trigger: GTCCAGATGTTGAGATGCCCAGTCCCTGGGCTCCAA...TTCAGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp GAGATGAACCTGCAGAGTAACTCAAGCCAAGCCTCACCTGCCAGGCCCAGGGTGAGGTGGTGGGCCAGATaGGAAGTAAGGCAGAACTTC +
Preference number: 4 (lower is better)
Translates to: EMNLQSNSSQASPARPRVRWWAR*EVRQNF
Trigger: GAAGTTCTGCCTTACTTCCCATCTGGCCCACCACCT...CACCCTGGGCCTGGCAGGTGAGGCTTGGCTTGAGTTACTCTGCAGGTTCATCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp GAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTAGGTGGTGGGCCAGATaGGAAGTAAGGCAGAACTTC +
Preference number: 4 (lower is better)
Translates to: ESPGPVMARWWLRWLLKARWWAR*EVRQNF
Trigger: GAAGTTCTGCCTTACTTCCCATCTGGCCCACCACCT...AGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAGACTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp GAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTGTCAGACAGCAGCATTaGGGAGTCCATCTGGATCTC +
Preference number: 4 (lower is better)
Translates to: ESPGPVMARWWLRWLLKAVRQQH*GVHLDL
Trigger: GAGATCCAGATGGACTCCCCAATGCTGCTGTCTGAC...AGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAGACTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR TCA 90 bp CTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTGAAAAGCGGCTGTGAAGAGTaGATGATCTGGTGTAGGTCG +
Preference number: 4 (lower is better)
Translates to: LLVLLWLGGGSGGCLRLKSGCEE*MIWCRS
Trigger: CGACCTACACCAGATCATTCACTCTTCACAGCCGCT...TTTCAGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR TCA 90 bp GAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGGACTTGGACAGCTGCTaGGTCACCAGGTTGACATCA +
Preference number: 4 (lower is better)
Translates to: EDCSGRSRVSWSCYGSVVDLDSC*VTRLTS
Trigger: TGATGTCAACCTGGTGACTCAGCAGCTGTCCAAGTC...CACCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR TCA 90 bp CTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTGAAAGACTTGGACAGCTGCTaGGTCACCAGGTTGACATCA +
Preference number: 4 (lower is better)
Translates to: LLVLLWLGGGSGGCLRLKDLDSC*VTRLTS
Trigger: TGATGTCAACCTGGTGACTCAGCAGCTGTCCAAGTC...TTTCAGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR GCA 90 bp GGCTGCTTAAGGCTGAAAGGTGGGTCTGAGATGAACCTGCAGAGTAACTCAAGCTCCCAAGGCACAGGTTaGCTTGGTGGCAGGCTCTGG +
Preference number: 4 (lower is better)
Translates to: GCLRLKGGSEMNLQSNSSSQGTG*LGGRLW
Trigger: CCAGAGCCTGCCACCAAGGCAACCTGTGCCTTGGGA...GCTTGAGTTACTCTGCAGGTTCATCTCAGACCCACCTTTCAGCCTTAAGCAGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR GCA 90 bp TCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTGAAATCAACGGTGTCAGGTaGAGGATCAGAGCATGGTGG +
Preference number: 4 (lower is better)
Translates to: SPGPVMARWWLRWLLKAEINGVR*RIRAWW
Trigger: CCACCATGCTCTGATCCTGCACCTGACACCGTTGAT...TTCAGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp GGCTGCTTAAGGCTGAAAGGTGGGTCTGAGATGAACCTGCAGAGTAACTCAAGCTTGCCTGGGAAGAGCTaGCGCCGAGCCAGCATCTCA +
Preference number: 4 (lower is better)
Translates to: GCLRLKGGSEMNLQSNSSLPGKS*RRASIS
Trigger: TGAGATGCTGGCTCGGCGCCAGCTCTTCCCAGGCAA...GCTTGAGTTACTCTGCAGGTTCATCTCAGACCCACCTTTCAGCCTTAAGCAGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp GTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTGAAAGGTGGGAGCAAAGTCAAAAGGTaGGGCGCAATCAGGCTCATC +
Preference number: 4 (lower is better)
Translates to: VLLWLGGGSGGCLRLKGGSKVKR*GAIRLI
Trigger: GATGAGCCTGATTGCGCCCCACCTTTTGACTTTGCT...CCCACCTTTCAGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp CTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTGAAAGGGCATCTCAACATCTaGACACACAGGCTCACTAGC +
Preference number: 4 (lower is better)
Translates to: LLVLLWLGGGSGGCLRLKGHLNI*THRLTS
Trigger: GCTAGTGAGCCTGTGTGTCCAGATGTTGAGATGCCC...TTTCAGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp GAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGGGGCATCTCAACATCTaGACACACAGGCTCACTAGC +
Preference number: 4 (lower is better)
Translates to: EDCSGRSRVSWSCYGSVVGHLNI*THRLTS
Trigger: GCTAGTGAGCCTGTGTGTCCAGATGTTGAGATGCCC...CACCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp GGCTGCTTAAGGCTGAAAGGTGGGTCTGAGATGAACCTGCAGAGTAACTCAAGCGCTTCTCCCGCTCCTTaGCTCTCTCTTGTCGCCTCC +
Preference number: 4 (lower is better)
Translates to: GCLRLKGGSEMNLQSNSSASPAP*LSLVAS
Trigger: GGAGGCGACAAGAGAGAGCCAAGGAGCGGGAGAAGC...GCTTGAGTTACTCTGCAGGTTCATCTCAGACCCACCTTTCAGCCTTAAGCAGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp AATACAATACTGGAGAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATAGGGCCAGCAGGCTaGGGAACAGGGCCAGGGGGT +
Preference number: 4 (lower is better)
Translates to: NTILEKTAQGGVESPGPVIGPAG*GTGPGG
Trigger: ACCCCCTGGCCCTGTTCCCCAGCCTGCTGGCCCTAT...AACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTCTCCAGTATTGTATT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp ACAATACTGGAGAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGTGGAAGGGGCAGTCTaGAGCGGAGCAGGGATAGGG +
Preference number: 4 (lower is better)
Translates to: TILEKTAQGGVESPGPVMVEGAV*SGAGIG
Trigger: CCCTATCCCTGCTCCGCTCCAGACTGCCCCTTCCAC...CATAACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTCTCCAGTATTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp ACAATACTGGAGAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGGTGAGCCCAGGATCTaGAGGTGGTGGGCCAGATGG +
Preference number: 4 (lower is better)
Translates to: TILEKTAQGGVESPGPVMGEPRI*RWWARW
Trigger: CCATCTGGCCCACCACCTCCAGATCCTGGGCTCACC...CATAACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTCTCCAGTATTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp GGTGGGTCTGAGATGAACCTGCAGAGTAACTCAAGCCAAGCCTCACCTGCCAGGATTGGGGAGTCCATCTaGATCTCACGCTGCAGAGAC +
Preference number: 4 (lower is better)
Translates to: GGSEMNLQSNSSQASPARIGESI*ISRCRD
Trigger: GTCTCTGCAGCGTGAGATCCAGATGGACTCCCCAAT...CCTGGCAGGTGAGGCTTGGCTTGAGTTACTCTGCAGGTTCATCTCAGACCCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp GAGAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTGGATTGGGGAGTCCATCTaGATCTCACGCTGCAGAGAC +
Preference number: 4 (lower is better)
Translates to: EKTAQGGVESPGPVMARWIGESI*ISRCRD
Trigger: GTCTCTGCAGCGTGAGATCCAGATGGACTCCCCAAT...CCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp GAGAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTGGGTCAGACAGCAGCATTaGGGAGTCCATCTGGATCTC +
Preference number: 4 (lower is better)
Translates to: EKTAQGGVESPGPVMARWVRQQH*GVHLDL
Trigger: GAGATCCAGATGGACTCCCCAATGCTGCTGTCTGAC...CCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR TCA 90 bp GAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGTCACGGTGGATGACCTaGGCAGAGTGCATGTATTTG +
Preference number: 4 (lower is better)
Translates to: EDCSGRSRVSWSCYGSVVSRWMT*AECMYL
Trigger: CAAATACATGCACTCTGCTCAGGTCATCCACCGTGA...CACCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR TCA 90 bp TCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGTTCCCAACACCATCATaGTCAGCTGTAACTGGTGCA +
Preference number: 4 (lower is better)
Translates to: SGRSRVSWSCYGSVVAQVFPTPS*SAVTGA
Trigger: TGCACCAGTTACAGCTGATCATGATGGTGTTGGGAA...CACCTGAGCCACCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCCCTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR TCA 90 bp GAGATGAACCTGCAGAGTAACTCAAGCCAAGCCTCACCTGCCAGGCCCAGGGTGTTCCCAACACCATCATaGTCAGCTGTAACTGGTGCA +
Preference number: 4 (lower is better)
Translates to: EMNLQSNSSQASPARPRVFPTPS*SAVTGA
Trigger: TGCACCAGTTACAGCTGATCATGATGGTGTTGGGAA...CACCCTGGGCCTGGCAGGTGAGGCTTGGCTTGAGTTACTCTGCAGGTTCATCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR GCA 90 bp GGCTGCTTAAGGCTGAAAGGTGGGTCTGAGATGAACCTGCAGAGTAACTCAAGCGGATTTGTTGGCGGATaGCCTCCCGTCGTGCATGGA +
Preference number: 4 (lower is better)
Translates to: GCLRLKGGSEMNLQSNSSGFVGG*PPVVHG
Trigger: TCCATGCACGACGGGAGGGCATCCGCCAACAAATCC...GCTTGAGTTACTCTGCAGGTTCATCTCAGACCCACCTTTCAGCCTTAAGCAGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR GCA 90 bp ACAATACTGGAGAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGCGTAGCCAGCCCCACTaGCCTTTGGAGTGCCAGAGA +
Preference number: 4 (lower is better)
Translates to: TILEKTAQGGVESPGPVMRSQPH*PLECQR
Trigger: TCTCTGGCACTCCAAAGGGCAGTGGGGCTGGCTACG...CATAACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTCTCCAGTATTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR GCA 90 bp TCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGATCTGGATCTCACGCTaGAGAGACTCAATGTCAGCA +
Preference number: 4 (lower is better)
