RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MAPK4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024558

Ensembl transcript IDs: ENSMUST00000091851.10, ENSMUST00000159162.2, ENSMUST00000162863.8

Found 310 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TGGGTCCACCTGAACATCCTCCGCCAGCGGTGTAGAGCCTGCACGTaGATCGCGCTGCACCTCGCTGGCGTCCTGGCACCGGTCAGGCCG +
Preference number: 1 (lower is better)
Translates to: WVHLNILRQRCRACT*IALHLAGVLAPVRP
Trigger: CGGCCTGACCGGTGCCAGGACGCCAGCGAGGTGCAGCGCGATCCACGTGCAGGCTCTACACCGCTGGCGGAGGATGTTCAGGTGGACCCA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR GCA 90 bp CTTGCGTGGGTCCACCTGAACATCCTCCGCCAGCGGTGTAGAGCCTaGACGTGGATCGCGCTGCACCTCGCTGGCGTCCTGGCACCGGTC +
Preference number: 1 (lower is better)
Translates to: LAWVHLNILRQRCRA*TWIALHLAGVLAPV
Trigger: GACCGGTGCCAGGACGCCAGCGAGGTGCAGCGCGATCCACGTGCAGGCTCTACACCGCTGGCGGAGGATGTTCAGGTGGACCCACGCAAG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR CCA 90 bp CTGGCTCATCCTCACGTGACACAGGGTCTGCTGCTACTGCAGCCCTaGGGGGAGCGCTGGCCGCCTGCTTCCAGTGCGACAGGTCCAGGA +
Preference number: 1 (lower is better)
Translates to: LAHPHVTQGLLLLQP*GERWPPASSATGPG
Trigger: TCCTGGACCTGTCGCACTGGAAGCAGGCGGCCAGCGCTCCCCCCAGGGCTGCAGTAGCAGCAGACCCTGTGTCACGTGAGGATGAGCCAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR CCA 90 bp GGTGTAGAGCCTGCACGTGGATCGCGCTGCACCTCGCTGGCGTCCTaGCACCGGTCAGGCCGCCATTCCAGATCTGAGGACAGGCTCACA +
Preference number: 1 (lower is better)
Translates to: GVEPARGSRCTSLAS*HRSGRHSRSEDRLT
Trigger: TGTGAGCCTGTCCTCAGATCTGGAATGGCGGCCTGACCGGTGCCAGGACGCCAGCGAGGTGCAGCGCGATCCACGTGCAGGCTCTACACC
66% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162863.8
3UTR TCA 90 bp AGGAAGCGCTCGGAGCTGCTCTGTGAGTCCTTGCGTGGGTCCACCTaGACATCCTCCGCCAGCGGTGTAGAGCCTGCACGTGGATCGCGC +
Preference number: 1 (lower is better)
Translates to: RKRSELLCESLRGST*TSSASGVEPARGSR
Trigger: GCGCGATCCACGTGCAGGCTCTACACCGCTGGCGGAGGATGTTCAGGTGGACCCACGCAAGGACTCACAGAGCAGCTCCGAGCGCTTCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR TCA 90 bp CACCTCGCTGGCGTCCTGGCACCGGTCAGGCCGCCATTCCAGATCTaGGGACAGGCTCACAGGATACCTGTCCCAGTTGGAGAGCTGGCT +
Preference number: 1 (lower is better)
Translates to: HLAGVLAPVRPPFQI*GQAHRIPVPVGELA
Trigger: AGCCAGCTCTCCAACTGGGACAGGTATCCTGTGAGCCTGTCCTCAGATCTGGAATGGCGGCCTGACCGGTGCCAGGACGCCAGCGAGGTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162863.8
3UTR GCA 90 bp CGCGCTCCATGGACGAGTGTGACTGCTCCAGGAAGCGCTCGGAGCTaGTCTGTGAGTCCTTGCGTGGGTCCACCTGAACATCCTCCGCCA +
Preference number: 1 (lower is better)
Translates to: RAPWTSVTAPGSARS*SVSPCVGPPEHPPP
Trigger: TGGCGGAGGATGTTCAGGTGGACCCACGCAAGGACTCACAGAGCAGCTCCGAGCGCTTCCTGGAGCAGTCACACTCGTCCATGGAGCGCG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR CCA 90 bp TGTAGTCGCAGGACCGTCCATAGTCGGCCTCGAAGGCGCGCTCCATaGACGAGTGTGACTGCTCCAGGAAGCGCTCGGAGCTGCTCTGTG +
Preference number: 1 (lower is better)
Translates to: CSRRTVHSRPRRRAP*TSVTAPGSARSCSV
Trigger: CACAGAGCAGCTCCGAGCGCTTCCTGGAGCAGTCACACTCGTCCATGGAGCGCGCCTTCGAGGCCGACTATGGACGGTCCTGCGACTACA
63% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR GCA 90 bp TGGAGAAGGCCTCTGTCTGCACGAGGTCGCCAGGGTGCTCAGAGATaGACGCGCCATTCAGGTCGCCCAGTTTGTTTTCCGGGAGGTCCT +
Preference number: 1 (lower is better)
Translates to: WRRPLSARGRQGAQR*TRHSGRPVCFPGGP
Trigger: AGGACCTCCCGGAAAACAAACTGGGCGACCTGAATGGCGCGTGCATCTCTGAGCACCCTGGCGACCTCGTGCAGACAGAGGCCTTCTCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR CCA 90 bp GTGCAGAGCTTTAGGGCACGCGAGATGAACACGTCTAAGTCGAACTaGGGACTGGCACCCCCATCGATGGGTGTTGGGTGTCCCGGGGGT +
Preference number: 1 (lower is better)
Translates to: VQSFRAREMNTSKSN*GLAPPSMGVGCPGG
Trigger: ACCCCCGGGACACCCAACACCCATCGATGGGGGTGCCAGTCCCCAGTTCGACTTAGACGTGTTCATCTCGCGTGCCCTAAAGCTCTGCAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR TCA 90 bp CGGATCCGCGTGTGTTCTGCTAACCCCAACGCAGCAGAGAGGGGATaGAGGAGTGCGAGGGAGCACGGAAGTGGTCCAGCTTTCTGGATG +
Preference number: 1 (lower is better)
Translates to: RIRVCSANPNAAERG*RSAREHGSGPAFWM
Trigger: CATCCAGAAAGCTGGACCACTTCCGTGCTCCCTCGCACTCCTTCATCCCCTCTCTGCTGCGTTGGGGTTAGCAGAACACACGCGGATCCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR TCA 90 bp CCGGGAGGTCCTCAGGTTTGGTGCAGAGCTTTAGGGCACGCGAGATaGACACGTCTAAGTCGAACTGGGGACTGGCACCCCCATCGATGG +
Preference number: 1 (lower is better)
Translates to: PGGPQVWCRALGHAR*TRLSRTGDWHPHRW
Trigger: CCATCGATGGGGGTGCCAGTCCCCAGTTCGACTTAGACGTGTTCATCTCGCGTGCCCTAAAGCTCTGCACCAAACCTGAGGACCTCCCGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR GCA 90 bp CACCCCTTCTGTGCTCACCACCTTTCTTTGGAGAAGGCCTCTGTCTaGACGAGGTCGCCAGGGTGCTCAGAGATGCACGCGCCATTCAGG +
Preference number: 1 (lower is better)
Translates to: HPFCAHHLSLEKASV*TRSPGCSEMHAPFR
Trigger: CCTGAATGGCGCGTGCATCTCTGAGCACCCTGGCGACCTCGTGCAGACAGAGGCCTTCTCCAAAGAAAGGTGGTGAGCACAGAAGGGGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR TCA 90 bp CAGCACGATGTCGTCGATCTCGTCCTCAATGCGGAAAGGGTGTTGTaGGGTGGGCTCATCCTCGGGGCACGAGTACGGGCTCATGTAAGG +
Preference number: 1 (lower is better)
Translates to: QHDVVDLVLNAERVL*GGLILGARVRAHVR
Trigger: CCTTACATGAGCCCGTACTCGTGCCCCGAGGATGAGCCCACCTCACAACACCCTTTCCGCATTGAGGACGAGATCGACGACATCGTGCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162863.8
3UTR TCA 90 bp GAGGACAGGCTCACAGGATACCTGTCCCAGTTGGAGAGCTGGCTCTaGCTGGCAGCCATCAGCACGATGTCGTCGATCTCGTCCTCAATG +
Preference number: 1 (lower is better)
Translates to: EDRLTGYLSQLESWL*LAAISTMSSISSSM
Trigger: CATTGAGGACGAGATCGACGACATCGTGCTGATGGCTGCCAGTCAGAGCCAGCTCTCCAACTGGGACAGGTATCCTGTGAGCCTGTCCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162863.8
3UTR CCA 90 bp ACAGGCTCACAGGATACCTGTCCCAGTTGGAGAGCTGGCTCTGACTaGCAGCCATCAGCACGATGTCGTCGATCTCGTCCTCAATGCGGA +
Preference number: 1 (lower is better)
Translates to: TGSQDTCPSWRAGSD*QPSARCRRSRPQCG
Trigger: TCCGCATTGAGGACGAGATCGACGACATCGTGCTGATGGCTGCCAGTCAGAGCCAGCTCTCCAACTGGGACAGGTATCCTGTGAGCCTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162863.8
3UTR CCA 90 bp GGTCCTAACGGCTTCTCTGGGCCCAAATGTCCATTTGAGACTAAGTaGGTCACGTGGCTTGGAAACTGTCTGCAAGCTGTTTCTGACCCC +
Preference number: 1 (lower is better)
Translates to: GPNGFSGPKCPFETK*VTWLGNCLQAVSDP
Trigger: GGGGTCAGAAACAGCTTGCAGACAGTTTCCAAGCCACGTGACCCACTTAGTCTCAAATGGACATTTGGGCCCAGAGAAGCCGTTAGGACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR GCA 90 bp TGCAAGCTGTTTCTGACCCCTCTACTCTTGCAGGGCGTAGACTGCTaGCCTAGATCCCTTTCTTCCCTTGCACACAATCTCAACAGACCT +
Preference number: 1 (lower is better)
Translates to: CKLFLTPLLLQGVDC*PRSLSSLAHNLNRP
Trigger: AGGTCTGTTGAGATTGTGTGCAAGGGAAGAAAGGGATCTAGGGCAGCAGTCTACGCCCTGCAAGAGTAGAGGGGTCAGAAACAGCTTGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR GCA 90 bp GTCTGCAAGCTGTTTCTGACCCCTCTACTCTTGCAGGGCGTAGACTaGTGCCCTAGATCCCTTTCTTCCCTTGCACACAATCTCAACAGA +
Preference number: 1 (lower is better)
Translates to: VCKLFLTPLLLQGVD*CPRSLSSLAHNLNR
Trigger: TCTGTTGAGATTGTGTGCAAGGGAAGAAAGGGATCTAGGGCAGCAGTCTACGCCCTGCAAGAGTAGAGGGGTCAGAAACAGCTTGCAGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR GCA 90 bp AAACTCACCCATGTACAATATCTATTGGGGAACGAGTCAGGAAAGTaGATAGGGCATGCAGGTGGAGGCTGTAGGCACAGGCCTGGGAGA +
Preference number: 1 (lower is better)
Translates to: KLTHVQYLLGNESGK*IGHAGGGCRHRPGR
Trigger: TCTCCCAGGCCTGTGCCTACAGCCTCCACCTGCATGCCCTATGCACTTTCCTGACTCGTTCCCCAATAGATATTGTACATGGGTGAGTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR GCA 90 bp AATGTCCATTTGAGACTAAGTGGGTCACGTGGCTTGGAAACTGTCTaGAAGCTGTTTCTGACCCCTCTACTCTTGCAGGGCGTAGACTGC +
Preference number: 1 (lower is better)
Translates to: NVHLRLSGSRGLETV*KLFLTPLLLQGVDC
Trigger: GCAGTCTACGCCCTGCAAGAGTAGAGGGGTCAGAAACAGCTTGCAGACAGTTTCCAAGCCACGTGACCCACTTAGTCTCAAATGGACATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR GCA 90 bp GGGTGGGTGGGAGGCTGGGGTCTGGACAAGAGGGATTCTTGTGATTaGTGTCTTCAAACTCACCCATGTACAATATCTATTGGGGAACGA +
Preference number: 1 (lower is better)
Translates to: GWVGGWGLDKRDSCD*CLQTHPCTISIGER
Trigger: TCGTTCCCCAATAGATATTGTACATGGGTGAGTTTGAAGACAGCAATCACAAGAATCCCTCTTGTCCAGACCCCAGCCTCCCACCCACCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR CCA 90 bp GGCTTCTCTGGGCCCAAATGTCCATTTGAGACTAAGTGGGTCACGTaGCTTGGAAACTGTCTGCAAGCTGTTTCTGACCCCTCTACTCTT +
Preference number: 1 (lower is better)
Translates to: GFSGPKCPFETKWVT*LGNCLQAVSDPSTL
Trigger: AAGAGTAGAGGGGTCAGAAACAGCTTGCAGACAGTTTCCAAGCCACGTGACCCACTTAGTCTCAAATGGACATTTGGGCCCAGAGAAGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR CCA 90 bp TCCGCCAGCGGTGTAGAGCCTGCACGTGGATCGCGCTGCACCTCGCTGGCGTCCCTGCTACTGCAGCCCTaGGGGGAGCGCTGGCCGCCT +
Preference number: 2 (lower is better)
Translates to: SASGVEPARGSRCTSLASLLLQP*GERWPP
Trigger: AGGCGGCCAGCGCTCCCCCCAGGGCTGCAGTAGCAG...GGACGCCAGCGAGGTGCAGCGCGATCCACGTGCAGGCTCTACACCGCTGGCGGA
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR TCA 90 bp CATCGATGGGTGTTGGGTGTCCCGGGGGTGAGGCAGAGAGACGGGGCTCTGGGGCTCGGAGCTGCTCTGTaGGTCCTTGCGTGGGTCCAC +
Preference number: 2 (lower is better)
Translates to: HRWVLGVPGVRQRDGALGLGAAL*VLAWVH
Trigger: GTGGACCCACGCAAGGACTCACAGAGCAGCTCCGAG...CCCCAGAGCCCCGTCTCTCTGCCTCACCCCCGGGACACCCAACACCCATCGATG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR GCA 90 bp TCGAAGGCGCGCTCCATGGACGAGTGTGACTGCTCCAGGAAGCGCTCGGAGCTGGCACGTGGATCGCGCTaGACCTCGCTGGCGTCCTGG +
Preference number: 2 (lower is better)
Translates to: SKARSMDECDCSRKRSELARGSR*TSLASW
Trigger: CCAGGACGCCAGCGAGGTGCAGCGCGATCCACGTGC...CAGCTCCGAGCGCTTCCTGGAGCAGTCACACTCGTCCATGGAGCGCGCCTTCGA
67% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR GCA 90 bp CATCGATGGGTGTTGGGTGTCCCGGGGGTGAGGCAGAGAGACGGGGCTCTGGGGGGAAGCGCTCGGAGCTaGTCTGTGAGTCCTTGCGTG +
Preference number: 2 (lower is better)
Translates to: HRWVLGVPGVRQRDGALGGSARS*SVSPCV
Trigger: CACGCAAGGACTCACAGAGCAGCTCCGAGCGCTTCC...CCCCAGAGCCCCGTCTCTCTGCCTCACCCCCGGGACACCCAACACCCATCGATG
66% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR CCA 90 bp GCTCGGAGCTGCTCTGTGAGTCCTTGCGTGGGTCCACCTGAACATCCTCCGCCAACCTCGCTGGCGTCCTaGCACCGGTCAGGCCGCCAT +
Preference number: 2 (lower is better)
Translates to: ARSCSVSPCVGPPEHPPPTSLAS*HRSGRH
Trigger: ATGGCGGCCTGACCGGTGCCAGGACGCCAGCGAGGT...TGGCGGAGGATGTTCAGGTGGACCCACGCAAGGACTCACAGAGCAGCTCCGAGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR CCA 90 bp TTTGTAGTCGCAGGACCGTCCATAGTCGGCCTCGAAGGCGCGCTCCATGGACGAACCTCGCTGGCGTCCTaGCACCGGTCAGGCCGCCAT +
Preference number: 2 (lower is better)
Translates to: FVVAGPSIVGLEGALHGRTSLAS*HRSGRH
Trigger: ATGGCGGCCTGACCGGTGCCAGGACGCCAGCGAGGT...TCGTCCATGGAGCGCGCCTTCGAGGCCGACTATGGACGGTCCTGCGACTACAAA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR TCA 90 bp CTGGTCCAGGGGCAGGGGCTTGGGACACAGGCTTCTGACACCATTAGGCTGGTGGCAGCAGAGAGGGGATaGAGGAGTGCGAGGGAGCAC +
Preference number: 2 (lower is better)
Translates to: LVQGQGLGTQASDTIRLVAAERG*RSAREH
Trigger: GTGCTCCCTCGCACTCCTTCATCCCCTCTCTGCTGC...CACCAGCCTAATGGTGTCAGAAGCCTGTGTCCCAAGCCCCTGCCCCTGGACCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR GCA 90 bp TTCTTTCTCCCCGGATCCGCGTGTGTTCTGCTAACCCCAACGCAGCAGAGAGGGGCACGTGGATCGCGCTaGACCTCGCTGGCGTCCTGG +
Preference number: 2 (lower is better)
Translates to: FFLPGSACVLLTPTQQRGARGSR*TSLASW
Trigger: CCAGGACGCCAGCGAGGTGCAGCGCGATCCACGTGC...CCCTCTCTGCTGCGTTGGGGTTAGCAGAACACACGCGGATCCGGGGAGAAAGAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR CCA 90 bp AAGGCGCGCTCCATGGACGAGTGTGACTGCTCCAGGAAGCGCTCGGAGCTGCTCCGAAGGCGCGCTCCATaGACGAGTGTGACTGCTCCA +
Preference number: 2 (lower is better)
Translates to: KARSMDECDCSRKRSELLRRRAP*TSVTAP
Trigger: TGGAGCAGTCACACTCGTCCATGGAGCGCGCCTTCG...GAGCAGCTCCGAGCGCTTCCTGGAGCAGTCACACTCGTCCATGGAGCGCGCCTT
63% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR CCA 90 bp CTTCCCTTCGATGGGAAACTGACGGCTCCCAGCCAGGCTCGGTTCAAACCCGCTGGGTGGGTGGGAGGCTaGGGTCTGGACAAGAGGGAT +
Preference number: 2 (lower is better)
Translates to: LPFDGKLTAPSQARFKPAGWVGG*GLDKRD
Trigger: ATCCCTCTTGTCCAGACCCCAGCCTCCCACCCACCC...AGCGGGTTTGAACCGAGCCTGGCTGGGAGCCGTCAGTTTCCCATCGAAGGGAAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR CCA 90 bp GCTTGTCCAGGTAGGATGGAGACCCCACTTTGTAGTCGCAGGACCGTCCATAGTCGCGCTGCACCTCGCTaGCGTCCTGGCACCGGTCAG +
Preference number: 2 (lower is better)
Translates to: ACPGRMETPLCSRRTVHSRAAPR*RPGTGQ
Trigger: CTGACCGGTGCCAGGACGCCAGCGAGGTGCAGCGCG...ACTATGGACGGTCCTGCGACTACAAAGTGGGGTCTCCATCCTACCTGGACAAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR TCA 90 bp CCCCAGCAGAGGAAGACATTATACTGTGGTCAGACACTGGTCCAGGGGCAGGGGGCAGCAGAGAGGGGATaGAGGAGTGCGAGGGAGCAC +
Preference number: 2 (lower is better)
Translates to: PQQRKTLYCGQTLVQGQGAAERG*RSAREH
Trigger: GTGCTCCCTCGCACTCCTTCATCCCCTCTCTGCTGC...CCCCTGCCCCTGGACCAGTGTCTGACCACAGTATAATGTCTTCCTCTGCTGGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR TCA 90 bp TTCAGGTCGCCCAGTTTGTTTTCCGGGAGGTCCTCAGGTTTGGTGCAGAGCTTTTGGGTGTCCCGGGGGTaGGGCAGAGAGACGGGGCTC +
Preference number: 2 (lower is better)
Translates to: FRSPSLFSGRSSGLVQSFWVSRG*GRETGL
Trigger: GAGCCCCGTCTCTCTGCCTCACCCCCGGGACACCCA...AAAGCTCTGCACCAAACCTGAGGACCTCCCGGAAAACAAACTGGGCGACCTGAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR GCA 90 bp CTTCCCTTCGATGGGAAACTGACGGCTCCCAGCCAGGCTCGGTTCAAACCCGCTGGTCCTCAGGTTTGGTaGAGAGCTTTAGGGCACGCG +
Preference number: 2 (lower is better)
Translates to: LPFDGKLTAPSQARFKPAGPQVW*RALGHA
Trigger: CGCGTGCCCTAAAGCTCTGCACCAAACCTGAGGACC...AGCGGGTTTGAACCGAGCCTGGCTGGGAGCCGTCAGTTTCCCATCGAAGGGAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR GCA 90 bp GGGAGGAGAGATTCCAGTGGCAGAGTGTTCAGGGACAGACCGGGGACTGTTTGTCGTCCGGGAGCAGCTTaGGCAGTGGCCTCTTCACCT +
Preference number: 2 (lower is better)
Translates to: GRRDSSGRVFRDRPGTVCRPGAA*AVASSP
Trigger: AGGTGAAGAGGCCACTGCGCAAGCTGCTCCCGGACG...ACAAACAGTCCCCGGTCTGTCCCTGAACACTCTGCCACTGGAATCTCTCCTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162863.8
