RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MAPK1IP1L (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021840

Ensembl transcript IDs: ENSMUST00000164235.3, ENSMUST00000166743.9, ENSMUST00000227554.2, ENSMUST00000228058.2

Found 135 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AAGACTCTAGATCTGACCGGAAGCTGGAAACCCCCAGGCCCAGACTaGCGGGGTGAGAAGGGAAGATGCAAGAAGCAGACTACACCAAAA +
Preference number: 1 (lower is better)
Translates to: KTLDLTGSWKPPGPD*RGEKGRCKKQTTPK
Trigger: TTTTGGTGTAGTCTGCTTCTTGCATCTTCCCTTCTCACCCCGCCAGTCTGGGCCTGGGGGTTTCCAGCTTCCGGTCAGATCTAGAGTCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR CCA 90 bp AGAGCTCCATCCCGGATGTGCACACGGACAGCGTCAGTCCTCAGATaGGCTCTGCAGATAGAAGCAAGCAGGAAATCTCAGTCCCAATTG +
Preference number: 1 (lower is better)
Translates to: RAPSRMCTRTASVLR*ALQIEASRKSQSQL
Trigger: CAATTGGGACTGAGATTTCCTGCTTGCTTCTATCTGCAGAGCCCATCTGAGGACTGACGCTGTCCGTGTGCACATCCGGGATGGAGCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR GCA 90 bp TGCTGGCCTTGCTACTCAGATGGCTGGGTGACAGTTCAACAGCGCTaGCTTACGCATTTCGCTCATTTTCCTTGTTTCCTCCCGTTGGAC +
Preference number: 1 (lower is better)
Translates to: CWPCYSDGWVTVQQR*LTHFAHFPCFLPLD
Trigger: GTCCAACGGGAGGAAACAAGGAAAATGAGCGAAATGCGTAAGGCAGCGCTGTTGAACTGTCACCCAGCCATCTGAGTAGCAAGGCCAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR GCA 90 bp CCCACGTGGTGGGAAGGCCAGCAATATTTTTGGGTCACCAGTTACTaGCCCCATAGCTCTGCATTCCCAAACAAGCTCAAGAGTAACGCT +
Preference number: 1 (lower is better)
Translates to: PTWWEGQQYFWVTSY*PHSSAFPNKLKSNA
Trigger: AGCGTTACTCTTGAGCTTGTTTGGGAATGCAGAGCTATGGGGGCAGTAACTGGTGACCCAAAAATATTGCTGGCCTTCCCACCACGTGGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR TCA 90 bp GCCACCCGTGAAGTGTGTCATGAGAAACAGACTGTTAACCACCACTaGCAGCAAAACCAACAAGGTCGGGAGGGAGGCTTTGTAAAGAAC +
Preference number: 1 (lower is better)
Translates to: ATREVCHEKQTVNHH*QQNQQGREGGFVKN
Trigger: GTTCTTTACAAAGCCTCCCTCCCGACCTTGTTGGTTTTGCTGTCAGTGGTGGTTAACAGTCTGTTTCTCATGACACACTTCACGGGTGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR CCA 90 bp GGCTCCATATCCAAGAAGCTCCCAGGGGAGAACCAGCAATCTTTGTaGAGTCCAAAAGAAGTTGTTACTTCAGCAAAGCCTAATAGGATG +
Preference number: 1 (lower is better)
Translates to: GSISKKLPGENQQSL*SPKEVVTSAKPNRM
Trigger: CATCCTATTAGGCTTTGCTGAAGTAACAACTTCTTTTGGACTCCACAAAGATTGCTGGTTCTCCCCTGGGAGCTTCTTGGATATGGAGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR TCA 90 bp CATTCCTCTAGAGCTCCGTCAGAGCAAGAATCTGTCCTTAGATCATaGAGCAATCTTGATAGGAGAGAACTGGATATAATGGTTGAATTA +
Preference number: 1 (lower is better)
Translates to: HSSRAPSEQESVLRS*SNLDRRELDIMVEL
Trigger: TAATTCAACCATTATATCCAGTTCTCTCCTATCAAGATTGCTTCATGATCTAAGGACAGATTCTTGCTCTGACGGAGCTCTAGAGGAATG
40% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR CCA 90 bp AACAAGAACACCAATGACCCTACAAAGAACAACAAAACCCCACACTaGCTGATGAACTTGGCAACTGATAATTATTGGCTTAGAGTTATG +
Preference number: 1 (lower is better)
Translates to: NKNTNDPTKNNKTPH*LMNLATDNYWLRVM
Trigger: CATAACTCTAAGCCAATAATTATCAGTTGCCAAGTTCATCAGCCAGTGTGGGGTTTTGTTGTTCTTTGTAGGGTCATTGGTGTTCTTGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR GCA 90 bp TGTTTCCAAATACAGCAGCAGGTGACAAAACCTATTATCTTCCATTaGTTACAGTATAAACATACATGTCTCAAACCACACTTCAGGCAG +
Preference number: 1 (lower is better)
Translates to: CFQIQQQVTKPIIFH*LQYKHTCLKPHFRQ
Trigger: CTGCCTGAAGTGTGGTTTGAGACATGTATGTTTATACTGTAAGCAATGGAAGATAATAGGTTTTGTCACCTGCTGCTGTATTTGGAAACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR GCA 90 bp ACTGATCAATTAGCTAAGTCCCACCAAAATGTGCAAGGAAATATTTaGATACCATCCTCTGTCCAAACAACTGGTCCCAAAGGAATAATA +
Preference number: 1 (lower is better)
Translates to: TDQLAKSHQNVQGNI*IPSSVQTTGPKGII
Trigger: TATTATTCCTTTGGGACCAGTTGTTTGGACAGAGGATGGTATGCAAATATTTCCTTGCACATTTTGGTGGGACTTAGCTAATTGATCAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228058.2
3UTR TCA 90 bp AATAGTTGCACTGATAAACACTACAATCTTGGAATGATGGTTTTGTaGGACTTCATTTCCATGTATAACCCTGGTTGCCCTGTAATTCTC +
Preference number: 1 (lower is better)
Translates to: NSCTDKHYNLGMMVL*DFISMYNPGCPVIL
Trigger: GAGAATTACAGGGCAACCAGGGTTATACATGGAAATGAAGTCTCACAAAACCATCATTCCAAGATTGTAGTGTTTATCAGTGCAACTATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR-3UTR TCA 90 bp AGCTTAAGAGATCTGACTGCCTCTGCCTCCCAAGTGCTGGGATATCAACGGCATGCCTGCTCTCCTCTCTaGGAGCTATCACTAATCCCC +
Preference number: 2 (lower is better)
Translates to: SLRDLTASASQVLGYQRHACSPL*ELSLIP
Trigger: GGGGATTAGTGATAGCTCTCAGAGAGGAGAGCAGGC...ATGCCGTTGATATCCCAGCACTTGGGAGGCAGAGGCAGTCAGATCTCTTAAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR-3UTR GCA 90 bp AAGGCCAGCAATATTTTTGGGTCACCAGTTACTGCCCCCATAGCTCTGCATTCCTCGGTGTGCTGGCCTTaGTACTCAGATGGCTGGGTG +
Preference number: 2 (lower is better)
Translates to: KASNIFGSPVTAPIALHSSVCWP*YSDGWV
Trigger: CACCCAGCCATCTGAGTAGCAAGGCCAGCACACCGA...GGAATGCAGAGCTATGGGGGCAGTAACTGGTGACCCAAAAATATTGCTGGCCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR-3UTR CCA 90 bp ACAATCTGTCTTTTCAGTAGACCAGTCATGGCCTACACTGTTTGTTCTGAAAGCGATCTGACCGGAAGCTaGAAACCCCCAGGCCCAGAC +
Preference number: 2 (lower is better)
Translates to: TICLFSRPVMAYTVCSESDLTGS*KPPGPD
Trigger: GTCTGGGCCTGGGGGTTTCCAGCTTCCGGTCAGATC...GCTTTCAGAACAAACAGTGTAGGCCATGACTGGTCTACTGAAAAGACAGATTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR-3UTR GCA 90 bp TTGTGGAGTCCAAAAGAAGTTGTTACTTCAGCAAAGCCTAATAGGATGGCATCCTCGGTGTGCTGGCCTTaGTACTCAGATGGCTGGGTG +
Preference number: 2 (lower is better)
Translates to: LWSPKEVVTSAKPNRMASSVCWP*YSDGWV
Trigger: CACCCAGCCATCTGAGTAGCAAGGCCAGCACACCGA...GGATGCCATCCTATTAGGCTTTGCTGAAGTAACAACTTCTTTTGGACTCCACAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR-3UTR GCA 90 bp AAGGCCAGCAATATTTTTGGGTCACCAGTTACTGCCCCCATAGCTCTGCATTCCGGTGAGAAGGGAAGATaGAAGAAGCAGACTACACCA +
Preference number: 2 (lower is better)
Translates to: KASNIFGSPVTAPIALHSGEKGR*KKQTTP