Translates to: SGRSRVSWSCYGSVVAQVIWISR*RDSMSA
Trigger: TGCTGACATTGAGTCTCTGCAGCGTGAGATCCAGAT...CACCTGAGCCACCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCCCTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp ACAATACTGGAGAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGTTGCCTGGGAAGAGCTaGCGCCGAGCCAGCATCTCA +
Preference number: 4 (lower is better)
Translates to: TILEKTAQGGVESPGPVMLPGKS*RRASIS
Trigger: TGAGATGCTGGCTCGGCGCCAGCTCTTCCCAGGCAA...CATAACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTCTCCAGTATTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp GAGAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTGGTCATCATCAGGGTCATaGTACTTAGCCAGGAAGGGG +
Preference number: 4 (lower is better)
Translates to: EKTAQGGVESPGPVMARWSSSGS*YLARKG
Trigger: CCCCTTCCTGGCTAAGTACCATGACCCTGATGATGA...CCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp TCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTGAAAGCAAAGTCAAAAGGTaGGGCGCAATCAGGCTCATC +
Preference number: 4 (lower is better)
Translates to: SPGPVMARWWLRWLLKAESKVKR*GAIRLI
Trigger: GATGAGCCTGATTGCGCCCCACCTTTTGACTTTGCT...TTCAGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp GGCTGCTTAAGGCTGAAAGGTGGGTCTGAGATGAACCTGCAGAGTAACTCAAGCTGGAAGCGGATTTGTTaGCGGATGCCCTCCCGTCGT +
Preference number: 4 (lower is better)
Translates to: GCLRLKGGSEMNLQSNSSWKRIC*RMPSRR
Trigger: ACGACGGGAGGGCATCCGCCAACAAATCCGCTTCCA...GCTTGAGTTACTCTGCAGGTTCATCTCAGACCCACCTTTCAGCCTTAAGCAGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp GGCTGCTTAAGGCTGAAAGGTGGGTCTGAGATGAACCTGCAGAGTAACTCAAGCCCCAGGATCTGGAGGTaGTGGGCCAGATGGGAAGTA +
Preference number: 4 (lower is better)
Translates to: GCLRLKGGSEMNLQSNSSPRIWR*WARWEV
Trigger: TACTTCCCATCTGGCCCACCACCTCCAGATCCTGGG...GCTTGAGTTACTCTGCAGGTTCATCTCAGACCCACCTTTCAGCCTTAAGCAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR TCA 90 bp GGCTGCTTAAGGCTGAAAGGTGGGTCTGAGATGAACCTGCAGAGTAACTCAAGCCAGGGTGAGCGGCTGTaGAGAGTGAATGATCTGGTG +
Preference number: 4 (lower is better)
Translates to: GCLRLKGGSEMNLQSNSSQGERL*RVNDLV
Trigger: CACCAGATCATTCACTCTTCACAGCCGCTCACCCTG...GCTTGAGTTACTCTGCAGGTTCATCTCAGACCCACCTTTCAGCCTTAAGCAGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR TCA 90 bp TCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTGAATTCCCAACACCATCATaGTCAGCTGTAACTGGTGCA +
Preference number: 4 (lower is better)
Translates to: SPGPVMARWWLRWLLKAEFPTPS*SAVTGA
Trigger: TGCACCAGTTACAGCTGATCATGATGGTGTTGGGAA...TTCAGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR TCA 90 bp AATACAATACTGGAGAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTTCAGCCCCCACAGCCTaGATCACAGCTGGTGACGGA +
Preference number: 4 (lower is better)
Translates to: NTILEKTAQGGVESPGPVSAPTA*ITAGDG
Trigger: TCCGTCACCAGCTGTGATTCAGGCTGTGGGGGCTGA...AACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTCTCCAGTATTGTATT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR GCA 90 bp GAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGATCTGGATCTCACGCTaGAGAGACTCAATGTCAGCA +
Preference number: 4 (lower is better)
Translates to: EDCSGRSRVSWSCYGSVVIWISR*RDSMSA
Trigger: TGCTGACATTGAGTCTCTGCAGCGTGAGATCCAGAT...CACCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp CTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTGAAAGGGTCCGTTTGGCATTaGTCACCACATCAAAAGCAT +
Preference number: 4 (lower is better)
Translates to: LLVLLWLGGGSGGCLRLKGSVWH*SPHQKH
Trigger: ATGCTTTTGATGTGGTGACCAATGCCAAACGGACCC...TTTCAGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp ACAATACTGGAGAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGCACGTAGTTTTTGCCTaGGAAGAGCTGGCGCCGAGC +
Preference number: 4 (lower is better)
Translates to: TILEKTAQGGVESPGPVMHVVFA*EELAPS
Trigger: GCTCGGCGCCAGCTCTTCCCAGGCAAAAACTACGTG...CATAACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTCTCCAGTATTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR TCA 90 bp ACAATACTGGAGAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGTCTGATGTAGAAGGCTaGGGGGTGAGCCCAGGATCT +
Preference number: 4 (lower is better)
Translates to: TILEKTAQGGVESPGPVMSDVEG*GVSPGS
Trigger: AGATCCTGGGCTCACCCCTCAGCCTTCTACATCAGA...CATAACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTCTCCAGTATTGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR GCA 90 bp AATACAATACTGGAGAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTAGAGCATGGTGGCAGTaGTGGAGGAGGCGACTCCAT +
Preference number: 4 (lower is better)
Translates to: NTILEKTAQGGVESPGPVRAWWQ*WRRRLH
Trigger: ATGGAGTCGCCTCCTCCAGCACTGCCACCATGCTCT...AACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTCTCCAGTATTGTATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR GCA 90 bp AATACAATACTGGAGAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTTTCTTGATGGCCACCTaGTGGCCGCCTCTGGAAAGC +
Preference number: 4 (lower is better)
Translates to: NTILEKTAQGGVESPGPVFLMAT*WPPLES
Trigger: GCTTTCCAGAGGCGGCCAGCAGGTGGCCATCAAGAA...AACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTCTCCAGTATTGTATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp AATACAATACTGGAGAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTGGCTGCAGAGAAGGCTaGAAGCGGATTTGTTGGCGG +
Preference number: 4 (lower is better)
Translates to: NTILEKTAQGGVESPGPVGCREG*KRICWR
Trigger: CCGCCAACAAATCCGCTTCCAGCCTTCTCTGCAGCC...AACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTCTCCAGTATTGTATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp AATACAATACTGGAGAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTTGCAGGATCAGAGCATaGTGGCAGTGCTGGAGGAGG +
Preference number: 4 (lower is better)
Translates to: NTILEKTAQGGVESPGPVCRIRA*WQCWRR
Trigger: CCTCCTCCAGCACTGCCACCATGCTCTGATCCTGCA...AACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTCTCCAGTATTGTATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp AATACAATACTGGAGAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTGCAGGGTTCATGCCATaGCCCTCAAGCCAGTCAGCA +
Preference number: 4 (lower is better)
Translates to: NTILEKTAQGGVESPGPVAGFMP*PSSQSA
Trigger: TGCTGACTGGCTTGAGGGCCATGGCATGAACCCTGC...AACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTCTCCAGTATTGTATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR TCA 90 bp AATACAATACTGGAGAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTCAGAGTGCATGTATTTaGGGCCCCGAAGCAGCTGGT +
Preference number: 4 (lower is better)
Translates to: NTILEKTAQGGVESPGPVQSACI*GPEAAG
Trigger: ACCAGCTGCTTCGGGGCCTCAAATACATGCACTCTG...AACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTCTCCAGTATTGTATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR TCA 90 bp ACAATACTGGAGAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTGAGTCACCAGGTTaGCATCAGGTGACTCTGATG +
Preference number: 4 (lower is better)
Translates to: TILEKTAQGGVESPGPVMAESPG*HQVTLM
Trigger: CATCAGAGTCACCTGATGTCAACCTGGTGACTCAGC...CATAACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTCTCCAGTATTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR GCA 90 bp ACAATACTGGAGAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGAGACCAGAGGTCGATTaGCTGCGTATACTCGTGCAG +
Preference number: 4 (lower is better)
Translates to: TILEKTAQGGVESPGPVMRPEVD*LRILVQ
Trigger: CTGCACGAGTATACGCAGGCAATCGACCTCTGGTCT...CATAACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTCTCCAGTATTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR TCA 90 bp AATACAATACTGGAGAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTAGCGGCTGTGAAGAGTaGATGATCTGGTGTAGGTCG +
Preference number: 4 (lower is better)
Translates to: NTILEKTAQGGVESPGPVSGCEE*MIWCRS
Trigger: CGACCTACACCAGATCATTCACTCTTCACAGCCGCT...AACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTCTCCAGTATTGTATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR TCA 90 bp AATACAATACTGGAGAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTGCTGAGTCACCAGGTTaGCATCAGGTGACTCTGATG +
Preference number: 4 (lower is better)
Translates to: NTILEKTAQGGVESPGPVAESPG*HQVTLM
Trigger: CATCAGAGTCACCTGATGTCAACCTGGTGACTCAGC...AACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTCTCCAGTATTGTATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR GCA 90 bp AATACAATACTGGAGAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATCAACGGTGTCAGGTaGAGGATCAGAGCATGGTGG +
Preference number: 4 (lower is better)
Translates to: NTILEKTAQGGVESPGPVINGVR*RIRAWW