3UTR CAA 90 bp TCGCCAGGGTGCTCAGAGATGCACGCGCCATTCAGGTCGCCCAGTTaGTTTTCCGGGAGGTCCTCAGGTTTGGTGCAGAGCTTTAGGGCA +
Preference number: 2 (lower is better)
Translates to: SPGCSEMHAPFRSPS*FSGRSSGLVQSFRA
Trigger: TGCCCTAAAGCTCTGCACCAAACCTGAGGACCTCCCGGAAAACAAACTGGGCGACCTGAATGGCGCGTGCATCTCTGAGCACCCTGGCGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR TCA 90 bp GTAGACTGCTGCCCTAGATCCCTTTCTTCCCTTGCACACAATCTCAACAGACCTTGGGTGTCCCGGGGGTaGGGCAGAGAGACGGGGCTC +
Preference number: 2 (lower is better)
Translates to: VDCCPRSLSSLAHNLNRPWVSRG*GRETGL
Trigger: GAGCCCCGTCTCTCTGCCTCACCCCCGGGACACCCA...AGGTCTGTTGAGATTGTGTGCAAGGGAAGAAAGGGATCTAGGGCAGCAGTCTAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR TCA 90 bp GTCAGACACTGGTCCAGGGGCAGGGGCTTGGGACACAGGCTTCTGACACCATTAAGGACGGCATCACCCTaGGCAGCTCCTCCTTGTCTT +
Preference number: 2 (lower is better)
Translates to: VRHWSRGRGLGHRLLTPLRTASP*AAPPCL
Trigger: AAGACAAGGAGGAGCTGCTCAGGGTGATGCCGTCCT...TAATGGTGTCAGAAGCCTGTGTCCCAAGCCCCTGCCCCTGGACCAGTGTCTGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162863.8
3UTR-3UTR TCA 90 bp CTGTTTCTGACCCCTCTACTCTTGCAGGGCGTAGACTGCTGCCCTAGATCCCTTGCGGAAAGGGTGTTGTaGGGTGGGCTCATCCTCGGG +
Preference number: 2 (lower is better)
Translates to: LFLTPLLLQGVDCCPRSLAERVL*GGLILG
Trigger: CCCGAGGATGAGCCCACCTCACAACACCCTTTCCGC...AAGGGATCTAGGGCAGCAGTCTACGCCCTGCAAGAGTAGAGGGGTCAGAAACAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162863.8
3UTR-3UTR GCA 90 bp CCAACGCAGCAGAGAGGGGATGAAGGAGTGCGAGGGAGCACGGAAGTGGTCCAGTGCTCTGTGAGTCCTTaGGTGGGTCCACCTGAACAT +
Preference number: 2 (lower is better)
Translates to: PTQQRGDEGVRGSTEVVQCSVSP*VGPPEH
Trigger: ATGTTCAGGTGGACCCACGCAAGGACTCACAGAGCA...CTGGACCACTTCCGTGCTCCCTCGCACTCCTTCATCCCCTCTCTGCTGCGTTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR GCA 90 bp GCTTCTCTGGGCCCAAATGTCCATTTGAGACTAAGTGGGTCACGTGGCTTGGAAGGAGCGCTGGCCGCCTaGTTCCAGTGCGACAGGTCC +
Preference number: 2 (lower is better)
Translates to: ASLGPNVHLRLSGSRGLEGALAA*FQCDRS
Trigger: GGACCTGTCGCACTGGAAGCAGGCGGCCAGCGCTCC...TTCCAAGCCACGTGACCCACTTAGTCTCAAATGGACATTTGGGCCCAGAGAAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR CCA 90 bp TTCTTTCTCCCCGGATCCGCGTGTGTTCTGCTAACCCCAACGCAGCAGAGAGGGAGTGGTCCAGCTTTCTaGATGGGGATCCTGCTCCGG +
Preference number: 2 (lower is better)
Translates to: FFLPGSACVLLTPTQQRGSGPAF*MGILLR
Trigger: CCGGAGCAGGATCCCCATCCAGAAAGCTGGACCACT...CCCTCTCTGCTGCGTTGGGGTTAGCAGAACACACGCGGATCCGGGGAGAAAGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR CCA 90 bp CCCCAGCAGAGGAAGACATTATACTGTGGTCAGACACTGGTCCAGGGGCAGGGGGAGGGAGCACGGAAGTaGTCCAGCTTTCTGGATGGG +
Preference number: 2 (lower is better)
Translates to: PQQRKTLYCGQTLVQGQGEGARK*SSFLDG
Trigger: CCCATCCAGAAAGCTGGACCACTTCCGTGCTCCCTC...CCCCTGCCCCTGGACCAGTGTCTGACCACAGTATAATGTCTTCCTCTGCTGGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR GCA 90 bp GGCTTCTCTGGGCCCAAATGTCCATTTGAGACTAAGTGGGTCACGTGGCTTGGAGAGAAGGCCTCTGTCTaGACGAGGTCGCCAGGGTGC +
Preference number: 2 (lower is better)
Translates to: GFSGPKCPFETKWVTWLGEKASV*TRSPGC
Trigger: GCACCCTGGCGACCTCGTGCAGACAGAGGCCTTCTC...TCCAAGCCACGTGACCCACTTAGTCTCAAATGGACATTTGGGCCCAGAGAAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR CCA 90 bp CAAAAACCCAGAGTGACCCCAGCAGAGGAAGACATTATACTGTGGTCAGACACTCTGCTACTGCAGCCCTaGGGGGAGCGCTGGCCGCCT +
Preference number: 2 (lower is better)
Translates to: QKPRVTPAEEDIILWSDTLLLQP*GERWPP
Trigger: AGGCGGCCAGCGCTCCCCCCAGGGCTGCAGTAGCAG...AGTGTCTGACCACAGTATAATGTCTTCCTCTGCTGGGGTCACTCTGGGTTTTTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR CCA 90 bp CATTCAGGTCGCCCAGTTTGTTTTCCGGGAGGTCCTCAGGTTTGGTGCAGAGCTAAGGGTGTTGTGAGGTaGGCTCATCCTCGGGGCACG +
Preference number: 2 (lower is better)
Translates to: HSGRPVCFPGGPQVWCRAKGVVR*AHPRGT
Trigger: CGTGCCCCGAGGATGAGCCCACCTCACAACACCCTT...AGCTCTGCACCAAACCTGAGGACCTCCCGGAAAACAAACTGGGCGACCTGAATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162863.8
3UTR CAA 90 bp GCGCCATTCAGGTCGCCCAGTTTGTTTTCCGGGAGGTCCTCAGGTTaGGTGCAGAGCTTTAGGGCACGCGAGATGAACACGTCTAAGTCG +
Preference number: 2 (lower is better)
Translates to: APFRSPSLFSGRSSG*VQSFRAREMNTSKS
Trigger: CGACTTAGACGTGTTCATCTCGCGTGCCCTAAAGCTCTGCACCAAACCTGAGGACCTCCCGGAAAACAAACTGGGCGACCTGAATGGCGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR TCA 90 bp GAGCACGGAAGTGGTCCAGCTTTCTGGATGGGGATCCTGCTCCGGGAGTTTTCCACCAAAAACCCAGAGTaGCCCCAGCAGAGGAAGACA +
Preference number: 2 (lower is better)
Translates to: EHGSGPAFWMGILLREFSTKNPE*PQQRKT
Trigger: TGTCTTCCTCTGCTGGGGTCACTCTGGGTTTTTGGT...GGAAAACTCCCGGAGCAGGATCCCCATCCAGAAAGCTGGACCACTTCCGTGCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR TCA 90 bp CTGTTTCTGACCCCTCTACTCTTGCAGGGCGTAGACTGCTGCCCTAGATCCCTTGATGGCAAGGGACAGTaGGAAGCACTCGGGACCAAG +
Preference number: 2 (lower is better)
Translates to: LFLTPLLLQGVDCCPRSLDGKGQ*EALGTK
Trigger: CTTGGTCCCGAGTGCTTCTCACTGTCCCTTGCCATC...AAGGGATCTAGGGCAGCAGTCTACGCCCTGCAAGAGTAGAGGGGTCAGAAACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR GCA 90 bp CTGTTTCTGACCCCTCTACTCTTGCAGGGCGTAGACTGCTGCCCTAGATCCCTTATGGACGAGTGTGACTaGTCCAGGAAGCGCTCGGAG +
Preference number: 2 (lower is better)
Translates to: LFLTPLLLQGVDCCPRSLMDECD*SRKRSE
Trigger: CTCCGAGCGCTTCCTGGAGCAGTCACACTCGTCCAT...AAGGGATCTAGGGCAGCAGTCTACGCCCTGCAAGAGTAGAGGGGTCAGAAACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR CCA 90 bp GAGAAGGCCTCTGTCTGCACGAGGTCGCCAGGGTGCTCAGAGATGCACGCGCCATTAAATACAGGGAGGTaGCAGGTGAGGGCAATTAAG +
Preference number: 2 (lower is better)
Translates to: EKASVCTRSPGCSEMHAPLNTGR*QVRAIK
Trigger: CTTAATTGCCCTCACCTGCCACCTCCCTGTATTTAA...TGGCGCGTGCATCTCTGAGCACCCTGGCGACCTCGTGCAGACAGAGGCCTTCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR CCA 90 bp AACGGCTTCTCTGGGCCCAAATGTCCATTTGAGACTAAGTGGGTCACGTGGCTTGGGTGGGTGGGAGGCTaGGGTCTGGACAAGAGGGAT +
Preference number: 2 (lower is better)
Translates to: NGFSGPKCPFETKWVTWLGWVGG*GLDKRD
Trigger: ATCCCTCTTGTCCAGACCCCAGCCTCCCACCCACCC...AAGCCACGTGACCCACTTAGTCTCAAATGGACATTTGGGCCCAGAGAAGCCGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR TCA 90 bp GTAGACTGCTGCCCTAGATCCCTTTCTTCCCTTGCACACAATCTCAACAGACCTGCAGCAGAGAGGGGATaGAGGAGTGCGAGGGAGCAC +
Preference number: 2 (lower is better)
Translates to: VDCCPRSLSSLAHNLNRPAAERG*RSAREH
Trigger: GTGCTCCCTCGCACTCCTTCATCCCCTCTCTGCTGC...AGGTCTGTTGAGATTGTGTGCAAGGGAAGAAAGGGATCTAGGGCAGCAGTCTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR TCA 90 bp AGAGTGACCCCAGCAGAGGAAGACATTATACTGTGGTCAGACACTGGTCCAGGGCAGGGAGGTGGCAGGTaGGGGCAATTAAGCACTTGG +
Preference number: 2 (lower is better)
Translates to: RVTPAEEDIILWSDTGPGQGGGR*GQLSTW
Trigger: CCAAGTGCTTAATTGCCCTCACCTGCCACCTCCCTG...CCCTGGACCAGTGTCTGACCACAGTATAATGTCTTCCTCTGCTGGGGTCACTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR TCA 90 bp TCTTTCTGGGTTTCTTGTTCCAGGGTTGCTAGCTCTCAGGCCATTCCTTTAGGGCTCGGAGCTGCTCTGTaGGTCCTTGCGTGGGTCCAC +
Preference number: 2 (lower is better)
Translates to: SFWVSCSRVASSQAIPLGLGAAL*VLAWVH
Trigger: GTGGACCCACGCAAGGACTCACAGAGCAGCTCCGAG...CCCTAAAGGAATGGCCTGAGAGCTAGCAACCCTGGAACAAGAAACCCAGAAAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR CAA 90 bp CGTGGCTTGGAAACTGTCTGCAAGCTGTTTCTGACCCCTCTACTCTaGCAGGGCGTAGACTGCTGCCCTAGATCCCTTTCTTCCCTTGCA +
Preference number: 2 (lower is better)
Translates to: RGLETVCKLFLTPLL*QGVDCCPRSLSSLA
Trigger: TGCAAGGGAAGAAAGGGATCTAGGGCAGCAGTCTACGCCCTGCAAGAGTAGAGGGGTCAGAAACAGCTTGCAGACAGTTTCCAAGCCACG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR GCA 90 bp GCTTCTCTGGGCCCAAATGTCCATTTGAGACTAAGTGGGTCACGTGGCTTGGAATCTGGATGGGGATCCTaGTCCGGGAGTTTTCCCGCA +
Preference number: 2 (lower is better)
Translates to: ASLGPNVHLRLSGSRGLESGWGS*SGSFPA
Trigger: TGCGGGAAAACTCCCGGAGCAGGATCCCCATCCAGA...TTCCAAGCCACGTGACCCACTTAGTCTCAAATGGACATTTGGGCCCAGAGAAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR GCA 90 bp CTTCCCTTCGATGGGAAACTGACGGCTCCCAGCCAGGCTCGGTTCAAACCCGCTATCCCTTTCTTCCCTTaGACACAATCTCAACAGACC +
Preference number: 2 (lower is better)
Translates to: LPFDGKLTAPSQARFKPAIPFFP*TQSQQT
Trigger: GGTCTGTTGAGATTGTGTGCAAGGGAAGAAAGGGAT...AGCGGGTTTGAACCGAGCCTGGCTGGGAGCCGTCAGTTTCCCATCGAAGGGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR GCA 90 bp CTGTTTCTGACCCCTCTACTCTTGCAGGGCGTAGACTGCTGCCCTAGATCCCTTTGCTCTGTGAGTCCTTaGGTGGGTCCACCTGAACAT +
Preference number: 2 (lower is better)
Translates to: LFLTPLLLQGVDCCPRSLCSVSP*VGPPEH
Trigger: ATGTTCAGGTGGACCCACGCAAGGACTCACAGAGCA...AAGGGATCTAGGGCAGCAGTCTACGCCCTGCAAGAGTAGAGGGGTCAGAAACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR GCA 90 bp TCCAGAAAGAGGCTTGCTGGCTCATCCTCACGTGACACAGGGTCTGCTGCTACTCGATCTCGTCCTCAATaGGGAAAGGGTGTTGTGAGG +
Preference number: 2 (lower is better)
Translates to: SRKRLAGSSSRDTGSAATRSRPQ*GKGVVR
Trigger: CCTCACAACACCCTTTCCGCATTGAGGACGAGATCG...AGTAGCAGCAGACCCTGTGTCACGTGAGGATGAGCCAGCAAGCCTCTTTCTGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162863.8
3UTR-3UTR CCA 90 bp AACGGCTTCTCTGGGCCCAAATGTCCATTTGAGACTAAGTGGGTCACGTGGCTTGTCCAGCTTTCTGGATaGGGATCCTGCTCCGGGAGT +
Preference number: 2 (lower is better)
Translates to: NGFSGPKCPFETKWVTWLVQLSG*GSCSGS
Trigger: ACTCCCGGAGCAGGATCCCCATCCAGAAAGCTGGAC...AAGCCACGTGACCCACTTAGTCTCAAATGGACATTTGGGCCCAGAGAAGCCGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR CCA 90 bp GGACAGATGGCAAGGGACAGTGAGAAGCACTCGGGACCAAGTTTTCTGACCAAAGAGGGAGCACGGAAGTaGTCCAGCTTTCTGGATGGG +
Preference number: 2 (lower is better)
Translates to: GQMARDSEKHSGPSFLTKEGARK*SSFLDG
Trigger: CCCATCCAGAAAGCTGGACCACTTCCGTGCTCCCTC...TTTGGTCAGAAAACTTGGTCCCGAGTGCTTCTCACTGTCCCTTGCCATCTGTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR CCA 90 bp GAGAAGGCCTCTGTCTGCACGAGGTCGCCAGGGTGCTCAGAGATGCACGCGCCAGGGCAATTAAGCACTTaGAGAGTCATAGAACTATGT +
Preference number: 2 (lower is better)
Translates to: EKASVCTRSPGCSEMHAPGQLST*RVIELC
Trigger: ACATAGTTCTATGACTCTCCAAGTGCTTAATTGCCC...TGGCGCGTGCATCTCTGAGCACCCTGGCGACCTCGTGCAGACAGAGGCCTTCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR GCA 90 bp GAGCACGGAAGTGGTCCAGCTTTCTGGATGGGGATCCTGCTCCGGGAGTTTTCCATCCCTTTCTTCCCTTaGACACAATCTCAACAGACC +
Preference number: 2 (lower is better)
Translates to: EHGSGPAFWMGILLREFSIPFFP*TQSQQT
Trigger: GGTCTGTTGAGATTGTGTGCAAGGGAAGAAAGGGAT...GGAAAACTCCCGGAGCAGGATCCCCATCCAGAAAGCTGGACCACTTCCGTGCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR GCA 90 bp CTTCCCTTCGATGGGAAACTGACGGCTCCCAGCCAGGCTCGGTTCAAACCCGCTAGGGATTCTTGTGATTaGTGTCTTCAAACTCACCCA +
Preference number: 2 (lower is better)
Translates to: LPFDGKLTAPSQARFKPARDSCD*CLQTHP
Trigger: TGGGTGAGTTTGAAGACAGCAATCACAAGAATCCCT...AGCGGGTTTGAACCGAGCCTGGCTGGGAGCCGTCAGTTTCCCATCGAAGGGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR GCA 90 bp GTAGACTGCTGCCCTAGATCCCTTTCTTCCCTTGCACACAATCTCAACAGACCTGGTCCTCAGGTTTGGTaGAGAGCTTTAGGGCACGCG +
Preference number: 2 (lower is better)
Translates to: VDCCPRSLSSLAHNLNRPGPQVW*RALGHA
Trigger: CGCGTGCCCTAAAGCTCTGCACCAAACCTGAGGACC...AGGTCTGTTGAGATTGTGTGCAAGGGAAGAAAGGGATCTAGGGCAGCAGTCTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR CCA 90 bp CCCTCGGAGGACAAATGGCACATAAGGAGTGGTGTGCATTGCATTGTCTTAAAGACTGTGGTCAGACACTaGTCCAGGGGCAGGGGCTTG +
Preference number: 2 (lower is better)
Translates to: PSEDKWHIRSGVHCIVLKTVVRH*SRGRGL
Trigger: CAAGCCCCTGCCCCTGGACCAGTGTCTGACCACAGT...CTTTAAGACAATGCAATGCACACCACTCCTTATGTGCCATTTGTCCTCCGAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000091851.10
ENSMUST00000162863.8
3UTR-3UTR CCA 90 bp CCCCAGCAGAGGAAGACATTATACTGTGGTCAGACACTGGTCCAGGGGCAGGGGTTAAATACAGGGAGGTaGCAGGTGAGGGCAATTAAG +
Preference number: 2 (lower is better)
Translates to: PQQRKTLYCGQTLVQGQGLNTGR*QVRAIK
Trigger: CTTAATTGCCCTCACCTGCCACCTCCCTGTATTTAA...CCCCTGCCCCTGGACCAGTGTCTGACCACAGTATAATGTCTTCCTCTGCTGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR CCA 90 bp AACGGCTTCTCTGGGCCCAAATGTCCATTTGAGACTAAGTGGGTCACGTGGCTTTGGGAGGCTGGGGTCTaGACAAGAGGGATTCTTGTG +
Preference number: 2 (lower is better)
Translates to: NGFSGPKCPFETKWVTWLWEAGV*TRGILV
Trigger: CACAAGAATCCCTCTTGTCCAGACCCCAGCCTCCCA...AAGCCACGTGACCCACTTAGTCTCAAATGGACATTTGGGCCCAGAGAAGCCGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR CCA 90 bp GAATCTTCCCTCCTAGCTCATTTGTTTTTATGGAAGGCACCTTATTGCTTTCTCCGCGCTGCACCTCGCTaGCGTCCTGGCACCGGTCAG +
Preference number: 2 (lower is better)
Translates to: ESSLLAHLFLWKAPYCFLRAAPR*RPGTGQ
Trigger: CTGACCGGTGCCAGGACGCCAGCGAGGTGCAGCGCG...GAGAAAGCAATAAGGTGCCTTCCATAAAAACAAATGAGCTAGGAGGGAAGATTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR CCA 90 bp TCAACAGACCAGCTAGACCTCTTGTGGGTATCTTTGGGATGTTGGCAGGGAGAGAGAGCTGGCTCTGACTaGCAGCCATCAGCACGATGT +
Preference number: 2 (lower is better)
Translates to: STDQLDLLWVSLGCWQGERAGSD*QPSARC
Trigger: ACATCGTGCTGATGGCTGCCAGTCAGAGCCAGCTCT...CTCTCCCTGCCAACATCCCAAAGATACCCACAAGAGGTCTAGCTGGTCTGTTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162863.8
3UTR-3UTR TCA 90 bp CTGTTTCTGACCCCTCTACTCTTGCAGGGCGTAGACTGCTGCCCTAGATCCCTTTTCCATCTCCATAGCTaGCTCTTTGGGACACTTGAG +
Preference number: 2 (lower is better)
Translates to: LFLTPLLLQGVDCCPRSLFHLHS*LFGTLE
Trigger: CTCAAGTGTCCCAAAGAGTCAGCTATGGAGATGGAA...AAGGGATCTAGGGCAGCAGTCTACGCCCTGCAAGAGTAGAGGGGTCAGAAACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000091851.10
ENSMUST00000162863.8
3UTR-3UTR GCA 90 bp CAAACTCACCCATGTACAATATCTATTGGGGAACGAGTCAGGAAAGTGCATAGGACGAGGTCGCCAGGGTaGTCAGAGATGCACGCGCCA +
Preference number: 2 (lower is better)
Translates to: QTHPCTISIGERVRKVHRTRSPG*SEMHAP
Trigger: TGGCGCGTGCATCTCTGAGCACCCTGGCGACCTCGT...CCTATGCACTTTCCTGACTCGTTCCCCAATAGATATTGTACATGGGTGAGTTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR CCA 90 bp CCCTCGGAGGACAAATGGCACATAAGGAGTGGTGTGCATTGCATTGTCTTAAAGGAGGGAGCACGGAAGTaGTCCAGCTTTCTGGATGGG +
