Pregenerated sensors for MAPK6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000042688Ensembl transcript IDs: ENSMUST00000049355.11, ENSMUST00000168937.8
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | AGGCAAGGTTTTGTTTCCCGTAAAGCAGGTCACTGGTCTATGAGAATGTCTAATATGTATGTGTGTGTGTaGAAACGACATGCCAGTTCA | + |
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Preference number: 2 (lower is better) Translates to: RQGFVSRKAGHWSMRMSNMYVCV*KRHASS Trigger: TGAACTGGCATGTCGTTTGCACACACACACATACAT...ATTAGACATTCTCATAGACCAGTGACCTGCTTTACGGGAAACAAAACCTTGCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049355.11 ENSMUST00000168937.8 |
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| 3UTR-3UTR GCA 90 bp | AGGCAAGGTTTTGTTTCCCGTAAAGCAGGTCACTGGTCTATGAGAATGTCTAATTGCACTGCATTGTTTTaGTCTATTCTTTGCGTGTGT | + |
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Preference number: 2 (lower is better) Translates to: RQGFVSRKAGHWSMRMSNCTALF*SILCVC Trigger: ACACACGCAAAGAATAGAGCAAAACAATGCAGTGCA...ATTAGACATTCTCATAGACCAGTGACCTGCTTTACGGGAAACAAAACCTTGCCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049355.11 ENSMUST00000168937.8 |
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| 3UTR-3UTR TCA 90 bp | TTGTTTTGCTCTATTCTTTGCGTGTGTGTGCGTGTGTGTATGTATGTGTGTGTGACACAACGCATTTCATaGAGAACAAAGAGAAATGTC | + |
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Preference number: 2 (lower is better) Translates to: LFCSILCVCVRVCMYVCVTQRIS*RTKRNV Trigger: GACATTTCTCTTTGTTCTTCATGAAATGCGTTGTGT...CACACACACATACATACACACACGCACACACACGCAAAGAATAGAGCAAAACAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049355.11 ENSMUST00000168937.8 |
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| 3UTR-3UTR GCA 90 bp | AATGAACACCAGGACATGTATAAATGGTGGACGAGTCTCAATAGTTCACTACGATGCACTGCATTGTTTTaGTCTATTCTTTGCGTGTGT | + |
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Preference number: 2 (lower is better) Translates to: NEHQDMYKWWTSLNSSLRCTALF*SILCVC Trigger: ACACACGCAAAGAATAGAGCAAAACAATGCAGTGCA...TCGTAGTGAACTATTGAGACTCGTCCACCATTTATACATGTCCTGGTGTTCATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049355.11 ENSMUST00000168937.8 |
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| 3UTR-3UTR TCA 90 bp | AATGAACACCAGGACATGTATAAATGGTGGACGAGTCTCAATAGTTCACTACGAACACAACGCATTTCATaGAGAACAAAGAGAAATGTC | + |
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Preference number: 2 (lower is better) Translates to: NEHQDMYKWWTSLNSSLRTQRIS*RTKRNV Trigger: GACATTTCTCTTTGTTCTTCATGAAATGCGTTGTGT...TCGTAGTGAACTATTGAGACTCGTCCACCATTTATACATGTCCTGGTGTTCATT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049355.11 ENSMUST00000168937.8 |
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| 3UTR-3UTR CAA 90 bp | TCTATGAGAATGTCTAATCATCCTAGCGCATCTTGTCTCCTCCTGCACTGCATTGTTTTGCTCTATTCTTaGCGTGTGTGTGCGTGTGTG | + |
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Preference number: 3 (lower is better) Translates to: SMRMSNHPSASCLLLHCIVLLYS*RVCACV Trigger: CACACACGCACACACACGCAAAGAATAGAGCAAAAC...AATGCAGTGCAGGAGGAGACAAGATGCGCTAGGATGATTAGACATTCTCATAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049355.11 ENSMUST00000168937.8 |
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| 3UTR GCA 72 bp | GCACTGCATTGTTTTGCTCTATTCTTTGCGTGTGTGTaGGTGTGTGTATGTATGTGTGTGTGTGCAAACGAC | + |