Trigger: CCACCATGCTCTGATCCTGCACCTGACACCGTTGAT...AACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTCTCCAGTATTGTATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp AATACAATACTGGAGAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTAGGCCCCGAAGCAGCTaGTACAGGAAGTATCTCACA +
Preference number: 4 (lower is better)
Translates to: NTILEKTAQGGVESPGPVRPRSS*YRKYLT
Trigger: TGTGAGATACTTCCTGTACCAGCTGCTTCGGGGCCT...AACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTCTCCAGTATTGTATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CCA 90 bp AATACAATACTGGAGAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTAGGTGGTGGGCCAGATaGGAAGTAAGGCAGAACTTC +
Preference number: 4 (lower is better)
Translates to: NTILEKTAQGGVESPGPVRWWAR*EVRQNF
Trigger: GAAGTTCTGCCTTACTTCCCATCTGGCCCACCACCT...AACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTCTCCAGTATTGTATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR TCA 90 bp AATACAATACTGGAGAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTTCACGGTGGATGACCTaGGCAGAGTGCATGTATTTG +
Preference number: 4 (lower is better)
Translates to: NTILEKTAQGGVESPGPVSRWMT*AECMYL
Trigger: CAAATACATGCACTCTGCTCAGGTCATCCACCGTGA...AACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTCTCCAGTATTGTATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS TCA 90 bp GCTTTGAGCAGGGCCAGGTTCTTGGCCACCACAGAGGCAGCGGTGTaGACGGGTTCTGCCTTCACCCTCCCAGGGGGCTCCCCAGAGCCA +
Preference number: 5 (lower is better)
Translates to: ALSRARFLATTEAAV*TGSAFTLPGGSPEP
Trigger: TGGCTCTGGGGAGCCCCCTGGGAGGGTGAAGGCAGAACCCGTTCACACCGCTGCCTCTGTGGTGGCCAAGAACCTGGCCCTGCTCAAAGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000079080.13
CDS-3UTR CAA 90 bp GCCAGGCCCAGGGTGCAGCCCTTTGGATCGCACCCCTGGACCTTGATGCTGGGTAGGCTGGAAGCGGATTaGTTGGCGGATGCCCTCCCG +
Preference number: 5 (lower is better)
Translates to: ARPRVQPFGSHPWTLMLGRLEAD*LADALP
Trigger: CGGGAGGGCATCCGCCAACAAATCCGCTTCCAGCCT...ACCCAGCATCAAGGTCCAGGGGTGCGATCCAAAGGGCTGCACCCTGGGCCTGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS CCA 90 bp CCAGGAAGGGGTGGCGAAGGGCAGCAGCAGCTGAGATTCGGGCACTaGGTTCAAATCGCAACATGCGTCCCAGCAGGGAGAGGGCCTGGC +
Preference number: 5 (lower is better)
Translates to: PGRGGEGQQQLRFGH*VQIATCVPAGRGPG
Trigger: GCCAGGCCCTCTCCCTGCTGGGACGCATGTTGCGATTTGAACCCAGTGCCCGAATCTCAGCTGCTGCTGCCCTTCGCCACCCCTTCCTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS CCA 90 bp TCGCAACATGCGTCCCAGCAGGGAGAGGGCCTGGCGGTCAGCACCTaGGTATACTGTCTCCCAAGGCACAGGTTGCCTTGGTGGCAGGCT +
Preference number: 5 (lower is better)
Translates to: SQHASQQGEGLAVST*VYCLPRHRLPWWQA
Trigger: AGCCTGCCACCAAGGCAACCTGTGCCTTGGGAGACAGTATACCCAGGTGCTGACCGCCAGGCCCTCTCCCTGCTGGGACGCATGTTGCGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS TCA 90 bp CGTACTCGTCCCCCACGTCAAAGGTCACGTCGAAGGAGCGGGCTTTaGGCAGGGCCAGGTTCTTGGCCACCACAGAGGCAGCGGTGTGAA +
Preference number: 5 (lower is better)
Translates to: RTRPPRQRSRRRSGL*AGPGSWPPQRQRCE
Trigger: TTCACACCGCTGCCTCTGTGGTGGCCAAGAACCTGGCCCTGCTCAAAGCCCGCTCCTTCGACGTGACCTTTGACGTGGGGGACGAGTACG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000079080.13
CDS TCA 90 bp TCTTGTCGCCTCCTGCGCTTCTCTTCTCGTTCTCGCTGGCGTTCCTaGGCTGTCACGGGCTTTCGAGGCTCAGGCGCCTCCAAGGGTGCA +
Preference number: 5 (lower is better)
Translates to: SCRLLRFSSRSRWRS*AVTGFRGSGASKGA
Trigger: TGCACCCTTGGAGGCGCCTGAGCCTCGAAAGCCCGTGACAGCTCAGGAACGCCAGCGAGAACGAGAAGAGAAGCGCAGGAGGCGACAAGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
ENSMUST00000153441.2
CDS GCA 90 bp CTTGTCGTCGCTTCTCCCGCTCCTTGGCTCTCTCTTGTCGCCTCCTaGGCTTCTCTTCTCGTTCTCGCTGGCGTTCCTGAGCTGTCACGG +
Preference number: 5 (lower is better)
Translates to: LVVASPAPWLSLVAS*ASLLVLAGVPELSR
Trigger: CCGTGACAGCTCAGGAACGCCAGCGAGAACGAGAAGAGAAGCGCAGGAGGCGACAAGAGAGAGCCAAGGAGCGGGAGAAGCGACGACAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
ENSMUST00000153441.2
CDS CCA 90 bp GCGGTCAGCACCTGGGTATACTGTCTCCCAAGGCACAGGTTGCCTTaGTGGCAGGCTCTGGATATAGGCTCGCACCCTTTCAGCCCCCAC +
Preference number: 5 (lower is better)
Translates to: AVSTWVYCLPRHRLP*WQALDIGSHPFSPH
Trigger: GTGGGGGCTGAAAGGGTGCGAGCCTATATCCAGAGCCTGCCACCAAGGCAACCTGTGCCTTGGGAGACAGTATACCCAGGTGCTGACCGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS CCA 90 bp GCACTGGGTTCAAATCGCAACATGCGTCCCAGCAGGGAGAGGGCCTaGCGGTCAGCACCTGGGTATACTGTCTCCCAAGGCACAGGTTGC +
Preference number: 5 (lower is better)
Translates to: ALGSNRNMRPSRERA*RSAPGYTVSQGTGC
Trigger: GCAACCTGTGCCTTGGGAGACAGTATACCCAGGTGCTGACCGCCAGGCCCTCTCCCTGCTGGGACGCATGTTGCGATTTGAACCCAGTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS CCA 90 bp CAGATCAACGGTGTCAGGTGCAGGATCAGAGCATGGTGGCAGTGCTaGAGGAGGCGACTCCATGGCACAGTCTCCACTTGGAGCCCAGGG +
Preference number: 5 (lower is better)
Translates to: QINGVRCRIRAWWQC*RRRLHGTVSTWSPG
Trigger: CCCTGGGCTCCAAGTGGAGACTGTGCCATGGAGTCGCCTCCTCCAGCACTGCCACCATGCTCTGATCCTGCACCTGACACCGTTGATCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
ENSMUST00000153441.2
CDS-3UTR CAA 90 bp TCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTGAAAGCAGGGCCAGGTTCTaGGCCACCACAGAGGCAGCG +
Preference number: 5 (lower is better)
Translates to: SPGPVMARWWLRWLLKAESRARF*ATTEAA
Trigger: CGCTGCCTCTGTGGTGGCCAAGAACCTGGCCCTGCT...TTCAGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079080.13
CDS-3UTR CAA 90 bp ACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCCTCCCAAGGCACAGGTaGCCTTGGTGGCAGGCTCTG +
Preference number: 5 (lower is better)
Translates to: TAQGGVESPGPVMARWWLLPRHR*PWWQAL
Trigger: CAGAGCCTGCCACCAAGGCAACCTGTGCCTTGGGAG...GAGCCACCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CAA 90 bp GAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTCTCCCAAGGCACAGGTaGCCTTGGTGGCAGGCTCTG +
Preference number: 5 (lower is better)
Translates to: ESPGPVMARWWLRWLLKALPRHR*PWWQAL
Trigger: CAGAGCCTGCCACCAAGGCAACCTGTGCCTTGGGAG...AGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAGACTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CAA 90 bp ACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCCTGGAAGCGGATTTGTaGGCGGATGCCCTCCCGTCG +
Preference number: 5 (lower is better)
Translates to: TAQGGVESPGPVMARWWLLEADL*ADALPS
Trigger: CGACGGGAGGGCATCCGCCAACAAATCCGCTTCCAG...GAGCCACCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CAA 90 bp ACCTGCAGAGTAACTCAAGCCAAGCCTCACCTGCCAGGCCCAGGGTGCAGCCCTCTGCTCCTTAGGGACTaGAGCAGGGCAGCTTTGAGG +
Preference number: 5 (lower is better)
Translates to: TCRVTQAKPHLPGPGCSPLLLRD*SRAALR
Trigger: CCTCAAAGCTGCCCTGCTCAAGTCCCTAAGGAGCAG...AGGGCTGCACCCTGGGCCTGGCAGGTGAGGCTTGGCTTGAGTTACTCTGCAGGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079080.13
ENSMUST00000108714.2
CDS GCA 90 bp CCCTCTCTTTTTGGTGGAGCAAGCTCACTGGCCGGCGGGGCAGGCTaGAGAGTCAGATCAACGGTGTCAGGTGCAGGATCAGAGCATGGT +
Preference number: 5 (lower is better)
Translates to: PSLFGGASSLAGGAG*RVRSTVSGAGSEHG
Trigger: ACCATGCTCTGATCCTGCACCTGACACCGTTGATCTGACTCTGCAGCCTGCCCCGCCGGCCAGTGAGCTTGCTCCACCAAAAAGAGAGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000108714.2
ENSMUST00000153441.2
CDS CCA 90 bp GTCAGCACCTGGGTATACTGTCTCCCAAGGCACAGGTTGCCTTGGTaGCAGGCTCTGGATATAGGCTCGCACCCTTTCAGCCCCCACAGC +
Preference number: 5 (lower is better)
Translates to: VSTWVYCLPRHRLPW*QALDIGSHPFSPHS
Trigger: GCTGTGGGGGCTGAAAGGGTGCGAGCCTATATCCAGAGCCTGCCACCAAGGCAACCTGTGCCTTGGGAGACAGTATACCCAGGTGCTGAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS CCA 90 bp GGCTCACTAGCCACAGGCTGCAGAGAAGGCTGGAAGCGGATTTGTTaGCGGATGCCCTCCCGTCGTGCATGGAAGTCCTCAATCTCAGCC +
Preference number: 5 (lower is better)
Translates to: GSLATGCREGWKRIC*RMPSRRAWKSSISA
Trigger: GGCTGAGATTGAGGACTTCCATGCACGACGGGAGGGCATCCGCCAACAAATCCGCTTCCAGCCTTCTCTGCAGCCTGTGGCTAGTGAGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS CCA 90 bp GAGGGCTGCTTTGGTATTGTCGGAGATGGCACCCTCTCTTTTTGGTaGAGCAAGCTCACTGGCCGGCGGGGCAGGCTGCAGAGTCAGATC +
Preference number: 5 (lower is better)
Translates to: EGCFGIVGDGTLSFW*SKLTGRRGRLQSQI
Trigger: GATCTGACTCTGCAGCCTGCCCCGCCGGCCAGTGAGCTTGCTCCACCAAAAAGAGAGGGTGCCATCTCCGACAATACCAAAGCAGCCCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000108714.2
ENSMUST00000153441.2
CDS CCA 90 bp TTCCTCCAGATCAAAGCCAACTCCGTAGCCAGCCCCACTGCCCTTTaGAGTGCCAGAGAACACAGGAGGCAGGGGGTCCTCCACCTGAGA +
Preference number: 5 (lower is better)
Translates to: FLQIKANSVASPTAL*SAREHRRQGVLHLR
