RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MAP7D1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000028849

Ensembl transcript IDs: ENSMUST00000061143.15, ENSMUST00000106132.3, ENSMUST00000122129.8, ENSMUST00000125981.8

Found 445 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GCAACCAGTATTGTGTGGCCCGAGGTGCCCCTCCATTCCCAGACCTaGGTTCCCCCTCGGTTACAGTTAAATAGAGGAAGATCTGCCCAG +
Preference number: 1 (lower is better)
Translates to: ATSIVWPEVPLHSQT*VPPRLQLNRGRSAQ
Trigger: CTGGGCAGATCTTCCTCTATTTAACTGTAACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCACCTCGGGCCACACAATACTGGTTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
3UTR-3UTR GCA 90 bp AGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCGAGGTGCCCAGGAACCTTCACAGCTaGACCTCGGTCCAAGGCAAT +
Preference number: 2 (lower is better)
Translates to: RTGGITPEATSIVWPEVPRNLHS*TSVQGN
Trigger: ATTGCCTTGGACCGAGGTGCAGCTGTGAAGGTTCCT...GGGCACCTCGGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
3UTR-3UTR GCA 90 bp TCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCGAGGAACCTTCACAGCTaGACCTCGGTCCAAGGCAAT +
Preference number: 2 (lower is better)
Translates to: SRRGQGASPLKQPVLCGPRNLHS*TSVQGN
Trigger: ATTGCCTTGGACCGAGGTGCAGCTGTGAAGGTTCCT...CGGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
3UTR-3UTR GCA 90 bp TTCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCAGGAACCTTCACAGCTaGACCTCGGTCCAAGGCAAT +
Preference number: 2 (lower is better)
Translates to: FQARTGGITPEATSIVWPRNLHS*TSVQGN
Trigger: ATTGCCTTGGACCGAGGTGCAGCTGTGAAGGTTCCT...GGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
3UTR-3UTR CCA 90 bp AGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCGAGGTGTGTGTGTTGTGTATaGGGAAGATGGGTGTCCGAG +
Preference number: 2 (lower is better)
Translates to: RRGQGASPLKQPVLCGPRCVCCV*GRWVSE
Trigger: CTCGGACACCCATCTTCCCCATACACAACACACACA...CCTCGGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
3UTR-3UTR TCA 90 bp GTGCCCCTCCATTCCCAGACCTGGGTTCCCCCTCGGTTACAGTTAAATAGAGGAAGCACACGGATGTACTaGGGGGCAGTCCTGCTTTCA +
Preference number: 2 (lower is better)
Translates to: VPLHSQTWVPPRLQLNRGSTRMY*GAVLLS
Trigger: TGAAAGCAGGACTGCCCCTCAGTACATCCGTGTGCT...TCCTCTATTTAACTGTAACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
3UTR-3UTR CCA 90 bp TTGATCAGATGTAATAACACTGATTCCAGGCGAGGACAGGGGGCATCACCCCTGGCAACCAGTATTGTGTaGCCCGAGGTGCCCCTCCAT +
Preference number: 2 (lower is better)
Translates to: LIRCNNTDSRRGQGASPLATSIV*PEVPLH
Trigger: ATGGAGGGGCACCTCGGGCCACACAATACTGGTTGC...CAGGGGTGATGCCCCCTGTCCTCGCCTGGAATCAGTGTTATTACATCTGATCAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
3UTR-3UTR TCA 90 bp TTGATCAGATGTAATAACACTGATTCCAGGCGAGGACAGGGGGCATCACCCCTGAGCACACGGATGTACTaGGGGGCAGTCCTGCTTTCA +
Preference number: 2 (lower is better)
Translates to: LIRCNNTDSRRGQGASPLSTRMY*GAVLLS
Trigger: TGAAAGCAGGACTGCCCCTCAGTACATCCGTGTGCT...CAGGGGTGATGCCCCCTGTCCTCGCCTGGAATCAGTGTTATTACATCTGATCAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
3UTR-3UTR CCA 90 bp GTGCCCCTCCATTCCCAGACCTGGGTTCCCCCTCGGTTACAGTTAAATAGAGGATGTGTGTGTTGTGTATaGGGAAGATGGGTGTCCGAG +
Preference number: 2 (lower is better)