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Preference number: 3 (lower is better) Translates to: ALHCFALFFACV*VCVCMCVCAND Trigger: GTCGTTTGCACACACACACATACATACACACACGCACACACACGCAAAGAATAGAGCAAAACAATGCAGTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049355.11 ENSMUST00000168937.8 |
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| 3UTR TCA 72 bp | AAGGTTTTGTTTCCCGTAAAGCAGGTCACTGGTCTATaGGAATGTCTAATCATCCTAGCGCATCTTGTCTCC | + |
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Preference number: 3 (lower is better) Translates to: KVLFPVKQVTGL*ECLIILAHLVS Trigger: GGAGACAAGATGCGCTAGGATGATTAGACATTCTCATAGACCAGTGACCTGCTTTACGGGAAACAAAACCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049355.11 ENSMUST00000168937.8 |
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| CDS-3UTR TCA 90 bp | TTGTTTTGCTCTATTCTTTGCGTGTGTGTGCGTGTGTGTATGTATGTGTGTGTGATCCCCGGCAGCAGCTaGGTGAGCGGTCTGTGTGGC | + |
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Preference number: 4 (lower is better) Translates to: LFCSILCVCVRVCMYVCVIPGSS*VSGLCG Trigger: GCCACACAGACCGCTCACTCAGCTGCTGCCGGGGAT...CACACACACATACATACACACACGCACACACACGCAAAGAATAGAGCAAAACAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049355.11 ENSMUST00000168937.8 |
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| CDS-3UTR TCA 90 bp | ATTGTTTTGCTCTATTCTTTGCGTGTGTGTGCGTGTGTGTATGTATGTGTGTGTATCCCCGGCAGCAGCTaGGTGAGCGGTCTGTGTGGC | + |
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Preference number: 4 (lower is better) Translates to: IVLLYSLRVCACVYVCVCIPGSS*VSGLCG Trigger: GCCACACAGACCGCTCACTCAGCTGCTGCCGGGGAT...ACACACACATACATACACACACGCACACACACGCAAAGAATAGAGCAAAACAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049355.11 ENSMUST00000168937.8 |
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| CDS-3UTR GCA 90 bp | TCTATGAGAATGTCTAATCATCCTAGCGCATCTTGTCTCCTCCTGCACTGCATTCTCCAGGAAATCCAGTaGTTCTCGGCTGATCCCCGG | + |
|
Preference number: 4 (lower is better) Translates to: SMRMSNHPSASCLLLHCILQEIQ*FSADPR Trigger: CCGGGGATCAGCCGAGAAGCACTGGATTTCCTGGAG...AATGCAGTGCAGGAGGAGACAAGATGCGCTAGGATGATTAGACATTCTCATAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049355.11 ENSMUST00000168937.8 |
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| CDS-3UTR CCA 90 bp | AGGCAAGGTTTTGTTTCCCGTAAAGCAGGTCACTGGTCTATGAGAATGTCTAATCTGGATGGACTTGAGTaGGGACCCCACTGGGCTGTG | + |
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Preference number: 4 (lower is better) Translates to: RQGFVSRKAGHWSMRMSNLDGLE*GPHWAV Trigger: CACAGCCCAGTGGGGTCCCCACTCAAGTCCATCCAG...ATTAGACATTCTCATAGACCAGTGACCTGCTTTACGGGAAACAAAACCTTGCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049355.11 ENSMUST00000168937.8 |
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| CDS-3UTR TCA 90 bp | AATGAACACCAGGACATGTATAAATGGTGGACGAGTCTCAATAGTTCACTACGATGCTGGGCACTGAGCTaGATGGTCCCCGCGATGAAG | + |
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Preference number: 4 (lower is better) Translates to: NEHQDMYKWWTSLNSSLRCWALS*MVPAMK Trigger: CTTCATCGCGGGGACCATTCAGCTCAGTGCCCAGCA...TCGTAGTGAACTATTGAGACTCGTCCACCATTTATACATGTCCTGGTGTTCATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049355.11 ENSMUST00000168937.8 |
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| CDS-3UTR CCA 90 bp | AGGCAAGGTTTTGTTTCCCGTAAAGCAGGTCACTGGTCTATGAGAATGTCTAATAAGGGTGGCTTGAGATaGGCTCATCCGTCGGGAAGG | + |