Trigger: TCTCAGGTGGAGGACCCCCTGCCTCCTGTGTTCTCTGGCACTCCAAAGGGCAGTGGGGCTGGCTACGGAGTTGGCTTTGATCTGGAGGAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CAA 90 bp GTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTGAAAGGTGGGTCGAAGGAGCGGGCTTaGAGCAGGGCCAGGTTCTTG +
Preference number: 5 (lower is better)
Translates to: VLLWLGGGSGGCLRLKGGSKERA*SRARFL
Trigger: CAAGAACCTGGCCCTGCTCAAAGCCCGCTCCTTCGA...CCCACCTTTCAGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079080.13
CDS-3UTR CAA 90 bp ACCTGCAGAGTAACTCAAGCCAAGCCTCACCTGCCAGGCCCAGGGTGCAGCCCTGCATTAGGTATCTTCTaGATGGCCACCTGCTGGCCC +
Preference number: 5 (lower is better)
Translates to: TCRVTQAKPHLPGPGCSPALGIF*MATCWP
Trigger: GGGCCAGCAGGTGGCCATCAAGAAGATACCTAATGC...AGGGCTGCACCCTGGGCCTGGCAGGTGAGGCTTGGCTTGAGTTACTCTGCAGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079080.13
CDS-3UTR CAA 90 bp GCCAGGCCCAGGGTGCAGCCCTTTGGATCGCACCCCTGGACCTTGATGCTGGGTAGGGTCCGTTTGGCATaGGTCACCACATCAAAAGCA +
Preference number: 5 (lower is better)
Translates to: ARPRVQPFGSHPWTLMLGRVRLA*VTTSKA
Trigger: TGCTTTTGATGTGGTGACCAATGCCAAACGGACCCT...ACCCAGCATCAAGGTCCAGGGGTGCGATCCAAAGGGCTGCACCCTGGGCCTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CAA 90 bp GCCAGGCCCAGGGTGCAGCCCTTTGGATCGCACCCCTGGACCTTGATGCTGGGTGGCTTCAGGATGTCCTaGATGGCGATGATATTGTCG +
Preference number: 5 (lower is better)
Translates to: ARPRVQPFGSHPWTLMLGGFRMS*MAMILS
Trigger: CGACAATATCATCGCCATCAAGGACATCCTGAAGCC...ACCCAGCATCAAGGTCCAGGGGTGCGATCCAAAGGGCTGCACCCTGGGCCTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CAA 90 bp ACCTGCAGAGTAACTCAAGCCAAGCCTCACCTGCCAGGCCCAGGGTGCAGCCCTAAGGCACAGGTTGCCTaGGTGGCAGGCTCTGGATAT +
Preference number: 5 (lower is better)
Translates to: TCRVTQAKPHLPGPGCSPKAQVA*VAGSGY
Trigger: ATATCCAGAGCCTGCCACCAAGGCAACCTGTGCCTT...AGGGCTGCACCCTGGGCCTGGCAGGTGAGGCTTGGCTTGAGTTACTCTGCAGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CAA 90 bp CTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTGAAACTGGAAGCGGATTTGTaGGCGGATGCCCTCCCGTCG +
Preference number: 5 (lower is better)
Translates to: LLVLLWLGGGSGGCLRLKLEADL*ADALPS
Trigger: CGACGGGAGGGCATCCGCCAACAAATCCGCTTCCAG...TTTCAGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CAA 90 bp TCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTGAAAGGCTGGAAGCGGATTaGTTGGCGGATGCCCTCCCG +
Preference number: 5 (lower is better)
Translates to: SPGPVMARWWLRWLLKAERLEAD*LADALP
Trigger: CGGGAGGGCATCCGCCAACAAATCCGCTTCCAGCCT...TTCAGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CAA 90 bp GAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTCAGCCCCACTGCCCTTaGGAGTGCCAGAGAACACAG +
Preference number: 5 (lower is better)
Translates to: ESPGPVMARWWLRWLLKAQPHCP*ECQRTQ
Trigger: CTGTGTTCTCTGGCACTCCAAAGGGCAGTGGGGCTG...AGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAGACTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS TCA 90 bp GTCATGGTACTTAGCCAGGAAGGGGTGGCGAAGGGCAGCAGCAGCTaGGATTCGGGCACTGGGTTCAAATCGCAACATGCGTCCCAGCAG +
Preference number: 5 (lower is better)
Translates to: VMVLSQEGVAKGSSS*DSGTGFKSQHASQQ
Trigger: CTGCTGGGACGCATGTTGCGATTTGAACCCAGTGCCCGAATCTCAGCTGCTGCTGCCCTTCGCCACCCCTTCCTGGCTAAGTACCATGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS GCA 90 bp CTGGGCATCTCAACATCTGGACACACAGGCTCACTAGCCACAGGCTaGAGAGAAGGCTGGAAGCGGATTTGTTGGCGGATGCCCTCCCGT +
Preference number: 5 (lower is better)
Translates to: LGISTSGHTGSLATG*REGWKRICWRMPSR
Trigger: ACGGGAGGGCATCCGCCAACAAATCCGCTTCCAGCCTTCTCTGCAGCCTGTGGCTAGTGAGCCTGTGTGTCCAGATGTTGAGATGCCCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
ENSMUST00000153441.2
CDS GCA 90 bp AGTCAGATCAACGGTGTCAGGTGCAGGATCAGAGCATGGTGGCAGTaGTGGAGGAGGCGACTCCATGGCACAGTCTCCACTTGGAGCCCA +
Preference number: 5 (lower is better)
Translates to: SQINGVRCRIRAWWQ*WRRRLHGTVSTWSP
Trigger: TGGGCTCCAAGTGGAGACTGTGCCATGGAGTCGCCTCCTCCAGCACTGCCACCATGCTCTGATCCTGCACCTGACACCGTTGATCTGACT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
ENSMUST00000153441.2
CDS CCA 90 bp ACATCTGGACACACAGGCTCACTAGCCACAGGCTGCAGAGAAGGCTaGAAGCGGATTTGTTGGCGGATGCCCTCCCGTCGTGCATGGAAG +
Preference number: 5 (lower is better)
Translates to: TSGHTGSLATGCREG*KRICWRMPSRRAWK
Trigger: CTTCCATGCACGACGGGAGGGCATCCGCCAACAAATCCGCTTCCAGCCTTCTCTGCAGCCTGTGGCTAGTGAGCCTGTGTGTCCAGATGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
ENSMUST00000153441.2
CDS CCA 90 bp TATTGTCGGAGATGGCACCCTCTCTTTTTGGTGGAGCAAGCTCACTaGCCGGCGGGGCAGGCTGCAGAGTCAGATCAACGGTGTCAGGTG +
Preference number: 5 (lower is better)
Translates to: YCRRWHPLFLVEQAH*PAGQAAESDQRCQV
Trigger: CACCTGACACCGTTGATCTGACTCTGCAGCCTGCCCCGCCGGCCAGTGAGCTTGCTCCACCAAAAAGAGAGGGTGCCATCTCCGACAATA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000108714.2
ENSMUST00000153441.2
CDS CCA 90 bp TTTGAGGGCTGCTTTGGTATTGTCGGAGATGGCACCCTCTCTTTTTaGTGGAGCAAGCTCACTGGCCGGCGGGGCAGGCTGCAGAGTCAG +
Preference number: 5 (lower is better)
Translates to: FEGCFGIVGDGTLSF*WSKLTGRRGRLQSQ
Trigger: CTGACTCTGCAGCCTGCCCCGCCGGCCAGTGAGCTTGCTCCACCAAAAAGAGAGGGTGCCATCTCCGACAATACCAAAGCAGCCCTCAAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000108714.2
ENSMUST00000153441.2
CDS-3UTR CAA 90 bp GCCAGGCCCAGGGTGCAGCCCTTTGGATCGCACCCCTGGACCTTGATGCTGGGTTCGTGTTTGAAGTGTTaGAGGATCTTCAGCTCCCTG +
Preference number: 5 (lower is better)
Translates to: ARPRVQPFGSHPWTLMLGSCLKC*RIFSSL
Trigger: CAGGGAGCTGAAGATCCTCAAACACTTCAAACACGA...ACCCAGCATCAAGGTCCAGGGGTGCGATCCAAAGGGCTGCACCCTGGGCCTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CAA 90 bp GGTGCAGCCCTTTGGATCGCACCCCTGGACCTTGATGCTGGGTCTATCCTGGCACAGACCAGAGGTCGATaGCCTGCGTATACTCGTGCA +
Preference number: 5 (lower is better)
Translates to: GAALWIAPLDLDAGSILAQTRGR*PAYTRA
Trigger: TGCACGAGTATACGCAGGCAATCGACCTCTGGTCTG...TGCCAGGATAGACCCAGCATCAAGGTCCAGGGGTGCGATCCAAAGGGCTGCACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CAA 90 bp GGTGCAGCCCTTTGGATCGCACCCCTGGACCTTGATGCTGGGTCTATCCTGGCAAGGGCTGCTTTGGTATaGTCGGAGATGGCACCCTCT +
Preference number: 5 (lower is better)
Translates to: GAALWIAPLDLDAGSILARAALV*SEMAPS
Trigger: AGAGGGTGCCATCTCCGACAATACCAAAGCAGCCCT...TGCCAGGATAGACCCAGCATCAAGGTCCAGGGGTGCGATCCAAAGGGCTGCACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079080.13
ENSMUST00000108714.2
CDS-3UTR CAA 90 bp GGTGCAGCCCTTTGGATCGCACCCCTGGACCTTGATGCTGGGTCTATCCTGGCAAGCAGGCTTCGGTCATaGTCACTGAGCACCAGTCCA +
Preference number: 5 (lower is better)
Translates to: GAALWIAPLDLDAGSILASRLRS*SLSTSP
Trigger: TGGACTGGTGCTCAGTGACAATGACCGAAGCCTGCT...TGCCAGGATAGACCCAGCATCAAGGTCCAGGGGTGCGATCCAAAGGGCTGCACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CAA 90 bp TCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTGAACAGCCCCACTGCCCTTaGGAGTGCCAGAGAACACAG +
Preference number: 5 (lower is better)
Translates to: SPGPVMARWWLRWLLKAEQPHCP*ECQRTQ
Trigger: CTGTGTTCTCTGGCACTCCAAAGGGCAGTGGGGCTG...TTCAGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS GCA 90 bp GGCAGGTCAGACAGCAGCATTGGGGAGTCCATCTGGATCTCACGCTaGAGAGACTCAATGTCAGCAGGGTTCATGCCATGGCCCTCAAGC +
Preference number: 5 (lower is better)
Translates to: GRSDSSIGESIWISR*RDSMSAGFMPWPSS
Trigger: GCTTGAGGGCCATGGCATGAACCCTGCTGACATTGAGTCTCTGCAGCGTGAGATCCAGATGGACTCCCCAATGCTGCTGTCTGACCTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS CCA 90 bp GAAGGCTGGAAGCGGATTTGTTGGCGGATGCCCTCCCGTCGTGCATaGAAGTCCTCAATCTCAGCCACAATGGCCTCCTTAATGCGCTCC +
Preference number: 5 (lower is better)
Translates to: EGWKRICWRMPSRRA*KSSISATMASLMRS
Trigger: GGAGCGCATTAAGGAGGCCATTGTGGCTGAGATTGAGGACTTCCATGCACGACGGGAGGGCATCCGCCAACAAATCCGCTTCCAGCCTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CAA 90 bp GAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTTCCCTGAGGGTCCGTTaGGCATTGGTCACCACATCA +
Preference number: 5 (lower is better)
Translates to: ESPGPVMARWWLRWLLKASLRVR*ALVTTS
Trigger: TGATGTGGTGACCAATGCCAAACGGACCCTCAGGGA...AGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAGACTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CAA 90 bp GAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGGCAGAGTGCATGTATTaGAGGCCCCGAAGCAGCTGG +
Preference number: 5 (lower is better)
Translates to: EDCSGRSRVSWSCYGSVVAECMY*RPRSSW
Trigger: CCAGCTGCTTCGGGGCCTCAAATACATGCACTCTGC...CACCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CAA 90 bp GAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTCAGACCAGAGGTCGATaGCCTGCGTATACTCGTGCA +