Preference number: 2 (lower is better)
Translates to: PSEDKWHIRSGVHCIVLKEGARK*SSFLDG
Trigger: CCCATCCAGAAAGCTGGACCACTTCCGTGCTCCCTC...CTTTAAGACAATGCAATGCACACCACTCCTTATGTGCCATTTGTCCTCCGAGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091851.10
ENSMUST00000162863.8
3UTR-3UTR CCA 90 bp TCTTTCTGGGTTTCTTGTTCCAGGGTTGCTAGCTCTCAGGCCATTCCTTTAGGGGGAGGTCCTCAGGTTTaGTGCAGAGCTTTAGGGCAC +
Preference number: 2 (lower is better)
Translates to: SFWVSCSRVASSQAIPLGGGPQV*CRALGH
Trigger: GTGCCCTAAAGCTCTGCACCAAACCTGAGGACCTCC...CCCTAAAGGAATGGCCTGAGAGCTAGCAACCCTGGAACAAGAAACCCAGAAAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR CCA 90 bp AAAAGTAAAGCTTCCCTCGGAGGACAAATGGCACATAAGGAGTGGTGTGCATTGGAGCAGCTTGCGCAGTaGCCTCTTCACCTCCCAGGT +
Preference number: 2 (lower is better)
Translates to: KSKASLGGQMAHKEWCALEQLAQ*PLHLPG
Trigger: ACCTGGGAGGTGAAGAGGCCACTGCGCAAGCTGCTC...CAATGCACACCACTCCTTATGTGCCATTTGTCCTCCGAGGGAAGCTTTACTTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162863.8
3UTR-3UTR TCA 90 bp GTCAGACACTGGTCCAGGGGCAGGGGCTTGGGACACAGGCTTCTGACACCATTAACTGCTCTGAAGTTATaGAGCAATAACTTCAGACTG +
Preference number: 2 (lower is better)
Translates to: VRHWSRGRGLGHRLLTPLTALKL*SNNFRL
Trigger: CAGTCTGAAGTTATTGCTTCATAACTTCAGAGCAGT...TAATGGTGTCAGAAGCCTGTGTCCCAAGCCCCTGCCCCTGGACCAGTGTCTGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR GCA 90 bp AAAAGTAAAGCTTCCCTCGGAGGACAAATGGCACATAAGGAGTGGTGTGCATTGTCTGGATGGGGATCCTaGTCCGGGAGTTTTCCCGCA +
Preference number: 2 (lower is better)
Translates to: KSKASLGGQMAHKEWCALSGWGS*SGSFPA
Trigger: TGCGGGAAAACTCCCGGAGCAGGATCCCCATCCAGA...CAATGCACACCACTCCTTATGTGCCATTTGTCCTCCGAGGGAAGCTTTACTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000091851.10
ENSMUST00000162863.8
3UTR-3UTR GCA 90 bp GCTTCTCTGGGCCCAAATGTCCATTTGAGACTAAGTGGGTCACGTGGCTTGGAAGGCTTGGAAACTGTCTaGAAGCTGTTTCTGACCCCT +
Preference number: 2 (lower is better)
Translates to: ASLGPNVHLRLSGSRGLEGLETV*KLFLTP
Trigger: AGGGGTCAGAAACAGCTTGCAGACAGTTTCCAAGCC...TTCCAAGCCACGTGACCCACTTAGTCTCAAATGGACATTTGGGCCCAGAGAAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR CCA 90 bp AAAAGTAAAGCTTCCCTCGGAGGACAAATGGCACATAAGGAGTGGTGTGCATTGGTCCAGCTTTCTGGATaGGGATCCTGCTCCGGGAGT +
Preference number: 2 (lower is better)
Translates to: KSKASLGGQMAHKEWCALVQLSG*GSCSGS
Trigger: ACTCCCGGAGCAGGATCCCCATCCAGAAAGCTGGAC...CAATGCACACCACTCCTTATGTGCCATTTGTCCTCCGAGGGAAGCTTTACTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091851.10
ENSMUST00000162863.8
3UTR-3UTR CCA 90 bp GAGCACGGAAGTGGTCCAGCTTTCTGGATGGGGATCCTGCTCCGGGAGTTTTCCGGGCAATTAAGCACTTaGAGAGTCATAGAACTATGT +
Preference number: 2 (lower is better)
Translates to: EHGSGPAFWMGILLREFSGQLST*RVIELC
Trigger: ACATAGTTCTATGACTCTCCAAGTGCTTAATTGCCC...GGAAAACTCCCGGAGCAGGATCCCCATCCAGAAAGCTGGACCACTTCCGTGCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR CCA 90 bp GGACAGATGGCAAGGGACAGTGAGAAGCACTCGGGACCAAGTTTTCTGACCAAACTTGTCCAGGTAGGATaGAGACCCCACTTTGTAGTC +
Preference number: 2 (lower is better)
Translates to: GQMARDSEKHSGPSFLTKLVQVG*RPHFVV
Trigger: GACTACAAAGTGGGGTCTCCATCCTACCTGGACAAG...TTTGGTCAGAAAACTTGGTCCCGAGTGCTTCTCACTGTCCCTTGCCATCTGTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR TCA 90 bp GTAGACTGCTGCCCTAGATCCCTTTCTTCCCTTGCACACAATCTCAACAGACCTCGGGACCAAGTTTTCTaGCCAAAAACCCAGAGTGAC +
Preference number: 2 (lower is better)
Translates to: VDCCPRSLSSLAHNLNRPRDQVF*PKTQSD
Trigger: GTCACTCTGGGTTTTTGGTCAGAAAACTTGGTCCCG...AGGTCTGTTGAGATTGTGTGCAAGGGAAGAAAGGGATCTAGGGCAGCAGTCTAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR TCA 90 bp ACAAGAGGGATTCTTGTGATTGCTGTCTTCAAACTCACCCATGTACAATATCTACCTCCCAGGTGCTGCTaGCGAAGGACGGCATCACCC +
Preference number: 2 (lower is better)
Translates to: TRGILVIAVFKLTHVQYLPPRCC*RRTASP
Trigger: GGGTGATGCCGTCCTTCGTCAGCAGCACCTGGGAGG...TAGATATTGTACATGGGTGAGTTTGAAGACAGCAATCACAAGAATCCCTCTTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162863.8
3UTR-3UTR TCA 90 bp TCTTTCTGGGTTTCTTGTTCCAGGGTTGCTAGCTCTCAGGCCATTCCTTTAGGGGACACTACTGAAGGATaGTGGGTCTTCTGTGGAATC +
Preference number: 2 (lower is better)
Translates to: SFWVSCSRVASSQAIPLGDTTEG*WVFCGI
Trigger: GATTCCACAGAAGACCCATCATCCTTCAGTAGTGTC...CCCTAAAGGAATGGCCTGAGAGCTAGCAACCCTGGAACAAGAAACCCAGAAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR GCA 90 bp CAAAAACCCAGAGTGACCCCAGCAGAGGAAGACATTATACTGTGGTCAGACACTGGCTTGGAAACTGTCTaGAAGCTGTTTCTGACCCCT +
Preference number: 2 (lower is better)
Translates to: QKPRVTPAEEDIILWSDTGLETV*KLFLTP
Trigger: AGGGGTCAGAAACAGCTTGCAGACAGTTTCCAAGCC...AGTGTCTGACCACAGTATAATGTCTTCCTCTGCTGGGGTCACTCTGGGTTTTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR GCA 90 bp ACAAGAGGGATTCTTGTGATTGCTGTCTTCAAACTCACCCATGTACAATATCTAACGAGGTCGCCAGGGTaGTCAGAGATGCACGCGCCA +
Preference number: 2 (lower is better)
Translates to: TRGILVIAVFKLTHVQYLTRSPG*SEMHAP
Trigger: TGGCGCGTGCATCTCTGAGCACCCTGGCGACCTCGT...TAGATATTGTACATGGGTGAGTTTGAAGACAGCAATCACAAGAATCCCTCTTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR GCA 90 bp ATCTTCCCTCCTAGCTCATTTGTTTTTATGGAAGGCACCTTATTGCTTTCTCTAGAGAAGGCCTCTGTCTaGACGAGGTCGCCAGGGTGC +
Preference number: 2 (lower is better)
Translates to: IFPPSSFVFMEGTLLLSLEKASV*TRSPGC
Trigger: GCACCCTGGCGACCTCGTGCAGACAGAGGCCTTCTC...TAGAGAAAGCAATAAGGTGCCTTCCATAAAAACAAATGAGCTAGGAGGGAAGAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR CCA 90 bp TGCTGTCTTCAAACTCACCCATGTACAATATCTATTGGGGAACGAGTCAGGAAAGTCCAGCTTTCTGGATaGGGATCCTGCTCCGGGAGT +
Preference number: 2 (lower is better)
Translates to: CCLQTHPCTISIGERVRKVQLSG*GSCSGS
Trigger: ACTCCCGGAGCAGGATCCCCATCCAGAAAGCTGGAC...TTTCCTGACTCGTTCCCCAATAGATATTGTACATGGGTGAGTTTGAAGACAGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR CCA 90 bp TGCTGTCTTCAAACTCACCCATGTACAATATCTATTGGGGAACGAGTCAGGAAAAGTGGTCCAGCTTTCTaGATGGGGATCCTGCTCCGG +
Preference number: 2 (lower is better)
Translates to: CCLQTHPCTISIGERVRKSGPAF*MGILLR
Trigger: CCGGAGCAGGATCCCCATCCAGAAAGCTGGACCACT...TTTCCTGACTCGTTCCCCAATAGATATTGTACATGGGTGAGTTTGAAGACAGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR CCA 90 bp GTGGAGGCTGTAGGCACAGGCCTGGGAGATGTTTACCTCAATTTACCCACAGCCCCTAGTTTATCTTTCTaGGTTTCTTGTTCCAGGGTT +
Preference number: 2 (lower is better)
Translates to: VEAVGTGLGDVYLNLPTAPSLSF*VSCSRV
Trigger: AACCCTGGAACAAGAAACCCAGAAAGATAAACTAGG...GGCTGTGGGTAAATTGAGGTAAACATCTCCCAGGCCTGTGCCTACAGCCTCCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091851.10
ENSMUST00000162863.8
3UTR-3UTR TCA 90 bp AAAAGTAAAGCTTCCCTCGGAGGACAAATGGCACATAAGGAGTGGTGTGCATTGCGGGACCAAGTTTTCTaGCCAAAAACCCAGAGTGAC +
Preference number: 2 (lower is better)
Translates to: KSKASLGGQMAHKEWCALRDQVF*PKTQSD
Trigger: GTCACTCTGGGTTTTTGGTCAGAAAACTTGGTCCCG...CAATGCACACCACTCCTTATGTGCCATTTGTCCTCCGAGGGAAGCTTTACTTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000091851.10
ENSMUST00000162863.8
3UTR-3UTR TCA 90 bp TCTTGTGATTGCTGTCTTCAAACTCACCCATGTACAATATCTATTGGGGAACGAGATGGCAAGGGACAGTaGGAAGCACTCGGGACCAAG +
Preference number: 2 (lower is better)
Translates to: SCDCCLQTHPCTISIGERDGKGQ*EALGTK
Trigger: CTTGGTCCCGAGTGCTTCTCACTGTCCCTTGCCATC...TCGTTCCCCAATAGATATTGTACATGGGTGAGTTTGAAGACAGCAATCACAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR TCA 90 bp GGAATCTTCCCTCCTAGCTCATTTGTTTTTATGGAAGGCACCTTATTGCTTTCTGATGGCAAGGGACAGTaGGAAGCACTCGGGACCAAG +
Preference number: 2 (lower is better)
Translates to: GIFPPSSFVFMEGTLLLSDGKGQ*EALGTK
Trigger: CTTGGTCCCGAGTGCTTCTCACTGTCCCTTGCCATC...AGAAAGCAATAAGGTGCCTTCCATAAAAACAAATGAGCTAGGAGGGAAGATTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR GCA 90 bp GGAATCTTCCCTCCTAGCTCATTTGTTTTTATGGAAGGCACCTTATTGCTTTCTTCTGGATGGGGATCCTaGTCCGGGAGTTTTCCCGCA +
Preference number: 2 (lower is better)
Translates to: GIFPPSSFVFMEGTLLLSSGWGS*SGSFPA
Trigger: TGCGGGAAAACTCCCGGAGCAGGATCCCCATCCAGA...AGAAAGCAATAAGGTGCCTTCCATAAAAACAAATGAGCTAGGAGGGAAGATTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR GCA 90 bp ACAAGAGGGATTCTTGTGATTGCTGTCTTCAAACTCACCCATGTACAATATCTAGAGGGGATGAAGGAGTaGGAGGGAGCACGGAAGTGG +
Preference number: 2 (lower is better)
Translates to: TRGILVIAVFKLTHVQYLEGMKE*EGARKW
Trigger: CCACTTCCGTGCTCCCTCGCACTCCTTCATCCCCTC...TAGATATTGTACATGGGTGAGTTTGAAGACAGCAATCACAAGAATCCCTCTTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR GCA 90 bp AACGGCTTCTCTGGGCCCAAATGTCCATTTGAGACTAAGTGGGTCACGTGGCTTCAAATGAGCAATTTGTaGCAAGAACATTTGGTCCCG +
Preference number: 2 (lower is better)
Translates to: NGFSGPKCPFETKWVTWLQMSNL*QEHLVP
Trigger: CGGGACCAAATGTTCTTGGCACAAATTGCTCATTTG...AAGCCACGTGACCCACTTAGTCTCAAATGGACATTTGGGCCCAGAGAAGCCGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR CCA 90 bp TGCTGTCTTCAAACTCACCCATGTACAATATCTATTGGGGAACGAGTCAGGAAAAGACCTTCCCTTCGATaGGAAACTGACGGCTCCCAG +
Preference number: 2 (lower is better)
Translates to: CCLQTHPCTISIGERVRKRPSLR*ETDGSQ
Trigger: CTGGGAGCCGTCAGTTTCCCATCGAAGGGAAGGTCT...TTTCCTGACTCGTTCCCCAATAGATATTGTACATGGGTGAGTTTGAAGACAGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR CCA 90 bp TCAACAGACCAGCTAGACCTCTTGTGGGTATCTTTGGGATGTTGGCAGGGAGAGTCCCTTTCTTTGTCTTaGGTTTTCCATCTCCATAGC +
Preference number: 2 (lower is better)
Translates to: STDQLDLLWVSLGCWQGESLSLS*VFHLHS
Trigger: GCTATGGAGATGGAAAACCCAAGACAAAGAAAGGGA...CTCTCCCTGCCAACATCCCAAAGATACCCACAAGAGGTCTAGCTGGTCTGTTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091851.10
ENSMUST00000162863.8
3UTR CAA 90 bp ATTCTTGTGATTGCTGTCTTCAAACTCACCCATGTACAATATCTATaGGGGAACGAGTCAGGAAAGTGCATAGGGCATGCAGGTGGAGGC +
Preference number: 2 (lower is better)
Translates to: ILVIAVFKLTHVQYL*GNESGKCIGHAGGG
Trigger: GCCTCCACCTGCATGCCCTATGCACTTTCCTGACTCGTTCCCCAATAGATATTGTACATGGGTGAGTTTGAAGACAGCAATCACAAGAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR TCA 90 bp AAGAGGGATTCTTGTGATTGCTGTCTTCAAACTCACCCATGTACAATATCTATTCTCCATGGACGAGTGTaGCTGCTCCAGGAAGCGCTC +
Preference number: 2 (lower is better)
Translates to: KRDSCDCCLQTHPCTISILHGRV*LLQEAL
Trigger: GAGCGCTTCCTGGAGCAGTCACACTCGTCCATGGAG...AATAGATATTGTACATGGGTGAGTTTGAAGACAGCAATCACAAGAATCCCTCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR GCA 90 bp AAGAGGGATTCTTGTGATTGCTGTCTTCAAACTCACCCATGTACAATATCTATTGAGGGGATGAAGGAGTaGGAGGGAGCACGGAAGTGG +
Preference number: 2 (lower is better)
Translates to: KRDSCDCCLQTHPCTISIEGMKE*EGARKW
Trigger: CCACTTCCGTGCTCCCTCGCACTCCTTCATCCCCTC...AATAGATATTGTACATGGGTGAGTTTGAAGACAGCAATCACAAGAATCCCTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR CCA 90 bp CAAAAACCCAGAGTGACCCCAGCAGAGGAAGACATTATACTGTGGTCAGACACTCTTAAGCTACCAGGGTaGGACTACTTTGAATCCCTT +
Preference number: 2 (lower is better)
Translates to: QKPRVTPAEEDIILWSDTLKLPG*DYFESL
Trigger: AAGGGATTCAAAGTAGTCCCACCCTGGTAGCTTAAG...AGTGTCTGACCACAGTATAATGTCTTCCTCTGCTGGGGTCACTCTGGGTTTTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000091851.10
ENSMUST00000162863.8
3UTR-3UTR TCA 90 bp ACTTGGAGAGTCATAGAACTATGTCTGGTGACTAGGAGAAAGAAACTAGTTCTGACCAAAAACCCAGAGTaGCCCCAGCAGAGGAAGACA +
Preference number: 2 (lower is better)
Translates to: TWRVIELCLVTRRKKLVLTKNPE*PQQRKT
Trigger: TGTCTTCCTCTGCTGGGGTCACTCTGGGTTTTTGGT...CAGAACTAGTTTCTTTCTCCTAGTCACCAGACATAGTTCTATGACTCTCCAAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR GCA 90 bp CAAAAACCCAGAGTGACCCCAGCAGAGGAAGACATTATACTGTGGTCAGACACTAGGGATTCTTGTGATTaGTGTCTTCAAACTCACCCA +
Preference number: 2 (lower is better)
Translates to: QKPRVTPAEEDIILWSDTRDSCD*CLQTHP
Trigger: TGGGTGAGTTTGAAGACAGCAATCACAAGAATCCCT...AGTGTCTGACCACAGTATAATGTCTTCCTCTGCTGGGGTCACTCTGGGTTTTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR CCA 90 bp ATCTTCCCTCCTAGCTCATTTGTTTTTATGGAAGGCACCTTATTGCTTTCTCTAAGACCTTCCCTTCGATaGGAAACTGACGGCTCCCAG +
Preference number: 2 (lower is better)
Translates to: IFPPSSFVFMEGTLLLSLRPSLR*ETDGSQ
Trigger: CTGGGAGCCGTCAGTTTCCCATCGAAGGGAAGGTCT...TAGAGAAAGCAATAAGGTGCCTTCCATAAAAACAAATGAGCTAGGAGGGAAGAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR CCA 90 bp TCTTTCTGGGTTTCTTGTTCCAGGGTTGCTAGCTCTCAGGCCATTCCTTTAGGGGGGCAATTAAGCACTTaGAGAGTCATAGAACTATGT +
Preference number: 2 (lower is better)
Translates to: SFWVSCSRVASSQAIPLGGQLST*RVIELC
Trigger: ACATAGTTCTATGACTCTCCAAGTGCTTAATTGCCC...CCCTAAAGGAATGGCCTGAGAGCTAGCAACCCTGGAACAAGAAACCCAGAAAGA
46% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR GCA 90 bp AGCACTTGGAGAGTCATAGAACTATGTCTGGTGACTAGGAGAAAGAAACTAGTTGGCTTGGAAACTGTCTaGAAGCTGTTTCTGACCCCT +
Preference number: 2 (lower is better)
Translates to: STWRVIELCLVTRRKKLVGLETV*KLFLTP
Trigger: AGGGGTCAGAAACAGCTTGCAGACAGTTTCCAAGCC...AACTAGTTTCTTTCTCCTAGTCACCAGACATAGTTCTATGACTCTCCAAGTGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR CCA 90 bp ACAAGAGGGATTCTTGTGATTGCTGTCTTCAAACTCACCCATGTACAATATCTATTCCGCAGAGGGCTTTaGACTGACTCCAAGTCTGTC +
Preference number: 2 (lower is better)
Translates to: TRGILVIAVFKLTHVQYLFRRGL*TDSKSV
Trigger: GACAGACTTGGAGTCAGTCCAAAGCCCTCTGCGGAA...TAGATATTGTACATGGGTGAGTTTGAAGACAGCAATCACAAGAATCCCTCTTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091851.10
ENSMUST00000162863.8
3UTR-3UTR CCA 90 bp GAATCTTCCCTCCTAGCTCATTTGTTTTTATGGAAGGCACCTTATTGCTTTCTCCAGCTAGACCTCTTGTaGGTATCTTTGGGATGTTGG +
Preference number: 2 (lower is better)
Translates to: ESSLLAHLFLWKAPYCFLQLDLL*VSLGCW
Trigger: CCAACATCCCAAAGATACCCACAAGAGGTCTAGCTG...GAGAAAGCAATAAGGTGCCTTCCATAAAAACAAATGAGCTAGGAGGGAAGATTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000091851.10
ENSMUST00000162863.8
3UTR-3UTR CCA 90 bp ATCTTCCCTCCTAGCTCATTTGTTTTTATGGAAGGCACCTTATTGCTTTCTCTACTTGTCCAGGTAGGATaGAGACCCCACTTTGTAGTC +
Preference number: 2 (lower is better)
Translates to: IFPPSSFVFMEGTLLLSLLVQVG*RPHFVV
Trigger: GACTACAAAGTGGGGTCTCCATCCTACCTGGACAAG...TAGAGAAAGCAATAAGGTGCCTTCCATAAAAACAAATGAGCTAGGAGGGAAGAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR GCA 90 bp TCTTGTGATTGCTGTCTTCAAACTCACCCATGTACAATATCTATTGGGGAACGAATCCCTTTCTTCCCTTaGACACAATCTCAACAGACC +