Translates to: VPLHSQTWVPPRLQLNRGCVCCV*GRWVSE
Trigger: CTCGGACACCCATCTTCCCCATACACAACACACACA...TCCTCTATTTAACTGTAACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
3UTR-3UTR CCA 90 bp TGTAATAACACTGATTCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCATGTGTGTGTTGTGTATaGGGAAGATGGGTGTCCGAG +
Preference number: 2 (lower is better)
Translates to: CNNTDSRRGQGASPLKQPCVCCV*GRWVSE
Trigger: CTCGGACACCCATCTTCCCCATACACAACACACACA...TGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGAATCAGTGTTATTACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
3UTR-3UTR CCA 90 bp AGATGTAATAACACTGATTCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAAGGCAAATACTACAAGTaGTCCTTCCCCAGGGGGAAG +
Preference number: 2 (lower is better)
Translates to: RCNNTDSRRGQGASPLKQGKYYK*SFPRGK
Trigger: CTTCCCCCTGGGGAAGGACCACTTGTAGTATTTGCC...TTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGAATCAGTGTTATTACATCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
3UTR-3UTR GCA 90 bp TGTAATAACACTGATTCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCACACCAGTCTGTAAGGTaGGGATTAAAAACAAAGAGG +
Preference number: 2 (lower is better)
Translates to: CNNTDSRRGQGASPLKQPHQSVR*GLKTKR
Trigger: CCTCTTTGTTTTTAATCCGCACCTTACAGACTGGTG...TGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGAATCAGTGTTATTACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
3UTR-3UTR GCA 90 bp AGATGTAATAACACTGATTCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAACACCAGTCTGTAAGGTaGGGATTAAAAACAAAGAGG +
Preference number: 2 (lower is better)
Translates to: RCNNTDSRRGQGASPLKQHQSVR*GLKTKR
Trigger: CCTCTTTGTTTTTAATCCGCACCTTACAGACTGGTG...TTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGAATCAGTGTTATTACATCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
3UTR GCA 72 bp TCACCCCTGAAGCAACCAGTATTGTGTGGCCCGAGGTaGCCCTCCATTCCCAGACCTGGGTTCCCCCTCGGT +
Preference number: 3 (lower is better)
Translates to: SPLKQPVLCGPR*PSIPRPGFPLG
Trigger: ACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCACCTCGGGCCACACAATACTGGTTGCTTCAGGGGTGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
3UTR-3UTR CAA 90 bp TTCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCGAGTGTGTGTGTGTGTaGTGTATGGGGAAGATGGGT +
Preference number: 3 (lower is better)
Translates to: FQARTGGITPEATSIVWPECVCV*CMGKMG
Trigger: ACCCATCTTCCCCATACACAACACACACACACACTC...GGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
3UTR CCA 72 bp CTGTCTCTTTCTCTTCCAGACACCCACGAGCTGATATaGAGGAACCTTCACAGCTGCACCTCGGTCCAAGGC +
Preference number: 3 (lower is better)
Translates to: LSLSLPDTHELI*RNLHSCTSVQG
Trigger: GCCTTGGACCGAGGTGCAGCTGTGAAGGTTCCTCCATATCAGCTCGTGGGTGTCTGGAAGAGAAAGAGACAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
3UTR CCA 72 bp ATTGTGTGGCCCGAGGTGCCCCTCCATTCCCAGACCTaGGTTCCCCCTCGGTTACAGTTAAATAGAGGAAGA +
Preference number: 3 (lower is better)
Translates to: IVWPEVPLHSQT*VPPRLQLNRGR
Trigger: TCTTCCTCTATTTAACTGTAACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCACCTCGGGCCACACAAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
3UTR-3UTR CAA 90 bp TGTAATAACACTGATTCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCAGAGTGTGTGTGTGTGTaGTGTATGGGGAAGATGGGT +