Preference number: 5 (lower is better)
Translates to: ESPGPVMARWWLRWLLKAQTRGR*PAYTRA
Trigger: TGCACGAGTATACGCAGGCAATCGACCTCTGGTCTG...AGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAGACTC
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CAA 90 bp GAGATGAACCTGCAGAGTAACTCAAGCCAAGCCTCACCTGCCAGGCCCAGGGTGAAGGCACAGGTTGCCTaGGTGGCAGGCTCTGGATAT +
Preference number: 5 (lower is better)
Translates to: EMNLQSNSSQASPARPRVKAQVA*VAGSGY
Trigger: ATATCCAGAGCCTGCCACCAAGGCAACCTGTGCCTT...CACCCTGGGCCTGGCAGGTGAGGCTTGGCTTGAGTTACTCTGCAGGTTCATCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CAA 90 bp GTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTGAAAGGTGGGAAGGCACAGGTTGCCTaGGTGGCAGGCTCTGGATAT +
Preference number: 5 (lower is better)
Translates to: VLLWLGGGSGGCLRLKGGKAQVA*VAGSGY
Trigger: ATATCCAGAGCCTGCCACCAAGGCAACCTGTGCCTT...CCCACCTTTCAGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CAA 90 bp GAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTGCATTAGGTATCTTCTaGATGGCCACCTGCTGGCCG +
Preference number: 5 (lower is better)
Translates to: ESPGPVMARWWLRWLLKAALGIF*MATCWP
Trigger: CGGCCAGCAGGTGGCCATCAAGAAGATACCTAATGC...AGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAGACTC
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108714.2
CDS GCA 90 bp CAGAGAAGGCTGGAAGCGGATTTGTTGGCGGATGCCCTCCCGTCGTaGATGGAAGTCCTCAATCTCAGCCACAATGGCCTCCTTAATGCG +
Preference number: 5 (lower is better)
Translates to: QRRLEADLLADALPS*MEVLNLSHNGLLNA
Trigger: CGCATTAAGGAGGCCATTGTGGCTGAGATTGAGGACTTCCATGCACGACGGGAGGGCATCCGCCAACAAATCCGCTTCCAGCCTTCTCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS GCA 90 bp TTAAGAATTCCTCCAGATCAAAGCCAACTCCGTAGCCAGCCCCACTaGCCTTTGGAGTGCCAGAGAACACAGGAGGCAGGGGGTCCTCCA +
Preference number: 5 (lower is better)
Translates to: LRIPPDQSQLRSQPH*PLECQRTQEAGGPP
Trigger: TGGAGGACCCCCTGCCTCCTGTGTTCTCTGGCACTCCAAAGGGCAGTGGGGCTGGCTACGGAGTTGGCTTTGATCTGGAGGAATTCTTAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS GCA 90 bp CCATCTGGATCTCACGCTGCAGAGACTCAATGTCAGCAGGGTTCATaGCATGGCCCTCAAGCCAGTCAGCAAGGAGAGAGGCTGAGAGTG +
Preference number: 5 (lower is better)
Translates to: PSGSHAAETQCQQGS*HGPQASQQGERLRV
Trigger: CACTCTCAGCCTCTCTCCTTGCTGACTGGCTTGAGGGCCATGGCATGAACCCTGCTGACATTGAGTCTCTGCAGCGTGAGATCCAGATGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS CCA 90 bp TGGATCTCACGCTGCAGAGACTCAATGTCAGCAGGGTTCATGCCATaGCCCTCAAGCCAGTCAGCAAGGAGAGAGGCTGAGAGTGAGGCT +
Preference number: 5 (lower is better)
Translates to: WISRCRDSMSAGFMP*PSSQSARREAESEA
Trigger: AGCCTCACTCTCAGCCTCTCTCCTTGCTGACTGGCTTGAGGGCCATGGCATGAACCCTGCTGACATTGAGTCTCTGCAGCGTGAGATCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CAA 90 bp TCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTGAATCCCTGAGGGTCCGTTaGGCATTGGTCACCACATCA +
Preference number: 5 (lower is better)
Translates to: SPGPVMARWWLRWLLKAESLRVR*ALVTTS
Trigger: TGATGTGGTGACCAATGCCAAACGGACCCTCAGGGA...TTCAGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CAA 90 bp ACCTGCAGAGTAACTCAAGCCAAGCCTCACCTGCCAGGCCCAGGGTGCAGCCCTCCAAAGTCACCGATCTaGAGCTCACAGTTCTCATTG +
Preference number: 5 (lower is better)
Translates to: TCRVTQAKPHLPGPGCSPPKSPI*SSQFSL
Trigger: CAATGAGAACTGTGAGCTCAAGATCGGTGACTTTGG...AGGGCTGCACCCTGGGCCTGGCAGGTGAGGCTTGGCTTGAGTTACTCTGCAGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CAA 90 bp GAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGCAGACCAGAGGTCGATaGCCTGCGTATACTCGTGCA +
Preference number: 5 (lower is better)
Translates to: EDCSGRSRVSWSCYGSVVQTRGR*PAYTRA
Trigger: TGCACGAGTATACGCAGGCAATCGACCTCTGGTCTG...CACCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CAA 90 bp GGCTGCTTAAGGCTGAAAGGTGGGTCTGAGATGAACCTGCAGAGTAACTCAAGCCTGGAAGCGGATTTGTaGGCGGATGCCCTCCCGTCG +
Preference number: 5 (lower is better)
Translates to: GCLRLKGGSEMNLQSNSSLEADL*ADALPS
Trigger: CGACGGGAGGGCATCCGCCAACAAATCCGCTTCCAG...GCTTGAGTTACTCTGCAGGTTCATCTCAGACCCACCTTTCAGCCTTAAGCAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CAA 90 bp GGCTGCTTAAGGCTGAAAGGTGGGTCTGAGATGAACCTGCAGAGTAACTCAAGCAGGCTGGAAGCGGATTaGTTGGCGGATGCCCTCCCG +
Preference number: 5 (lower is better)
Translates to: GCLRLKGGSEMNLQSNSSRLEAD*LADALP
Trigger: CGGGAGGGCATCCGCCAACAAATCCGCTTCCAGCCT...GCTTGAGTTACTCTGCAGGTTCATCTCAGACCCACCTTTCAGCCTTAAGCAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CAA 90 bp GAGAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTGGAGGGCTGCTTTGGTATaGTCGGAGATGGCACCCTCT +
Preference number: 5 (lower is better)
Translates to: EKTAQGGVESPGPVMARWRAALV*SEMAPS
Trigger: AGAGGGTGCCATCTCCGACAATACCAAAGCAGCCCT...CCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079080.13
ENSMUST00000108714.2
CDS-3UTR CAA 90 bp GAGAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTGGAGCAGGCTTCGGTCATaGTCACTGAGCACCAGTCCA +
Preference number: 5 (lower is better)
Translates to: EKTAQGGVESPGPVMARWSRLRS*SLSTSP
Trigger: TGGACTGGTGCTCAGTGACAATGACCGAAGCCTGCT...CCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CAA 90 bp TCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTGAAAGCAGGCTTCGGTCATaGTCACTGAGCACCAGTCCA +
Preference number: 5 (lower is better)
Translates to: SPGPVMARWWLRWLLKAESRLRS*SLSTSP
Trigger: TGGACTGGTGCTCAGTGACAATGACCGAAGCCTGCT...TTCAGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CAA 90 bp CTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTGAAAGGTCAGACAGCAGCATaGGGGAGTCCATCTGGATCT +
Preference number: 5 (lower is better)
Translates to: LLVLLWLGGGSGGCLRLKGQTAA*GSPSGS
Trigger: AGATCCAGATGGACTCCCCAATGCTGCTGTCTGACC...TTTCAGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CAA 90 bp TCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCATTAGGTATCTTCTaGATGGCCACCTGCTGGCCT +
Preference number: 5 (lower is better)
Translates to: SGRSRVSWSCYGSVVAQVALGIF*MATCWP
Trigger: AGGCCAGCAGGTGGCCATCAAGAAGATACCTAATGC...CACCTGAGCCACCACCGAGCCATAACAGGACCAGGAGACTCTACTCCTCCCTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101085.9
CDS-3UTR CAA 90 bp GTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTGAAAGGTGGGAGGGTCCGTTTGGCATaGGTCACCACATCAAAAGCA +
Preference number: 5 (lower is better)
Translates to: VLLWLGGGSGGCLRLKGGRVRLA*VTTSKA
Trigger: TGCTTTTGATGTGGTGACCAATGCCAAACGGACCCT...CCCACCTTTCAGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CAA 90 bp GCCAGGCCCAGGGTGCAGCCCTTTGGATCGCACCCCTGGACCTTGATGCTGGGTTTGATGGCGATGATATaGTCGTGTTTGAAGTGTTTG +
Preference number: 5 (lower is better)
Translates to: ARPRVQPFGSHPWTLMLGLMAMI*SCLKCL
Trigger: CAAACACTTCAAACACGACAATATCATCGCCATCAA...ACCCAGCATCAAGGTCCAGGGGTGCGATCCAAAGGGCTGCACCCTGGGCCTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CAA 90 bp GAGATGAACCTGCAGAGTAACTCAAGCCAAGCCTCACCTGCCAGGCCCAGGGTGGGCTTCAGGATGTCCTaGATGGCGATGATATTGTCG +
Preference number: 5 (lower is better)
Translates to: EMNLQSNSSQASPARPRVGFRMS*MAMILS
Trigger: CGACAATATCATCGCCATCAAGGACATCCTGAAGCC...CACCCTGGGCCTGGCAGGTGAGGCTTGGCTTGAGTTACTCTGCAGGTTCATCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CAA 90 bp GGTGCAGCCCTTTGGATCGCACCCCTGGACCTTGATGCTGGGTCTATCCTGGCAAGCTCACAGTTCTCATaGACCAGAAGGTTAGAGGGT +
Preference number: 5 (lower is better)
Translates to: GAALWIAPLDLDAGSILASSQFS*TRRLEG
Trigger: ACCCTCTAACCTTCTGGTCAATGAGAACTGTGAGCT...TGCCAGGATAGACCCAGCATCAAGGTCCAGGGGTGCGATCCAAAGGGCTGCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CAA 90 bp GGTGCAGCCCTTTGGATCGCACCCCTGGACCTTGATGCTGGGTCTATCCTGGCACCAAAGTCACCGATCTaGAGCTCACAGTTCTCATTG +
Preference number: 5 (lower is better)
Translates to: GAALWIAPLDLDAGSILAPKSPI*SSQFSL
Trigger: CAATGAGAACTGTGAGCTCAAGATCGGTGACTTTGG...TGCCAGGATAGACCCAGCATCAAGGTCCAGGGGTGCGATCCAAAGGGCTGCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CAA 90 bp ACAATACTGGAGAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGCTCCCAAGGCACAGGTaGCCTTGGTGGCAGGCTCTG +
Preference number: 5 (lower is better)
Translates to: TILEKTAQGGVESPGPVMLPRHR*PWWQAL
Trigger: CAGAGCCTGCCACCAAGGCAACCTGTGCCTTGGGAG...CATAACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTCTCCAGTATTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS CCA 90 bp GCGCTCCCTGGTAAGGGCTTCACGGTCAAAAGCAAAGTCAAAAGGTaGGGCGCAATCAGGCTCATCATCAGGGTCATGGTACTTAGCCAG +
Preference number: 5 (lower is better)
Translates to: ALPGKGFTVKSKVKR*GAIRLIIRVMVLSQ