Preference number: 2 (lower is better)
Translates to: SCDCCLQTHPCTISIGERIPFFP*TQSQQT
Trigger: GGTCTGTTGAGATTGTGTGCAAGGGAAGAAAGGGAT...TCGTTCCCCAATAGATATTGTACATGGGTGAGTTTGAAGACAGCAATCACAAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR TCA 90 bp TGCTGTCTTCAAACTCACCCATGTACAATATCTATTGGGGAACGAGTCAGGAAAACTGCTCTGAAGTTATaGAGCAATAACTTCAGACTG +
Preference number: 2 (lower is better)
Translates to: CCLQTHPCTISIGERVRKTALKL*SNNFRL
Trigger: CAGTCTGAAGTTATTGCTTCATAACTTCAGAGCAGT...TTTCCTGACTCGTTCCCCAATAGATATTGTACATGGGTGAGTTTGAAGACAGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR CAA 90 bp GGAATCTTCCCTCCTAGCTCATTTGTTTTTATGGAAGGCACCTTATaGCTTTCTCTACAAATGAGCAATTTGTGCCAAGAACATTTGGTC +
Preference number: 2 (lower is better)
Translates to: GIFPPSSFVFMEGTL*LSLQMSNLCQEHLV
Trigger: GACCAAATGTTCTTGGCACAAATTGCTCATTTGTAGAGAAAGCAATAAGGTGCCTTCCATAAAAACAAATGAGCTAGGAGGGAAGATTCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR TCA 90 bp AGCACTTGGAGAGTCATAGAACTATGTCTGGTGACTAGGAGAAAGAAACTAGTTACTGCTCTGAAGTTATaGAGCAATAACTTCAGACTG +
Preference number: 2 (lower is better)
Translates to: STWRVIELCLVTRRKKLVTALKL*SNNFRL
Trigger: CAGTCTGAAGTTATTGCTTCATAACTTCAGAGCAGT...AACTAGTTTCTTTCTCCTAGTCACCAGACATAGTTCTATGACTCTCCAAGTGCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR GCA 90 bp ACAAGAGGGATTCTTGTGATTGCTGTCTTCAAACTCACCCATGTACAATATCTAAGGGATTCTTGTGATTaGTGTCTTCAAACTCACCCA +
Preference number: 2 (lower is better)
Translates to: TRGILVIAVFKLTHVQYLRDSCD*CLQTHP
Trigger: TGGGTGAGTTTGAAGACAGCAATCACAAGAATCCCT...TAGATATTGTACATGGGTGAGTTTGAAGACAGCAATCACAAGAATCCCTCTTGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR GCA 72 bp TCCGCCAGCGGTGTAGAGCCTGCACGTGGATCGCGCTaGACCTCGCTGGCGTCCTGGCACCGGTCAGGCCGC +
Preference number: 3 (lower is better)
Translates to: SASGVEPARGSR*TSLASWHRSGR
Trigger: GCGGCCTGACCGGTGCCAGGACGCCAGCGAGGTGCAGCGCGATCCACGTGCAGGCTCTACACCGCTGGCGGA
72% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR CCA 72 bp CCTGCACGTGGATCGCGCTGCACCTCGCTGGCGTCCTaGCACCGGTCAGGCCGCCATTCCAGATCTGAGGAC +
Preference number: 3 (lower is better)
Translates to: PARGSRCTSLAS*HRSGRHSRSED
Trigger: GTCCTCAGATCTGGAATGGCGGCCTGACCGGTGCCAGGACGCCAGCGAGGTGCAGCGCGATCCACGTGCAGG
68% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR CCA 72 bp CTGAACATCCTCCGCCAGCGGTGTAGAGCCTGCACGTaGATCGCGCTGCACCTCGCTGGCGTCCTGGCACCG +
Preference number: 3 (lower is better)
Translates to: LNILRQRCRACT*IALHLAGVLAP
Trigger: CGGTGCCAGGACGCCAGCGAGGTGCAGCGCGATCCACGTGCAGGCTCTACACCGCTGGCGGAGGATGTTCAG
68% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR CCA 72 bp CCTCACGTGACACAGGGTCTGCTGCTACTGCAGCCCTaGGGGGAGCGCTGGCCGCCTGCTTCCAGTGCGACA +
Preference number: 3 (lower is better)
Translates to: PHVTQGLLLLQP*GERWPPASSAT
Trigger: TGTCGCACTGGAAGCAGGCGGCCAGCGCTCCCCCCAGGGCTGCAGTAGCAGCAGACCCTGTGTCACGTGAGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR GCA 72 bp GTCCACCTGAACATCCTCCGCCAGCGGTGTAGAGCCTaGACGTGGATCGCGCTGCACCTCGCTGGCGTCCTG +
Preference number: 3 (lower is better)
Translates to: VHLNILRQRCRA*TWIALHLAGVL
Trigger: CAGGACGCCAGCGAGGTGCAGCGCGATCCACGTGCAGGCTCTACACCGCTGGCGGAGGATGTTCAGGTGGAC
67% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR CCA 72 bp AGGACCGTCCATAGTCGGCCTCGAAGGCGCGCTCCATaGACGAGTGTGACTGCTCCAGGAAGCGCTCGGAGC +
Preference number: 3 (lower is better)
Translates to: RTVHSRPRRRAP*TSVTAPGSARS
Trigger: GCTCCGAGCGCTTCCTGGAGCAGTCACACTCGTCCATGGAGCGCGCCTTCGAGGCCGACTATGGACGGTCCT
65% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR TCA 72 bp TCGGAGCTGCTCTGTGAGTCCTTGCGTGGGTCCACCTaGACATCCTCCGCCAGCGGTGTAGAGCCTGCACGT +
Preference number: 3 (lower is better)
Translates to: SELLCESLRGST*TSSASGVEPAR
Trigger: ACGTGCAGGCTCTACACCGCTGGCGGAGGATGTTCAGGTGGACCCACGCAAGGACTCACAGAGCAGCTCCGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR TCA 72 bp GGCGTCCTGGCACCGGTCAGGCCGCCATTCCAGATCTaGGGACAGGCTCACAGGATACCTGTCCCAGTTGGA +
Preference number: 3 (lower is better)
Translates to: GVLAPVRPPFQI*GQAHRIPVPVG
Trigger: TCCAACTGGGACAGGTATCCTGTGAGCCTGTCCTCAGATCTGGAATGGCGGCCTGACCGGTGCCAGGACGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162863.8
3UTR GCA 72 bp TTGGAGAAGGCCTCTGTCTGCACGAGGTCGCCAGGGTaGTCAGAGATGCACGCGCCATTCAGGTCGCCCAGT +
Preference number: 3 (lower is better)
Translates to: LEKASVCTRSPG*SEMHAPFRSPS
Trigger: ACTGGGCGACCTGAATGGCGCGTGCATCTCTGAGCACCCTGGCGACCTCGTGCAGACAGAGGCCTTCTCCAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR CCA 72 bp GTGCGAGGGAGCACGGAAGTGGTCCAGCTTTCTGGATaGGGATCCTGCTCCGGGAGTTTTCCCGCACCCCTT +
Preference number: 3 (lower is better)
Translates to: VRGSTEVVQLSG*GSCSGSFPAPL
Trigger: AAGGGGTGCGGGAAAACTCCCGGAGCAGGATCCCCATCCAGAAAGCTGGACCACTTCCGTGCTCCCTCGCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR CCA 72 bp AGGAGTGCGAGGGAGCACGGAAGTGGTCCAGCTTTCTaGATGGGGATCCTGCTCCGGGAGTTTTCCCGCACC +
Preference number: 3 (lower is better)
Translates to: RSAREHGSGPAF*MGILLREFSRT
Trigger: GGTGCGGGAAAACTCCCGGAGCAGGATCCCCATCCAGAAAGCTGGACCACTTCCGTGCTCCCTCGCACTCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR CAA 90 bp CGCAGGACCGTCCATAGTCGGCCTCGAAGGCGCGCTCCATGGACGAGTGTGACTACGCTCAGAGCCACTTaGTGTGCTCTTGACCCACTG +
Preference number: 3 (lower is better)
Translates to: RRTVHSRPRRRAPWTSVTTLRAT*CALDPL
Trigger: CAGTGGGTCAAGAGCACACAAAGTGGCTCTGAGCGT...AGTCACACTCGTCCATGGAGCGCGCCTTCGAGGCCGACTATGGACGGTCCTGCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR TCA 72 bp GTCGTCGATCTCGTCCTCAATGCGGAAAGGGTGTTGTaGGGTGGGCTCATCCTCGGGGCACGAGTACGGGCT +
Preference number: 3 (lower is better)
Translates to: VVDLVLNAERVL*GGLILGARVRA
Trigger: AGCCCGTACTCGTGCCCCGAGGATGAGCCCACCTCACAACACCCTTTCCGCATTGAGGACGAGATCGACGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162863.8
3UTR GCA 72 bp CCTCTGTCTGCACGAGGTCGCCAGGGTGCTCAGAGATaGACGCGCCATTCAGGTCGCCCAGTTTGTTTTCCG +
Preference number: 3 (lower is better)
Translates to: PLSARGRQGAQR*TRHSGRPVCFP
Trigger: CGGAAAACAAACTGGGCGACCTGAATGGCGCGTGCATCTCTGAGCACCCTGGCGACCTCGTGCAGACAGAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR CCA 72 bp AGAGAGGGGATGAAGGAGTGCGAGGGAGCACGGAAGTaGTCCAGCTTTCTGGATGGGGATCCTGCTCCGGGA +
Preference number: 3 (lower is better)
Translates to: REGMKECEGARK*SSFLDGDPAPG
Trigger: TCCCGGAGCAGGATCCCCATCCAGAAAGCTGGACCACTTCCGTGCTCCCTCGCACTCCTTCATCCCCTCTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR GCA 72 bp TGGACGAGTGTGACTGCTCCAGGAAGCGCTCGGAGCTaGTCTGTGAGTCCTTGCGTGGGTCCACCTGAACAT +
Preference number: 3 (lower is better)
Translates to: WTSVTAPGSARS*SVSPCVGPPEH
Trigger: ATGTTCAGGTGGACCCACGCAAGGACTCACAGAGCAGCTCCGAGCGCTTCCTGGAGCAGTCACACTCGTCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR GCA 72 bp TGTGCTCACCACCTTTCTTTGGAGAAGGCCTCTGTCTaGACGAGGTCGCCAGGGTGCTCAGAGATGCACGCG +
Preference number: 3 (lower is better)
Translates to: CAHHLSLEKASV*TRSPGCSEMHA
Trigger: CGCGTGCATCTCTGAGCACCCTGGCGACCTCGTGCAGACAGAGGCCTTCTCCAAAGAAAGGTGGTGAGCACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR CCA 72 bp CGATCTCGTCCTCAATGCGGAAAGGGTGTTGTGAGGTaGGCTCATCCTCGGGGCACGAGTACGGGCTCATGT +
Preference number: 3 (lower is better)
Translates to: RSRPQCGKGVVR*AHPRGTSTGSC
Trigger: ACATGAGCCCGTACTCGTGCCCCGAGGATGAGCCCACCTCACAACACCCTTTCCGCATTGAGGACGAGATCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162863.8
3UTR TCA 72 bp CCTCAGGTTTGGTGCAGAGCTTTAGGGCACGCGAGATaGACACGTCTAAGTCGAACTGGGGACTGGCACCCC +
Preference number: 3 (lower is better)
Translates to: PQVWCRALGHAR*TRLSRTGDWHP
Trigger: GGGGTGCCAGTCCCCAGTTCGACTTAGACGTGTTCATCTCGCGTGCCCTAAAGCTCTGCACCAAACCTGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR GCA 72 bp GGATCCTGCTCCGGGAGTTTTCCCGCACCCCTTCTGTaGTCACCACCTTTCTTTGGAGAAGGCCTCTGTCTG +
Preference number: 3 (lower is better)
Translates to: GSCSGSFPAPLL*SPPFFGEGLCL
Trigger: CAGACAGAGGCCTTCTCCAAAGAAAGGTGGTGAGCACAGAAGGGGTGCGGGAAAACTCCCGGAGCAGGATCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR GCA 72 bp CAGCCATCAGCACGATGTCGTCGATCTCGTCCTCAATaGGGAAAGGGTGTTGTGAGGTGGGCTCATCCTCGG +
Preference number: 3 (lower is better)
Translates to: QPSARCRRSRPQ*GKGVVRWAHPR
Trigger: CCGAGGATGAGCCCACCTCACAACACCCTTTCCGCATTGAGGACGAGATCGACGACATCGTGCTGATGGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162863.8
3UTR CCA 72 bp CAGGATACCTGTCCCAGTTGGAGAGCTGGCTCTGACTaGCAGCCATCAGCACGATGTCGTCGATCTCGTCCT +
Preference number: 3 (lower is better)
Translates to: QDTCPSWRAGSD*QPSARCRRSRP
Trigger: AGGACGAGATCGACGACATCGTGCTGATGGCTGCCAGTCAGAGCCAGCTCTCCAACTGGGACAGGTATCCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162863.8
3UTR-3UTR CAA 90 bp GGGAGGAGAGATTCCAGTGGCAGAGTGTTCAGGGACAGACCGGGGACTGTTTGTGGTCCCGAAATAGGCTaGGAGAGGAGCTGTGTGTAT +
Preference number: 3 (lower is better)
Translates to: GRRDSSGRVFRDRPGTVCGPEIG*ERSCVY
Trigger: ATACACACAGCTCCTCTCCAAGCCTATTTCGGGACC...ACAAACAGTCCCCGGTCTGTCCCTGAACACTCTGCCACTGGAATCTCTCCTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091851.10
ENSMUST00000162863.8
3UTR TCA 72 bp GAGGACTGGCACGCTCAGAGCCACTTTGTGTGCTCTTaGCCCACTGTGCAATCTCCAGAAAGAGGCTTGCTG +
Preference number: 3 (lower is better)
Translates to: EDWHAQSHFVCS*PTVQSPERGLL
Trigger: CAGCAAGCCTCTTTCTGGAGATTGCACAGTGGGTCAAGAGCACACAAAGTGGCTCTGAGCGTGCCAGTCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR CAA 90 bp AGAGTGACCCCAGCAGAGGAAGACATTATACTGTGGTCAGACACTGGTCCAGGGAGTGGGTCACGTGGCTaGGAAACTGTCTGCAAGCTG +
Preference number: 3 (lower is better)
Translates to: RVTPAEEDIILWSDTGPGSGSRG*ETVCKL
Trigger: CAGCTTGCAGACAGTTTCCAAGCCACGTGACCCACT...CCCTGGACCAGTGTCTGACCACAGTATAATGTCTTCCTCTGCTGGGGTCACTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR CAA 90 bp TTTCTGACCCCTCTACTCTTGCAGGGCGTAGACTGCTGCCCTAGATCCCTTTCTAGTGGGTCACGTGGCTaGGAAACTGTCTGCAAGCTG +
Preference number: 3 (lower is better)
Translates to: FLTPLLLQGVDCCPRSLSSGSRG*ETVCKL
Trigger: CAGCTTGCAGACAGTTTCCAAGCCACGTGACCCACT...AGAAAGGGATCTAGGGCAGCAGTCTACGCCCTGCAAGAGTAGAGGGGTCAGAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR CAA 90 bp GGGAGGAGAGATTCCAGTGGCAGAGTGTTCAGGGACAGACCGGGGACTGTTTGTTCCATAGCTGACTCTTaGGGACACTTGAGGTTGGGA +
Preference number: 3 (lower is better)
Translates to: GRRDSSGRVFRDRPGTVCSIADS*GHLRLG
Trigger: TCCCAACCTCAAGTGTCCCAAAGAGTCAGCTATGGA...ACAAACAGTCCCCGGTCTGTCCCTGAACACTCTGCCACTGGAATCTCTCCTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091851.10
ENSMUST00000162863.8
3UTR-3UTR CAA 90 bp AGAGTGACCCCAGCAGAGGAAGACATTATACTGTGGTCAGACACTGGTCCAGGGCCACTTTGTGTGCTCTaGACCCACTGTGCAATCTCC +
Preference number: 3 (lower is better)
Translates to: RVTPAEEDIILWSDTGPGPLCVL*THCAIS
Trigger: GGAGATTGCACAGTGGGTCAAGAGCACACAAAGTGG...CCCTGGACCAGTGTCTGACCACAGTATAATGTCTTCCTCTGCTGGGGTCACTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR CAA 90 bp GGACAGATGGCAAGGGACAGTGAGAAGCACTCGGGACCAAGTTTTCTGACCAAATTCAGGTCGCCCAGTTaGTTTTCCGGGAGGTCCTCA +
Preference number: 3 (lower is better)
Translates to: GQMARDSEKHSGPSFLTKFRSPS*FSGRSS
Trigger: TGAGGACCTCCCGGAAAACAAACTGGGCGACCTGAA...TTTGGTCAGAAAACTTGGTCCCGAGTGCTTCTCACTGTCCCTTGCCATCTGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR GCA 72 bp TTTCTGACCCCTCTACTCTTGCAGGGCGTAGACTGCTaGCCTAGATCCCTTTCTTCCCTTGCACACAATCTC +
Preference number: 3 (lower is better)
Translates to: FLTPLLLQGVDC*PRSLSSLAHNL
Trigger: GAGATTGTGTGCAAGGGAAGAAAGGGATCTAGGGCAGCAGTCTACGCCCTGCAAGAGTAGAGGGGTCAGAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR GCA 72 bp CTGTTTCTGACCCCTCTACTCTTGCAGGGCGTAGACTaGTGCCCTAGATCCCTTTCTTCCCTTGCACACAAT +
Preference number: 3 (lower is better)
Translates to: LFLTPLLLQGVD*CPRSLSSLAHN
Trigger: ATTGTGTGCAAGGGAAGAAAGGGATCTAGGGCAGCAGTCTACGCCCTGCAAGAGTAGAGGGGTCAGAAACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR GCA 72 bp TTGAGACTAAGTGGGTCACGTGGCTTGGAAACTGTCTaGAAGCTGTTTCTGACCCCTCTACTCTTGCAGGGC +
Preference number: 3 (lower is better)
Translates to: LRLSGSRGLETV*KLFLTPLLLQG
Trigger: GCCCTGCAAGAGTAGAGGGGTCAGAAACAGCTTGCAGACAGTTTCCAAGCCACGTGACCCACTTAGTCTCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR GCA 72 bp CATGTACAATATCTATTGGGGAACGAGTCAGGAAAGTaGATAGGGCATGCAGGTGGAGGCTGTAGGCACAGG +
Preference number: 3 (lower is better)
Translates to: HVQYLLGNESGK*IGHAGGGCRHR
Trigger: CCTGTGCCTACAGCCTCCACCTGCATGCCCTATGCACTTTCCTGACTCGTTCCCCAATAGATATTGTACATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR CCA 72 bp GGCTTCTCTGGGCCCAAATGTCCATTTGAGACTAAGTaGGTCACGTGGCTTGGAAACTGTCTGCAAGCTGTT +
Preference number: 3 (lower is better)
Translates to: GFSGPKCPFETK*VTWLGNCLQAV
Trigger: AACAGCTTGCAGACAGTTTCCAAGCCACGTGACCCACTTAGTCTCAAATGGACATTTGGGCCCAGAGAAGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR CAA 90 bp ATCTTCCCTCCTAGCTCATTTGTTTTTATGGAAGGCACCTTATTGCTTTCTCTAACGTCCGGGAGCAGCTaGCGCAGTGGCCTCTTCACC +
Preference number: 3 (lower is better)
Translates to: IFPPSSFVFMEGTLLLSLTSGSS*RSGLFT
Trigger: GGTGAAGAGGCCACTGCGCAAGCTGCTCCCGGACGT...TAGAGAAAGCAATAAGGTGCCTTCCATAAAAACAAATGAGCTAGGAGGGAAGAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000162863.8
3UTR TCA 72 bp GGTGGGAGGCTGGGGTCTGGACAAGAGGGATTCTTGTaGTTGCTGTCTTCAAACTCACCCATGTACAATATC +
Preference number: 3 (lower is better)
Translates to: GGRLGSGQEGFL*LLSSNSPMYNI
Trigger: GATATTGTACATGGGTGAGTTTGAAGACAGCAATCACAAGAATCCCTCTTGTCCAGACCCCAGCCTCCCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR CAA 90 bp ATCTTCCCTCCTAGCTCATTTGTTTTTATGGAAGGCACCTTATTGCTTTCTCTATCCAGGGGCAGGGGCTaGGGACACAGGCTTCTGACA +
Preference number: 3 (lower is better)
Translates to: IFPPSSFVFMEGTLLLSLSRGRG*GHRLLT
Trigger: TGTCAGAAGCCTGTGTCCCAAGCCCCTGCCCCTGGA...TAGAGAAAGCAATAAGGTGCCTTCCATAAAAACAAATGAGCTAGGAGGGAAGAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR CAA 90 bp AGAGTGACCCCAGCAGAGGAAGACATTATACTGTGGTCAGACACTGGTCCAGGGAGGGCAATTAAGCACTaGGAGAGTCATAGAACTATG +