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Preference number: 4 (lower is better) Translates to: RQGFVSRKAGHWSMRMSNKGGLR*AHPSGR Trigger: CCTTCCCGACGGATGAGCCCATCTCAAGCCACCCTT...ATTAGACATTCTCATAGACCAGTGACCTGCTTTACGGGAAACAAAACCTTGCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049355.11 ENSMUST00000168937.8 |
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| CDS-3UTR CCA 90 bp | TTGTTTTGCTCTATTCTTTGCGTGTGTGTGCGTGTGTGTATGTATGTGTGTGTGAAGGGTGGCTTGAGATaGGCTCATCCGTCGGGAAGG | + |
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Preference number: 4 (lower is better) Translates to: LFCSILCVCVRVCMYVCVKGGLR*AHPSGR Trigger: CCTTCCCGACGGATGAGCCCATCTCAAGCCACCCTT...CACACACACATACATACACACACGCACACACACGCAAAGAATAGAGCAAAACAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049355.11 ENSMUST00000168937.8 |
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| CDS-3UTR CCA 90 bp | AGGCAAGGTTTTGTTTCCCGTAAAGCAGGTCACTGGTCTATGAGAATGTCTAATTCAAAGTCGAAGCCTTaGCCCCTCTCCCTCTCAGCC | + |
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Preference number: 4 (lower is better) Translates to: RQGFVSRKAGHWSMRMSNSKSKP*PLSLSA Trigger: GGCTGAGAGGGAGAGGGGCCAAGGCTTCGACTTTGA...ATTAGACATTCTCATAGACCAGTGACCTGCTTTACGGGAAACAAAACCTTGCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049355.11 ENSMUST00000168937.8 |
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| CDS-3UTR CCA 90 bp | AATGAACACCAGGACATGTATAAATGGTGGACGAGTCTCAATAGTTCACTACGACTGGATGGACTTGAGTaGGGACCCCACTGGGCTGTG | + |
|
Preference number: 4 (lower is better) Translates to: NEHQDMYKWWTSLNSSLRLDGLE*GPHWAV Trigger: CACAGCCCAGTGGGGTCCCCACTCAAGTCCATCCAG...TCGTAGTGAACTATTGAGACTCGTCCACCATTTATACATGTCCTGGTGTTCATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049355.11 ENSMUST00000168937.8 |
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| CDS-3UTR CCA 90 bp | AGGCAAGGTTTTGTTTCCCGTAAAGCAGGTCACTGGTCTATGAGAATGTCTAATGGTGTCAAGGTGGCCTaGATGGACTTGAGTGGGGAC | + |
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Preference number: 4 (lower is better) Translates to: RQGFVSRKAGHWSMRMSNGVKVA*MDLSGD Trigger: GTCCCCACTCAAGTCCATCCAGGCCACCTTGACACC...ATTAGACATTCTCATAGACCAGTGACCTGCTTTACGGGAAACAAAACCTTGCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049355.11 ENSMUST00000168937.8 |
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| CDS-3UTR TCA 90 bp | ATTGTTTTGCTCTATTCTTTGCGTGTGTGTGCGTGTGTGTATGTATGTGTGTGTGCCGGTCCATGGGGCTaGAAGTCAGAATCTGCTCCA | + |
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Preference number: 4 (lower is better) Translates to: IVLLYSLRVCACVYVCVCAGPWG*KSESAP Trigger: TGGAGCAGATTCTGACTTTCAGCCCCATGGACCGGC...ACACACACATACATACACACACGCACACACACGCAAAGAATAGAGCAAAACAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049355.11 ENSMUST00000168937.8 |
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| CDS-3UTR GCA 90 bp | ATTGTTTTGCTCTATTCTTTGCGTGTGTGTGCGTGTGTGTATGTATGTGTGTGTCTCCAGGAAATCCAGTaGTTCTCGGCTGATCCCCGG | + |
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Preference number: 4 (lower is better) Translates to: IVLLYSLRVCACVYVCVCLQEIQ*FSADPR Trigger: CCGGGGATCAGCCGAGAAGCACTGGATTTCCTGGAG...ACACACACATACATACACACACGCACACACACGCAAAGAATAGAGCAAAACAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049355.11 ENSMUST00000168937.8 |
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| CDS-3UTR CCA 90 bp | TTGTTTTGCTCTATTCTTTGCGTGTGTGTGCGTGTGTGTATGTATGTGTGTGTGGTTCTCGTGGTGATCTaGGTACTGCCAGCAGGGTTC | + |