Trigger: TGGTGTAGTCTGCTTCTTGCATCTTCCCTTCTCACC...GGAATGCAGAGCTATGGGGGCAGTAACTGGTGACCCAAAAATATTGCTGGCCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR-3UTR CCA 90 bp AAGGCCAGCAATATTTTTGGGTCACCAGTTACTGCCCCCATAGCTCTGCATTCCTTAAGTGATTGTTCTTaGTTCTGTGGGGTGCGGTGG +
Preference number: 2 (lower is better)
Translates to: KASNIFGSPVTAPIALHSLSDCS*FCGVRW
Trigger: CCACCGCACCCCACAGAACCAAGAACAATCACTTAA...GGAATGCAGAGCTATGGGGGCAGTAACTGGTGACCCAAAAATATTGCTGGCCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR-3UTR CCA 90 bp CAGGACAGCCTGCTCTCCTCTCTGAGAGCTATCACTAATCCCCTTCCTCTGGTGCACTGTAGTTTCCATTaGCAGAATTCTGAAAGTTCC +
Preference number: 2 (lower is better)
Translates to: QDSLLSSLRAITNPLPLVHCSFH*QNSESS
Trigger: GGAACTTTCAGAATTCTGCCAATGGAAACTACAGTG...CACCAGAGGAAGGGGATTAGTGATAGCTCTCAGAGAGGAGAGCAGGCTGTCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR-3UTR TCA 90 bp CCAGTCATGGCCTACACTGTTTGTTCTGAAAGCAGGATTATTCTTGGGTTAAAAACTCAGATGGCTGGGTaGCAGTTCAACAGCGCTGCC +
Preference number: 2 (lower is better)
Translates to: PVMAYTVCSESRIILGLKTQMAG*QFNSAA
Trigger: GGCAGCGCTGTTGAACTGTCACCCAGCCATCTGAGT...TTTTAACCCAAGAATAATCCTGCTTTCAGAACAAACAGTGTAGGCCATGACTGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR-3UTR GCA 90 bp CCAGTCATGGCCTACACTGTTTGTTCTGAAAGCAGGATTATTCTTGGGTTAAAACTTGGTTCTGTGGGGTaGGGTGGTAGTGGTGGTGGT +
Preference number: 2 (lower is better)
Translates to: PVMAYTVCSESRIILGLKLGSVG*GGSGGG
Trigger: ACCACCACCACTACCACCGCACCCCACAGAACCAAG...TTTTAACCCAAGAATAATCCTGCTTTCAGAACAAACAGTGTAGGCCATGACTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR-3UTR GCA 90 bp GTTGTTACTTCAGCAAAGCCTAATAGGATGGCATCCAATAGAGAAACCAATGGACTTGGTTCTGTGGGGTaGGGTGGTAGTGGTGGTGGT +
Preference number: 2 (lower is better)
Translates to: VVTSAKPNRMASNRETNGLGSVG*GGSGGG
Trigger: ACCACCACCACTACCACCGCACCCCACAGAACCAAG...TCCATTGGTTTCTCTATTGGATGCCATCCTATTAGGCTTTGCTGAAGTAACAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR-3UTR CCA 90 bp TTACTTCAGCAAAGCCTAATAGGATGGCATCCAATAGAGAAACCAATGGAAGAAGATCTGACCGGAAGCTaGAAACCCCCAGGCCCAGAC +
Preference number: 2 (lower is better)
Translates to: LLQQSLIGWHPIEKPMEEDLTGS*KPPGPD
Trigger: GTCTGGGCCTGGGGGTTTCCAGCTTCCGGTCAGATC...TTCTTCCATTGGTTTCTCTATTGGATGCCATCCTATTAGGCTTTGCTGAAGTAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR CAA 90 bp TCAGGCTCCATATCCAAGAAGCTCCCAGGGGAGAACCAGCAATCTTaGTGGAGTCCAAAAGAAGTTGTTACTTCAGCAAAGCCTAATAGG +
Preference number: 2 (lower is better)
Translates to: SGSISKKLPGENQQS*WSPKEVVTSAKPNR
Trigger: CCTATTAGGCTTTGCTGAAGTAACAACTTCTTTTGGACTCCACAAAGATTGCTGGTTCTCCCCTGGGAGCTTCTTGGATATGGAGCCTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR-3UTR GCA 90 bp GTAGACCAAGCTGTCCTTGAGCTTAAGAGATCTGACTGCCTCTGCCTCCCAAGTAAGTTCTTTCACAAATaGCCTCAACCAACAGCGAAA +
Preference number: 2 (lower is better)
Translates to: VDQAVLELKRSDCLCLPSKFFHK*PQPTAK
Trigger: TTTCGCTGTTGGTTGAGGGCATTTGTGAAAGAACTT...ACTTGGGAGGCAGAGGCAGTCAGATCTCTTAAGCTCAAGGACAGCTTGGTCTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR-3UTR GCA 90 bp AGCTTAAGAGATCTGACTGCCTCTGCCTCCCAAGTGCTGGGATATCAACGGCATAAGTTCTTTCACAAATaGCCTCAACCAACAGCGAAA +
Preference number: 2 (lower is better)
Translates to: SLRDLTASASQVLGYQRHKFFHK*PQPTAK
Trigger: TTTCGCTGTTGGTTGAGGGCATTTGTGAAAGAACTT...ATGCCGTTGATATCCCAGCACTTGGGAGGCAGAGGCAGTCAGATCTCTTAAGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR-3UTR CCA 90 bp AGCTTAAGAGATCTGACTGCCTCTGCCTCCCAAGTGCTGGGATATCAACGGCATCACTGTAGTTTCCATTaGCAGAATTCTGAAAGTTCC +
Preference number: 2 (lower is better)
Translates to: SLRDLTASASQVLGYQRHHCSFH*QNSESS
Trigger: GGAACTTTCAGAATTCTGCCAATGGAAACTACAGTG...ATGCCGTTGATATCCCAGCACTTGGGAGGCAGAGGCAGTCAGATCTCTTAAGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR-3UTR CCA 90 bp ACATGTCTCAAACCACACTTCAGGCAGCTTAACTTAAAATGCATAGACTGTAAACTAATCCCCTTCCTCTaGTGGCTGCACCTGTGGCCC +
Preference number: 2 (lower is better)
Translates to: TCLKPHFRQLNLKCIDCKLIPFL*WLHLWP
Trigger: GGGCCACAGGTGCAGCCACCAGAGGAAGGGGATTAG...TTTACAGTCTATGCATTTTAAGTTAAGCTGCCTGAAGTGTGGTTTGAGACATGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR CAA 90 bp AGATGGGCTCTGCAGATAGAAGCAAGCAGGAAATCTCAGTCCCAATaGCCATCGTCCACTGTAGTTTCCATTGGCAGAATTCTGAAAGTT +
Preference number: 2 (lower is better)
Translates to: RWALQIEASRKSQSQ*PSSTVVSIGRILKV
Trigger: AACTTTCAGAATTCTGCCAATGGAAACTACAGTGGACGATGGCAATTGGGACTGAGATTTCCTGCTTGCTTCTATCTGCAGAGCCCATCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR-3UTR TCA 90 bp ACTGGCGGGGTGAGAAGGGAAGATGCAAGAAGCAGACTACACCAAAATGCCAAAGCTTCTACATTTATCTaGTTGTACCCACGTGATGTT +
Preference number: 2 (lower is better)
Translates to: TGGVRREDARSRLHQNAKASTFI*LYPRDV
Trigger: AACATCACGTGGGTACAATCAGATAAATGTAGAAGC...TTTGGCATTTTGGTGTAGTCTGCTTCTTGCATCTTCCCTTCTCACCCCGCCAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR-3UTR GCA 90 bp GTAGACCAAGCTGTCCTTGAGCTTAAGAGATCTGACTGCCTCTGCCTCCCAAGTACCAGCCATTATATATaGTTTCTCGTGCATACACAT +
Preference number: 2 (lower is better)
Translates to: VDQAVLELKRSDCLCLPSTSHYI*FLVHTH
Trigger: ATGTGTATGCACGAGAAAGCATATATAATGGCTGGT...ACTTGGGAGGCAGAGGCAGTCAGATCTCTTAAGCTCAAGGACAGCTTGGTCTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR-3UTR CCA 90 bp ATCTTCCATTGCTTACAGTATAAACATACATGTCTCAAACCACACTTCAGGCAGGTCAGTGTCAACCAGTaGCAGCTGGGCCTTTACCCA +
Preference number: 2 (lower is better)
Translates to: IFHCLQYKHTCLKPHFRQVSVNQ*QLGLYP
Trigger: TGGGTAAAGGCCCAGCTGCCACTGGTTGACACTGAC...CTGCCTGAAGTGTGGTTTGAGACATGTATGTTTATACTGTAAGCAATGGAAGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR CAA 90 bp AGCTCCCAGGGGAGAACCAGCAATCTTTGTGGAGTCCAAAAGAAGTaGTTACTTCAGCAAAGCCTAATAGGATGGCATCCAATAGAGAAA +
Preference number: 2 (lower is better)
Translates to: SSQGRTSNLCGVQKK*LLQQSLIGWHPIEK
Trigger: TTTCTCTATTGGATGCCATCCTATTAGGCTTTGCTGAAGTAACAACTTCTTTTGGACTCCACAAAGATTGCTGGTTCTCCCCTGGGAGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR-3UTR TCA 90 bp ACTGGCGGGGTGAGAAGGGAAGATGCAAGAAGCAGACTACACCAAAATGCCAAAAGGAGCTCAAAATGTTaGGGAGTCATGTTTCAATTA +
Preference number: 2 (lower is better)
Translates to: TGGVRREDARSRLHQNAKRSSKC*GVMFQL