Preference number: 3 (lower is better)
Translates to: RVTPAEEDIILWSDTGPGRAIKH*ESHRTM
Trigger: CATAGTTCTATGACTCTCCAAGTGCTTAATTGCCCT...CCCTGGACCAGTGTCTGACCACAGTATAATGTCTTCCTCTGCTGGGGTCACTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR CAA 90 bp TCAACAGACCAGCTAGACCTCTTGTGGGTATCTTTGGGATGTTGGCAGGGAGAGCAGGGTGGGACTACTTaGAATCCCTTTCTTTGTCTT +
Preference number: 3 (lower is better)
Translates to: STDQLDLLWVSLGCWQGEQGGTT*NPFLCL
Trigger: AAGACAAAGAAAGGGATTCAAAGTAGTCCCACCCTG...CTCTCCCTGCCAACATCCCAAAGATACCCACAAGAGGTCTAGCTGGTCTGTTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091851.10
ENSMUST00000162863.8
3UTR-3UTR CAA 90 bp CCCTTTCTTTGTCTTGGGTTTTCCATCTCCATAGCTGACTCTTTGGGACACTTGGATCCCTTTCTTCCCTaGCACACAATCTCAACAGAC +
Preference number: 3 (lower is better)
Translates to: PFLCLGFSISIADSLGHLDPFLP*HTISTD
Trigger: GTCTGTTGAGATTGTGTGCAAGGGAAGAAAGGGATC...CAAGTGTCCCAAAGAGTCAGCTATGGAGATGGAAAACCCAAGACAAAGAAAGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091851.10
ENSMUST00000162863.8
3UTR-3UTR CAA 90 bp GCTTCTCTGGGCCCAAATGTCCATTTGAGACTAAGTGGGTCACGTGGCTTGGAACTACAAATGAGCAATTaGTGCCAAGAACATTTGGTC +
Preference number: 3 (lower is better)
Translates to: ASLGPNVHLRLSGSRGLELQMSN*CQEHLV
Trigger: GACCAAATGTTCTTGGCACAAATTGCTCATTTGTAG...TTCCAAGCCACGTGACCCACTTAGTCTCAAATGGACATTTGGGCCCAGAGAAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR CAA 90 bp AGCACTTGGAGAGTCATAGAACTATGTCTGGTGACTAGGAGAAAGAAACTAGTTGGTCCCGAAATAGGCTaGGAGAGGAGCTGTGTGTAT +
Preference number: 3 (lower is better)
Translates to: STWRVIELCLVTRRKKLVGPEIG*ERSCVY
Trigger: ATACACACAGCTCCTCTCCAAGCCTATTTCGGGACC...AACTAGTTTCTTTCTCCTAGTCACCAGACATAGTTCTATGACTCTCCAAGTGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR CAA 90 bp ATCTTCCCTCCTAGCTCATTTGTTTTTATGGAAGGCACCTTATTGCTTTCTCTATTCAGGTCGCCCAGTTaGTTTTCCGGGAGGTCCTCA +
Preference number: 3 (lower is better)
Translates to: IFPPSSFVFMEGTLLLSLFRSPS*FSGRSS
Trigger: TGAGGACCTCCCGGAAAACAAACTGGGCGACCTGAA...TAGAGAAAGCAATAAGGTGCCTTCCATAAAAACAAATGAGCTAGGAGGGAAGAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR GCA 72 bp GGAGGCTGGGGTCTGGACAAGAGGGATTCTTGTGATTaGTGTCTTCAAACTCACCCATGTACAATATCTATT +
Preference number: 3 (lower is better)
Translates to: GGWGLDKRDSCD*CLQTHPCTISI
Trigger: AATAGATATTGTACATGGGTGAGTTTGAAGACAGCAATCACAAGAATCCCTCTTGTCCAGACCCCAGCCTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR CAA 90 bp ACTTGGAGAGTCATAGAACTATGTCTGGTGACTAGGAGAAAGAAACTAGTTCTGTCCATAGCTGACTCTTaGGGACACTTGAGGTTGGGA +
Preference number: 3 (lower is better)
Translates to: TWRVIELCLVTRRKKLVLSIADS*GHLRLG
Trigger: TCCCAACCTCAAGTGTCCCAAAGAGTCAGCTATGGA...CAGAACTAGTTTCTTTCTCCTAGTCACCAGACATAGTTCTATGACTCTCCAAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091851.10
ENSMUST00000162863.8
3UTR-3UTR CAA 90 bp ACAAGAGGGATTCTTGTGATTGCTGTCTTCAAACTCACCCATGTACAATATCTACCACTTTGTGTGCTCTaGACCCACTGTGCAATCTCC +
Preference number: 3 (lower is better)
Translates to: TRGILVIAVFKLTHVQYLPLCVL*THCAIS
Trigger: GGAGATTGCACAGTGGGTCAAGAGCACACAAAGTGG...TAGATATTGTACATGGGTGAGTTTGAAGACAGCAATCACAAGAATCCCTCTTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR CAA 90 bp ACAAGAGGGATTCTTGTGATTGCTGTCTTCAAACTCACCCATGTACAATATCTAGATCCCTTTCTTCCCTaGCACACAATCTCAACAGAC +
Preference number: 3 (lower is better)
Translates to: TRGILVIAVFKLTHVQYLDPFLP*HTISTD
Trigger: GTCTGTTGAGATTGTGTGCAAGGGAAGAAAGGGATC...TAGATATTGTACATGGGTGAGTTTGAAGACAGCAATCACAAGAATCCCTCTTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR-3UTR CAA 90 bp ACTTGGAGAGTCATAGAACTATGTCTGGTGACTAGGAGAAAGAAACTAGTTCTGAGGGCAATTAAGCACTaGGAGAGTCATAGAACTATG +
Preference number: 3 (lower is better)
Translates to: TWRVIELCLVTRRKKLVLRAIKH*ESHRTM
Trigger: CATAGTTCTATGACTCTCCAAGTGCTTAATTGCCCT...CAGAACTAGTTTCTTTCTCCTAGTCACCAGACATAGTTCTATGACTCTCCAAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR GCA 90 bp CTGCACGTGGATCGCGCTGCACCTCGCTGGCGTCCTGGCACCGGTCAGGCCGCCCCCCGTGAGCATCTCTaGCAGGATGCAGCCAGCTGC +
Preference number: 4 (lower is better)
Translates to: LHVDRAAPRWRPGTGQAAPREHL*QDAASC
Trigger: GCAGCTGGCTGCATCCTGGCAGAGATGCTCACGGGG...GGCGGCCTGACCGGTGCCAGGACGCCAGCGAGGTGCAGCGCGATCCACGTGCAG
70% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000159162.2
CDS-3UTR TCA 90 bp TGCACGTGGATCGCGCTGCACCTCGCTGGCGTCCTGGCACCGGTCAGGCCGCCAACAGCACCAGCCCGTTaGCCCCAAAGCCAAGGGGTT +
Preference number: 4 (lower is better)
Translates to: CTWIALHLAGVLAPVRPPTAPAR*PQSQGV
Trigger: AACCCCTTGGCTTTGGGGTCAACGGGCTGGTGCTGT...TGGCGGCCTGACCGGTGCCAGGACGCCAGCGAGGTGCAGCGCGATCCACGTGCA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR GCA 90 bp CTGGTCCAGGGGCAGGGGCTTGGGACACAGGCTTCTGACACCATTAGGCTGGTGGGAGCGCTGGCCGCCTaGTTCCAGTGCGACAGGTCC +
Preference number: 4 (lower is better)
Translates to: LVQGQGLGTQASDTIRLVGALAA*FQCDRS
Trigger: GGACCTGTCGCACTGGAAGCAGGCGGCCAGCGCTCC...CACCAGCCTAATGGTGTCAGAAGCCTGTGTCCCAAGCCCCTGCCCCTGGACCAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000091851.10
CDS-3UTR CCA 90 bp CTGGTCCAGGGGCAGGGGCTTGGGACACAGGCTTCTGACACCATTAGGCTGGTGACCTCGCTGGCGTCCTaGCACCGGTCAGGCCGCCAT +
Preference number: 4 (lower is better)
Translates to: LVQGQGLGTQASDTIRLVTSLAS*HRSGRH
Trigger: ATGGCGGCCTGACCGGTGCCAGGACGCCAGCGAGGT...CACCAGCCTAATGGTGTCAGAAGCCTGTGTCCCAAGCCCCTGCCCCTGGACCAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000091851.10
CDS-3UTR TCA 90 bp CTGGTCCAGGGGCAGGGGCTTGGGACACAGGCTTCTGACACCATTAGGCTGGTGCCTCCCAGGTGCTGCTaGCGAAGGACGGCATCACCC +
Preference number: 4 (lower is better)
Translates to: LVQGQGLGTQASDTIRLVPPRCC*RRTASP
Trigger: GGGTGATGCCGTCCTTCGTCAGCAGCACCTGGGAGG...CACCAGCCTAATGGTGTCAGAAGCCTGTGTCCCAAGCCCCTGCCCCTGGACCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000091851.10
CDS-3UTR GCA 90 bp TTGCTGGCTCATCCTCACGTGACACAGGGTCTGCTGCTACTGCAGCCCTGGGGGTCAGTCAGCGTGCCCTaGTCCAGCAGGCACGCCAGG +
Preference number: 4 (lower is better)
Translates to: LLAHPHVTQGLLLLQPWGSVSVP*SSRHAR
Trigger: CCTGGCGTGCCTGCTGGAGCAGGGCACGCTGACTGA...CCCCCAGGGCTGCAGTAGCAGCAGACCCTGTGTCACGTGAGGATGAGCCAGCAA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR GCA 90 bp GCTCGGAGCTGCTCTGTGAGTCCTTGCGTGGGTCCACCTGAACATCCTCCGCCATCAGTCAGCGTGCCCTaGTCCAGCAGGCACGCCAGG +
Preference number: 4 (lower is better)
Translates to: ARSCSVSPCVGPPEHPPPSVSVP*SSRHAR
Trigger: CCTGGCGTGCCTGCTGGAGCAGGGCACGCTGACTGA...TGGCGGAGGATGTTCAGGTGGACCCACGCAAGGACTCACAGAGCAGCTCCGAGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR TCA 90 bp CTGGTCCAGGGGCAGGGGCTTGGGACACAGGCTTCTGACACCATTAGGCTGGTGCTCGGAGCTGCTCTGTaGGTCCTTGCGTGGGTCCAC +
Preference number: 4 (lower is better)
Translates to: LVQGQGLGTQASDTIRLVLGAAL*VLAWVH
Trigger: GTGGACCCACGCAAGGACTCACAGAGCAGCTCCGAG...CACCAGCCTAATGGTGTCAGAAGCCTGTGTCCCAAGCCCCTGCCCCTGGACCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000091851.10
CDS-3UTR GCA 90 bp CTGGTCCAGGGGCAGGGGCTTGGGACACAGGCTTCTGACACCATTAGGCTGGTGGCGCGTGCTTCATGCTaGGGGCGTCACTCAGAACGA +
Preference number: 4 (lower is better)
Translates to: LVQGQGLGTQASDTIRLVARASC*GRHSER
Trigger: TCGTTCTGAGTGACGCCCGCAGCATGAAGCACGCGC...CACCAGCCTAATGGTGTCAGAAGCCTGTGTCCCAAGCCCCTGCCCCTGGACCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR GCA 90 bp GTCAGACACTGGTCCAGGGGCAGGGGCTTGGGACACAGGCTTCTGACACCATTATCAGTCAGCGTGCCCTaGTCCAGCAGGCACGCCAGG +
Preference number: 4 (lower is better)
Translates to: VRHWSRGRGLGHRLLTPLSVSVP*SSRHAR
Trigger: CCTGGCGTGCCTGCTGGAGCAGGGCACGCTGACTGA...TAATGGTGTCAGAAGCCTGTGTCCCAAGCCCCTGCCCCTGGACCAGTGTCTGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR CCA 90 bp CCAACGCAGCAGAGAGGGGATGAAGGAGTGCGAGGGAGCACGGAAGTGGTCCAGGAGCAGCTTGCGCAGTaGCCTCTTCACCTCCCAGGT +
Preference number: 4 (lower is better)
Translates to: PTQQRGDEGVRGSTEVVQEQLAQ*PLHLPG
Trigger: ACCTGGGAGGTGAAGAGGCCACTGCGCAAGCTGCTC...CTGGACCACTTCCGTGCTCCCTCGCACTCCTTCATCCCCTCTCTGCTGCGTTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000091851.10
CDS-3UTR CCA 90 bp CTGGTCCAGGGGCAGGGGCTTGGGACACAGGCTTCTGACACCATTAGGCTGGTGAAGGGTGTTGTGAGGTaGGCTCATCCTCGGGGCACG +
Preference number: 4 (lower is better)
Translates to: LVQGQGLGTQASDTIRLVKGVVR*AHPRGT
Trigger: CGTGCCCCGAGGATGAGCCCACCTCACAACACCCTT...CACCAGCCTAATGGTGTCAGAAGCCTGTGTCCCAAGCCCCTGCCCCTGGACCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000091851.10
CDS-3UTR TCA 90 bp GCACGAGGTCGCCAGGGTGCTCAGAGATGCACGCGCCATTCAGGTCGCCCAGTTGGGGTTGGAAGTCAATaGAGCGCCCACCAAGGTCAT +
Preference number: 4 (lower is better)
Translates to: ARGRQGAQRCTRHSGRPVGVGSQ*SAHQGH
Trigger: ATGACCTTGGTGGGCGCTTCATTGACTTCCAACCCC...AACTGGGCGACCTGAATGGCGCGTGCATCTCTGAGCACCCTGGCGACCTCGTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR TCA 90 bp CACGGAAGTGGTCCAGCTTTCTGGATGGGGATCCTGCTCCGGGAGTTTTCCCGCACAGCACCAGCCCGTTaGCCCCAAAGCCAAGGGGTT +
Preference number: 4 (lower is better)
Translates to: HGSGPAFWMGILLREFSRTAPAR*PQSQGV
Trigger: AACCCCTTGGCTTTGGGGTCAACGGGCTGGTGCTGT...GCGGGAAAACTCCCGGAGCAGGATCCCCATCCAGAAAGCTGGACCACTTCCGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR GCA 90 bp CTTCCCTTCGATGGGAAACTGACGGCTCCCAGCCAGGCTCGGTTCAAACCCGCTATCTCTCGGAGCGCGTaGTTCATGCTGCGGGCGTCA +
Preference number: 4 (lower is better)
Translates to: LPFDGKLTAPSQARFKPAISRSA*FMLRAS
Trigger: TGACGCCCGCAGCATGAAGCACGCGCTCCGAGAGAT...AGCGGGTTTGAACCGAGCCTGGCTGGGAGCCGTCAGTTTCCCATCGAAGGGAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR GCA 90 bp GTCAGACACTGGTCCAGGGGCAGGGGCTTGGGACACAGGCTTCTGACACCATTACGTCCGGGAGCAGCTTaGGCAGTGGCCTCTTCACCT +
Preference number: 4 (lower is better)
Translates to: VRHWSRGRGLGHRLLTPLRPGAA*AVASSP
Trigger: AGGTGAAGAGGCCACTGCGCAAGCTGCTCCCGGACG...TAATGGTGTCAGAAGCCTGTGTCCCAAGCCCCTGCCCCTGGACCAGTGTCTGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000091851.10
CDS-3UTR TCA 90 bp CTGGTCCAGGGGCAGGGGCTTGGGACACAGGCTTCTGACACCATTAGGCTGGTGCGAAATCCCCAATCTTaGGCACAAGGTCCTCCGTGC +
Preference number: 4 (lower is better)
Translates to: LVQGQGLGTQASDTIRLVRNPQS*AQGPPC
Trigger: GCACGGAGGACCTTGTGCTCAAGATTGGGGATTTCG...CACCAGCCTAATGGTGTCAGAAGCCTGTGTCCCAAGCCCCTGCCCCTGGACCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR TCA 90 bp TCAACAGACCAGCTAGACCTCTTGTGGGTATCTTTGGGATGTTGGCAGGGAGAGTGGGTGTCCCGGGGGTaGGGCAGAGAGACGGGGCTC +
Preference number: 4 (lower is better)
Translates to: STDQLDLLWVSLGCWQGEWVSRG*GRETGL
Trigger: GAGCCCCGTCTCTCTGCCTCACCCCCGGGACACCCA...CTCTCCCTGCCAACATCCCAAAGATACCCACAAGAGGTCTAGCTGGTCTGTTGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000091851.10
CDS-3UTR GCA 90 bp TTCTTTCTCCCCGGATCCGCGTGTGTTCTGCTAACCCCAACGCAGCAGAGAGGGGGAGCGCGTGCTTCATaGTGCGGGCGTCACTCAGAA +
Preference number: 4 (lower is better)
Translates to: FFLPGSACVLLTPTQQRGGARAS*CGRHSE
Trigger: TTCTGAGTGACGCCCGCAGCATGAAGCACGCGCTCC...CCCTCTCTGCTGCGTTGGGGTTAGCAGAACACACGCGGATCCGGGGAGAAAGAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR GCA 90 bp AGGGCACGCGAGATGAACACGTCTAAGTCGAACTGGGGACTGGCACCCCCATCGGGCTTCAGGTCTCTGTaGAGCACGTTCGCAGAGTGG +
Preference number: 4 (lower is better)
Translates to: RAREMNTSKSNWGLAPPSGFRSL*STFAEW
Trigger: CCACTCTGCGAACGTGCTGCACAGAGACCTGAAGCC...CGATGGGGGTGCCAGTCCCCAGTTCGACTTAGACGTGTTCATCTCGCGTGCCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR GCA 90 bp TTTCTGACCCCTCTACTCTTGCAGGGCGTAGACTGCTGCCCTAGATCCCTTTCTGCACGTGGATCGCGCTaGACCTCGCTGGCGTCCTGG +
Preference number: 4 (lower is better)
Translates to: FLTPLLLQGVDCCPRSLSARGSR*TSLASW
Trigger: CCAGGACGCCAGCGAGGTGCAGCGCGATCCACGTGC...AGAAAGGGATCTAGGGCAGCAGTCTACGCCCTGCAAGAGTAGAGGGGTCAGAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000091851.10
CDS-3UTR GCA 90 bp GAGCACGGAAGTGGTCCAGCTTTCTGGATGGGGATCCTGCTCCGGGAGTTTTCCGGAAGCGCTCGGAGCTaGTCTGTGAGTCCTTGCGTG +
Preference number: 4 (lower is better)
Translates to: EHGSGPAFWMGILLREFSGSARS*SVSPCV
Trigger: CACGCAAGGACTCACAGAGCAGCTCCGAGCGCTTCC...GGAAAACTCCCGGAGCAGGATCCCCATCCAGAAAGCTGGACCACTTCCGTGCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000091851.10
CDS-3UTR CCA 90 bp CTTCCCTTCGATGGGAAACTGACGGCTCCCAGCCAGGCTCGGTTCAAACCCGCTATGAACAGCTTGGCGTaGTCCTCAGTCAGCGTGCCC +
Preference number: 4 (lower is better)
Translates to: LPFDGKLTAPSQARFKPAMNSLA*SSVSVP
Trigger: GGGCACGCTGACTGAGGACCACGCCAAGCTGTTCAT...AGCGGGTTTGAACCGAGCCTGGCTGGGAGCCGTCAGTTTCCCATCGAAGGGAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR TCA 90 bp CTAACCCCAACGCAGCAGAGAGGGGATGAAGGAGTGCGAGGGAGCACGGAAGTGGGGGTTGGAAGTCAATaGAGCGCCCACCAAGGTCAT +
Preference number: 4 (lower is better)
Translates to: LTPTQQRGDEGVRGSTEVGVGSQ*SAHQGH
Trigger: ATGACCTTGGTGGGCGCTTCATTGACTTCCAACCCC...CACTTCCGTGCTCCCTCGCACTCCTTCATCCCCTCTCTGCTGCGTTGGGGTTAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR TCA 90 bp CTAACCCCAACGCAGCAGAGAGGGGATGAAGGAGTGCGAGGGAGCACGGAAGTGGGAGCAGCTGATACATaGACAGCTTGGCGTGGTCCT +
Preference number: 4 (lower is better)
Translates to: LTPTQQRGDEGVRGSTEVGAADT*TAWRGP
Trigger: AGGACCACGCCAAGCTGTTCATGTATCAGCTGCTCC...CACTTCCGTGCTCCCTCGCACTCCTTCATCCCCTCTCTGCTGCGTTGGGGTTAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR GCA 90 bp GTGGAGGCTGTAGGCACAGGCCTGGGAGATGTTTACCTCAATTTACCCACAGCCCCCCGTGAGCATCTCTaGCAGGATGCAGCCAGCTGC +
Preference number: 4 (lower is better)
Translates to: VEAVGTGLGDVYLNLPTAPREHL*QDAASC
Trigger: GCAGCTGGCTGCATCCTGGCAGAGATGCTCACGGGG...GGCTGTGGGTAAATTGAGGTAAACATCTCCCAGGCCTGTGCCTACAGCCTCCAC
59% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
CDS-3UTR CCA 90 bp CCAACGCAGCAGAGAGGGGATGAAGGAGTGCGAGGGAGCACGGAAGTGGTCCAGCATACCCGTAGACGCTaGCGATGCAGTCACCTTTCT +
Preference number: 4 (lower is better)
Translates to: PTQQRGDEGVRGSTEVVQHTRRR*RCSHLS