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Preference number: 4 (lower is better) Translates to: LFCSILCVCVRVCMYVCVVLVVI*VLPAGF Trigger: GAACCCTGCTGGCAGTACCCAGATCACCACGAGAAC...CACACACACATACATACACACACGCACACACACGCAAAGAATAGAGCAAAACAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049355.11 ENSMUST00000168937.8 |
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| CDS-3UTR CCA 90 bp | AATGAACACCAGGACATGTATAAATGGTGGACGAGTCTCAATAGTTCACTACGATCAAAGTCGAAGCCTTaGCCCCTCTCCCTCTCAGCC | + |
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Preference number: 4 (lower is better) Translates to: NEHQDMYKWWTSLNSSLRSKSKP*PLSLSA Trigger: GGCTGAGAGGGAGAGGGGCCAAGGCTTCGACTTTGA...TCGTAGTGAACTATTGAGACTCGTCCACCATTTATACATGTCCTGGTGTTCATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049355.11 ENSMUST00000168937.8 |
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| CDS-3UTR CCA 90 bp | ATTGTTTTGCTCTATTCTTTGCGTGTGTGTGCGTGTGTGTATGTATGTGTGTGTGGTGTCAAGGTGGCCTaGATGGACTTGAGTGGGGAC | + |
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Preference number: 4 (lower is better) Translates to: IVLLYSLRVCACVYVCVCGVKVA*MDLSGD Trigger: GTCCCCACTCAAGTCCATCCAGGCCACCTTGACACC...ACACACACATACATACACACACGCACACACACGCAAAGAATAGAGCAAAACAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049355.11 ENSMUST00000168937.8 |
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| CDS-3UTR TCA 90 bp | AGGCAAGGTTTTGTTTCCCGTAAAGCAGGTCACTGGTCTATGAGAATGTCTAATTACTTGTTCTCGTGGTaGTCTGGGTACTGCCAGCAG | + |
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Preference number: 4 (lower is better) Translates to: RQGFVSRKAGHWSMRMSNYLFSW*SGYCQQ Trigger: CTGCTGGCAGTACCCAGATCACCACGAGAACAAGTA...ATTAGACATTCTCATAGACCAGTGACCTGCTTTACGGGAAACAAAACCTTGCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049355.11 ENSMUST00000168937.8 |
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| CDS-3UTR TCA 90 bp | AATGAACACCAGGACATGTATAAATGGTGGACGAGTCTCAATAGTTCACTACGATACTTGTTCTCGTGGTaGTCTGGGTACTGCCAGCAG | + |
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Preference number: 4 (lower is better) Translates to: NEHQDMYKWWTSLNSSLRYLFSW*SGYCQQ Trigger: CTGCTGGCAGTACCCAGATCACCACGAGAACAAGTA...TCGTAGTGAACTATTGAGACTCGTCCACCATTTATACATGTCCTGGTGTTCATT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049355.11 ENSMUST00000168937.8 |
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| CDS-3UTR TCA 90 bp | TTGTTTTGCTCTATTCTTTGCGTGTGTGTGCGTGTGTGTATGTATGTGTGTGTGCATGCTCGTCCTTCCTaGCCTCACAACAAAACTGAC | + |
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Preference number: 4 (lower is better) Translates to: LFCSILCVCVRVCMYVCVHARPS*PHNKTD Trigger: GTCAGTTTTGTTGTGAGGTCAGGAAGGACGAGCATG...CACACACACATACATACACACACGCACACACACGCAAAGAATAGAGCAAAACAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049355.11 ENSMUST00000168937.8 |
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| CDS-3UTR CCA 90 bp | TTGTTTTGCTCTATTCTTTGCGTGTGTGTGCGTGTGTGTATGTATGTGTGTGTGTCTATGTGGAAAGGGTaGCTTGAGATGGGCTCATCC | + |
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Preference number: 4 (lower is better) Translates to: LFCSILCVCVRVCMYVCVSMWKG*LEMGSS Trigger: GGATGAGCCCATCTCAAGCCACCCTTTCCACATAGA...CACACACACATACATACACACACGCACACACACGCAAAGAATAGAGCAAAACAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049355.11 ENSMUST00000168937.8 |
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| CDS-3UTR TCA 90 bp | TTGTTTTGCTCTATTCTTTGCGTGTGTGTGCGTGTGTGTATGTATGTGTGTGTGACCTCACAACAAAACTaGCTGATGAGGAAGCACTCC | + |