Trigger: TAATTGAAACATGACTCCTCAACATTTTGAGCTCCT...TTTGGCATTTTGGTGTAGTCTGCTTCTTGCATCTTCCCTTCTCACCCCGCCAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR-3UTR GCA 90 bp TGTAGTGCCAGCATTCCTCTAGAGCTCCGTCAGAGCAAGAATCTGTCCTTAGATACCAGCCATTATATATaGTTTCTCGTGCATACACAT +
Preference number: 2 (lower is better)
Translates to: CSASIPLELRQSKNLSLDTSHYI*FLVHTH
Trigger: ATGTGTATGCACGAGAAAGCATATATAATGGCTGGT...ATCTAAGGACAGATTCTTGCTCTGACGGAGCTCTAGAGGAATGCTGGCACTACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR-3UTR GCA 90 bp GAGAACCAGCAATCTTTGTGGAGTCCAAAAGAAGTTGTTACTTCAGCAAAGCCTTCGAGCCAAGTTCCCTaGTTAATTAGGAAGGTGTCT +
Preference number: 2 (lower is better)
Translates to: ENQQSLWSPKEVVTSAKPSSQVP*LIRKVS
Trigger: AGACACCTTCCTAATTAAGCAGGGAACTTGGCTCGA...AGGCTTTGCTGAAGTAACAACTTCTTTTGGACTCCACAAAGATTGCTGGTTCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR-3UTR GCA 90 bp ACAATCTGTCTTTTCAGTAGACCAGTCATGGCCTACACTGTTTGTTCTGAAAGCTCGAGCCAAGTTCCCTaGTTAATTAGGAAGGTGTCT +
Preference number: 2 (lower is better)
Translates to: TICLFSRPVMAYTVCSESSSQVP*LIRKVS
Trigger: AGACACCTTCCTAATTAAGCAGGGAACTTGGCTCGA...GCTTTCAGAACAAACAGTGTAGGCCATGACTGGTCTACTGAAAAGACAGATTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR-3UTR TCA 90 bp CCAGTCATGGCCTACACTGTTTGTTCTGAAAGCAGGATTATTCTTGGGTTAAAATTCTTGATTCTTTCCTaGACCCAGAAACACCCTACC +
Preference number: 2 (lower is better)
Translates to: PVMAYTVCSESRIILGLKFLILS*TQKHPT
Trigger: GGTAGGGTGTTTCTGGGTTCAGGAAAGAATCAAGAA...TTTTAACCCAAGAATAATCCTGCTTTCAGAACAAACAGTGTAGGCCATGACTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR-3UTR CCA 90 bp TTACTTCAGCAAAGCCTAATAGGATGGCATCCAATAGAGAAACCAATGGAAGAATTAAGTGATTGTTCTTaGTTCTGTGGGGTGCGGTGG +
Preference number: 2 (lower is better)
Translates to: LLQQSLIGWHPIEKPMEELSDCS*FCGVRW
Trigger: CCACCGCACCCCACAGAACCAAGAACAATCACTTAA...TTCTTCCATTGGTTTCTCTATTGGATGCCATCCTATTAGGCTTTGCTGAAGTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR-3UTR CCA 90 bp CCAGTCATGGCCTACACTGTTTGTTCTGAAAGCAGGATTATTCTTGGGTTAAAAAACAAAACCCCACACTaGCTGATGAACTTGGCAACT +
Preference number: 2 (lower is better)
Translates to: PVMAYTVCSESRIILGLKNKTPH*LMNLAT
Trigger: AGTTGCCAAGTTCATCAGCCAGTGTGGGGTTTTGTT...TTTTAACCCAAGAATAATCCTGCTTTCAGAACAAACAGTGTAGGCCATGACTGG
42% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR CAA 90 bp GGCCTTTACCCAGACAAACGGAAACAATCCTGCTACACTGTACACTaGAATAGTTGCACTGATAAACACTACAATCTTGGAATGATGGTT +
Preference number: 2 (lower is better)
Translates to: GLYPDKRKQSCYTVH*NSCTDKHYNLGMMV
Trigger: AACCATCATTCCAAGATTGTAGTGTTTATCAGTGCAACTATTCAAGTGTACAGTGTAGCAGGATTGTTTCCGTTTGTCTGGGTAAAGGCC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR-3UTR TCA 90 bp GAGTTCTTCAACTATATAAAGAGCTTCAGGTTAGCCAGAGTTATGTGGCGAGACGCTTCTACATTTATCTaGTTGTACCCACGTGATGTT +
Preference number: 2 (lower is better)
Translates to: EFFNYIKSFRLARVMWRDASTFI*LYPRDV
Trigger: AACATCACGTGGGTACAATCAGATAAATGTAGAAGC...GTCTCGCCACATAACTCTGGCTAACCTGAAGCTCTTTATATAGTTGAAGAACTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR-3UTR TCA 90 bp ACAATCTGTCTTTTCAGTAGACCAGTCATGGCCTACACTGTTTGTTCTGAAAGCCACATTAAGCACACTTaGATGATTCGCTTCTACATT +
Preference number: 2 (lower is better)
Translates to: TICLFSRPVMAYTVCSESHIKHT*MIRFYI
Trigger: AATGTAGAAGCGAATCATTCAAGTGTGCTTAATGTG...GCTTTCAGAACAAACAGTGTAGGCCATGACTGGTCTACTGAAAAGACAGATTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR-3UTR TCA 90 bp GTTGTTACTTCAGCAAAGCCTAATAGGATGGCATCCAATAGAGAAACCAATGGAAGGAGCTCAAAATGTTaGGGAGTCATGTTTCAATTA +
Preference number: 2 (lower is better)
Translates to: VVTSAKPNRMASNRETNGRSSKC*GVMFQL
Trigger: TAATTGAAACATGACTCCTCAACATTTTGAGCTCCT...TCCATTGGTTTCTCTATTGGATGCCATCCTATTAGGCTTTGCTGAAGTAACAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR-3UTR TCA 90 bp ATCTTCCATTGCTTACAGTATAAACATACATGTCTCAAACCACACTTCAGGCAGCTACACTGTTTGTTCTaGAAGCAGGATTATTCTTGG +
Preference number: 2 (lower is better)
Translates to: IFHCLQYKHTCLKPHFRQLHCLF*KQDYSW
Trigger: CCAAGAATAATCCTGCTTTCAGAACAAACAGTGTAG...CTGCCTGAAGTGTGGTTTGAGACATGTATGTTTATACTGTAAGCAATGGAAGAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR-3UTR TCA 90 bp TTACTTCAGCAAAGCCTAATAGGATGGCATCCAATAGAGAAACCAATGGAAGAACACATTAAGCACACTTaGATGATTCGCTTCTACATT +
Preference number: 2 (lower is better)
Translates to: LLQQSLIGWHPIEKPMEEHIKHT*MIRFYI
Trigger: AATGTAGAAGCGAATCATTCAAGTGTGCTTAATGTG...TTCTTCCATTGGTTTCTCTATTGGATGCCATCCTATTAGGCTTTGCTGAAGTAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR-3UTR TCA 90 bp ATCTTCCATTGCTTACAGTATAAACATACATGTCTCAAACCACACTTCAGGCAGCATGTTTCAATTAAGTaGTTGTTCTTGGTTCTGTGG +
Preference number: 2 (lower is better)
Translates to: IFHCLQYKHTCLKPHFRQHVSIK*LFLVLW
Trigger: CCACAGAACCAAGAACAATCACTTAATTGAAACATG...CTGCCTGAAGTGTGGTTTGAGACATGTATGTTTATACTGTAAGCAATGGAAGAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR-3UTR GCA 90 bp ATGGCCTACACTGTTTGTTCTGAAAGCAGGATTATTCTTGGGTTAAAACAAAACAAGCAGGAACTGAGGTaGAAAGTTCTTTCACAAATG +
Preference number: 2 (lower is better)
Translates to: MAYTVCSESRIILGLKQNKQELR*KVLSQM
Trigger: CATTTGTGAAAGAACTTTGCACCTCAGTTCCTGCTT...GTTTTGTTTTAACCCAAGAATAATCCTGCTTTCAGAACAAACAGTGTAGGCCAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR-3UTR GCA 90 bp ATCTTCCATTGCTTACAGTATAAACATACATGTCTCAAACCACACTTCAGGCAGAAAAACAAGAAAACCTaGTATCCCTTTGATTTCCAC +
Preference number: 2 (lower is better)
Translates to: IFHCLQYKHTCLKPHFRQKNKKT*YPFDFH
Trigger: GTGGAAATCAAAGGGATAGCAGGTTTTCTTGTTTTT...CTGCCTGAAGTGTGGTTTGAGACATGTATGTTTATACTGTAAGCAATGGAAGAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR-3UTR GCA 90 bp ACATGTCTCAAACCACACTTCAGGCAGCTTAACTTAAAATGCATAGACTGTAAAAAAAACAAGAAAACCTaGTATCCCTTTGATTTCCAC +
Preference number: 2 (lower is better)
Translates to: TCLKPHFRQLNLKCIDCKKNKKT*YPFDFH
Trigger: GTGGAAATCAAAGGGATAGCAGGTTTTCTTGTTTTT...TTTACAGTCTATGCATTTTAAGTTAAGCTGCCTGAAGTGTGGTTTGAGACATGT