Trigger: AGAAAGGTGACTGCATCGCCAGCGTCTACGGGTATG...CTGGACCACTTCCGTGCTCCCTCGCACTCCTTCATCCCCTCTCTGCTGCGTTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR CCA 90 bp GGGAGGAGAGATTCCAGTGGCAGAGTGTTCAGGGACAGACCGGGGACTGTTTGTCGAAGGCGCGCTCCATaGACGAGTGTGACTGCTCCA +
Preference number: 4 (lower is better)
Translates to: GRRDSSGRVFRDRPGTVCRRRAP*TSVTAP
Trigger: TGGAGCAGTCACACTCGTCCATGGAGCGCGCCTTCG...ACAAACAGTCCCCGGTCTGTCCCTGAACACTCTGCCACTGGAATCTCTCCTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000091851.10
CDS-3UTR CCA 90 bp GTAGACTGCTGCCCTAGATCCCTTTCTTCCCTTGCACACAATCTCAACAGACCTCTGCTACTGCAGCCCTaGGGGGAGCGCTGGCCGCCT +
Preference number: 4 (lower is better)
Translates to: VDCCPRSLSSLAHNLNRPLLLQP*GERWPP
Trigger: AGGCGGCCAGCGCTCCCCCCAGGGCTGCAGTAGCAG...AGGTCTGTTGAGATTGTGTGCAAGGGAAGAAAGGGATCTAGGGCAGCAGTCTAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000091851.10
CDS-3UTR GCA 90 bp GACGGCTCCCAGCCAGGCTCGGTTCAAACCCGCTCCCAGAGGTTAAAGGCTAGTCGATCTCGTCCTCAATaGGGAAAGGGTGTTGTGAGG +
Preference number: 4 (lower is better)
Translates to: DGSQPGSVQTRSQRLKASRSRPQ*GKGVVR
Trigger: CCTCACAACACCCTTTCCGCATTGAGGACGAGATCG...ACTAGCCTTTAACCTCTGGGAGCGGGTTTGAACCGAGCCTGGCTGGGAGCCGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000091851.10
CDS-3UTR GCA 90 bp AGAGATTCCAGTGGCAGAGTGTTCAGGGACAGACCGGGGACTGTTTGTATTCCCGAGAAGGCCTCTGTCTaGACGAGGTCGCCAGGGTGC +
Preference number: 4 (lower is better)
Translates to: RDSSGRVFRDRPGTVCIPEKASV*TRSPGC
Trigger: GCACCCTGGCGACCTCGTGCAGACAGAGGCCTTCTC...GGGAATACAAACAGTCCCCGGTCTGTCCCTGAACACTCTGCCACTGGAATCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000091851.10
CDS-3UTR CCA 90 bp GGGAGGAGAGATTCCAGTGGCAGAGTGTTCAGGGACAGACCGGGGACTGTTTGTATGAACAGCTTGGCGTaGTCCTCAGTCAGCGTGCCC +
Preference number: 4 (lower is better)
Translates to: GRRDSSGRVFRDRPGTVCMNSLA*SSVSVP
Trigger: GGGCACGCTGACTGAGGACCACGCCAAGCTGTTCAT...ACAAACAGTCCCCGGTCTGTCCCTGAACACTCTGCCACTGGAATCTCTCCTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091851.10
ENSMUST00000162863.8
CDS-3UTR CCA 90 bp GAGCACGGAAGTGGTCCAGCTTTCTGGATGGGGATCCTGCTCCGGGAGTTTTCCAGAGCTGGCTCTGACTaGCAGCCATCAGCACGATGT +
Preference number: 4 (lower is better)
Translates to: EHGSGPAFWMGILLREFSRAGSD*QPSARC
Trigger: ACATCGTGCTGATGGCTGCCAGTCAGAGCCAGCTCT...GGAAAACTCCCGGAGCAGGATCCCCATCCAGAAAGCTGGACCACTTCCGTGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000091851.10
CDS-3UTR CCA 90 bp GTCAGACACTGGTCCAGGGGCAGGGGCTTGGGACACAGGCTTCTGACACCATTAGGAGGTCCTCAGGTTTaGTGCAGAGCTTTAGGGCAC +
Preference number: 4 (lower is better)
Translates to: VRHWSRGRGLGHRLLTPLGGPQV*CRALGH
Trigger: GTGCCCTAAAGCTCTGCACCAAACCTGAGGACCTCC...TAATGGTGTCAGAAGCCTGTGTCCCAAGCCCCTGCCCCTGGACCAGTGTCTGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000091851.10
3UTR CAA 72 bp TGCTCAGAGATGCACGCGCCATTCAGGTCGCCCAGTTaGTTTTCCGGGAGGTCCTCAGGTTTGGTGCAGAGC +
Preference number: 4 (lower is better)
Translates to: CSEMHAPFRSPS*FSGRSSGLVQS
Trigger: GCTCTGCACCAAACCTGAGGACCTCCCGGAAAACAAACTGGGCGACCTGAATGGCGCGTGCATCTCTGAGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR TCA 90 bp CTGTTTCTGACCCCTCTACTCTTGCAGGGCGTAGACTGCTGCCCTAGATCCCTTCAATGGCTTCACTGTTaGCGTCCGGGAGCAGCTTGC +
Preference number: 4 (lower is better)
Translates to: LFLTPLLLQGVDCCPRSLQWLHC*RPGAAC
Trigger: GCAAGCTGCTCCCGGACGTCAACAGTGAAGCCATTG...AAGGGATCTAGGGCAGCAGTCTACGCCCTGCAAGAGTAGAGGGGTCAGAAACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000091851.10
CDS-3UTR TCA 90 bp CACGGAAGTGGTCCAGCTTTCTGGATGGGGATCCTGCTCCGGGAGTTTTCCCGCCGTGAGCCCCTTGTGTaGGTAATGTTGATCCACGAT +
Preference number: 4 (lower is better)
Translates to: HGSGPAFWMGILLREFSRREPLV*VMLIHD
Trigger: ATCGTGGATCAACATTACTCACACAAGGGGCTCACG...GCGGGAAAACTCCCGGAGCAGGATCCCCATCCAGAAAGCTGGACCACTTCCGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000162863.8
CDS-3UTR GCA 90 bp AGAGTGACCCCAGCAGAGGAAGACATTATACTGTGGTCAGACACTGGTCCAGGGGGAGCGCGTGCTTCATaGTGCGGGCGTCACTCAGAA +
Preference number: 4 (lower is better)
Translates to: RVTPAEEDIILWSDTGPGGARAS*CGRHSE
Trigger: TTCTGAGTGACGCCCGCAGCATGAAGCACGCGCTCC...CCCTGGACCAGTGTCTGACCACAGTATAATGTCTTCCTCTGCTGGGGTCACTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR GCA 90 bp TTCTTTCTCCCCGGATCCGCGTGTGTTCTGCTAACCCCAACGCAGCAGAGAGGGCAGGATGCAGCCAGCTaGCCACATATCGATGGCTTT +
Preference number: 4 (lower is better)
Translates to: FFLPGSACVLLTPTQQRGQDAAS*PHIDGF
Trigger: AAAGCCATCGATATGTGGGCAGCTGGCTGCATCCTG...CCCTCTCTGCTGCGTTGGGGTTAGCAGAACACACGCGGATCCGGGGAGAAAGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
CDS-3UTR GCA 90 bp AACGGCTTCTCTGGGCCCAAATGTCCATTTGAGACTAAGTGGGTCACGTGGCTTACGAGGTCGCCAGGGTaGTCAGAGATGCACGCGCCA +
Preference number: 4 (lower is better)
Translates to: NGFSGPKCPFETKWVTWLTRSPG*SEMHAP
Trigger: TGGCGCGTGCATCTCTGAGCACCCTGGCGACCTCGT...AAGCCACGTGACCCACTTAGTCTCAAATGGACATTTGGGCCCAGAGAAGCCGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000091851.10
3UTR CAA 72 bp AGGTCGCCCAGTTTGTTTTCCGGGAGGTCCTCAGGTTaGGTGCAGAGCTTTAGGGCACGCGAGATGAACACG +
Preference number: 4 (lower is better)
Translates to: RSPSLFSGRSSG*VQSFRAREMNT
Trigger: CGTGTTCATCTCGCGTGCCCTAAAGCTCTGCACCAAACCTGAGGACCTCCCGGAAAACAAACTGGGCGACCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR TCA 90 bp CCATTCAGGTCGCCCAGTTTGTTTTCCGGGAGGTCCTCAGGTTTGGTGCAGAGCGCACCTCGTACACCTTaGCAATGTTGTCGTGGTCCA +
Preference number: 4 (lower is better)
Translates to: PFRSPSLFSGRSSGLVQSAPRTP*QCCRGP
Trigger: TGGACCACGACAACATTGTCAAGGTGTACGAGGTGC...GCTCTGCACCAAACCTGAGGACCTCCCGGAAAACAAACTGGGCGACCTGAATGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR TCA 90 bp GCTTGTCCAGGTAGGATGGAGACCCCACTTTGTAGTCGCAGGACCGTCCATAGTAGAGCATTTTCCCCGTaGGCATCTCTGCCAGGATGC +
Preference number: 4 (lower is better)
Translates to: ACPGRMETPLCSRRTVHSRAFSP*ASLPGC
Trigger: GCATCCTGGCAGAGATGCTCACGGGGAAAATGCTCT...ACTATGGACGGTCCTGCGACTACAAAGTGGGGTCTCCATCCTACCTGGACAAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000159162.2
CDS-3UTR TCA 90 bp AGAGTGACCCCAGCAGAGGAAGACATTATACTGTGGTCAGACACTGGTCCAGGGATCTGCTCCAGCTCGTaGGCCCCAGCGAAGAGCATT +
Preference number: 4 (lower is better)
Translates to: RVTPAEEDIILWSDTGPGICSSS*APAKSI
Trigger: AATGCTCTTCGCTGGGGCTCACGAGCTGGAGCAGAT...CCCTGGACCAGTGTCTGACCACAGTATAATGTCTTCCTCTGCTGGGGTCACTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000091851.10
CDS-3UTR TCA 90 bp CCAAGGAGATCTCTCAACAGACCAGCTAGACCTCTTGTGGGTATCTTTGGGATGGCGGAAAGGGTGTTGTaGGGTGGGCTCATCCTCGGG +
Preference number: 4 (lower is better)
Translates to: PRRSLNRPARPLVGIFGMAERVL*GGLILG
Trigger: CCCGAGGATGAGCCCACCTCACAACACCCTTTCCGC...CATCCCAAAGATACCCACAAGAGGTCTAGCTGGTCTGTTGAGAGATCTCCTTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000091851.10
CDS-3UTR TCA 90 bp AGGAGAGATTCCAGTGGCAGAGTGTTCAGGGACAGACCGGGGACTGTTTGTATTCTCCATGGACGAGTGTaGCTGCTCCAGGAAGCGCTC +
Preference number: 4 (lower is better)
Translates to: RRDSSGRVFRDRPGTVCILHGRV*LLQEAL
Trigger: GAGCGCTTCCTGGAGCAGTCACACTCGTCCATGGAG...AATACAAACAGTCCCCGGTCTGTCCCTGAACACTCTGCCACTGGAATCTCTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000091851.10
CDS-3UTR GCA 90 bp TCAACAGACCAGCTAGACCTCTTGTGGGTATCTTTGGGATGTTGGCAGGGAGAGATCTCTCGGAGCGCGTaGTTCATGCTGCGGGCGTCA +
Preference number: 4 (lower is better)
Translates to: STDQLDLLWVSLGCWQGEISRSA*FMLRAS
Trigger: TGACGCCCGCAGCATGAAGCACGCGCTCCGAGAGAT...CTCTCCCTGCCAACATCCCAAAGATACCCACAAGAGGTCTAGCTGGTCTGTTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091851.10
ENSMUST00000162863.8
CDS-3UTR GCA 90 bp CGCTCAGAGCCACTTTGTGTGCTCTTGACCCACTGTGCAATCTCCAGAAAGAGGGGCTTCAGGTCTCTGTaGAGCACGTTCGCAGAGTGG +
Preference number: 4 (lower is better)
Translates to: RSEPLCVLLTHCAISRKRGFRSL*STFAEW
Trigger: CCACTCTGCGAACGTGCTGCACAGAGACCTGAAGCC...CCTCTTTCTGGAGATTGCACAGTGGGTCAAGAGCACACAAAGTGGCTCTGAGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR CAA 72 bp GCCCAAGGAGATCTCTCAACAGACCAGCTAGACCTCTaGTGGGTATCTTTGGGATGTTGGCAGGGAGAGGGG +
Preference number: 4 (lower is better)
Translates to: AQGDLSTDQLDL*WVSLGCWQGEG
Trigger: CCCCTCTCCCTGCCAACATCCCAAAGATACCCACAAGAGGTCTAGCTGGTCTGTTGAGAGATCTCCTTGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091851.10
ENSMUST00000162863.8
CDS-3UTR TCA 90 bp GTGGAGGCTGTAGGCACAGGCCTGGGAGATGTTTACCTCAATTTACCCACAGCCGCACCTCGTACACCTTaGCAATGTTGTCGTGGTCCA +
Preference number: 4 (lower is better)
Translates to: VEAVGTGLGDVYLNLPTAAPRTP*QCCRGP
Trigger: TGGACCACGACAACATTGTCAAGGTGTACGAGGTGC...GGCTGTGGGTAAATTGAGGTAAACATCTCCCAGGCCTGTGCCTACAGCCTCCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR TCA 90 bp CATTCAGGTCGCCCAGTTTGTTTTCCGGGAGGTCCTCAGGTTTGGTGCAGAGCTATCTGCTCCAGCTCGTaGGCCCCTTGTGTGAGTAAT +
Preference number: 4 (lower is better)
Translates to: HSGRPVCFPGGPQVWCRAICSSS*APCVSN
Trigger: ATTACTCACACAAGGGGCTCACGAGCTGGAGCAGAT...AGCTCTGCACCAAACCTGAGGACCTCCCGGAAAACAAACTGGGCGACCTGAATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162863.8
CDS-3UTR GCA 90 bp TCTTTCTGGGTTTCTTGTTCCAGGGTTGCTAGCTCTCAGGCCATTCCTTTAGGGGCGCGTGCTTCATGCTaGGGGCGTCACTCAGAACGA +
Preference number: 4 (lower is better)
Translates to: SFWVSCSRVASSQAIPLGARASC*GRHSER
Trigger: TCGTTCTGAGTGACGCCCGCAGCATGAAGCACGCGC...CCCTAAAGGAATGGCCTGAGAGCTAGCAACCCTGGAACAAGAAACCCAGAAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR GCA 90 bp GTGGAGGCTGTAGGCACAGGCCTGGGAGATGTTTACCTCAATTTACCCACAGCCTGCTCTGTGAGTCCTTaGGTGGGTCCACCTGAACAT +
Preference number: 4 (lower is better)
Translates to: VEAVGTGLGDVYLNLPTACSVSP*VGPPEH
Trigger: ATGTTCAGGTGGACCCACGCAAGGACTCACAGAGCA...GGCTGTGGGTAAATTGAGGTAAACATCTCCCAGGCCTGTGCCTACAGCCTCCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000091851.10
CDS-3UTR CCA 90 bp GGGAGGAGAGATTCCAGTGGCAGAGTGTTCAGGGACAGACCGGGGACTGTTTGTTTGACAATGTTGTCGTaGTCCAGGCGCCGGATGATT +
Preference number: 4 (lower is better)
Translates to: GRRDSSGRVFRDRPGTVCLTMLS*SRRRMI
Trigger: AATCATCCGGCGCCTGGACCACGACAACATTGTCAA...ACAAACAGTCCCCGGTCTGTCCCTGAACACTCTGCCACTGGAATCTCTCCTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091851.10
ENSMUST00000162863.8
CDS-3UTR CCA 90 bp TTTGTAGTCGCAGGACCGTCCATAGTCGGCCTCGAAGGCGCGCTCCATGGACGATTTTGTGTAGTTATTTaGGGACAGGAGCAGTCTCGG +
Preference number: 4 (lower is better)
Translates to: FVVAGPSIVGLEGALHGRFCVVI*GQEQSR
Trigger: CCGAGACTGCTCCTGTCCCCAAATAACTACACAAAA...TCGTCCATGGAGCGCGCCTTCGAGGCCGACTATGGACGGTCCTGCGACTACAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159162.2
CDS-3UTR TCA 90 bp GCTTCTCTGGGCCCAAATGTCCATTTGAGACTAAGTGGGTCACGTGGCTTGGAACAGAGTGGATGTACTTaGGCCCACGGAGCAGCTGAT +
Preference number: 4 (lower is better)
Translates to: ASLGPNVHLRLSGSRGLEQSGCT*AHGAAD
Trigger: ATCAGCTGCTCCGTGGGCTCAAGTACATCCACTCTG...TTCCAAGCCACGTGACCCACTTAGTCTCAAATGGACATTTGGGCCCAGAGAAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR TCA 90 bp AACGGCTTCTCTGGGCCCAAATGTCCATTTGAGACTAAGTGGGTCACGTGGCTTCAGAGTGGATGTACTTaGGCCCACGGAGCAGCTGAT +
Preference number: 4 (lower is better)
Translates to: NGFSGPKCPFETKWVTWLQSGCT*AHGAAD
Trigger: ATCAGCTGCTCCGTGGGCTCAAGTACATCCACTCTG...AAGCCACGTGACCCACTTAGTCTCAAATGGACATTTGGGCCCAGAGAAGCCGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR TCA 90 bp TCTTTCTGGGTTTCTTGTTCCAGGGTTGCTAGCTCTCAGGCCATTCCTTTAGGGAGGACGGCATCACCCTaGGCAGCTCCTCCTTGTCTT +
Preference number: 4 (lower is better)
Translates to: SFWVSCSRVASSQAIPLGRTASP*AAPPCL
Trigger: AAGACAAGGAGGAGCTGCTCAGGGTGATGCCGTCCT...CCCTAAAGGAATGGCCTGAGAGCTAGCAACCCTGGAACAAGAAACCCAGAAAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000091851.10
CDS-3UTR GCA 90 bp CAAAAACCCAGAGTGACCCCAGCAGAGGAAGACATTATACTGTGGTCAGACACTGCGCGTGCTTCATGCTaGGGGCGTCACTCAGAACGA +
Preference number: 4 (lower is better)
Translates to: QKPRVTPAEEDIILWSDTARASC*GRHSER
Trigger: TCGTTCTGAGTGACGCCCGCAGCATGAAGCACGCGC...AGTGTCTGACCACAGTATAATGTCTTCCTCTGCTGGGGTCACTCTGGGTTTTTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR GCA 90 bp CCAAGGAGATCTCTCAACAGACCAGCTAGACCTCTTGTGGGTATCTTTGGGATGGGCTTCAGGTCTCTGTaGAGCACGTTCGCAGAGTGG +
Preference number: 4 (lower is better)
Translates to: PRRSLNRPARPLVGIFGMGFRSL*STFAEW
Trigger: CCACTCTGCGAACGTGCTGCACAGAGACCTGAAGCC...CATCCCAAAGATACCCACAAGAGGTCTAGCTGGTCTGTTGAGAGATCTCCTTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091851.10
ENSMUST00000162863.8
CDS-3UTR CCA 90 bp TTTCTGACCCCTCTACTCTTGCAGGGCGTAGACTGCTGCCCTAGATCCCTTTCTCATACCCGTAGACGCTaGCGATGCAGTCACCTTTCT +
Preference number: 4 (lower is better)
Translates to: FLTPLLLQGVDCCPRSLSHTRRR*RCSHLS
Trigger: AGAAAGGTGACTGCATCGCCAGCGTCTACGGGTATG...AGAAAGGGATCTAGGGCAGCAGTCTACGCCCTGCAAGAGTAGAGGGGTCAGAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR CCA 90 bp TTCAGGTCGCCCAGTTTGTTTTCCGGGAGGTCCTCAGGTTTGGTGCAGAGCTTTCATACCCGTAGACGCTaGCGATGCAGTCACCTTTCT +
Preference number: 4 (lower is better)
Translates to: FRSPSLFSGRSSGLVQSFHTRRR*RCSHLS
Trigger: AGAAAGGTGACTGCATCGCCAGCGTCTACGGGTATG...AAAGCTCTGCACCAAACCTGAGGACCTCCCGGAAAACAAACTGGGCGACCTGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR CAA 72 bp GAAACTGTCTGCAAGCTGTTTCTGACCCCTCTACTCTaGCAGGGCGTAGACTGCTGCCCTAGATCCCTTTCT +
Preference number: 4 (lower is better)
Translates to: ETVCKLFLTPLL*QGVDCCPRSLS
Trigger: AGAAAGGGATCTAGGGCAGCAGTCTACGCCCTGCAAGAGTAGAGGGGTCAGAAACAGCTTGCAGACAGTTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR TCA 90 bp GTAGACTGCTGCCCTAGATCCCTTTCTTCCCTTGCACACAATCTCAACAGACCTGGAGCAGCTGATACATaGACAGCTTGGCGTGGTCCT +
Preference number: 4 (lower is better)
Translates to: VDCCPRSLSSLAHNLNRPGAADT*TAWRGP
Trigger: AGGACCACGCCAAGCTGTTCATGTATCAGCTGCTCC...AGGTCTGTTGAGATTGTGTGCAAGGGAAGAAAGGGATCTAGGGCAGCAGTCTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR GCA 90 bp GTGGAGGCTGTAGGCACAGGCCTGGGAGATGTTTACCTCAATTTACCCACAGCCTTGATCCACGATCCTTaGCAACCCGAAATCCCCAAT +
Preference number: 4 (lower is better)
Translates to: VEAVGTGLGDVYLNLPTALIHDP*QPEIPN