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Preference number: 4 (lower is better) Translates to: LFCSILCVCVRVCMYVCVTSQQN*LMRKHS Trigger: GGAGTGCTTCCTCATCAGTCAGTTTTGTTGTGAGGT...CACACACACATACATACACACACGCACACACACGCAAAGAATAGAGCAAAACAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049355.11 ENSMUST00000168937.8 |
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| CDS-3UTR TCA 90 bp | ATTGTTTTGCTCTATTCTTTGCGTGTGTGTGCGTGTGTGTATGTATGTGTGTGTCATGCTCGTCCTTCCTaGCCTCACAACAAAACTGAC | + |
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Preference number: 4 (lower is better) Translates to: IVLLYSLRVCACVYVCVCHARPS*PHNKTD Trigger: GTCAGTTTTGTTGTGAGGTCAGGAAGGACGAGCATG...ACACACACATACATACACACACGCACACACACGCAAAGAATAGAGCAAAACAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049355.11 ENSMUST00000168937.8 |
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| CDS-3UTR TCA 90 bp | TTGTTTTGCTCTATTCTTTGCGTGTGTGTGCGTGTGTGTATGTATGTGTGTGTGCTTTTCTCGGCTGACTaGCTTGGATATCAGGCTTTT | + |
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Preference number: 4 (lower is better) Translates to: LFCSILCVCVRVCMYVCVLFSAD*LGYQAF Trigger: AAAAGCCTGATATCCAAGTCAGTCAGCCGAGAAAAG...CACACACACATACATACACACACGCACACACACGCAAAGAATAGAGCAAAACAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049355.11 ENSMUST00000168937.8 |
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| CDS-3UTR TCA 90 bp | ATTGTTTTGCTCTATTCTTTGCGTGTGTGTGCGTGTGTGTATGTATGTGTGTGTACCTCACAACAAAACTaGCTGATGAGGAAGCACTCC | + |
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Preference number: 4 (lower is better) Translates to: IVLLYSLRVCACVYVCVCTSQQN*LMRKHS Trigger: GGAGTGCTTCCTCATCAGTCAGTTTTGTTGTGAGGT...ACACACACATACATACACACACGCACACACACGCAAAGAATAGAGCAAAACAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049355.11 ENSMUST00000168937.8 |
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| CDS-3UTR CCA 90 bp | AGGCAAGGTTTTGTTTCCCGTAAAGCAGGTCACTGGTCTATGAGAATGTCTAATTTTCGAGGATCAACTTaGACTTCTTCTTCATCGGTG | + |
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Preference number: 4 (lower is better) Translates to: RQGFVSRKAGHWSMRMSNFRGST*TSSSSV Trigger: CACCGATGAAGAAGAAGTCCAAGTTGATCCTCGAAA...ATTAGACATTCTCATAGACCAGTGACCTGCTTTACGGGAAACAAAACCTTGCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049355.11 ENSMUST00000168937.8 |
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| CDS-3UTR GCA 90 bp | AATGAACACCAGGACATGTATAAATGGTGGACGAGTCTCAATAGTTCACTACGATCTCACACTTGGACTTaGCTCTCTTATCGGATTTTT | + |
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Preference number: 4 (lower is better) Translates to: NEHQDMYKWWTSLNSSLRSHTWT*LSYRIF Trigger: AAAAATCCGATAAGAGAGGCAAGTCCAAGTGTGAGA...TCGTAGTGAACTATTGAGACTCGTCCACCATTTATACATGTCCTGGTGTTCATT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049355.11 ENSMUST00000168937.8 |
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| CDS-3UTR CAA 90 bp | TCTATGAGAATGTCTAATCATCCTAGCGCATCTTGTCTCCTCCTGCACTGCATTGTGGCCTGGATGGACTaGAGTGGGGACCCCACTGGG | + |
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Preference number: 5 (lower is better) Translates to: SMRMSNHPSASCLLLHCIVAWMD*SGDPTG Trigger: CCCAGTGGGGTCCCCACTCAAGTCCATCCAGGCCAC...AATGCAGTGCAGGAGGAGACAAGATGCGCTAGGATGATTAGACATTCTCATAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049355.11 ENSMUST00000168937.8 |
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| CDS-3UTR CAA 90 bp | TCTATGAGAATGTCTAATCATCCTAGCGCATCTTGTCTCCTCCTGCACTGCATTGTCAAAGTCGAAGCCTaGGCCCCTCTCCCTCTCAGC | + |