36% GC, longest homopolymer 8 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR CCA 72 bp GCTGTGAGGGTGAAGACTCTAGATCTGACCGGAAGCTaGAAACCCCCAGGCCCAGACTGGCGGGGTGAGAAG +
Preference number: 3 (lower is better)
Translates to: AVRVKTLDLTGS*KPPGPDWRGEK
Trigger: CTTCTCACCCCGCCAGTCTGGGCCTGGGGGTTTCCAGCTTCCGGTCAGATCTAGAGTCTTCACCCTCACAGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR CCA 72 bp AAGCCCACGCCTCCAGGGCACAGCCAAAAGCCCTGCTaGGGTTCTGAGCATCTTCTCATAAAAGGCCCAGTA +
Preference number: 3 (lower is better)
Translates to: KPTPPGHSQKPC*GSEHLLIKGPV
Trigger: TACTGGGCCTTTTATGAGAAGATGCTCAGAACCCCAGCAGGGCTTTTGGCTGTGCCCTGGAGGCGTGGGCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR CCA 72 bp TCCCGGATGTGCACACGGACAGCGTCAGTCCTCAGATaGGCTCTGCAGATAGAAGCAAGCAGGAAATCTCAG +
Preference number: 3 (lower is better)
Translates to: SRMCTRTASVLR*ALQIEASRKSQ
Trigger: CTGAGATTTCCTGCTTGCTTCTATCTGCAGAGCCCATCTGAGGACTGACGCTGTCCGTGTGCACATCCGGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR GCA 72 bp CAAGCTGTCCTTGAGCTTAAGAGATCTGACTGCCTCTaGCTCCCAAGTGCTGGGATATCAACGGCATGCAAC +
Preference number: 3 (lower is better)
Translates to: QAVLELKRSDCL*LPSAGISTACN
Trigger: GTTGCATGCCGTTGATATCCCAGCACTTGGGAGGCAGAGGCAGTCAGATCTCTTAAGCTCAAGGACAGCTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR GCA 72 bp GTAGACCAAGCTGTCCTTGAGCTTAAGAGATCTGACTaGCTCTGCCTCCCAAGTGCTGGGATATCAACGGCA +
Preference number: 3 (lower is better)
Translates to: VDQAVLELKRSD*LCLPSAGISTA
Trigger: TGCCGTTGATATCCCAGCACTTGGGAGGCAGAGGCAGTCAGATCTCTTAAGCTCAAGGACAGCTTGGTCTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR-3UTR CAA 90 bp AGCTTAAGAGATCTGACTGCCTCTGCCTCCCAAGTGCTGGGATATCAACGGCATCCGAGGACAGGTTTCTaGCTGAGAGCTCCAGAAAAA +
Preference number: 3 (lower is better)
Translates to: SLRDLTASASQVLGYQRHPRTGF*LRAPEK
Trigger: TTTTTCTGGAGCTCTCAGCAAGAAACCTGTCCTCGG...ATGCCGTTGATATCCCAGCACTTGGGAGGCAGAGGCAGTCAGATCTCTTAAGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR-3UTR CAA 90 bp AGCTTAAGAGATCTGACTGCCTCTGCCTCCCAAGTGCTGGGATATCAACGGCATTTAATGGAAGTACCATaGAGAGCACACCACACAGGG +
Preference number: 3 (lower is better)
Translates to: SLRDLTASASQVLGYQRHLMEVP*RAHHTG
Trigger: CCCTGTGTGGTGTGCTCTCAATGGTACTTCCATTAA...ATGCCGTTGATATCCCAGCACTTGGGAGGCAGAGGCAGTCAGATCTCTTAAGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR GCA 72 bp TGCTACTCAGATGGCTGGGTGACAGTTCAACAGCGCTaGCTTACGCATTTCGCTCATTTTCCTTGTTTCCTC +
Preference number: 3 (lower is better)
Translates to: CYSDGWVTVQQR*LTHFAHFPCFL
Trigger: GAGGAAACAAGGAAAATGAGCGAAATGCGTAAGGCAGCGCTGTTGAACTGTCACCCAGCCATCTGAGTAGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR GCA 72 bp GCTCTGCATTCCCAAACAAGCTCAAGAGTAACGCTTTaGTGTGAGGGTGAAGACTCTAGATCTGACCGGAAG +
Preference number: 3 (lower is better)
Translates to: ALHSQTSSRVTL*CEGEDSRSDRK
Trigger: CTTCCGGTCAGATCTAGAGTCTTCACCCTCACAGCAAAGCGTTACTCTTGAGCTTGTTTGGGAATGCAGAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR GCA 72 bp TGGGAAGGCCAGCAATATTTTTGGGTCACCAGTTACTaGCCCCATAGCTCTGCATTCCCAAACAAGCTCAAG +
Preference number: 3 (lower is better)
Translates to: WEGQQYFWVTSY*PHSSAFPNKLK
Trigger: CTTGAGCTTGTTTGGGAATGCAGAGCTATGGGGGCAGTAACTGGTGACCCAAAAATATTGCTGGCCTTCCCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR TCA 72 bp GAAGTGTGTCATGAGAAACAGACTGTTAACCACCACTaGCAGCAAAACCAACAAGGTCGGGAGGGAGGCTTT +
Preference number: 3 (lower is better)
Translates to: EVCHEKQTVNHH*QQNQQGREGGF
Trigger: AAAGCCTCCCTCCCGACCTTGTTGGTTTTGCTGTCAGTGGTGGTTAACAGTCTGTTTCTCATGACACACTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR CCA 72 bp TTACGCATTTCGCTCATTTTCCTTGTTTCCTCCCGTTaGACTCAGCATGGGCAGTCTGACTACCACAGGAAA +
Preference number: 3 (lower is better)
Translates to: LRISLIFLVSSR*TQHGQSDYHRK
Trigger: TTTCCTGTGGTAGTCAGACTGCCCATGCTGAGTCCAACGGGAGGAAACAAGGAAAATGAGCGAAATGCGTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR TCA 72 bp TTCTTTATTACTACAAACAGGGAACTGAGAGGGCTCTaGACTTGTTTAGGGAAGCCTAGAATCGGGCCCAGG +
Preference number: 3 (lower is better)
Translates to: FFITTNRELRGL*TCLGKPRIGPR
Trigger: CCTGGGCCCGATTCTAGGCTTCCCTAAACAAGTTCAGAGCCCTCTCAGTTCCCTGTTTGTAGTAATAAAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164235.3
3UTR CCA 72 bp TCCAAGAAGCTCCCAGGGGAGAACCAGCAATCTTTGTaGAGTCCAAAAGAAGTTGTTACTTCAGCAAAGCCT +
Preference number: 3 (lower is better)
Translates to: SKKLPGENQQSL*SPKEVVTSAKP
Trigger: AGGCTTTGCTGAAGTAACAACTTCTTTTGGACTCCACAAAGATTGCTGGTTCTCCCCTGGGAGCTTCTTGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR-3UTR CAA 90 bp GAAGGCCAGCAATATTTTTGGGTCACCAGTTACTGCCCCCATAGCTCTGCATTCGATCATGAAGCAATCTaGATAGGAGAGAACTGGATA +
Preference number: 3 (lower is better)
Translates to: EGQQYFWVTSYCPHSSAFDHEAI*IGENWI
Trigger: TATCCAGTTCTCTCCTATCAAGATTGCTTCATGATC...GAATGCAGAGCTATGGGGGCAGTAACTGGTGACCCAAAAATATTGCTGGCCTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR GCA 72 bp CAGCTGGGCCTTTACCCAGACAAACGGAAACAATCCTaGTACACTGTACACTTGAATAGTTGCACTGATAAA +
Preference number: 3 (lower is better)
Translates to: QLGLYPDKRKQS*YTVHLNSCTDK
Trigger: TTTATCAGTGCAACTATTCAAGTGTACAGTGTAGCAGGATTGTTTCCGTTTGTCTGGGTAAAGGCCCAGCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR TCA 72 bp AGAGCTCCGTCAGAGCAAGAATCTGTCCTTAGATCATaGAGCAATCTTGATAGGAGAGAACTGGATATAATG +
Preference number: 3 (lower is better)
Translates to: RAPSEQESVLRS*SNLDRRELDIM
Trigger: CATTATATCCAGTTCTCTCCTATCAAGATTGCTTCATGATCTAAGGACAGATTCTTGCTCTGACGGAGCTCT
42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR GCA 72 bp TTAGCTAAGTCCCACCAAAATGTGCAAGGAAATATTTaGATACCATCCTCTGTCCAAACAACTGGTCCCAAA +
Preference number: 3 (lower is better)
Translates to: LAKSHQNVQGNI*IPSSVQTTGPK
Trigger: TTTGGGACCAGTTGTTTGGACAGAGGATGGTATGCAAATATTTCCTTGCACATTTTGGTGGGACTTAGCTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228058.2
3UTR CCA 72 bp ACCAATGACCCTACAAAGAACAACAAAACCCCACACTaGCTGATGAACTTGGCAACTGATAATTATTGGCTT +
Preference number: 3 (lower is better)
Translates to: TNDPTKNNKTPH*LMNLATDNYWL
