Pregenerated sensors for MAPK1IP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000041775Ensembl transcript IDs: ENSMUST00000075667.5, ENSMUST00000118810.2, ENSMUST00000119664.2
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TCAGGTGCTTCTTTTGTCCAGTGCTCTCCAAGGTGCTCTCCGGGTTaGACGAATCGGAAGGGGAGCCACCCGGGATTTCATTCATTCTAT | + |
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Preference number: 5 (lower is better) Translates to: SGASFVQCSPRCSPG*TNRKGSHPGFHSFY Trigger: ATAGAATGAATGAAATCCCGGGTGGCTCCCCTTCCGATTCGTCCAACCCGGAGAGCACCTTGGAGAGCACTGGACAAAAGAAGCACCTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000075667.5 ENSMUST00000118810.2 ENSMUST00000119664.2 |
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| CDS GCA 90 bp | TTCTTGGATCGTCTCCTCTTGATGGATTTGTTGTCTAGCTTCAGGTaGTTCTTTTGTCCAGTGCTCTCCAAGGTGCTCTCCGGGTTGGAC | + |
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Preference number: 5 (lower is better) Translates to: FLDRLLLMDLLSSFR*FFCPVLSKVLSGLD Trigger: GTCCAACCCGGAGAGCACCTTGGAGAGCACTGGACAAAAGAAGCACCTGAAGCTAGACAACAAATCCATCAAGAGGAGACGATCCAAGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000075667.5 ENSMUST00000118810.2 ENSMUST00000119664.2 |
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| CDS CCA 72 bp | CAGGGACTCGTACAGCAGGGCCTGGATATGGACCACTaGGTTGGGGACACGATGGTCCAGAAGGAAGAAAGG | + |
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Preference number: 6 (lower is better) Translates to: QGLVQQGLDMDH*VGDTMVQKEER Trigger: CCTTTCTTCCTTCTGGACCATCGTGTCCCCAACCCAGTGGTCCATATCCAGGCCCTGCTGTACGAGTCCCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000075667.5 ENSMUST00000118810.2 ENSMUST00000119664.2 |
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| CDS CAA 72 bp | GACTCGTACAGCAGGGCCTGGATATGGACCACTGGGTaGGGGACACGATGGTCCAGAAGGAAGAAAGGGTGC | + |
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Preference number: 6 (lower is better) Translates to: DSYSRAWIWTTG*GTRWSRRKKGC Trigger: GCACCCTTTCTTCCTTCTGGACCATCGTGTCCCCAACCCAGTGGTCCATATCCAGGCCCTGCTGTACGAGTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000075667.5 ENSMUST00000118810.2 ENSMUST00000119664.2 |
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| CDS CCA 72 bp | TCTTTTGTCCAGTGCTCTCCAAGGTGCTCTCCGGGTTaGACGAATCGGAAGGGGAGCCACCCGGGATTTCAT | + |
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Preference number: 6 (lower is better) Translates to: SFVQCSPRCSPG*TNRKGSHPGFH Trigger: ATGAAATCCCGGGTGGCTCCCCTTCCGATTCGTCCAACCCGGAGAGCACCTTGGAGAGCACTGGACAAAAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000075667.5 ENSMUST00000118810.2 ENSMUST00000119664.2 |
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| CDS CAA 72 bp | TTCTTTTGTCCAGTGCTCTCCAAGGTGCTCTCCGGGTaGGACGAATCGGAAGGGGAGCCACCCGGGATTTCA | + |
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Preference number: 6 (lower is better) Translates to: FFCPVLSKVLSG*DESEGEPPGIS Trigger: TGAAATCCCGGGTGGCTCCCCTTCCGATTCGTCCAACCCGGAGAGCACCTTGGAGAGCACTGGACAAAAGAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000075667.5 ENSMUST00000118810.2 ENSMUST00000119664.2 |
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| CDS TCA 72 bp | ATTATTCGGGGAAGGCTGGAGTCCTGGGCTGGGATATaGCGCTTCAGGAGTAGGATACTGCGCTGGTGGTTC | + |
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Preference number: 6 (lower is better) Translates to: IIRGRLESWAGI*RFRSRILRWWF Trigger: GAACCACCAGCGCAGTATCCTACTCCTGAAGCGTCATATCCCAGCCCAGGACTCCAGCCTTCCCCGAATAAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000075667.5 ENSMUST00000118810.2 ENSMUST00000119664.2 |
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| CDS TCA 72 bp | GATTTCATTCATTCTATGGAGGCTACCAGGCCCTGGTaGAGCAGCAGAAGGTCCTGGCGGCAGTGGGTAAGG | + |
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Preference number: 6 (lower is better) Translates to: DFIHSMEATRPW*SSRRSWRQWVR Trigger: CCTTACCCACTGCCGCCAGGACCTTCTGCTGCTTCACCAGGGCCTGGTAGCCTCCATAGAATGAATGAAATC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000075667.5 ENSMUST00000118810.2 ENSMUST00000119664.2 |
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| CDS CAA 90 bp | TTCAGGTGCTTCTTTTGTCCAGTGCTCTCCAAGGTGCTCTCCGGGTaGGACGAATCGGAAGGGGAGCCACCCGGGATTTCATTCATTCTA | + |
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Preference number: 6 (lower is better) Translates to: FRCFFCPVLSKVLSG*DESEGEPPGISFIL Trigger: TAGAATGAATGAAATCCCGGGTGGCTCCCCTTCCGATTCGTCCAACCCGGAGAGCACCTTGGAGAGCACTGGACAAAAGAAGCACCTGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000075667.5 ENSMUST00000118810.2 ENSMUST00000119664.2 |
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| CDS GCA 72 bp | CGTCTCCTCTTGATGGATTTGTTGTCTAGCTTCAGGTaGTTCTTTTGTCCAGTGCTCTCCAAGGTGCTCTCC | + |
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Preference number: 6 (lower is better) Translates to: RLLLMDLLSSFR*FFCPVLSKVLS Trigger: GGAGAGCACCTTGGAGAGCACTGGACAAAAGAAGCACCTGAAGCTAGACAACAAATCCATCAAGAGGAGACG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000075667.5 ENSMUST00000118810.2 ENSMUST00000119664.2 |
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