Trigger: CTGGCTAAGTACCATGACCCTGATGATGAGCCTGATTGCGCCCCACCTTTTGACTTTGCTTTTGACCGTGAAGCCCTTACCAGGGAGCGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CAA 90 bp GAGATGAACCTGCAGAGTAACTCAAGCCAAGCCTCACCTGCCAGGCCCAGGGTGTCGTGTTTGAAGTGTTaGAGGATCTTCAGCTCCCTG +
Preference number: 5 (lower is better)
Translates to: EMNLQSNSSQASPARPRVSCLKC*RIFSSL
Trigger: CAGGGAGCTGAAGATCCTCAAACACTTCAAACACGA...CACCCTGGGCCTGGCAGGTGAGGCTTGGCTTGAGTTACTCTGCAGGTTCATCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CAA 90 bp TCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTGAAGGCTTCAGGATGTCCTaGATGGCGATGATATTGTCG +
Preference number: 5 (lower is better)
Translates to: SPGPVMARWWLRWLLKAEGFRMS*MAMILS
Trigger: CGACAATATCATCGCCATCAAGGACATCCTGAAGCC...TTCAGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAGA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CAA 90 bp GAGTCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTAGCTCACAGTTCTCATaGACCAGAAGGTTAGAGGGT +
Preference number: 5 (lower is better)
Translates to: ESPGPVMARWWLRWLLKASSQFS*TRRLEG
Trigger: ACCCTCTAACCTTCTGGTCAATGAGAACTGTGAGCT...AGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAGACTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CAA 90 bp ACAATACTGGAGAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGCAGCCCCACTGCCCTTaGGAGTGCCAGAGAACACAG +
Preference number: 5 (lower is better)
Translates to: TILEKTAQGGVESPGPVMQPHCP*ECQRTQ
Trigger: CTGTGTTCTCTGGCACTCCAAAGGGCAGTGGGGCTG...CATAACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTCTCCAGTATTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CAA 90 bp GGTGGGTCTGAGATGAACCTGCAGAGTAACTCAAGCCAAGCCTCACCTGCCAGGTCGTGTTTGAAGTGTTaGAGGATCTTCAGCTCCCTG +
Preference number: 5 (lower is better)
Translates to: GGSEMNLQSNSSQASPARSCLKC*RIFSSL
Trigger: CAGGGAGCTGAAGATCCTCAAACACTTCAAACACGA...CCTGGCAGGTGAGGCTTGGCTTGAGTTACTCTGCAGGTTCATCTCAGACCCACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CAA 90 bp ACAATACTGGAGAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGGCAGAGTGCATGTATTaGAGGCCCCGAAGCAGCTGG +
Preference number: 5 (lower is better)
Translates to: TILEKTAQGGVESPGPVMAECMY*RPRSSW
Trigger: CCAGCTGCTTCGGGGCCTCAAATACATGCACTCTGC...CATAACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTCTCCAGTATTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CAA 90 bp AATACAATACTGGAGAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTCTGCTCCTTAGGGACTaGAGCAGGGCAGCTTTGAGG +
Preference number: 5 (lower is better)
Translates to: NTILEKTAQGGVESPGPVLLLRD*SRAALR
Trigger: CCTCAAAGCTGCCCTGCTCAAGTCCCTAAGGAGCAG...AACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTCTCCAGTATTGTATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079080.13
ENSMUST00000108714.2
CDS TCA 90 bp TACAGGAAGTATCTCACATGTTCCAGGGTGAGCGGCTGTGAAGAGTaGATGATCTGGTGTAGGTCGCTCTCCATGAGGTCCAGTACCACA +
Preference number: 5 (lower is better)
Translates to: YRKYLTCSRVSGCEE*MIWCRSLSMRSSTT
Trigger: TGTGGTACTGGACCTCATGGAGAGCGACCTACACCAGATCATTCACTCTTCACAGCCGCTCACCCTGGAACATGTGAGATACTTCCTGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CAA 90 bp AATACAATACTGGAGAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTGGTCAGACAGCAGCATaGGGGAGTCCATCTGGATCT +
Preference number: 5 (lower is better)
Translates to: NTILEKTAQGGVESPGPVGQTAA*GSPSGS
Trigger: AGATCCAGATGGACTCCCCAATGCTGCTGTCTGACC...AACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTCTCCAGTATTGTATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CAA 90 bp TCTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTGAATTGATGGCGATGATATaGTCGTGTTTGAAGTGTTTG +
Preference number: 5 (lower is better)
Translates to: SPGPVMARWWLRWLLKAELMAMI*SCLKCL
Trigger: CAAACACTTCAAACACGACAATATCATCGCCATCAA...TTCAGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CAA 90 bp CTCCTGGTCCTGTTATGGCTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTGAAATTGATGGCGATGATATaGTCGTGTTTGAAGTGTTTG +
Preference number: 5 (lower is better)
Translates to: LLVLLWLGGGSGGCLRLKLMAMI*SCLKCL
Trigger: CAAACACTTCAAACACGACAATATCATCGCCATCAA...TTTCAGCCTTAAGCAGCCACCTGAGCCACCACCGAGCCATAACAGGACCAGGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS-3UTR CAA 90 bp AATACAATACTGGAGAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTAGCTCACAGTTCTCATaGACCAGAAGGTTAGAGGGT +
Preference number: 5 (lower is better)
Translates to: NTILEKTAQGGVESPGPVSSQFS*TRRLEG
Trigger: ACCCTCTAACCTTCTGGTCAATGAGAACTGTGAGCT...AACAGGACCAGGAGACTCTACTCCTCCCTGAGCAGTCTTCTCCAGTATTGTATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS TCA 72 bp AGGGCCAGGTTCTTGGCCACCACAGAGGCAGCGGTGTaGACGGGTTCTGCCTTCACCCTCCCAGGGGGCTCC +
Preference number: 6 (lower is better)
Translates to: RARFLATTEAAV*TGSAFTLPGGS
Trigger: GGAGCCCCCTGGGAGGGTGAAGGCAGAACCCGTTCACACCGCTGCCTCTGTGGTGGCCAAGAACCTGGCCCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000079080.13
CDS GCA 72 bp CTTGGCCACCACAGAGGCAGCGGTGTGAACGGGTTCTaGCTTCACCCTCCCAGGGGGCTCCCCAGAGCCATC +
Preference number: 6 (lower is better)
Translates to: LGHHRGSGVNGF*LHPPRGLPRAI
Trigger: GATGGCTCTGGGGAGCCCCCTGGGAGGGTGAAGGCAGAACCCGTTCACACCGCTGCCTCTGTGGTGGCCAAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000079080.13
CDS CCA 72 bp GCGTCCCAGCAGGGAGAGGGCCTGGCGGTCAGCACCTaGGTATACTGTCTCCCAAGGCACAGGTTGCCTTGG +
Preference number: 6 (lower is better)
Translates to: ASQQGEGLAVST*VYCLPRHRLPW
Trigger: CCAAGGCAACCTGTGCCTTGGGAGACAGTATACCCAGGTGCTGACCGCCAGGCCCTCTCCCTGCTGGGACGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS TCA 72 bp CCCCCACGTCAAAGGTCACGTCGAAGGAGCGGGCTTTaGGCAGGGCCAGGTTCTTGGCCACCACAGAGGCAG +
Preference number: 6 (lower is better)
Translates to: PPRQRSRRRSGL*AGPGSWPPQRQ
Trigger: CTGCCTCTGTGGTGGCCAAGAACCTGGCCCTGCTCAAAGCCCGCTCCTTCGACGTGACCTTTGACGTGGGGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000079080.13
CDS TCA 72 bp CTCCTGCGCTTCTCTTCTCGTTCTCGCTGGCGTTCCTaGGCTGTCACGGGCTTTCGAGGCTCAGGCGCCTCC +
Preference number: 6 (lower is better)
Translates to: LLRFSSRSRWRS*AVTGFRGSGAS
Trigger: GGAGGCGCCTGAGCCTCGAAAGCCCGTGACAGCTCAGGAACGCCAGCGAGAACGAGAAGAGAAGCGCAGGAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
ENSMUST00000153441.2
CDS CAA 72 bp TCCCCCACGTCAAAGGTCACGTCGAAGGAGCGGGCTTaGAGCAGGGCCAGGTTCTTGGCCACCACAGAGGCA +
Preference number: 6 (lower is better)
Translates to: SPTSKVTSKERA*SRARFLATTEA
Trigger: TGCCTCTGTGGTGGCCAAGAACCTGGCCCTGCTCAAAGCCCGCTCCTTCGACGTGACCTTTGACGTGGGGGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000079080.13
CDS CAA 90 bp GGCGGTCAGCACCTGGGTATACTGTCTCCCAAGGCACAGGTTGCCTaGGTGGCAGGCTCTGGATATAGGCTCGCACCCTTTCAGCCCCCA +
Preference number: 6 (lower is better)
Translates to: GGQHLGILSPKAQVA*VAGSGYRLAPFQPP
Trigger: TGGGGGCTGAAAGGGTGCGAGCCTATATCCAGAGCCTGCCACCAAGGCAACCTGTGCCTTGGGAGACAGTATACCCAGGTGCTGACCGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS CAA 90 bp GGCCTGGCGGTCAGCACCTGGGTATACTGTCTCCCAAGGCACAGGTaGCCTTGGTGGCAGGCTCTGGATATAGGCTCGCACCCTTTCAGC +
Preference number: 6 (lower is better)
Translates to: GLAVSTWVYCLPRHR*PWWQALDIGSHPFS
Trigger: GCTGAAAGGGTGCGAGCCTATATCCAGAGCCTGCCACCAAGGCAACCTGTGCCTTGGGAGACAGTATACCCAGGTGCTGACCGCCAGGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS GCA 72 bp CCCACAGACCAGAGGTCGATTGCCTGCGTATACTCGTaGAGGGAAAGCATGAGCTCCGGGGCACGGTACCAG +
Preference number: 6 (lower is better)
Translates to: PTDQRSIACVYS*RESMSSGARYQ
Trigger: CTGGTACCGTGCCCCGGAGCTCATGCTTTCCCTGCACGAGTATACGCAGGCAATCGACCTCTGGTCTGTGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS GCA 72 bp CCTCCAGATCAAAGCCAACTCCGTAGCCAGCCCCACTaGCCTTTGGAGTGCCAGAGAACACAGGAGGCAGGG +
Preference number: 6 (lower is better)
Translates to: PPDQSQLRSQPH*PLECQRTQEAG
Trigger: CCCTGCCTCCTGTGTTCTCTGGCACTCCAAAGGGCAGTGGGGCTGGCTACGGAGTTGGCTTTGATCTGGAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS CCA 72 bp TCAAATCGCAACATGCGTCCCAGCAGGGAGAGGGCCTaGCGGTCAGCACCTGGGTATACTGTCTCCCAAGGC +
Preference number: 6 (lower is better)
Translates to: SNRNMRPSRERA*RSAPGYTVSQG
Trigger: GCCTTGGGAGACAGTATACCCAGGTGCTGACCGCCAGGCCCTCTCCCTGCTGGGACGCATGTTGCGATTTGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS CCA 72 bp GGTGGCGAAGGGCAGCAGCAGCTGAGATTCGGGCACTaGGTTCAAATCGCAACATGCGTCCCAGCAGGGAGA +
Preference number: 6 (lower is better)
Translates to: GGEGQQQLRFGH*VQIATCVPAGR