Trigger: AAGCCAATAATTATCAGTTGCCAAGTTCATCAGCCAGTGTGGGGTTTTGTTGTTCTTTGTAGGGTCATTGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR-3UTR CAA 90 bp CCAGTCATGGCCTACACTGTTTGTTCTGAAAGCAGGATTATTCTTGGGTTAAAAGGAGTCCAAAAGAAGTaGTTACTTCAGCAAAGCCTA +
Preference number: 3 (lower is better)
Translates to: PVMAYTVCSESRIILGLKGVQKK*LLQQSL
Trigger: TAGGCTTTGCTGAAGTAACAACTTCTTTTGGACTCC...TTTTAACCCAAGAATAATCCTGCTTTCAGAACAAACAGTGTAGGCCATGACTGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR-3UTR CAA 90 bp ATGGCCTACACTGTTTGTTCTGAAAGCAGGATTATTCTTGGGTTAAAACAAAACTTAATGGAAGTACCATaGAGAGCACACCACACAGGG +
Preference number: 3 (lower is better)
Translates to: MAYTVCSESRIILGLKQNLMEVP*RAHHTG
Trigger: CCCTGTGTGGTGTGCTCTCAATGGTACTTCCATTAA...GTTTTGTTTTAACCCAAGAATAATCCTGCTTTCAGAACAAACAGTGTAGGCCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR-3UTR CAA 90 bp CCAGTCATGGCCTACACTGTTTGTTCTGAAAGCAGGATTATTCTTGGGTTAAAAGATCATGAAGCAATCTaGATAGGAGAGAACTGGATA +
Preference number: 3 (lower is better)
Translates to: PVMAYTVCSESRIILGLKDHEAI*IGENWI
Trigger: TATCCAGTTCTCTCCTATCAAGATTGCTTCATGATC...TTTTAACCCAAGAATAATCCTGCTTTCAGAACAAACAGTGTAGGCCATGACTGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR-3UTR CAA 90 bp TTACTTCAGCAAAGCCTAATAGGATGGCATCCAATAGAGAAACCAATGGAAGAAGAGGAGCTCAAAATGTaGAGGAGTCATGTTTCAATT +
Preference number: 3 (lower is better)
Translates to: LLQQSLIGWHPIEKPMEEEELKM*RSHVSI
Trigger: AATTGAAACATGACTCCTCAACATTTTGAGCTCCTC...TTCTTCCATTGGTTTCTCTATTGGATGCCATCCTATTAGGCTTTGCTGAAGTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR TCA 72 bp CAGACAAACGGAAACAATCCTGCTACACTGTACACTTaGATAGTTGCACTGATAAACACTACAATCTTGGAA +
Preference number: 3 (lower is better)
Translates to: QTNGNNPATLYT*IVALINTTILE
Trigger: TTCCAAGATTGTAGTGTTTATCAGTGCAACTATTCAAGTGTACAGTGTAGCAGGATTGTTTCCGTTTGTCTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR GCA 72 bp CGGAAACAATCCTGCTACACTGTACACTTGAATAGTTaGACTGATAAACACTACAATCTTGGAATGATGGTT +
Preference number: 3 (lower is better)
Translates to: RKQSCYTVHLNS*TDKHYNLGMMV
Trigger: AACCATCATTCCAAGATTGTAGTGTTTATCAGTGCAACTATTCAAGTGTACAGTGTAGCAGGATTGTTTCCG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR CCA 72 bp CAAAAGAAGTTGTTACTTCAGCAAAGCCTAATAGGATaGCATCCAATAGAGAAACCAATGGAAGAACCTCAA +
Preference number: 3 (lower is better)
Translates to: QKKLLLQQSLIG*HPIEKPMEEPQ
Trigger: TTGAGGTTCTTCCATTGGTTTCTCTATTGGATGCCATCCTATTAGGCTTTGCTGAAGTAACAACTTCTTTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR GCA 72 bp ATACAGCAGCAGGTGACAAAACCTATTATCTTCCATTaGTTACAGTATAAACATACATGTCTCAAACCACAC +
Preference number: 3 (lower is better)
Translates to: IQQQVTKPIIFH*LQYKHTCLKPH
Trigger: GTGTGGTTTGAGACATGTATGTTTATACTGTAAGCAATGGAAGATAATAGGTTTTGTCACCTGCTGCTGTAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
CDS-3UTR GCA 90 bp CAGGACAGCCTGCTCTCCTCTCTGAGAGCTATCACTAATCCCCTTCCTCTGGTGCTCCTGGTGGCACAGTaGCCCACGGAACAGGCGGTG +
Preference number: 4 (lower is better)
Translates to: QDSLLSSLRAITNPLPLVLLVAQ*PTEQAV
Trigger: CACCGCCTGTTCCGTGGGGCACTGTGCCACCAGGAG...CACCAGAGGAAGGGGATTAGTGATAGCTCTCAGAGAGGAGAGCAGGCTGTCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
CDS-3UTR TCA 90 bp CAGGACAGCCTGCTCTCCTCTCTGAGAGCTATCACTAATCCCCTTCCTCTGGTGTGCTGGCGTGGGGTATaGTCCTGCAGGGCCGGGATA +
Preference number: 4 (lower is better)
Translates to: QDSLLSSLRAITNPLPLVCWRGV*SCRAGI
Trigger: TATCCCGGCCCTGCAGGATCATACCCCACGCCAGCA...CACCAGAGGAAGGGGATTAGTGATAGCTCTCAGAGAGGAGAGCAGGCTGTCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
CDS-3UTR GCA 90 bp ACTGGCGGGGTGAGAAGGGAAGATGCAAGAAGCAGACTACACCAAAATGCCAAACTCCTGGTGGCACAGTaGCCCACGGAACAGGCGGTG +
Preference number: 4 (lower is better)
Translates to: TGGVRREDARSRLHQNAKLLVAQ*PTEQAV
Trigger: CACCGCCTGTTCCGTGGGGCACTGTGCCACCAGGAG...TTTGGCATTTTGGTGTAGTCTGCTTCTTGCATCTTCCCTTCTCACCCCGCCAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
CDS-3UTR CCA 90 bp AGCTTAAGAGATCTGACTGCCTCTGCCTCCCAAGTGCTGGGATATCAACGGCATGGTTACTCCACGGGCTaGAGCCTGGCCACCCTTGAG +
Preference number: 4 (lower is better)
Translates to: SLRDLTASASQVLGYQRHGYSTG*SLATLE
Trigger: CTCAAGGGTGGCCAGGCTCCAGCCCGTGGAGTAACC...ATGCCGTTGATATCCCAGCACTTGGGAGGCAGAGGCAGTCAGATCTCTTAAGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
CDS-3UTR TCA 90 bp AGCTTAAGAGATCTGACTGCCTCTGCCTCCCAAGTGCTGGGATATCAACGGCATGAGCCTGGCCACCCTTaGGAAGAATGGCCAGCTTTT +
Preference number: 4 (lower is better)
Translates to: SLRDLTASASQVLGYQRHEPGHP*EEWPAF
Trigger: AAAAGCTGGCCATTCTTCTCAAGGGTGGCCAGGCTC...ATGCCGTTGATATCCCAGCACTTGGGAGGCAGAGGCAGTCAGATCTCTTAAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
CDS-3UTR GCA 90 bp GTAGACCAAGCTGTCCTTGAGCTTAAGAGATCTGACTGCCTCTGCCTCCCAAGTGAGTCCAGATGGCATTaGAGGTGGAGCACTTGGGTT +
Preference number: 4 (lower is better)
Translates to: VDQAVLELKRSDCLCLPSESRWH*RWSTWV
Trigger: AACCCAAGTGCTCCACCTGCAATGCCATCTGGACTC...ACTTGGGAGGCAGAGGCAGTCAGATCTCTTAAGCTCAAGGACAGCTTGGTCTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
CDS-3UTR CCA 90 bp ACAGCGCTGCCTTACGCATTTCGCTCATTTTCCTTGTTTCCTCCCGTTGGACTCTCACAGCAGGCGGTTTaGCAGAGGACTGTTCAGGTA +
Preference number: 4 (lower is better)
Translates to: TALPYAFRSFSLFPPVGLSQQAV*QRTVQV
Trigger: TACCTGAACAGTCCTCTGCCAAACCGCCTGCTGTGA...GAGTCCAACGGGAGGAAACAAGGAAAATGAGCGAAATGCGTAAGGCAGCGCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
CDS-3UTR GCA 90 bp ACTGGCGGGGTGAGAAGGGAAGATGCAAGAAGCAGACTACACCAAAATGCCAAAGAGTCCAGATGGCATTaGAGGTGGAGCACTTGGGTT +
Preference number: 4 (lower is better)
Translates to: TGGVRREDARSRLHQNAKESRWH*RWSTWV
Trigger: AACCCAAGTGCTCCACCTGCAATGCCATCTGGACTC...TTTGGCATTTTGGTGTAGTCTGCTTCTTGCATCTTCCCTTCTCACCCCGCCAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
CDS-3UTR CCA 90 bp GAGAACCAGCAATCTTTGTGGAGTCCAAAAGAAGTTGTTACTTCAGCAAAGCCTGGTTACTCCACGGGCTaGAGCCTGGCCACCCTTGAG +
Preference number: 4 (lower is better)
Translates to: ENQQSLWSPKEVVTSAKPGYSTG*SLATLE