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Preference number: 5 (lower is better) Translates to: SMRMSNHPSASCLLLHCIVKVEA*APLPLS Trigger: GCTGAGAGGGAGAGGGGCCAAGGCTTCGACTTTGAC...AATGCAGTGCAGGAGGAGACAAGATGCGCTAGGATGATTAGACATTCTCATAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049355.11 ENSMUST00000168937.8 |
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| CDS-3UTR CAA 90 bp | AATGAACACCAGGACATGTATAAATGGTGGACGAGTCTCAATAGTTCACTACGAGTGGCCTGGATGGACTaGAGTGGGGACCCCACTGGG | + |
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Preference number: 5 (lower is better) Translates to: NEHQDMYKWWTSLNSSLRVAWMD*SGDPTG Trigger: CCCAGTGGGGTCCCCACTCAAGTCCATCCAGGCCAC...TCGTAGTGAACTATTGAGACTCGTCCACCATTTATACATGTCCTGGTGTTCATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049355.11 ENSMUST00000168937.8 |
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| CDS-3UTR CAA 90 bp | ATTGTTTTGCTCTATTCTTTGCGTGTGTGTGCGTGTGTGTATGTATGTGTGTGTAGCGCGATCTGCGCCTaGACCAACCCGTTCCTCTCA | + |
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Preference number: 5 (lower is better) Translates to: IVLLYSLRVCACVYVCVCSAICA*TNPFLS Trigger: TGAGAGGAACGGGTTGGTCAAGGCGCAGATCGCGCT...ACACACACATACATACACACACGCACACACACGCAAAGAATAGAGCAAAACAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049355.11 ENSMUST00000168937.8 |
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| CDS-3UTR CAA 90 bp | AATGAACACCAGGACATGTATAAATGGTGGACGAGTCTCAATAGTTCACTACGATGTGGAAAGGGTGGCTaGAGATGGGCTCATCCGTCG | + |
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Preference number: 5 (lower is better) Translates to: NEHQDMYKWWTSLNSSLRCGKGG*RWAHPS Trigger: CGACGGATGAGCCCATCTCAAGCCACCCTTTCCACA...TCGTAGTGAACTATTGAGACTCGTCCACCATTTATACATGTCCTGGTGTTCATT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049355.11 ENSMUST00000168937.8 |
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| CDS-3UTR CAA 90 bp | AGGCAAGGTTTTGTTTCCCGTAAAGCAGGTCACTGGTCTATGAGAATGTCTAATCCGTTCCTCTCACACTaGGACTTGCCTCTCTTATCG | + |
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Preference number: 5 (lower is better) Translates to: RQGFVSRKAGHWSMRMSNPFLSH*DLPLLS Trigger: CGATAAGAGAGGCAAGTCCAAGTGTGAGAGGAACGG...ATTAGACATTCTCATAGACCAGTGACCTGCTTTACGGGAAACAAAACCTTGCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049355.11 ENSMUST00000168937.8 |
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| CDS-3UTR CAA 90 bp | TCTATGAGAATGTCTAATCATCCTAGCGCATCTTGTCTCCTCCTGCACTGCATTTTTTCGAGGATCAACTaGGACTTCTTCTTCATCGGT | + |
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Preference number: 5 (lower is better) Translates to: SMRMSNHPSASCLLLHCIFSRIN*DFFFIG Trigger: ACCGATGAAGAAGAAGTCCAAGTTGATCCTCGAAAA...AATGCAGTGCAGGAGGAGACAAGATGCGCTAGGATGATTAGACATTCTCATAGA 43% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 2 transcripts: ENSMUST00000049355.11 ENSMUST00000168937.8 |
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| CDS GCA 72 bp | GCTCCCAGCTGGGCCAGGTTAGCCCTTCCCTTTTCTTaGTTTTCTCGGCTGACTGACTTGGATATCAGGCTT | + |
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Preference number: 6 (lower is better) Translates to: APSWARLALPFS*FSRLTDLDIRL Trigger: AAGCCTGATATCCAAGTCAGTCAGCCGAGAAAAGCAAGAAAAGGGAAGGGCTAACCTGGCCCAGCTGGGAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049355.11 ENSMUST00000168937.8 |
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