Trigger: ATTGGGGATTTCGGGTTGGCAAGGATCGTGGATCAA...GGCTGTGGGTAAATTGAGGTAAACATCTCCCAGGCCTGTGCCTACAGCCTCCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR CCA 90 bp TTTCTGACCCCTCTACTCTTGCAGGGCGTAGACTGCTGCCCTAGATCCCTTTCTTTGACAATGTTGTCGTaGTCCAGGCGCCGGATGATT +
Preference number: 4 (lower is better)
Translates to: FLTPLLLQGVDCCPRSLSLTMLS*SRRRMI
Trigger: AATCATCCGGCGCCTGGACCACGACAACATTGTCAA...AGAAAGGGATCTAGGGCAGCAGTCTACGCCCTGCAAGAGTAGAGGGGTCAGAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR CCA 90 bp GGGAGGAGAGATTCCAGTGGCAGAGTGTTCAGGGACAGACCGGGGACTGTTTGTTTTTGTGTAGTTATTTaGGGACAGGAGCAGTCTCGG +
Preference number: 4 (lower is better)
Translates to: GRRDSSGRVFRDRPGTVCFCVVI*GQEQSR
Trigger: CCGAGACTGCTCCTGTCCCCAAATAACTACACAAAA...ACAAACAGTCCCCGGTCTGTCCCTGAACACTCTGCCACTGGAATCTCTCCTCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000091851.10
CDS-3UTR CCA 90 bp ACAAGAGGGATTCTTGTGATTGCTGTCTTCAAACTCACCCATGTACAATATCTACGCGCTGCACCTCGCTaGCGTCCTGGCACCGGTCAG +
Preference number: 4 (lower is better)
Translates to: TRGILVIAVFKLTHVQYLRAAPR*RPGTGQ
Trigger: CTGACCGGTGCCAGGACGCCAGCGAGGTGCAGCGCG...TAGATATTGTACATGGGTGAGTTTGAAGACAGCAATCACAAGAATCCCTCTTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000091851.10
CDS-3UTR TCA 90 bp CCCTCGGAGGACAAATGGCACATAAGGAGTGGTGTGCATTGCATTGTCTTAAAGCAGAGTGGATGTACTTaGGCCCACGGAGCAGCTGAT +
Preference number: 4 (lower is better)
Translates to: PSEDKWHIRSGVHCIVLKQSGCT*AHGAAD
Trigger: ATCAGCTGCTCCGTGGGCTCAAGTACATCCACTCTG...CTTTAAGACAATGCAATGCACACCACTCCTTATGTGCCATTTGTCCTCCGAGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091851.10
ENSMUST00000162863.8
CDS-3UTR TCA 90 bp TCTGACCAAAAACCCAGAGTGACCCCAGCAGAGGAAGACATTATACTGTGGTCAAGAGCATTTTCCCCGTaGGCATCTCTGCCAGGATGC +
Preference number: 4 (lower is better)
Translates to: SDQKPRVTPAEEDIILWSRAFSP*ASLPGC
Trigger: GCATCCTGGCAGAGATGCTCACGGGGAAAATGCTCT...TGACCACAGTATAATGTCTTCCTCTGCTGGGGTCACTCTGGGTTTTTGGTCAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
CDS-3UTR GCA 90 bp CCAAGGAGATCTCTCAACAGACCAGCTAGACCTCTTGTGGGTATCTTTGGGATGCAGGATGCAGCCAGCTaGCCACATATCGATGGCTTT +
Preference number: 4 (lower is better)
Translates to: PRRSLNRPARPLVGIFGMQDAAS*PHIDGF
Trigger: AAAGCCATCGATATGTGGGCAGCTGGCTGCATCCTG...CATCCCAAAGATACCCACAAGAGGTCTAGCTGGTCTGTTGAGAGATCTCCTTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000091851.10
CDS-3UTR CCA 90 bp GAGCACGGAAGTGGTCCAGCTTTCTGGATGGGGATCCTGCTCCGGGAGTTTTCCCTGCCCACATATCGATaGCTTTTGTGTAGTTATTTG +
Preference number: 4 (lower is better)
Translates to: EHGSGPAFWMGILLREFSLPTYR*LLCSYL
Trigger: CAAATAACTACACAAAAGCCATCGATATGTGGGCAG...GGAAAACTCCCGGAGCAGGATCCCCATCCAGAAAGCTGGACCACTTCCGTGCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
CDS-3UTR CCA 90 bp CCAAGGAGATCTCTCAACAGACCAGCTAGACCTCTTGTGGGTATCTTTGGGATGCTTGTCCAGGTAGGATaGAGACCCCACTTTGTAGTC +
Preference number: 4 (lower is better)
Translates to: PRRSLNRPARPLVGIFGMLVQVG*RPHFVV
Trigger: GACTACAAAGTGGGGTCTCCATCCTACCTGGACAAG...CATCCCAAAGATACCCACAAGAGGTCTAGCTGGTCTGTTGAGAGATCTCCTTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000091851.10
CDS-3UTR TCA 90 bp ACTTGGAGAGTCATAGAACTATGTCTGGTGACTAGGAGAAAGAAACTAGTTCTGACAGCACCAGCCCGTTaGCCCCAAAGCCAAGGGGTT +
Preference number: 4 (lower is better)
Translates to: TWRVIELCLVTRRKKLVLTAPAR*PQSQGV
Trigger: AACCCCTTGGCTTTGGGGTCAACGGGCTGGTGCTGT...CAGAACTAGTTTCTTTCTCCTAGTCACCAGACATAGTTCTATGACTCTCCAAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR GCA 90 bp ACTTGGAGAGTCATAGAACTATGTCTGGTGACTAGGAGAAAGAAACTAGTTCTGATCTCTCGGAGCGCGTaGTTCATGCTGCGGGCGTCA +
Preference number: 4 (lower is better)
Translates to: TWRVIELCLVTRRKKLVLISRSA*FMLRAS
Trigger: TGACGCCCGCAGCATGAAGCACGCGCTCCGAGAGAT...CAGAACTAGTTTCTTTCTCCTAGTCACCAGACATAGTTCTATGACTCTCCAAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR GCA 90 bp CCAAGGAGATCTCTCAACAGACCAGCTAGACCTCTTGTGGGTATCTTTGGGATGTTGATCCACGATCCTTaGCAACCCGAAATCCCCAAT +
Preference number: 4 (lower is better)
Translates to: PRRSLNRPARPLVGIFGMLIHDP*QPEIPN
Trigger: ATTGGGGATTTCGGGTTGGCAAGGATCGTGGATCAA...CATCCCAAAGATACCCACAAGAGGTCTAGCTGGTCTGTTGAGAGATCTCCTTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091851.10
ENSMUST00000162863.8
CDS-3UTR TCA 90 bp CAAACTCACCCATGTACAATATCTATTGGGGAACGAGTCAGGAAAGTGCATAGGGCACCTCGTACACCTTaGCAATGTTGTCGTGGTCCA +
Preference number: 4 (lower is better)
Translates to: QTHPCTISIGERVRKVHRAPRTP*QCCRGP
Trigger: TGGACCACGACAACATTGTCAAGGTGTACGAGGTGC...CCTATGCACTTTCCTGACTCGTTCCCCAATAGATATTGTACATGGGTGAGTTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR GCA 90 bp CAAAAACCCAGAGTGACCCCAGCAGAGGAAGACATTATACTGTGGTCAGACACTTTGATCCACGATCCTTaGCAACCCGAAATCCCCAAT +
Preference number: 4 (lower is better)
Translates to: QKPRVTPAEEDIILWSDTLIHDP*QPEIPN
Trigger: ATTGGGGATTTCGGGTTGGCAAGGATCGTGGATCAA...AGTGTCTGACCACAGTATAATGTCTTCCTCTGCTGGGGTCACTCTGGGTTTTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR GCA 90 bp ACTTGGAGAGTCATAGAACTATGTCTGGTGACTAGGAGAAAGAAACTAGTTCTGATGGACGAGTGTGACTaGTCCAGGAAGCGCTCGGAG +
Preference number: 4 (lower is better)
Translates to: TWRVIELCLVTRRKKLVLMDECD*SRKRSE
Trigger: CTCCGAGCGCTTCCTGGAGCAGTCACACTCGTCCAT...CAGAACTAGTTTCTTTCTCCTAGTCACCAGACATAGTTCTATGACTCTCCAAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000091851.10
CDS-3UTR TCA 90 bp GGAATCTTCCCTCCTAGCTCATTTGTTTTTATGGAAGGCACCTTATTGCTTTCTGGAGCAGCTGATACATaGACAGCTTGGCGTGGTCCT +
Preference number: 4 (lower is better)
Translates to: GIFPPSSFVFMEGTLLLSGAADT*TAWRGP
Trigger: AGGACCACGCCAAGCTGTTCATGTATCAGCTGCTCC...AGAAAGCAATAAGGTGCCTTCCATAAAAACAAATGAGCTAGGAGGGAAGATTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR TCA 90 bp GGAATCTTCCCTCCTAGCTCATTTGTTTTTATGGAAGGCACCTTATTGCTTTCTCGAAATCCCCAATCTTaGGCACAAGGTCCTCCGTGC +
Preference number: 4 (lower is better)
Translates to: GIFPPSSFVFMEGTLLLSRNPQS*AQGPPC
Trigger: GCACGGAGGACCTTGTGCTCAAGATTGGGGATTTCG...AGAAAGCAATAAGGTGCCTTCCATAAAAACAAATGAGCTAGGAGGGAAGATTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR TCA 90 bp GAATCTTCCCTCCTAGCTCATTTGTTTTTATGGAAGGCACCTTATTGCTTTCTCCGAAATCCCCAATCTTaGGCACAAGGTCCTCCGTGC +
Preference number: 4 (lower is better)
Translates to: ESSLLAHLFLWKAPYCFLRNPQS*AQGPPC
Trigger: GCACGGAGGACCTTGTGCTCAAGATTGGGGATTTCG...GAGAAAGCAATAAGGTGCCTTCCATAAAAACAAATGAGCTAGGAGGGAAGATTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR CCA 90 bp ACAAGAGGGATTCTTGTGATTGCTGTCTTCAAACTCACCCATGTACAATATCTAATGAACAGCTTGGCGTaGTCCTCAGTCAGCGTGCCC +
Preference number: 4 (lower is better)
Translates to: TRGILVIAVFKLTHVQYLMNSLA*SSVSVP
Trigger: GGGCACGCTGACTGAGGACCACGCCAAGCTGTTCAT...TAGATATTGTACATGGGTGAGTTTGAAGACAGCAATCACAAGAATCCCTCTTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR CCA 90 bp AACGGCTTCTCTGGGCCCAAATGTCCATTTGAGACTAAGTGGGTCACGTGGCTTCTGCCCACATATCGATaGCTTTTGTGTAGTTATTTG +
Preference number: 4 (lower is better)
Translates to: NGFSGPKCPFETKWVTWLLPTYR*LLCSYL
Trigger: CAAATAACTACACAAAAGCCATCGATATGTGGGCAG...AAGCCACGTGACCCACTTAGTCTCAAATGGACATTTGGGCCCAGAGAAGCCGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
CDS-3UTR TCA 90 bp AAGAGGGATTCTTGTGATTGCTGTCTTCAAACTCACCCATGTACAATATCTATTCCGCCATTCCAGATCTaGGGACAGGCTCACAGGATA +
Preference number: 4 (lower is better)
Translates to: KRDSCDCCLQTHPCTISIPPFQI*GQAHRI
Trigger: TATCCTGTGAGCCTGTCCTCAGATCTGGAATGGCGG...AATAGATATTGTACATGGGTGAGTTTGAAGACAGCAATCACAAGAATCCCTCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000091851.10
3UTR CAA 72 bp ATTGCTGTCTTCAAACTCACCCATGTACAATATCTATaGGGGAACGAGTCAGGAAAGTGCATAGGGCATGCA +
Preference number: 4 (lower is better)
Translates to: IAVFKLTHVQYL*GNESGKCIGHA
Trigger: TGCATGCCCTATGCACTTTCCTGACTCGTTCCCCAATAGATATTGTACATGGGTGAGTTTGAAGACAGCAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
3UTR CAA 72 bp TCCATCTCCATAGCTGACTCTTTGGGACACTTGAGGTaGGGACCCCTTTTTAAGCTCCTAGTTTATCTTTCT +
Preference number: 4 (lower is better)
Translates to: SISIADSLGHLR*GPLFKLLVYLS
Trigger: AGAAAGATAAACTAGGAGCTTAAAAAGGGGTCCCAACCTCAAGTGTCCCAAAGAGTCAGCTATGGAGATGGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000091851.10
ENSMUST00000162863.8
3UTR CAA 72 bp GTCTGTCTTAACTTAAGCTACCAGGGTGGGACTACTTaGAATCCCTTTCTTTGTCTTGGGTTTTCCATCTCC +
Preference number: 4 (lower is better)
Translates to: VCLNLSYQGGTT*NPFLCLGFSIS
Trigger: GGAGATGGAAAACCCAAGACAAAGAAAGGGATTCAAAGTAGTCCCACCCTGGTAGCTTAAGTTAAGACAGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091851.10
ENSMUST00000162863.8
3UTR CAA 72 bp CCTCCTAGCTCATTTGTTTTTATGGAAGGCACCTTATaGCTTTCTCTACAAATGAGCAATTTGTGCCAAGAA +
Preference number: 4 (lower is better)
Translates to: PPSSFVFMEGTL*LSLQMSNLCQE
Trigger: TTCTTGGCACAAATTGCTCATTTGTAGAGAAAGCAATAAGGTGCCTTCCATAAAAACAAATGAGCTAGGAGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR CAA 90 bp CTGGTCCAGGGGCAGGGGCTTGGGACACAGGCTTCTGACACCATTAGGCTGGTGACGTCCGGGAGCAGCTaGCGCAGTGGCCTCTTCACC +
Preference number: 5 (lower is better)
Translates to: LVQGQGLGTQASDTIRLVTSGSS*RSGLFT
Trigger: GGTGAAGAGGCCACTGCGCAAGCTGCTCCCGGACGT...CACCAGCCTAATGGTGTCAGAAGCCTGTGTCCCAAGCCCCTGCCCCTGGACCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000091851.10
CDS-3UTR CAA 90 bp CGGCCTCGAAGGCGCGCTCCATGGACGAGTGTGACTGCTCCAGGAAGCGCTCGGAGCACCTCGTACACCTaGACAATGTTGTCGTGGTCC +
Preference number: 5 (lower is better)
Translates to: RPRRRAPWTSVTAPGSARSTSYT*TMLSWS
Trigger: GGACCACGACAACATTGTCAAGGTGTACGAGGTGCT...CCGAGCGCTTCCTGGAGCAGTCACACTCGTCCATGGAGCGCGCCTTCGAGGCCG
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS TCA 90 bp GATCTTCTTCACGGCCACCTTCCGGCAAGCCCTGCTGTCCGTAGCTaGCAGCACCAGCCCGTTGACCCCAAAGCCAAGGGGTTGGAAGTC +
Preference number: 5 (lower is better)
Translates to: DLLHGHLPASPAVRS*QHQPVDPKAKGLEV
Trigger: GACTTCCAACCCCTTGGCTTTGGGGTCAACGGGCTGGTGCTGTCAGCTACGGACAGCAGGGCTTGCCGGAAGGTGGCCGTGAAGAAGATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR CAA 90 bp CCAACGCAGCAGAGAGGGGATGAAGGAGTGCGAGGGAGCACGGAAGTGGTCCAGCCCAAAGCCAAGGGGTaGGAAGTCAATGAAGCGCCC +
Preference number: 5 (lower is better)
Translates to: PTQQRGDEGVRGSTEVVQPKAKG*EVNEAP
Trigger: GGGCGCTTCATTGACTTCCAACCCCTTGGCTTTGGG...CTGGACCACTTCCGTGCTCCCTCGCACTCCTTCATCCCCTCTCTGCTGCGTTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR CAA 90 bp CTGGTCCAGGGGCAGGGGCTTGGGACACAGGCTTCTGACACCATTAGGCTGGTGCCCAAAGCCAAGGGGTaGGAAGTCAATGAAGCGCCC +
Preference number: 5 (lower is better)
Translates to: LVQGQGLGTQASDTIRLVPKAKG*EVNEAP
Trigger: GGGCGCTTCATTGACTTCCAACCCCTTGGCTTTGGG...CACCAGCCTAATGGTGTCAGAAGCCTGTGTCCCAAGCCCCTGCCCCTGGACCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR CAA 90 bp TTTGTAGTCGCAGGACCGTCCATAGTCGGCCTCGAAGGCGCGCTCCATGGACGATACACCTTGACAATGTaGTCGTGGTCCAGGCGCCGG +
Preference number: 5 (lower is better)
Translates to: FVVAGPSIVGLEGALHGRYTLTM*SWSRRR
Trigger: CCGGCGCCTGGACCACGACAACATTGTCAAGGTGTA...TCGTCCATGGAGCGCGCCTTCGAGGCCGACTATGGACGGTCCTGCGACTACAAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS TCA 90 bp GCTCCTCCTTGTCTTCCTCCCGGACCACAGGGATGGTGTCTAGGATaGGCTGCATCTGCTCCAGCTCGTGAGCCCCAGCGAAGAGCATTT +
Preference number: 5 (lower is better)
Translates to: APPCLPPGPQGWCLG*AASAPAREPQRRAF
Trigger: AAATGCTCTTCGCTGGGGCTCACGAGCTGGAGCAGATGCAGCTCATCCTAGACACCATCCCTGTGGTCCGGGAGGAAGACAAGGAGGAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000091851.10
CDS GCA 90 bp TTGTCGTGGTCCAGGCGCCGGATGATTTTGATCTCTCGGAGCGCGTaGTTCATGCTGCGGGCGTCACTCAGAACGATCTTCTTCACGGCC +
Preference number: 5 (lower is better)
Translates to: LSWSRRRMILISRSA*FMLRASLRTIFFTA
Trigger: GGCCGTGAAGAAGATCGTTCTGAGTGACGCCCGCAGCATGAAGCACGCGCTCCGAGAGATCAAAATCATCCGGCGCCTGGACCACGACAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS CCA 90 bp CTCCCCTTGGGTCCCAGCACCTCGTACACCTTGACAATGTTGTCGTaGTCCAGGCGCCGGATGATTTTGATCTCTCGGAGCGCGTGCTTC +
Preference number: 5 (lower is better)
Translates to: LPLGPSTSYTLTMLS*SRRRMILISRSACF
Trigger: GAAGCACGCGCTCCGAGAGATCAAAATCATCCGGCGCCTGGACCACGACAACATTGTCAAGGTGTACGAGGTGCTGGGACCCAAGGGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR CAA 90 bp CACGGAAGTGGTCCAGCTTTCTGGATGGGGATCCTGCTCCGGGAGTTTTCCCGCCCGAAATCCCCAATCTaGAGCACAAGGTCCTCCGTG +
Preference number: 5 (lower is better)
Translates to: HGSGPAFWMGILLREFSRPKSPI*STRSSV
Trigger: CACGGAGGACCTTGTGCTCAAGATTGGGGATTTCGG...GCGGGAAAACTCCCGGAGCAGGATCCCCATCCAGAAAGCTGGACCACTTCCGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR CAA 90 bp CTGGTCCAGGGGCAGGGGCTTGGGACACAGGCTTCTGACACCATTAGGCTGGTGGTTGATCCACGATCCTaGCCAACCCGAAATCCCCAA +
Preference number: 5 (lower is better)
Translates to: LVQGQGLGTQASDTIRLVVDPRS*PTRNPQ
Trigger: TTGGGGATTTCGGGTTGGCAAGGATCGTGGATCAAC...CACCAGCCTAATGGTGTCAGAAGCCTGTGTCCCAAGCCCCTGCCCCTGGACCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR CAA 90 bp AGGGGGAGGACTGGCACGCTCAGAGCCACTTTGTGTGCTCTTGACCCACTGTGCAGCACCTCGTACACCTaGACAATGTTGTCGTGGTCC +
Preference number: 5 (lower is better)
Translates to: RGRTGTLRATLCALDPLCSTSYT*TMLSWS
Trigger: GGACCACGACAACATTGTCAAGGTGTACGAGGTGCT...GCACAGTGGGTCAAGAGCACACAAAGTGGCTCTGAGCGTGCCAGTCCTCCCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR CAA 90 bp AGAGTGACCCCAGCAGAGGAAGACATTATACTGTGGTCAGACACTGGTCCAGGGTGCAGATCGCTCCCCTaGGGTCCCAGCACCTCGTAC +
Preference number: 5 (lower is better)
Translates to: RVTPAEEDIILWSDTGPGCRSLP*GPSTSY
Trigger: GTACGAGGTGCTGGGACCCAAGGGGAGCGATCTGCA...CCCTGGACCAGTGTCTGACCACAGTATAATGTCTTCCTCTGCTGGGGTCACTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR CAA 90 bp GGCTTCTCTGGGCCCAAATGTCCATTTGAGACTAAGTGGGTCACGTGGCTTGGATGCAGATCGCTCCCCTaGGGTCCCAGCACCTCGTAC +
Preference number: 5 (lower is better)
Translates to: GFSGPKCPFETKWVTWLGCRSLP*GPSTSY
Trigger: GTACGAGGTGCTGGGACCCAAGGGGAGCGATCTGCA...TCCAAGCCACGTGACCCACTTAGTCTCAAATGGACATTTGGGCCCAGAGAAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR CAA 90 bp CCAACGCAGCAGAGAGGGGATGAAGGAGTGCGAGGGAGCACGGAAGTGGTCCAGAGTCTCCATGTACTCTaGGACGATATAGGCCACGCT +