Trigger: CTCAAGGGTGGCCAGGCTCCAGCCCGTGGAGTAACC...AGGCTTTGCTGAAGTAACAACTTCTTTTGGACTCCACAAAGATTGCTGGTTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
CDS-3UTR CCA 90 bp AAGGCCAGCAATATTTTTGGGTCACCAGTTACTGCCCCCATAGCTCTGCATTCCCCCTGGAGATCGATATaGCATGTTAGGATGCTGCCC +
Preference number: 4 (lower is better)
Translates to: KASNIFGSPVTAPIALHSPWRSI*HVRMLP
Trigger: GGGCAGCATCCTAACATGCCATATCGATCTCCAGGG...GGAATGCAGAGCTATGGGGGCAGTAACTGGTGACCCAAAAATATTGCTGGCCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
CDS-3UTR CCA 90 bp AGCTTAAGAGATCTGACTGCCTCTGCCTCCCAAGTGCTGGGATATCAACGGCATAGGAACAGTGGGATATaGCCCTGGAGATCGATATGG +
Preference number: 4 (lower is better)
Translates to: SLRDLTASASQVLGYQRHRNSGI*PWRSIW
Trigger: CCATATCGATCTCCAGGGCCATATCCCACTGTTCCT...ATGCCGTTGATATCCCAGCACTTGGGAGGCAGAGGCAGTCAGATCTCTTAAGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
CDS-3UTR CCA 90 bp TTGTGGAGTCCAAAAGAAGTTGTTACTTCAGCAAAGCCTAATAGGATGGCATCCGATGGGGTGCTGGCGTaGGGTATGATCCTGCAGGGC +
Preference number: 4 (lower is better)
Translates to: LWSPKEVVTSAKPNRMASDGVLA*GMILQG
Trigger: GCCCTGCAGGATCATACCCCACGCCAGCACCCCATC...GGATGCCATCCTATTAGGCTTTGCTGAAGTAACAACTTCTTTTGGACTCCACAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
CDS-3UTR CCA 90 bp CCACCAAAATGTGCAAGGAAATATTTGCATACCATCCTCTGTCCAAACAACTGGGATGGGGTGCTGGCGTaGGGTATGATCCTGCAGGGC +
Preference number: 4 (lower is better)
Translates to: PPKCARKYLHTILCPNNWDGVLA*GMILQG
Trigger: GCCCTGCAGGATCATACCCCACGCCAGCACCCCATC...CCAGTTGTTTGGACAGAGGATGGTATGCAAATATTTCCTTGCACATTTTGGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000228058.2
CDS-3UTR CCA 90 bp GAAGCTCCCAGGGGAGAACCAGCAATCTTTGTGGAGTCCAAAAGAAGTTGTTACTTGTTCAGAGCAGGATaGGGTGCTGGCGTGGGGTAT +
Preference number: 4 (lower is better)
Translates to: EAPRGEPAIFVESKRSCYLFRAG*GAGVGY
Trigger: ATACCCCACGCCAGCACCCCATCCTGCTCTGAACAA...GTAACAACTTCTTTTGGACTCCACAAAGATTGCTGGTTCTCCCCTGGGAGCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
CDS-3UTR CCA 90 bp GAAGCTCCCAGGGGAGAACCAGCAATCTTTGTGGAGTCCAAAAGAAGTTGTTACTCACAGCAGGCGGTTTaGCAGAGGACTGTTCAGGTA +
Preference number: 4 (lower is better)
Translates to: EAPRGEPAIFVESKRSCYSQQAV*QRTVQV
Trigger: TACCTGAACAGTCCTCTGCCAAACCGCCTGCTGTGA...GTAACAACTTCTTTTGGACTCCACAAAGATTGCTGGTTCTCCCCTGGGAGCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
CDS-3UTR CCA 90 bp AGCTTAAGAGATCTGACTGCCTCTGCCTCCCAAGTGCTGGGATATCAACGGCATTGGCATAGGCATATTTaGCGTAGCATATGGCCCTGT +
Preference number: 4 (lower is better)
Translates to: SLRDLTASASQVLGYQRHWHRHI*RSIWPC
Trigger: ACAGGGCCATATGCTACGCCAAATATGCCTATGCCA...ATGCCGTTGATATCCCAGCACTTGGGAGGCAGAGGCAGTCAGATCTCTTAAGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
CDS-3UTR CCA 90 bp AGCTTAAGAGATCTGACTGCCTCTGCCTCCCAAGTGCTGGGATATCAACGGCATAGTGGGATATGGCCCTaGAGATCGATATGGCATGTT +
Preference number: 4 (lower is better)
Translates to: SLRDLTASASQVLGYQRHSGIWP*RSIWHV
Trigger: AACATGCCATATCGATCTCCAGGGCCATATCCCACT...ATGCCGTTGATATCCCAGCACTTGGGAGGCAGAGGCAGTCAGATCTCTTAAGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
CDS-3UTR CCA 90 bp ACAATCTGTCTTTTCAGTAGACCAGTCATGGCCTACACTGTTTGTTCTGAAAGCTGCAGGTGGAGCACTTaGGTTACTCCACGGGCTGGA +
Preference number: 4 (lower is better)
Translates to: TICLFSRPVMAYTVCSESCRWST*VTPRAG
Trigger: TCCAGCCCGTGGAGTAACCCAAGTGCTCCACCTGCA...GCTTTCAGAACAAACAGTGTAGGCCATGACTGGTCTACTGAAAAGACAGATTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
CDS-3UTR CCA 90 bp TGCAAGGAAATATTTGCATACCATCCTCTGTCCAAACAACTGGTCCCAAAGGAACTGTCCAGTGGACTCTaGGGAGCTCTCCTGGTCAGA +
Preference number: 4 (lower is better)
Translates to: CKEIFAYHPLSKQLVPKELSSGL*GALLVR
Trigger: TCTGACCAGGAGAGCTCCCCAGAGTCCACTGGACAG...TTCCTTTGGGACCAGTTGTTTGGACAGAGGATGGTATGCAAATATTTCCTTGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228058.2
CDS-3UTR CCA 90 bp GCTAAGTCCCACCAAAATGTGCAAGGAAATATTTGCATACCATCCTCTGTCCAAGCTTCGTCTGTCCAGTaGACTCTGGGGAGCTCTCCT +
Preference number: 4 (lower is better)
Translates to: AKSHQNVQGNICIPSSVQASSVQ*TLGSSP
Trigger: AGGAGAGCTCCCCAGAGTCCACTGGACAGACGAAGC...TTGGACAGAGGATGGTATGCAAATATTTCCTTGCACATTTTGGTGGGACTTAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000228058.2
CDS-3UTR TCA 90 bp CCAGTCATGGCCTACACTGTTTGTTCTGAAAGCAGGATTATTCTTGGGTTAAAAAACAGGCGGTGCTCCTaGCACTGGAGGAGGAACAGT +
Preference number: 4 (lower is better)
Translates to: PVMAYTVCSESRIILGLKNRRCS*HWRRNS
Trigger: ACTGTTCCTCCTCCAGTGTCAGGAGCACCGCCTGTT...TTTTAACCCAAGAATAATCCTGCTTTCAGAACAAACAGTGTAGGCCATGACTGG
48% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
CDS-3UTR CCA 90 bp ATGGCCTACACTGTTTGTTCTGAAAGCAGGATTATTCTTGGGTTAAAACAAAACGATGGGGTGCTGGCGTaGGGTATGATCCTGCAGGGC +
Preference number: 4 (lower is better)
Translates to: MAYTVCSESRIILGLKQNDGVLA*GMILQG
Trigger: GCCCTGCAGGATCATACCCCACGCCAGCACCCCATC...GTTTTGTTTTAACCCAAGAATAATCCTGCTTTCAGAACAAACAGTGTAGGCCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
CDS-3UTR CCA 90 bp CAAAATGTGCAAGGAAATATTTGCATACCATCCTCTGTCCAAACAACTGGTCCCTTGTTCAGAGCAGGATaGGGTGCTGGCGTGGGGTAT +
Preference number: 4 (lower is better)
Translates to: QNVQGNICIPSSVQTTGPLFRAG*GAGVGY
Trigger: ATACCCCACGCCAGCACCCCATCCTGCTCTGAACAA...GGGACCAGTTGTTTGGACAGAGGATGGTATGCAAATATTTCCTTGCACATTTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000228058.2
CDS-3UTR CCA 90 bp CCACCAAAATGTGCAAGGAAATATTTGCATACCATCCTCTGTCCAAACAACTGGACTGCATTCACTTTGTaGGGGCCACCAGGCATGGGT +
Preference number: 4 (lower is better)
Translates to: PPKCARKYLHTILCPNNWTAFTL*GPPGMG
Trigger: ACCCATGCCTGGTGGCCCCCACAAAGTGAATGCAGT...CCAGTTGTTTGGACAGAGGATGGTATGCAAATATTTCCTTGCACATTTTGGTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000228058.2
CDS-3UTR TCA 90 bp ATCTTCCATTGCTTACAGTATAAACATACATGTCTCAAACCACACTTCAGGCAGAACAGGCGGTGCTCCTaGCACTGGAGGAGGAACAGT +
Preference number: 4 (lower is better)
Translates to: IFHCLQYKHTCLKPHFRQNRRCS*HWRRNS
Trigger: ACTGTTCCTCCTCCAGTGTCAGGAGCACCGCCTGTT...CTGCCTGAAGTGTGGTTTGAGACATGTATGTTTATACTGTAAGCAATGGAAGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