Trigger: TCTCCCTGCTGGGACGCATGTTGCGATTTGAACCCAGTGCCCGAATCTCAGCTGCTGCTGCCCTTCGCCACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS CCA 72 bp CACACAGGCTCACTAGCCACAGGCTGCAGAGAAGGCTaGAAGCGGATTTGTTGGCGGATGCCCTCCCGTCGT +
Preference number: 6 (lower is better)
Translates to: HTGSLATGCREG*KRICWRMPSRR
Trigger: ACGACGGGAGGGCATCCGCCAACAAATCCGCTTCCAGCCTTCTCTGCAGCCTGTGGCTAGTGAGCCTGTGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
ENSMUST00000153441.2
CDS CCA 72 bp AGATGGCACCCTCTCTTTTTGGTGGAGCAAGCTCACTaGCCGGCGGGGCAGGCTGCAGAGTCAGATCAACGG +
Preference number: 6 (lower is better)
Translates to: RWHPLFLVEQAH*PAGQAAESDQR
Trigger: CCGTTGATCTGACTCTGCAGCCTGCCCCGCCGGCCAGTGAGCTTGCTCCACCAAAAAGAGAGGGTGCCATCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000108714.2
ENSMUST00000153441.2
CDS CCA 72 bp AGGGGTGAGCCCAGGATCTGGAGGTGGTGGGCCAGATaGGAAGTAAGGCAGAACTTCTGGGGCACCAGAACC +
Preference number: 6 (lower is better)
Translates to: RGEPRIWRWWAR*EVRQNFWGTRT
Trigger: GGTTCTGGTGCCCCAGAAGTTCTGCCTTACTTCCCATCTGGCCCACCACCTCCAGATCCTGGGCTCACCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS CAA 72 bp GTGCTGGAGGAGGCGACTCCATGGCACAGTCTCCACTaGGAGCCCAGGGACTGGGCATCTCAACATCTGGAC +
Preference number: 6 (lower is better)
Translates to: VLEEATPWHSLH*EPRDWASQHLD
Trigger: GTCCAGATGTTGAGATGCCCAGTCCCTGGGCTCCAAGTGGAGACTGTGCCATGGAGTCGCCTCCTCCAGCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
ENSMUST00000153441.2
CDS CAA 90 bp ATTCCTCCAGATCAAAGCCAACTCCGTAGCCAGCCCCACTGCCCTTaGGAGTGCCAGAGAACACAGGAGGCAGGGGGTCCTCCACCTGAG +
Preference number: 6 (lower is better)
Translates to: IPPDQSQLRSQPHCP*ECQRTQEAGGPPPE
Trigger: CTCAGGTGGAGGACCCCCTGCCTCCTGTGTTCTCTGGCACTCCAAAGGGCAGTGGGGCTGGCTACGGAGTTGGCTTTGATCTGGAGGAAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS TCA 72 bp CTTAGCCAGGAAGGGGTGGCGAAGGGCAGCAGCAGCTaGGATTCGGGCACTGGGTTCAAATCGCAACATGCG +
Preference number: 6 (lower is better)
Translates to: LSQEGVAKGSSS*DSGTGFKSQHA
Trigger: CGCATGTTGCGATTTGAACCCAGTGCCCGAATCTCAGCTGCTGCTGCCCTTCGCCACCCCTTCCTGGCTAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS TCA 72 bp GGCACCAGAACCAGGCAACCCACTAGGTGGCACAAGTaGCTGGGAGGCCAAAAGGCTAGTGGAAGGGGCAGT +
Preference number: 6 (lower is better)
Translates to: GTRTRQPTRWHK*LGGQKASGRGS
Trigger: ACTGCCCCTTCCACTAGCCTTTTGGCCTCCCAGTCACTTGTGCCACCTAGTGGGTTGCCTGGTTCTGGTGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS GCA 72 bp AACGGTGTCAGGTGCAGGATCAGAGCATGGTGGCAGTaGTGGAGGAGGCGACTCCATGGCACAGTCTCCACT +
Preference number: 6 (lower is better)
Translates to: NGVRCRIRAWWQ*WRRRLHGTVST
Trigger: AGTGGAGACTGTGCCATGGAGTCGCCTCCTCCAGCACTGCCACCATGCTCTGATCCTGCACCTGACACCGTT
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
ENSMUST00000153441.2
CDS CCA 72 bp TGCTGGAGGAGGCGACTCCATGGCACAGTCTCCACTTaGAGCCCAGGGACTGGGCATCTCAACATCTGGACA +
Preference number: 6 (lower is better)
Translates to: CWRRRLHGTVST*SPGTGHLNIWT
Trigger: TGTCCAGATGTTGAGATGCCCAGTCCCTGGGCTCCAAGTGGAGACTGTGCCATGGAGTCGCCTCCTCCAGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
ENSMUST00000153441.2
CDS CCA 72 bp CAGATCAACGGTGTCAGGTGCAGGATCAGAGCATGGTaGCAGTGCTGGAGGAGGCGACTCCATGGCACAGTC +
Preference number: 6 (lower is better)
Translates to: QINGVRCRIRAW*QCWRRRLHGTV
Trigger: GACTGTGCCATGGAGTCGCCTCCTCCAGCACTGCCACCATGCTCTGATCCTGCACCTGACACCGTTGATCTG
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
ENSMUST00000153441.2
CDS CCA 72 bp TTTGGTATTGTCGGAGATGGCACCCTCTCTTTTTGGTaGAGCAAGCTCACTGGCCGGCGGGGCAGGCTGCAG +
Preference number: 6 (lower is better)
Translates to: FGIVGDGTLSFW*SKLTGRRGRLQ
Trigger: CTGCAGCCTGCCCCGCCGGCCAGTGAGCTTGCTCCACCAAAAAGAGAGGGTGCCATCTCCGACAATACCAAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000108714.2
ENSMUST00000153441.2
CDS CCA 72 bp TGCTTTGGTATTGTCGGAGATGGCACCCTCTCTTTTTaGTGGAGCAAGCTCACTGGCCGGCGGGGCAGGCTG +
Preference number: 6 (lower is better)
Translates to: CFGIVGDGTLSF*WSKLTGRRGRL
Trigger: CAGCCTGCCCCGCCGGCCAGTGAGCTTGCTCCACCAAAAAGAGAGGGTGCCATCTCCGACAATACCAAAGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000108714.2
ENSMUST00000153441.2
CDS CCA 72 bp CCAGAACCAGGCAACCCACTAGGTGGCACAAGTGACTaGGAGGCCAAAAGGCTAGTGGAAGGGGCAGTCTGG +
Preference number: 6 (lower is better)
Translates to: PEPGNPLGGTSD*EAKRLVEGAVW
Trigger: CCAGACTGCCCCTTCCACTAGCCTTTTGGCCTCCCAGTCACTTGTGCCACCTAGTGGGTTGCCTGGTTCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS CCA 72 bp AGGTGGTGGGCCAGATGGGAAGTAAGGCAGAACTTCTaGGGCACCAGAACCAGGCAACCCACTAGGTGGCAC +
Preference number: 6 (lower is better)
Translates to: RWWARWEVRQNF*GTRTRQPTRWH
Trigger: GTGCCACCTAGTGGGTTGCCTGGTTCTGGTGCCCCAGAAGTTCTGCCTTACTTCCCATCTGGCCCACCACCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS CCA 72 bp GGGCTCTTGGAGGTCAGGCAGGTCAGACAGCAGCATTaGGGAGTCCATCTGGATCTCACGCTGCAGAGACTC +
Preference number: 6 (lower is better)
Translates to: GLLEVRQVRQQH*GVHLDLTLQRL
Trigger: GAGTCTCTGCAGCGTGAGATCCAGATGGACTCCCCAATGCTGCTGTCTGACCTGCCTGACCTCCAAGAGCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS CAA 72 bp ACTAGCCACAGGCTGCAGAGAAGGCTGGAAGCGGATTaGTTGGCGGATGCCCTCCCGTCGTGCATGGAAGTC +
Preference number: 6 (lower is better)
Translates to: TSHRLQRRLEAD*LADALPSCMEV
Trigger: GACTTCCATGCACGACGGGAGGGCATCCGCCAACAAATCCGCTTCCAGCCTTCTCTGCAGCCTGTGGCTAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
ENSMUST00000153441.2
CDS CAA 72 bp CTGCTTTGGTATTGTCGGAGATGGCACCCTCTCTTTTaGGTGGAGCAAGCTCACTGGCCGGCGGGGCAGGCT +
Preference number: 6 (lower is better)
Translates to: LLWYCRRWHPLF*VEQAHWPAGQA
Trigger: AGCCTGCCCCGCCGGCCAGTGAGCTTGCTCCACCAAAAAGAGAGGGTGCCATCTCCGACAATACCAAAGCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000108714.2
ENSMUST00000153441.2
CDS CAA 90 bp GTCCGTTTGGCATTGGTCACCACATCAAAAGCATTAGGTATCTTCTaGATGGCCACCTGCTGGCCCGTGAGGCGGCGGCGCGCCGAAGAC +
Preference number: 6 (lower is better)
Translates to: VRLALVTTSKALGIF*MATCWPVRRRRAED
Trigger: GTCTTCGGCGCGCCGCCGCCTCACGGGCCAGCAGGTGGCCATCAAGAAGATACCTAATGCTTTTGATGTGGTGACCAATGCCAAACGGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079080.13
CDS CAA 90 bp AGGCTCACTAGCCACAGGCTGCAGAGAAGGCTGGAAGCGGATTTGTaGGCGGATGCCCTCCCGTCGTGCATGGAAGTCCTCAATCTCAGC +
Preference number: 6 (lower is better)
Translates to: RLTSHRLQRRLEADL*ADALPSCMEVLNLS
Trigger: GCTGAGATTGAGGACTTCCATGCACGACGGGAGGGCATCCGCCAACAAATCCGCTTCCAGCCTTCTCTGCAGCCTGTGGCTAGTGAGCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
ENSMUST00000153441.2
CDS CAA 90 bp CACAGGCTCACTAGCCACAGGCTGCAGAGAAGGCTGGAAGCGGATTaGTTGGCGGATGCCCTCCCGTCGTGCATGGAAGTCCTCAATCTC +
Preference number: 6 (lower is better)
Translates to: HRLTSHRLQRRLEAD*LADALPSCMEVLNL
Trigger: GAGATTGAGGACTTCCATGCACGACGGGAGGGCATCCGCCAACAAATCCGCTTCCAGCCTTCTCTGCAGCCTGTGGCTAGTGAGCCTGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
ENSMUST00000153441.2
CDS CAA 90 bp TCCAAGGGTGCACTGGGCCCATCTCTGAGCCTGCTCCTTAGGGACTaGAGCAGGGCAGCTTTGAGGGCTGCTTTGGTATTGTCGGAGATG +
Preference number: 6 (lower is better)
Translates to: SKGALGPSLSLLLRD*SRAALRAALVLSEM
Trigger: CATCTCCGACAATACCAAAGCAGCCCTCAAAGCTGCCCTGCTCAAGTCCCTAAGGAGCAGGCTCAGAGATGGGCCCAGTGCACCCTTGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000108714.2
ENSMUST00000153441.2
CDS TCA 72 bp ACCAGGTTGACATCAGGTGACTCTGATGTAGAAGGCTaGGGGGTGAGCCCAGGATCTGGAGGTGGTGGGCCA +
Preference number: 6 (lower is better)
Translates to: TRLTSGDSDVEG*GVSPGSGGGGP
Trigger: TGGCCCACCACCTCCAGATCCTGGGCTCACCCCTCAGCCTTCTACATCAGAGTCACCTGATGTCAACCTGGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS GCA 72 bp CTGGAAGCGGATTTGTTGGCGGATGCCCTCCCGTCGTaGATGGAAGTCCTCAATCTCAGCCACAATGGCCTC +
Preference number: 6 (lower is better)
Translates to: LEADLLADALPS*MEVLNLSHNGL
Trigger: GAGGCCATTGTGGCTGAGATTGAGGACTTCCATGCACGACGGGAGGGCATCCGCCAACAAATCCGCTTCCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS GCA 72 bp GCTGCAGAGAAGGCTGGAAGCGGATTTGTTGGCGGATaGCCTCCCGTCGTGCATGGAAGTCCTCAATCTCAG +
Preference number: 6 (lower is better)
Translates to: AAEKAGSGFVGG*PPVVHGSPQSQ
Trigger: CTGAGATTGAGGACTTCCATGCACGACGGGAGGGCATCCGCCAACAAATCCGCTTCCAGCCTTCTCTGCAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
ENSMUST00000153441.2
CDS CCA 72 bp AAAGGTGGGGCGCAATCAGGCTCATCATCAGGGTCATaGTACTTAGCCAGGAAGGGGTGGCGAAGGGCAGCA +
Preference number: 6 (lower is better)
Translates to: KGGAQSGSSSGS*YLARKGWRRAA