Preference number: 3 (lower is better)
Translates to: CNNTDSRRGQGASPLKQPECVCV*CMGKMG
Trigger: ACCCATCTTCCCCATACACAACACACACACACACTC...TGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGAATCAGTGTTATTACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
3UTR-3UTR CAA 90 bp TTGATCAGATGTAATAACACTGATTCCAGGCGAGGACAGGGGGCATCACCCCTGGAGTGTGTGTGTGTGTaGTGTATGGGGAAGATGGGT +
Preference number: 3 (lower is better)
Translates to: LIRCNNTDSRRGQGASPLECVCV*CMGKMG
Trigger: ACCCATCTTCCCCATACACAACACACACACACACTC...CAGGGGTGATGCCCCCTGTCCTCGCCTGGAATCAGTGTTATTACATCTGATCAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
3UTR-3UTR CAA 90 bp TTTACAGTATTCACATCCACTGTACCCCAGCAAACCAAGGCAAATACTACAAGTGAGTGTGTGTGTGTGTaGTGTATGGGGAAGATGGGT +
Preference number: 3 (lower is better)
Translates to: FTVFTSTVPQQTKANTTSECVCV*CMGKMG
Trigger: ACCCATCTTCCCCATACACAACACACACACACACTC...ACTTGTAGTATTTGCCTTGGTTTGCTGGGGTACAGTGGATGTGAATACTGTAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
3UTR TCA 72 bp TGGCAGAATTTTTCTCCCTTTATTTCCGGAGAAGTTTaGTCAGATGTAATAACACTGATTCCAGGCGAGGAC +
Preference number: 3 (lower is better)
Translates to: WQNFSPFISGEV*SDVITLIPGED
Trigger: GTCCTCGCCTGGAATCAGTGTTATTACATCTGATCAAACTTCTCCGGAAATAAAGGGAGAAAAATTCTGCCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp AGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCGAGGTGCCCGTCTCCCAGGGCCGCTaGCCCTACCCTGGTCCCTGC +
Preference number: 4 (lower is better)
Translates to: RTGGITPEATSIVWPEVPVSQGR*PYPGPC
Trigger: GCAGGGACCAGGGTAGGGGCAGCGGCCCTGGGAGAC...GGGCACCTCGGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp TTCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCCGAGCGCGGGCACACTaGCACGGCCTGGTCCCTGCC +
Preference number: 4 (lower is better)
Translates to: FQARTGGITPEATSIVWPRARAH*HGLVPA
Trigger: GGCAGGGACCAGGCCGTGCCAGTGTGCCCGCGCTCG...GGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGAA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR TCA 90 bp TTCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCCGTTGCGGGGCAGTGTaGCCGCGCTGCGACTCCGAG +
Preference number: 4 (lower is better)
Translates to: FQARTGGITPEATSIVWPRCGAV*PRCDSE
Trigger: CTCGGAGTCGCAGCGCGGTCACACTGCCCCGCAACG...GGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGAA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR TCA 90 bp AGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCGAGGTGCCCAACCCGCCCCTTGGGTaGTGCAGTGGTGCCTCGGGG +
Preference number: 4 (lower is better)
Translates to: RTGGITPEATSIVWPEVPNPPLG*CSGASG
Trigger: CCCCGAGGCACCACTGCATCACCCAAGGGGCGGGTT...GGGCACCTCGGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp GTATTGTGTGGCCCGAGGTGCCCCTCCATTCCCAGACCTGGGTTCCCCCTCGGTTGGCCGCCAGGTACTTaGCCCGCTCTTCTCGGCGCT +
Preference number: 4 (lower is better)
Translates to: VLCGPRCPSIPRPGFPLGWPPGT*PALLGA
Trigger: AGCGCCGAGAAGAGCGGGCCAAGTACCTGGCGGCCA...ACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCACCTCGGGCCACACAATAC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CCA 90 bp TCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCGCGAGCGCGGGCACACTaGCACGGCTGCAGAGGGATG +