CDS-3UTR CCA 90 bp CAAAATGTGCAAGGAAATATTTGCATACCATCCTCTGTCCAAACAACTGGTCCCGTCTCCCCAAGTTACTaGCTTCCTCTTCCTCTTGGG +
Preference number: 4 (lower is better)
Translates to: QNVQGNICIPSSVQTTGPVSPSY*LPLPLG
Trigger: CCCAAGAGGAAGAGGAAGCCAGTAACTTGGGGAGAC...GGGACCAGTTGTTTGGACAGAGGATGGTATGCAAATATTTCCTTGCACATTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000228058.2
CDS-3UTR CCA 90 bp TTACTTCAGCAAAGCCTAATAGGATGGCATCCAATAGAGAAACCAATGGAAGAATTGTTCAGAGCAGGATaGGGTGCTGGCGTGGGGTAT +
Preference number: 4 (lower is better)
Translates to: LLQQSLIGWHPIEKPMEELFRAG*GAGVGY
Trigger: ATACCCCACGCCAGCACCCCATCCTGCTCTGAACAA...TTCTTCCATTGGTTTCTCTATTGGATGCCATCCTATTAGGCTTTGCTGAAGTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
CDS-3UTR CCA 90 bp ACAATCTGTCTTTTCAGTAGACCAGTCATGGCCTACACTGTTTGTTCTGAAAGCTGGCATAGGCATATTTaGCGTAGCATATGGCCCTGT +
Preference number: 4 (lower is better)
Translates to: TICLFSRPVMAYTVCSESWHRHI*RSIWPC
Trigger: ACAGGGCCATATGCTACGCCAAATATGCCTATGCCA...GCTTTCAGAACAAACAGTGTAGGCCATGACTGGTCTACTGAAAAGACAGATTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
CDS-3UTR CCA 90 bp CCAGTCATGGCCTACACTGTTTGTTCTGAAAGCAGGATTATTCTTGGGTTAAAAAGGAACAGTGGGATATaGCCCTGGAGATCGATATGG +
Preference number: 4 (lower is better)
Translates to: PVMAYTVCSESRIILGLKRNSGI*PWRSIW
Trigger: CCATATCGATCTCCAGGGCCATATCCCACTGTTCCT...TTTTAACCCAAGAATAATCCTGCTTTCAGAACAAACAGTGTAGGCCATGACTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR CAA 72 bp GGGAGAACCAGCAATCTTTGTGGAGTCCAAAAGAAGTaGTTACTTCAGCAAAGCCTAATAGGATGGCATCCA +
Preference number: 4 (lower is better)
Translates to: GRTSNLCGVQKK*LLQQSLIGWHP
Trigger: TGGATGCCATCCTATTAGGCTTTGCTGAAGTAACAACTTCTTTTGGACTCCACAAAGATTGCTGGTTCTCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR CAA 72 bp ATATCCAAGAAGCTCCCAGGGGAGAACCAGCAATCTTaGTGGAGTCCAAAAGAAGTTGTTACTTCAGCAAAG +
Preference number: 4 (lower is better)
Translates to: ISKKLPGENQQS*WSPKEVVTSAK
Trigger: CTTTGCTGAAGTAACAACTTCTTTTGGACTCCACAAAGATTGCTGGTTCTCCCCTGGGAGCTTCTTGGATAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR CAA 72 bp AGGCCCGTGAAACTTGCAGTTTATAATCTTGGCATTTaGAGGAATACGTGGCACCAGTTGATAAGTGTAGGC +
Preference number: 4 (lower is better)
Translates to: RPVKLAVYNLGI*RNTWHQLISVG
Trigger: GCCTACACTTATCAACTGGTGCCACGTATTCCTCAAAATGCCAAGATTATAAACTGCAAGTTTCACGGGCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
CDS-3UTR TCA 90 bp CTACATTTATCTGATTGTACCCACGTGATGTTCTACATATTCAAACACATGAAGGAGCCTGGCCACCCTTaGGAAGAATGGCCAGCTTTT +
Preference number: 4 (lower is better)
Translates to: LHLSDCTHVMFYIFKHMKEPGHP*EEWPAF
Trigger: AAAAGCTGGCCATTCTTCTCAAGGGTGGCCAGGCTC...CTTCATGTGTTTGAATATGTAGAACATCACGTGGGTACAATCAGATAAATGTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
CDS-3UTR CCA 90 bp ATGGCCTACACTGTTTGTTCTGAAAGCAGGATTATTCTTGGGTTAAAACAAAACCCCTGGAGATCGATATaGCATGTTAGGATGCTGCCC +
Preference number: 4 (lower is better)
Translates to: MAYTVCSESRIILGLKQNPWRSI*HVRMLP
Trigger: GGGCAGCATCCTAACATGCCATATCGATCTCCAGGG...GTTTTGTTTTAACCCAAGAATAATCCTGCTTTCAGAACAAACAGTGTAGGCCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
CDS-3UTR CCA 90 bp CTACATTTATCTGATTGTACCCACGTGATGTTCTACATATTCAAACACATGAAGAGTGGGATATGGCCCTaGAGATCGATATGGCATGTT +
Preference number: 4 (lower is better)
Translates to: LHLSDCTHVMFYIFKHMKSGIWP*RSIWHV
Trigger: AACATGCCATATCGATCTCCAGGGCCATATCCCACT...CTTCATGTGTTTGAATATGTAGAACATCACGTGGGTACAATCAGATAAATGTAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
3UTR CAA 72 bp CCAGACAAACGGAAACAATCCTGCTACACTGTACACTaGAATAGTTGCACTGATAAACACTACAATCTTGGA +
Preference number: 4 (lower is better)
Translates to: PDKRKQSCYTVH*NSCTDKHYNLG
Trigger: TCCAAGATTGTAGTGTTTATCAGTGCAACTATTCAAGTGTACAGTGTAGCAGGATTGTTTCCGTTTGTCTGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
CDS TCA 90 bp GGTGGAGCACTTGGGTTACTCCACGGGCTGGAGCCTGGCCACCCTTaGGAAGAATGGCCAGCTTTTGTATTGGTCACAGCAGGCGGTTTG +
Preference number: 5 (lower is better)
Translates to: GGALGLLHGLEPGHP*EEWPAFVLVTAGGL
Trigger: CAAACCGCCTGCTGTGACCAATACAAAAGCTGGCCATTCTTCTCAAGGGTGGCCAGGCTCCAGCCCGTGGAGTAACCCAAGTGCTCCACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
ENSMUST00000227554.2
CDS CCA 90 bp GGGTTTGCCATCTACCTTCAGAAGCTTCGTCTGTCCAGTGGACTCTaGGGAGCTCTCCTGGTCAGAGTCATCAGAAAGGGAGCCACCTGG +
Preference number: 5 (lower is better)
Translates to: GFAIYLQKLRLSSGL*GALLVRVIRKGATW
Trigger: CCAGGTGGCTCCCTTTCTGATGACTCTGACCAGGAGAGCTCCCCAGAGTCCACTGGACAGACGAAGCTTCTGAAGGTAGATGGCAAACCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228058.2
CDS CCA 90 bp ACCTTCAGAAGCTTCGTCTGTCCAGTGGACTCTGGGGAGCTCTCCTaGTCAGAGTCATCAGAAAGGGAGCCACCTGGGACTGCATTCACT +
Preference number: 5 (lower is better)
Translates to: TFRSFVCPVDSGELS*SESSEREPPGTAFT
Trigger: AGTGAATGCAGTCCCAGGTGGCTCCCTTTCTGATGACTCTGACCAGGAGAGCTCCCCAGAGTCCACTGGACAGACGAAGCTTCTGAAGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228058.2
CDS-3UTR CAA 90 bp AGATGCAAGAAGCAGACTACACCAAAATGCCAAAGCCCACGCCTCCAGGGCACAGGAGCCTGGCCACCCTaGAGAAGAATGGCCAGCTTT +
Preference number: 5 (lower is better)
Translates to: RCKKQTTPKCQSPRLQGTGAWPP*RRMASF
Trigger: AAAGCTGGCCATTCTTCTCAAGGGTGGCCAGGCTCC...TGTGCCCTGGAGGCGTGGGCTTTGGCATTTTGGTGTAGTCTGCTTCTTGCATCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
CDS-3UTR CAA 90 bp AGCTTAAGAGATCTGACTGCCTCTGCCTCCCAAGTGCTGGGATATCAACGGCATTTGCAGGTGGAGCACTaGGGTTACTCCACGGGCTGG +
Preference number: 5 (lower is better)
Translates to: SLRDLTASASQVLGYQRHLQVEH*GYSTGW
Trigger: CCAGCCCGTGGAGTAACCCAAGTGCTCCACCTGCAA...ATGCCGTTGATATCCCAGCACTTGGGAGGCAGAGGCAGTCAGATCTCTTAAGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
CDS-3UTR CAA 90 bp GTAGACCAAGCTGTCCTTGAGCTTAAGAGATCTGACTGCCTCTGCCTCCCAAGTTTGCAGGTGGAGCACTaGGGTTACTCCACGGGCTGG +
Preference number: 5 (lower is better)
Translates to: VDQAVLELKRSDCLCLPSLQVEH*GYSTGW
Trigger: CCAGCCCGTGGAGTAACCCAAGTGCTCCACCTGCAA...ACTTGGGAGGCAGAGGCAGTCAGATCTCTTAAGCTCAAGGACAGCTTGGTCTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