Trigger: TGCTGCCCTTCGCCACCCCTTCCTGGCTAAGTACCATGACCCTGATGATGAGCCTGATTGCGCCCCACCTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS CCA 72 bp AGTCAGATCAACGGTGTCAGGTGCAGGATCAGAGCATaGTGGCAGTGCTGGAGGAGGCGACTCCATGGCACA +
Preference number: 6 (lower is better)
Translates to: SQINGVRCRIRA*WQCWRRRLHGT
Trigger: TGTGCCATGGAGTCGCCTCCTCCAGCACTGCCACCATGCTCTGATCCTGCACCTGACACCGTTGATCTGACT
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
ENSMUST00000153441.2
CDS CCA 72 bp CGCTGCAGAGACTCAATGTCAGCAGGGTTCATGCCATaGCCCTCAAGCCAGTCAGCAAGGAGAGAGGCTGAG +
Preference number: 6 (lower is better)
Translates to: RCRDSMSAGFMP*PSSQSARREAE
Trigger: CTCAGCCTCTCTCCTTGCTGACTGGCTTGAGGGCCATGGCATGAACCCTGCTGACATTGAGTCTCTGCAGCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS CAA 72 bp GCATTGGTCACCACATCAAAAGCATTAGGTATCTTCTaGATGGCCACCTGCTGGCCCGTGAGGCGGCGGCGC +
Preference number: 6 (lower is better)
Translates to: ALVTTSKALGIF*MATCWPVRRRR
Trigger: GCGCCGCCGCCTCACGGGCCAGCAGGTGGCCATCAAGAAGATACCTAATGCTTTTGATGTGGTGACCAATGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079080.13
CDS CAA 72 bp GCACTGGGCCCATCTCTGAGCCTGCTCCTTAGGGACTaGAGCAGGGCAGCTTTGAGGGCTGCTTTGGTATTG +
Preference number: 6 (lower is better)
Translates to: ALGPSLSLLLRD*SRAALRAALVL
Trigger: CAATACCAAAGCAGCCCTCAAAGCTGCCCTGCTCAAGTCCCTAAGGAGCAGGCTCAGAGATGGGCCCAGTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000108714.2
ENSMUST00000153441.2
CDS CCA 72 bp TGGGTATACTGTCTCCCAAGGCACAGGTTGCCTTGGTaGCAGGCTCTGGATATAGGCTCGCACCCTTTCAGC +
Preference number: 6 (lower is better)
Translates to: WVYCLPRHRLPW*QALDIGSHPFS
Trigger: GCTGAAAGGGTGCGAGCCTATATCCAGAGCCTGCCACCAAGGCAACCTGTGCCTTGGGAGACAGTATACCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS CCA 72 bp ACCTGGGTATACTGTCTCCCAAGGCACAGGTTGCCTTaGTGGCAGGCTCTGGATATAGGCTCGCACCCTTTC +
Preference number: 6 (lower is better)
Translates to: TWVYCLPRHRLP*WQALDIGSHPF
Trigger: GAAAGGGTGCGAGCCTATATCCAGAGCCTGCCACCAAGGCAACCTGTGCCTTGGGAGACAGTATACCCAGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS CAA 72 bp CACCTGGGTATACTGTCTCCCAAGGCACAGGTTGCCTaGGTGGCAGGCTCTGGATATAGGCTCGCACCCTTT +
Preference number: 6 (lower is better)
Translates to: HLGILSPKAQVA*VAGSGYRLAPF
Trigger: AAAGGGTGCGAGCCTATATCCAGAGCCTGCCACCAAGGCAACCTGTGCCTTGGGAGACAGTATACCCAGGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS CAA 90 bp AGCCTGCTCCTTAGGGACTTGAGCAGGGCAGCTTTGAGGGCTGCTTaGGTATTGTCGGAGATGGCACCCTCTCTTTTTGGTGGAGCAAGC +
Preference number: 6 (lower is better)
Translates to: SLLLRDLSRAALRAA*VLSEMAPSLFGGAS
Trigger: GCTTGCTCCACCAAAAAGAGAGGGTGCCATCTCCGACAATACCAAAGCAGCCCTCAAAGCTGCCCTGCTCAAGTCCCTAAGGAGCAGGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000108714.2
ENSMUST00000153441.2
CDS CAA 90 bp GGCCCATCTCTGAGCCTGCTCCTTAGGGACTTGAGCAGGGCAGCTTaGAGGGCTGCTTTGGTATTGTCGGAGATGGCACCCTCTCTTTTT +
Preference number: 6 (lower is better)
Translates to: GPSLSLLLRDLSRAA*RAALVLSEMAPSLF
Trigger: AAAAAGAGAGGGTGCCATCTCCGACAATACCAAAGCAGCCCTCAAAGCTGCCCTGCTCAAGTCCCTAAGGAGCAGGCTCAGAGATGGGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000108714.2
ENSMUST00000153441.2
CDS GCA 72 bp GACAGCAGCATTGGGGAGTCCATCTGGATCTCACGCTaGAGAGACTCAATGTCAGCAGGGTTCATGCCATGG +
Preference number: 6 (lower is better)
Translates to: DSSIGESIWISR*RDSMSAGFMPW
Trigger: CCATGGCATGAACCCTGCTGACATTGAGTCTCTGCAGCGTGAGATCCAGATGGACTCCCCAATGCTGCTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS CCA 72 bp AAGCGGATTTGTTGGCGGATGCCCTCCCGTCGTGCATaGAAGTCCTCAATCTCAGCCACAATGGCCTCCTTA +
Preference number: 6 (lower is better)
Translates to: KRICWRMPSRRA*KSSISATMASL
Trigger: TAAGGAGGCCATTGTGGCTGAGATTGAGGACTTCCATGCACGACGGGAGGGCATCCGCCAACAAATCCGCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS CAA 90 bp CTCCTTAGGGACTTGAGCAGGGCAGCTTTGAGGGCTGCTTTGGTATaGTCGGAGATGGCACCCTCTCTTTTTGGTGGAGCAAGCTCACTG +
Preference number: 6 (lower is better)
Translates to: LLRDLSRAALRAALV*SEMAPSLFGGASSL
Trigger: CAGTGAGCTTGCTCCACCAAAAAGAGAGGGTGCCATCTCCGACAATACCAAAGCAGCCCTCAAAGCTGCCCTGCTCAAGTCCCTAAGGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000108714.2
ENSMUST00000153441.2
CDS CAA 72 bp CTTAGGGACTTGAGCAGGGCAGCTTTGAGGGCTGCTTaGGTATTGTCGGAGATGGCACCCTCTCTTTTTGGT +
Preference number: 6 (lower is better)
Translates to: LRDLSRAALRAA*VLSEMAPSLFG
Trigger: ACCAAAAAGAGAGGGTGCCATCTCCGACAATACCAAAGCAGCCCTCAAAGCTGCCCTGCTCAAGTCCCTAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000108714.2
ENSMUST00000153441.2
CDS CAA 90 bp GCAGGGGAAGTACAGAGGCCACGGGCCATTCCAAAGTCACCGATCTaGAGCTCACAGTTCTCATTGACCAGAAGGTTAGAGGGTTTAAGA +
Preference number: 6 (lower is better)
Translates to: AGEVQRPRAIPKSPI*SSQFSLTRRLEGLR
Trigger: TCTTAAACCCTCTAACCTTCTGGTCAATGAGAACTGTGAGCTCAAGATCGGTGACTTTGGAATGGCCCGTGGCCTCTGTACTTCCCCTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS CCA 72 bp GGTAAGGGCTTCACGGTCAAAAGCAAAGTCAAAAGGTaGGGCGCAATCAGGCTCATCATCAGGGTCATGGTA +
Preference number: 6 (lower is better)
Translates to: GKGFTVKSKVKR*GAIRLIIRVMV
Trigger: TACCATGACCCTGATGATGAGCCTGATTGCGCCCCACCTTTTGACTTTGCTTTTGACCGTGAAGCCCTTACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS CAA 72 bp GTACAGAGGCCACGGGCCATTCCAAAGTCACCGATCTaGAGCTCACAGTTCTCATTGACCAGAAGGTTAGAG +
Preference number: 6 (lower is better)
Translates to: VQRPRAIPKSPI*SSQFSLTRRLE
Trigger: CTCTAACCTTCTGGTCAATGAGAACTGTGAGCTCAAGATCGGTGACTTTGGAATGGCCCGTGGCCTCTGTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS CAA 72 bp GCATTGGTCACCACATCAAAAGCATTAGGTATCTTCTaGATGGCCACCTGCTGGCCGCCTCTGGAAAGCAGT +
Preference number: 6 (lower is better)
Translates to: ALVTTSKALGIF*MATCWPPLESS
Trigger: ACTGCTTTCCAGAGGCGGCCAGCAGGTGGCCATCAAGAAGATACCTAATGCTTTTGATGTGGTGACCAATGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108714.2
CDS CAA 90 bp TTCAGGATGTCCTTGATGGCGATGATATTGTCGTGTTTGAAGTGTTaGAGGATCTTCAGCTCCCTGAGGGTCCGTTTGGCATTGGTCACC +
Preference number: 6 (lower is better)
Translates to: FRMSLMAMILSCLKC*RIFSSLRVRLALVT
Trigger: GGTGACCAATGCCAAACGGACCCTCAGGGAGCTGAAGATCCTCAAACACTTCAAACACGACAATATCATCGCCATCAAGGACATCCTGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS CAA 90 bp ACAGTAGGCTTCAGGATGTCCTTGATGGCGATGATATTGTCGTGTTaGAAGTGTTTGAGGATCTTCAGCTCCCTGAGGGTCCGTTTGGCA +
Preference number: 6 (lower is better)
Translates to: TVGFRMSLMAMILSC*KCLRIFSSLRVRLA
Trigger: TGCCAAACGGACCCTCAGGGAGCTGAAGATCCTCAAACACTTCAAACACGACAATATCATCGCCATCAAGGACATCCTGAAGCCTACTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS CAA 72 bp TCCTTGATGGCGATGATATTGTCGTGTTTGAAGTGTTaGAGGATCTTCAGCTCCCTGAGGGTCCGTTTGGCA +
Preference number: 6 (lower is better)
Translates to: SLMAMILSCLKC*RIFSSLRVRLA
Trigger: TGCCAAACGGACCCTCAGGGAGCTGAAGATCCTCAAACACTTCAAACACGACAATATCATCGCCATCAAGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS CAA 90 bp TTGAAGTGTTTGAGGATCTTCAGCTCCCTGAGGGTCCGTTTGGCATaGGTCACCACATCAAAAGCATTAGGTATCTTCTTGATGGCCACC +
Preference number: 6 (lower is better)
Translates to: LKCLRIFSSLRVRLA*VTTSKALGIFLMAT
Trigger: GGTGGCCATCAAGAAGATACCTAATGCTTTTGATGTGGTGACCAATGCCAAACGGACCCTCAGGGAGCTGAAGATCCTCAAACACTTCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS CAA 72 bp TTGAGGATCTTCAGCTCCCTGAGGGTCCGTTTGGCATaGGTCACCACATCAAAAGCATTAGGTATCTTCTTG +
Preference number: 6 (lower is better)
Translates to: LRIFSSLRVRLA*VTTSKALGIFL
Trigger: CAAGAAGATACCTAATGCTTTTGATGTGGTGACCAATGCCAAACGGACCCTCAGGGAGCTGAAGATCCTCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS CAA 72 bp TTCAGGATGTCCTTGATGGCGATGATATTGTCGTGTTaGAAGTGTTTGAGGATCTTCAGCTCCCTGAGGGTC +
Preference number: 6 (lower is better)
Translates to: FRMSLMAMILSC*KCLRIFSSLRV
Trigger: GACCCTCAGGGAGCTGAAGATCCTCAAACACTTCAAACACGACAATATCATCGCCATCAAGGACATCCTGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS CAA 90 bp TCGTGTTTGAAGTGTTTGAGGATCTTCAGCTCCCTGAGGGTCCGTTaGGCATTGGTCACCACATCAAAAGCATTAGGTATCTTCTTGATG +
Preference number: 6 (lower is better)
Translates to: SCLKCLRIFSSLRVR*ALVTTSKALGIFLM
Trigger: CATCAAGAAGATACCTAATGCTTTTGATGTGGTGACCAATGCCAAACGGACCCTCAGGGAGCTGAAGATCCTCAAACACTTCAAACACGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2
CDS TCA 72 bp TCCTGTGGCCCATCAGCCACACCCATATCAAAAGATTaGTTTAAGAATTCCTCCAGATCAAAGCCAACTCCG +
Preference number: 6 (lower is better)
Translates to: SCGPSATPISKD*FKNSSRSKPTP
Trigger: CGGAGTTGGCTTTGATCTGGAGGAATTCTTAAATCAATCTTTTGATATGGGTGTGGCTGATGGGCCACAGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079080.13
ENSMUST00000101085.9
ENSMUST00000108714.2