Preference number: 4 (lower is better)
Translates to: SRRGQGASPLKQPVLCGPRARAH*HGCRGM
Trigger: CATCCCTCTGCAGCCGTGCCAGTGTGCCCGCGCTCG...CGGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp TGGCCCGAGGTGCCCCTCCATTCCCAGACCTGGGTTCCCCCTCGGTTACAGTTACGAGCGCGGGCACACTaGCACGGCTGCAGAGGGATG +
Preference number: 4 (lower is better)
Translates to: WPEVPLHSQTWVPPRLQLRARAH*HGCRGM
Trigger: CATCCCTCTGCAGCCGTGCCAGTGTGCCCGCGCTCG...TAACTGTAACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCACCTCGGGCCA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000125981.8
CDS-3UTR TCA 90 bp TCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCGGCGACTGGCGCTTCTTaGGGTTCCGTTCGCGGGCCA +
Preference number: 4 (lower is better)
Translates to: SRRGQGASPLKQPVLCGPATGAS*GSVRGP
Trigger: TGGCCCGCGAACGGAACCTCAAGAAGCGCCAGTCGC...CGGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR TCA 90 bp AGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCGAGGGCGACTGGCGCTTCTTaGGGTTCCGTTCGCGGGCCA +
Preference number: 4 (lower is better)
Translates to: RRGQGASPLKQPVLCGPRATGAS*GSVRGP
Trigger: TGGCCCGCGAACGGAACCTCAAGAAGCGCCAGTCGC...CCTCGGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp GTATTGTGTGGCCCGAGGTGCCCCTCCATTCCCAGACCTGGGTTCCCCCTCGGTCAGGACCAGCGCTGTTaGCGGATCTCAGCCCACGTC +
Preference number: 4 (lower is better)
Translates to: VLCGPRCPSIPRPGFPLGQDQRC*RISAHV
Trigger: GACGTGGGCTGAGATCCGGCAACAGCGCTGGTCCTG...ACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCACCTCGGGCCACACAATAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp GTATTGTGTGGCCCGAGGTGCCCCTCCATTCCCAGACCTGGGTTCCCCCTCGGTGCACACTGGCACGGCTaGAGAGGGATGAGTGCGGTC +
Preference number: 4 (lower is better)
Translates to: VLCGPRCPSIPRPGFPLGAHWHG*RGMSAV
Trigger: GACCGCACTCATCCCTCTGCAGCCGTGCCAGTGTGC...ACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCACCTCGGGCCACACAATAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp TGGCCCGAGGTGCCCCTCCATTCCCAGACCTGGGTTCCCCCTCGGTTACAGTTAGCCTCCCGGGCCAGCTaGTCCTCTCGCATTCGCTTG +
Preference number: 4 (lower is better)
Translates to: WPEVPLHSQTWVPPRLQLASRAS*SSRIRL
Trigger: CAAGCGAATGCGAGAGGAGCAGCTGGCCCGGGAGGC...TAACTGTAACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCACCTCGGGCCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp GTATTGTGTGGCCCGAGGTGCCCCTCCATTCCCAGACCTGGGTTCCCCCTCGGTTCCCATGCGCTCAGCTaGAGGCTGCGATGTCCAGGG +
Preference number: 4 (lower is better)
Translates to: VLCGPRCPSIPRPGFPLGSHALS*RLRCPG
Trigger: CCCTGGACATCGCAGCCTGCAGCTGAGCGCATGGGA...ACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCACCTCGGGCCACACAATAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000106132.3
CDS-3UTR CCA 90 bp GTATTGTGTGGCCCGAGGTGCCCCTCCATTCCCAGACCTGGGTTCCCCCTCGGTCAGAGGCTGGCACTGTaGTGGGGGATGGTTGGCTGC +
Preference number: 4 (lower is better)
Translates to: VLCGPRCPSIPRPGFPLGQRLAL*WGMVGC
Trigger: GCAGCCAACCATCCCCCACCACAGTGCCAGCCTCTG...ACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCACCTCGGGCCACACAATAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CCA 90 bp TCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCGTGGCCGCCAGGTACTTaGCCCGCTCTTCTCGGCGCT +