Preference number: 5 (lower is better)
Translates to: PTQQRGDEGVRGSTEVVQSLHVL*DDIGHA
Trigger: AGCGTGGCCTATATCGTCCAAGAGTACATGGAGACT...CTGGACCACTTCCGTGCTCCCTCGCACTCCTTCATCCCCTCTCTGCTGCGTTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR CAA 90 bp TTCTTTCTCCCCGGATCCGCGTGTGTTCTGCTAACCCCAACGCAGCAGAGAGGGCCGAAATCCCCAATCTaGAGCACAAGGTCCTCCGTG +
Preference number: 5 (lower is better)
Translates to: FFLPGSACVLLTPTQQRGPKSPI*STRSSV
Trigger: CACGGAGGACCTTGTGCTCAAGATTGGGGATTTCGG...CCCTCTCTGCTGCGTTGGGGTTAGCAGAACACACGCGGATCCGGGGAGAAAGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR CAA 90 bp TTCTTTCTCCCCGGATCCGCGTGTGTTCTGCTAACCCCAACGCAGCAGAGAGGGACGCTCAGAGCCACTTaGTGTGCTCTTGACCCACTG +
Preference number: 5 (lower is better)
Translates to: FFLPGSACVLLTPTQQRGTLRAT*CALDPL
Trigger: CAGTGGGTCAAGAGCACACAAAGTGGCTCTGAGCGT...CCCTCTCTGCTGCGTTGGGGTTAGCAGAACACACGCGGATCCGGGGAGAAAGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000091851.10
CDS-3UTR CAA 90 bp CCAAGGAGATCTCTCAACAGACCAGCTAGACCTCTTGTGGGTATCTTTGGGATGCCCCATCGATGGGTGTaGGGTGTCCCGGGGGTGAGG +
Preference number: 5 (lower is better)
Translates to: PRRSLNRPARPLVGIFGMPHRWV*GVPGVR
Trigger: CCTCACCCCCGGGACACCCAACACCCATCGATGGGG...CATCCCAAAGATACCCACAAGAGGTCTAGCTGGTCTGTTGAGAGATCTCCTTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000091851.10
CDS-3UTR CAA 90 bp GCTCCATGGACGAGTGTGACTGCTCCAGGAAGCGCTCGGAGCTGCTCTGTGAGTAGTCTCCATGTACTCTaGGACGATATAGGCCACGCT +
Preference number: 5 (lower is better)
Translates to: APWTSVTAPGSARSCSVSSLHVL*DDIGHA
Trigger: AGCGTGGCCTATATCGTCCAAGAGTACATGGAGACT...ACTCACAGAGCAGCTCCGAGCGCTTCCTGGAGCAGTCACACTCGTCCATGGAGC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR CAA 90 bp CGCGCCACAGTAGCTTGTCCAGGTAGGATGGAGACCCCACTTTGTAGTCGCAGGGTTGATCCACGATCCTaGCCAACCCGAAATCCCCAA +
Preference number: 5 (lower is better)
Translates to: RATVACPGRMETPLCSRRVDPRS*PTRNPQ
Trigger: TTGGGGATTTCGGGTTGGCAAGGATCGTGGATCAAC...CCTGCGACTACAAAGTGGGGTCTCCATCCTACCTGGACAAGCTACTGTGGCGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR CAA 90 bp GTCAGACACTGGTCCAGGGGCAGGGGCTTGGGACACAGGCTTCTGACACCATTAGAGACCGGTACCACTTaGTCACCAACCCTTCTGACA +
Preference number: 5 (lower is better)
Translates to: VRHWSRGRGLGHRLLTPLETGTT*SPTLLT
Trigger: TGTCAGAAGGGTTGGTGACAAAGTGGTACCGGTCTC...TAATGGTGTCAGAAGCCTGTGTCCCAAGCCCCTGCCCCTGGACCAGTGTCTGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
CDS-3UTR CAA 90 bp TTTCTGACCCCTCTACTCTTGCAGGGCGTAGACTGCTGCCCTAGATCCCTTTCTCCCAAAGCCAAGGGGTaGGAAGTCAATGAAGCGCCC +
Preference number: 5 (lower is better)
Translates to: FLTPLLLQGVDCCPRSLSPKAKG*EVNEAP
Trigger: GGGCGCTTCATTGACTTCCAACCCCTTGGCTTTGGG...AGAAAGGGATCTAGGGCAGCAGTCTACGCCCTGCAAGAGTAGAGGGGTCAGAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR CAA 90 bp AGGAGAGATTCCAGTGGCAGAGTGTTCAGGGACAGACCGGGGACTGTTTGTATTTACACCTTGACAATGTaGTCGTGGTCCAGGCGCCGG +
Preference number: 5 (lower is better)
Translates to: RRDSSGRVFRDRPGTVCIYTLTM*SWSRRR
Trigger: CCGGCGCCTGGACCACGACAACATTGTCAAGGTGTA...AATACAAACAGTCCCCGGTCTGTCCCTGAACACTCTGCCACTGGAATCTCTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091851.10
ENSMUST00000162863.8
CDS-3UTR CAA 90 bp GCTTGTCCAGGTAGGATGGAGACCCCACTTTGTAGTCGCAGGACCGTCCATAGTGTTGATCCACGATCCTaGCCAACCCGAAATCCCCAA +
Preference number: 5 (lower is better)
Translates to: ACPGRMETPLCSRRTVHSVDPRS*PTRNPQ
Trigger: TTGGGGATTTCGGGTTGGCAAGGATCGTGGATCAAC...ACTATGGACGGTCCTGCGACTACAAAGTGGGGTCTCCATCCTACCTGGACAAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR CAA 90 bp TTTCTGACCCCTCTACTCTTGCAGGGCGTAGACTGCTGCCCTAGATCCCTTTCTGAGACCGGTACCACTTaGTCACCAACCCTTCTGACA +
Preference number: 5 (lower is better)
Translates to: FLTPLLLQGVDCCPRSLSETGTT*SPTLLT
Trigger: TGTCAGAAGGGTTGGTGACAAAGTGGTACCGGTCTC...AGAAAGGGATCTAGGGCAGCAGTCTACGCCCTGCAAGAGTAGAGGGGTCAGAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
CDS CCA 90 bp GATGCAGCCAGCTGCCCACATATCGATGGCTTTTGTGTAGTTATTTaGGGACAGGAGCAGTCTCGGAGACCGGTACCACTTTGTCACCAA +
Preference number: 5 (lower is better)
Translates to: DAASCPHIDGFCVVI*GQEQSRRPVPLCHQ
Trigger: TTGGTGACAAAGTGGTACCGGTCTCCGAGACTGCTCCTGTCCCCAAATAACTACACAAAAGCCATCGATATGTGGGCAGCTGGCTGCATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
CDS-3UTR CAA 90 bp TCTGACCAAAAACCCAGAGTGACCCCAGCAGAGGAAGACATTATACTGTGGTCACCGAAATCCCCAATCTaGAGCACAAGGTCCTCCGTG +
Preference number: 5 (lower is better)
Translates to: SDQKPRVTPAEEDIILWSPKSPI*STRSSV
Trigger: CACGGAGGACCTTGTGCTCAAGATTGGGGATTTCGG...TGACCACAGTATAATGTCTTCCTCTGCTGGGGTCACTCTGGGTTTTTGGTCAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR CAA 90 bp ACAAGAGGGATTCTTGTGATTGCTGTCTTCAAACTCACCCATGTACAATATCTATGCAGATCGCTCCCCTaGGGTCCCAGCACCTCGTAC +
Preference number: 5 (lower is better)
Translates to: TRGILVIAVFKLTHVQYLCRSLP*GPSTSY
Trigger: GTACGAGGTGCTGGGACCCAAGGGGAGCGATCTGCA...TAGATATTGTACATGGGTGAGTTTGAAGACAGCAATCACAAGAATCCCTCTTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR CAA 90 bp CAAACTCACCCATGTACAATATCTATTGGGGAACGAGTCAGGAAAGTGCATAGGTTCAGGTCGCCCAGTTaGTTTTCCGGGAGGTCCTCA +
Preference number: 5 (lower is better)
Translates to: QTHPCTISIGERVRKVHRFRSPS*FSGRSS
Trigger: TGAGGACCTCCCGGAAAACAAACTGGGCGACCTGAA...CCTATGCACTTTCCTGACTCGTTCCCCAATAGATATTGTACATGGGTGAGTTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000091851.10
CDS-3UTR CAA 90 bp ATCTTCCCTCCTAGCTCATTTGTTTTTATGGAAGGCACCTTATTGCTTTCTCTAAGGCGCCGGATGATTTaGATCTCTCGGAGCGCGTGC +
Preference number: 5 (lower is better)
Translates to: IFPPSSFVFMEGTLLLSLRRRMI*ISRSAC
Trigger: GCACGCGCTCCGAGAGATCAAAATCATCCGGCGCCT...TAGAGAAAGCAATAAGGTGCCTTCCATAAAAACAAATGAGCTAGGAGGGAAGAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR CAA 90 bp GGAATCTTCCCTCCTAGCTCATTTGTTTTTATGGAAGGCACCTTATTGCTTTCTTACACCTTGACAATGTaGTCGTGGTCCAGGCGCCGG +
Preference number: 5 (lower is better)
Translates to: GIFPPSSFVFMEGTLLLSYTLTM*SWSRRR
Trigger: CCGGCGCCTGGACCACGACAACATTGTCAAGGTGTA...AGAAAGCAATAAGGTGCCTTCCATAAAAACAAATGAGCTAGGAGGGAAGATTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR CAA 90 bp AAGAGGGATTCTTGTGATTGCTGTCTTCAAACTCACCCATGTACAATATCTATTAGGCGCCGGATGATTTaGATCTCTCGGAGCGCGTGC +
Preference number: 5 (lower is better)
Translates to: KRDSCDCCLQTHPCTISIRRRMI*ISRSAC
Trigger: GCACGCGCTCCGAGAGATCAAAATCATCCGGCGCCT...AATAGATATTGTACATGGGTGAGTTTGAAGACAGCAATCACAAGAATCCCTCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR CAA 90 bp TGCTGTCTTCAAACTCACCCATGTACAATATCTATTGGGGAACGAGTCAGGAAACTTTTGTGTAGTTATTaGGGGACAGGAGCAGTCTCG +
Preference number: 5 (lower is better)
Translates to: CCLQTHPCTISIGERVRKLLCSY*GTGAVS
Trigger: CGAGACTGCTCCTGTCCCCAAATAACTACACAAAAG...TTTCCTGACTCGTTCCCCAATAGATATTGTACATGGGTGAGTTTGAAGACAGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
CDS-3UTR CAA 90 bp AAGAGGGATTCTTGTGATTGCTGTCTTCAAACTCACCCATGTACAATATCTATTTCAATGGCTTCACTGTaGACGTCCGGGAGCAGCTTG +
Preference number: 5 (lower is better)
Translates to: KRDSCDCCLQTHPCTISISMASL*TSGSSL
Trigger: CAAGCTGCTCCCGGACGTCAACAGTGAAGCCATTGA...AATAGATATTGTACATGGGTGAGTTTGAAGACAGCAATCACAAGAATCCCTCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000091851.10
CDS-3UTR CAA 90 bp AAGAGGGATTCTTGTGATTGCTGTCTTCAAACTCACCCATGTACAATATCTATTAGCACCTCGTACACCTaGACAATGTTGTCGTGGTCC +
Preference number: 5 (lower is better)
Translates to: KRDSCDCCLQTHPCTISISTSYT*TMLSWS
Trigger: GGACCACGACAACATTGTCAAGGTGTACGAGGTGCT...AATAGATATTGTACATGGGTGAGTTTGAAGACAGCAATCACAAGAATCCCTCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR CAA 90 bp ACAAGAGGGATTCTTGTGATTGCTGTCTTCAAACTCACCCATGTACAATATCTAAGTCTCCATGTACTCTaGGACGATATAGGCCACGCT +
Preference number: 5 (lower is better)
Translates to: TRGILVIAVFKLTHVQYLSLHVL*DDIGHA
Trigger: AGCGTGGCCTATATCGTCCAAGAGTACATGGAGACT...TAGATATTGTACATGGGTGAGTTTGAAGACAGCAATCACAAGAATCCCTCTTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS-3UTR CAA 90 bp TCTTGTGATTGCTGTCTTCAAACTCACCCATGTACAATATCTATTGGGGAACGACTTTTGTGTAGTTATTaGGGGACAGGAGCAGTCTCG +
Preference number: 5 (lower is better)
Translates to: SCDCCLQTHPCTISIGERLLCSY*GTGAVS
Trigger: CGAGACTGCTCCTGTCCCCAAATAACTACACAAAAG...TCGTTCCCCAATAGATATTGTACATGGGTGAGTTTGAAGACAGCAATCACAAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
CDS TCA 72 bp CACGGCCACCTTCCGGCAAGCCCTGCTGTCCGTAGCTaGCAGCACCAGCCCGTTGACCCCAAAGCCAAGGGG +
Preference number: 6 (lower is better)
Translates to: HGHLPASPAVRS*QHQPVDPKAKG
Trigger: CCCCTTGGCTTTGGGGTCAACGGGCTGGTGCTGTCAGCTACGGACAGCAGGGCTTGCCGGAAGGTGGCCGTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS CAA 90 bp AGATCGCTCCCCTTGGGTCCCAGCACCTCGTACACCTTGACAATGTaGTCGTGGTCCAGGCGCCGGATGATTTTGATCTCTCGGAGCGCG +
Preference number: 6 (lower is better)
Translates to: RSLPLGPSTSYTLTM*SWSRRRMILISRSA
Trigger: CGCGCTCCGAGAGATCAAAATCATCCGGCGCCTGGACCACGACAACATTGTCAAGGTGTACGAGGTGCTGGGACCCAAGGGGAGCGATCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS CAA 90 bp TCGCCCTGCAGATCGCTCCCCTTGGGTCCCAGCACCTCGTACACCTaGACAATGTTGTCGTGGTCCAGGCGCCGGATGATTTTGATCTCT +
Preference number: 6 (lower is better)
Translates to: SPCRSLPLGPSTSYT*TMLSWSRRRMILIS
Trigger: AGAGATCAAAATCATCCGGCGCCTGGACCACGACAACATTGTCAAGGTGTACGAGGTGCTGGGACCCAAGGGGAGCGATCTGCAGGGCGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS GCA 72 bp TCCAGGCGCCGGATGATTTTGATCTCTCGGAGCGCGTaGTTCATGCTGCGGGCGTCACTCAGAACGATCTTC +
Preference number: 6 (lower is better)
Translates to: SRRRMILISRSA*FMLRASLRTIF
Trigger: GAAGATCGTTCTGAGTGACGCCCGCAGCATGAAGCACGCGCTCCGAGAGATCAAAATCATCCGGCGCCTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS CAA 72 bp CAAGCCCTGCTGTCCGTAGCTGACAGCACCAGCCCGTaGACCCCAAAGCCAAGGGGTTGGAAGTCAATGAAG +
Preference number: 6 (lower is better)
Translates to: QALLSVADSTSP*TPKPRGWKSMK
Trigger: CTTCATTGACTTCCAACCCCTTGGCTTTGGGGTCAACGGGCTGGTGCTGTCAGCTACGGACAGCAGGGCTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS CAA 72 bp TTGACAATGTTGTCGTGGTCCAGGCGCCGGATGATTTaGATCTCTCGGAGCGCGTGCTTCATGCTGCGGGCG +
Preference number: 6 (lower is better)
Translates to: LTMLSWSRRRMI*ISRSACFMLRA
Trigger: CGCCCGCAGCATGAAGCACGCGCTCCGAGAGATCAAAATCATCCGGCGCCTGGACCACGACAACATTGTCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS CAA 72 bp AGATCGCTCCCCTTGGGTCCCAGCACCTCGTACACCTaGACAATGTTGTCGTGGTCCAGGCGCCGGATGATT +
Preference number: 6 (lower is better)
Translates to: RSLPLGPSTSYT*TMLSWSRRRMI
Trigger: AATCATCCGGCGCCTGGACCACGACAACATTGTCAAGGTGTACGAGGTGCTGGGACCCAAGGGGAGCGATCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS CAA 90 bp TCGTACACCTTGACAATGTTGTCGTGGTCCAGGCGCCGGATGATTTaGATCTCTCGGAGCGCGTGCTTCATGCTGCGGGCGTCACTCAGA +
Preference number: 6 (lower is better)
Translates to: SYTLTMLSWSRRRMI*ISRSACFMLRASLR
Trigger: TCTGAGTGACGCCCGCAGCATGAAGCACGCGCTCCGAGAGATCAAAATCATCCGGCGCCTGGACCACGACAACATTGTCAAGGTGTACGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS CCA 72 bp GGTCCCAGCACCTCGTACACCTTGACAATGTTGTCGTaGTCCAGGCGCCGGATGATTTTGATCTCTCGGAGC +
Preference number: 6 (lower is better)
Translates to: GPSTSYTLTMLS*SRRRMILISRS
Trigger: GCTCCGAGAGATCAAAATCATCCGGCGCCTGGACCACGACAACATTGTCAAGGTGTACGAGGTGCTGGGACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS CAA 72 bp CCCTTGGGTCCCAGCACCTCGTACACCTTGACAATGTaGTCGTGGTCCAGGCGCCGGATGATTTTGATCTCT +
Preference number: 6 (lower is better)
Translates to: PLGPSTSYTLTM*SWSRRRMILIS
Trigger: AGAGATCAAAATCATCCGGCGCCTGGACCACGACAACATTGTCAAGGTGTACGAGGTGCTGGGACCCAAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS CAA 72 bp CTAAACTTGAAGAGCTCGCCCTGCAGATCGCTCCCCTaGGGTCCCAGCACCTCGTACACCTTGACAATGTTG +
Preference number: 6 (lower is better)
Translates to: LNLKSSPCRSLP*GPSTSYTLTML
Trigger: CAACATTGTCAAGGTGTACGAGGTGCTGGGACCCAAGGGGAGCGATCTGCAGGGCGAGCTCTTCAAGTTTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS CAA 72 bp CTCCAGCAGGCACGCCAGGTCAGTCTCCATGTACTCTaGGACGATATAGGCCACGCTAAACTTGAAGAGCTC +
Preference number: 6 (lower is better)
Translates to: LQQARQVSLHVL*DDIGHAKLEEL
Trigger: GAGCTCTTCAAGTTTAGCGTGGCCTATATCGTCCAAGAGTACATGGAGACTGACCTGGCGTGCCTGCTGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
ENSMUST00000162863.8
CDS CAA 72 bp TTGGGGACAGGAGCAGTCTCGGAGACCGGTACCACTTaGTCACCAACCCTTCTGACAGATAACCCTTGTGTG +
Preference number: 6 (lower is better)
Translates to: LGTGAVSETGTT*SPTLLTDNPCV
Trigger: CACACAAGGGTTATCTGTCAGAAGGGTTGGTGACAAAGTGGTACCGGTCTCCGAGACTGCTCCTGTCCCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
CDS CAA 90 bp GGATGCAGCCAGCTGCCCACATATCGATGGCTTTTGTGTAGTTATTaGGGGACAGGAGCAGTCTCGGAGACCGGTACCACTTTGTCACCA +
Preference number: 6 (lower is better)
Translates to: GCSQLPTYRWLLCSY*GTGAVSETGTTLSP
Trigger: TGGTGACAAAGTGGTACCGGTCTCCGAGACTGCTCCTGTCCCCAAATAACTACACAAAAGCCATCGATATGTGGGCAGCTGGCTGCATCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
CDS CAA 72 bp CAGCTGCCCACATATCGATGGCTTTTGTGTAGTTATTaGGGGACAGGAGCAGTCTCGGAGACCGGTACCACT +
Preference number: 6 (lower is better)
Translates to: QLPTYRWLLCSY*GTGAVSETGTT
Trigger: AGTGGTACCGGTCTCCGAGACTGCTCCTGTCCCCAAATAACTACACAAAAGCCATCGATATGTGGGCAGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
CDS CCA 72 bp AGCTGCCCACATATCGATGGCTTTTGTGTAGTTATTTaGGGACAGGAGCAGTCTCGGAGACCGGTACCACTT +
Preference number: 6 (lower is better)
Translates to: SCPHIDGFCVVI*GQEQSRRPVPL
Trigger: AAGTGGTACCGGTCTCCGAGACTGCTCCTGTCCCCAAATAACTACACAAAAGCCATCGATATGTGGGCAGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2
CDS CAA 90 bp TGTAGTTATTTGGGGACAGGAGCAGTCTCGGAGACCGGTACCACTTaGTCACCAACCCTTCTGACAGATAACCCTTGTGTGAGTAATGTT +
Preference number: 6 (lower is better)
Translates to: CSYLGTGAVSETGTT*SPTLLTDNPCVSNV
Trigger: AACATTACTCACACAAGGGTTATCTGTCAGAAGGGTTGGTGACAAAGTGGTACCGGTCTCCGAGACTGCTCCTGTCCCCAAATAACTACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091851.10
ENSMUST00000159162.2