CDS-3UTR CAA 90 bp CAAAATGTGCAAGGAAATATTTGCATACCATCCTCTGTCCAAACAACTGGTCCCGGCTTCCTCTTCCTCTaGGGACGTCTTTTCCTGAGG +
Preference number: 5 (lower is better)
Translates to: QNVQGNICIPSSVQTTGPGFLFL*GRLFLR
Trigger: CCTCAGGAAAAGACGTCCCAAGAGGAAGAGGAAGCC...GGGACCAGTTGTTTGGACAGAGGATGGTATGCAAATATTTCCTTGCACATTTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000228058.2
CDS-3UTR CAA 90 bp TTACTTCAGCAAAGCCTAATAGGATGGCATCCAATAGAGAAACCAATGGAAGAAGGAGCCTGGCCACCCTaGAGAAGAATGGCCAGCTTT +
Preference number: 5 (lower is better)
Translates to: LLQQSLIGWHPIEKPMEEGAWPP*RRMASF
Trigger: AAAGCTGGCCATTCTTCTCAAGGGTGGCCAGGCTCC...TTCTTCCATTGGTTTCTCTATTGGATGCCATCCTATTAGGCTTTGCTGAAGTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
CDS-3UTR CAA 90 bp CCAAAATGTGCAAGGAAATATTTGCATACCATCCTCTGTCCAAACAACTGGTCCAGTATTATATCCTTGTaGTTTCCCCAAGGTCTCTGC +
Preference number: 5 (lower is better)
Translates to: PKCARKYLHTILCPNNWSSIISL*FPQGLC
Trigger: GCAGAGACCTTGGGGAAACAACAAGGATATAATACT...GGACCAGTTGTTTGGACAGAGGATGGTATGCAAATATTTCCTTGCACATTTTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000228058.2
CDS-3UTR CAA 90 bp CCAAAATGTGCAAGGAAATATTTGCATACCATCCTCTGTCCAAACAACTGGTCCATTAGTATTATATCCTaGTTGTTTCCCCAAGGTCTC +
Preference number: 5 (lower is better)
Translates to: PKCARKYLHTILCPNNWSISIIS*LFPQGL
Trigger: GAGACCTTGGGGAAACAACAAGGATATAATACTAAT...GGACCAGTTGTTTGGACAGAGGATGGTATGCAAATATTTCCTTGCACATTTTGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000228058.2
CDS GCA 72 bp CTGGTCAGAGTCATCAGAAAGGGAGCCACCTGGGACTaGATTCACTTTGTGGGGGCCACCAGGCATGGGTGG +
Preference number: 6 (lower is better)
Translates to: LVRVIRKGATWD*IHFVGATRHGW
Trigger: CCACCCATGCCTGGTGGCCCCCACAAAGTGAATGCAGTCCCAGGTGGCTCCCTTTCTGATGACTCTGACCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000228058.2
CDS CCA 72 bp GCATTGCAGGTGGAGCACTTGGGTTACTCCACGGGCTaGAGCCTGGCCACCCTTGAGAAGAATGGCCAGCTT +
Preference number: 6 (lower is better)
Translates to: ALQVEHLGYSTG*SLATLEKNGQL
Trigger: AAGCTGGCCATTCTTCTCAAGGGTGGCCAGGCTCCAGCCCGTGGAGTAACCCAAGTGCTCCACCTGCAATGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
ENSMUST00000227554.2
CDS CCA 72 bp GCTCTCCTGGTCAGAGTCATCAGAAAGGGAGCCACCTaGGACTGCATTCACTTTGTGGGGGCCACCAGGCAT +
Preference number: 6 (lower is better)
Translates to: ALLVRVIRKGAT*DCIHFVGATRH
Trigger: ATGCCTGGTGGCCCCCACAAAGTGAATGCAGTCCCAGGTGGCTCCCTTTCTGATGACTCTGACCAGGAGAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000228058.2
CDS CAA 90 bp TCCACGGGCTGGAGCCTGGCCACCCTTGAGAAGAATGGCCAGCTTTaGTATTGGTCACAGCAGGCGGTTTGGCAGAGGACTGTTCAGGTA +
Preference number: 6 (lower is better)
Translates to: STGWSLATLEKNGQL*YWSQQAVWQRTVQV
Trigger: TACCTGAACAGTCCTCTGCCAAACCGCCTGCTGTGACCAATACAAAAGCTGGCCATTCTTCTCAAGGGTGGCCAGGCTCCAGCCCGTGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
ENSMUST00000227554.2
CDS CAA 90 bp AGGTGGAGCACTTGGGTTACTCCACGGGCTGGAGCCTGGCCACCCTaGAGAAGAATGGCCAGCTTTTGTATTGGTCACAGCAGGCGGTTT +
Preference number: 6 (lower is better)
Translates to: RWSTWVTPRAGAWPP*RRMASFCIGHSRRF
Trigger: AAACCGCCTGCTGTGACCAATACAAAAGCTGGCCATTCTTCTCAAGGGTGGCCAGGCTCCAGCCCGTGGAGTAACCCAAGTGCTCCACCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
ENSMUST00000227554.2
CDS TCA 72 bp CTTGGGTTACTCCACGGGCTGGAGCCTGGCCACCCTTaGGAAGAATGGCCAGCTTTTGTATTGGTCACAGCA +
Preference number: 6 (lower is better)
Translates to: LGLLHGLEPGHP*EEWPAFVLVTA
Trigger: TGCTGTGACCAATACAAAAGCTGGCCATTCTTCTCAAGGGTGGCCAGGCTCCAGCCCGTGGAGTAACCCAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
ENSMUST00000227554.2
CDS CCA 72 bp AGGTGGAGCACTTGGGTTACTCCACGGGCTGGAGCCTaGCCACCCTTGAGAAGAATGGCCAGCTTTTGTATT +
Preference number: 6 (lower is better)
Translates to: RWSTWVTPRAGA*PPLRRMASFCI
Trigger: AATACAAAAGCTGGCCATTCTTCTCAAGGGTGGCCAGGCTCCAGCCCGTGGAGTAACCCAAGTGCTCCACCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
ENSMUST00000227554.2
CDS CAA 72 bp ACTTGGGTTACTCCACGGGCTGGAGCCTGGCCACCCTaGAGAAGAATGGCCAGCTTTTGTATTGGTCACAGC +
Preference number: 6 (lower is better)
Translates to: TWVTPRAGAWPP*RRMASFCIGHS
Trigger: GCTGTGACCAATACAAAAGCTGGCCATTCTTCTCAAGGGTGGCCAGGCTCCAGCCCGTGGAGTAACCCAAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
ENSMUST00000227554.2
CDS CCA 72 bp CTGGCCACCCTTGAGAAGAATGGCCAGCTTTTGTATTaGTCACAGCAGGCGGTTTGGCAGAGGACTGTTCAG +
Preference number: 6 (lower is better)
Translates to: LATLEKNGQLLY*SQQAVWQRTVQ
Trigger: CTGAACAGTCCTCTGCCAAACCGCCTGCTGTGACCAATACAAAAGCTGGCCATTCTTCTCAAGGGTGGCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000164235.3
ENSMUST00000166743.9
ENSMUST00000227554.2
CDS CAA 90 bp GTTACTGGCTTCCTCTTCCTCTTGGGACGTCTTTTCCTGAGGGGTTaGCCATCTACCTTCAGAAGCTTCGTCTGTCCAGTGGACTCTGGG +
Preference number: 6 (lower is better)
Translates to: VTGFLFLLGRLFLRG*PSTFRSFVCPVDSG
Trigger: CCCAGAGTCCACTGGACAGACGAAGCTTCTGAAGGTAGATGGCAAACCCCTCAGGAAAAGACGTCCCAAGAGGAAGAGGAAGCCAGTAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000228058.2
CDS CCA 72 bp ATCTACCTTCAGAAGCTTCGTCTGTCCAGTGGACTCTaGGGAGCTCTCCTGGTCAGAGTCATCAGAAAGGGA +
Preference number: 6 (lower is better)
Translates to: IYLQKLRLSSGL*GALLVRVIRKG
Trigger: TCCCTTTCTGATGACTCTGACCAGGAGAGCTCCCCAGAGTCCACTGGACAGACGAAGCTTCTGAAGGTAGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228058.2
CDS TCA 72 bp TTACTGGCTTCCTCTTCCTCTTGGGACGTCTTTTCCTaGGGGGTTTGCCATCTACCTTCAGAAGCTTCGTCT +
Preference number: 6 (lower is better)
Translates to: LLASSSSWDVFS*GVCHLPSEASS
Trigger: AGACGAAGCTTCTGAAGGTAGATGGCAAACCCCTCAGGAAAAGACGTCCCAAGAGGAAGAGGAAGCCAGTAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000228058.2
CDS TCA 72 bp GTTTCCCCAAGGTCTCTGCTTGATAAGTTAAATTCTTaGTGTCTCCCCAAGTTACTGGCTTCCTCTTCCTCT +
Preference number: 6 (lower is better)
Translates to: VSPRSLLDKLNS*CLPKLLASSSS
Trigger: AGAGGAAGAGGAAGCCAGTAACTTGGGGAGACATCAAGAATTTAACTTATCAAGCAGAGACCTTGGGGAAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000228058.2