Preference number: 4 (lower is better)
Translates to: SRRGQGASPLKQPVLCGPWPPGT*PALLGA
Trigger: AGCGCCGAGAAGAGCGGGCCAAGTACCTGGCGGCCA...CGGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CCA 90 bp GTATTGTGTGGCCCGAGGTGCCCCTCCATTCCCAGACCTGGGTTCCCCCTCGGTTCCGAACCCGCCCCTTaGGTGATGCAGTGGTGCCTC +
Preference number: 4 (lower is better)
Translates to: VLCGPRCPSIPRPGFPLGSEPAP*VMQWCL
Trigger: GAGGCACCACTGCATCACCCAAGGGGCGGGTTCGGA...ACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCACCTCGGGCCACACAATAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp TTCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCTGTCCAGGGGAGCTGTaGTGCAGGGCCCCTGCCCAG +
Preference number: 4 (lower is better)
Translates to: FQARTGGITPEATSIVWPCPGEL*CRAPAQ
Trigger: CTGGGCAGGGGCCCTGCACCACAGCTCCCCTGGACA...GGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGAA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000106132.3
CDS-3UTR GCA 90 bp TGGCCCGAGGTGCCCCTCCATTCCCAGACCTGGGTTCCCCCTCGGTTACAGTTACGGCGCTCCTGGAGTTaGTTTTCCCGGAGCGCCTTG +
Preference number: 4 (lower is better)
Translates to: WPEVPLHSQTWVPPRLQLRRSWS*FSRSAL
Trigger: CAAGGCGCTCCGGGAAAAGCAACTCCAGGAGCGCCG...TAACTGTAACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCACCTCGGGCCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR GCA 90 bp AGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCGAGGTGCCCCGGCGCTCCTGGAGTTaGTTTTCCCGGAGCGCCTTG +
Preference number: 4 (lower is better)
Translates to: RTGGITPEATSIVWPEVPRRSWS*FSRSAL
Trigger: CAAGGCGCTCCGGGAAAAGCAACTCCAGGAGCGCCG...GGGCACCTCGGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR GCA 90 bp TGGCCCGAGGTGCCCCTCCATTCCCAGACCTGGGTTCCCCCTCGGTTACAGTTACAGGACCAGCGCTGTTaGCGGATCTCAGCCCACGTC +
Preference number: 4 (lower is better)
Translates to: WPEVPLHSQTWVPPRLQLQDQRC*RISAHV
Trigger: GACGTGGGCTGAGATCCGGCAACAGCGCTGGTCCTG...TAACTGTAACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCACCTCGGGCCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp TGGCCCGAGGTGCCCCTCCATTCCCAGACCTGGGTTCCCCCTCGGTTACAGTTAGAGAAGCCGTTCTCCTaGTGCGCTGGGAGAGGCTGC +
Preference number: 4 (lower is better)
Translates to: WPEVPLHSQTWVPPRLQLEKPFS*CAGRGC
Trigger: GCAGCCTCTCCCAGCGCACCAGGAGAACGGCTTCTC...TAACTGTAACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCACCTCGGGCCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR TCA 90 bp TGGCCCGAGGTGCCCCTCCATTCCCAGACCTGGGTTCCCCCTCGGTTACAGTTAGGGAGCTGGCTGAGGTaGGATCTGCCCTGTGGGATT +
Preference number: 4 (lower is better)
Translates to: WPEVPLHSQTWVPPRLQLGSWLR*DLPCGI
Trigger: AATCCCACAGGGCAGATCTCACCTCAGCCAGCTCCC...TAACTGTAACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCACCTCGGGCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR TCA 90 bp GTGCCCCTCCATTCCCAGACCTGGGTTCCCCCTCGGTTACAGTTAAATAGAGGACGTTGCGGGGCAGTGTaGCCGCGCTGCGACTCCGAG +
Preference number: 4 (lower is better)
Translates to: VPLHSQTWVPPRLQLNRGRCGAV*PRCDSE
Trigger: CTCGGAGTCGCAGCGCGGTCACACTGCCCCGCAACG...TCCTCTATTTAACTGTAACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp ATCACCCCTGAAGCAACCAGTATTGTGTGGCCCGAGGTGCCCCTCCATTCCCAGTCGGCTTTAAGCCGCTaGTCCTCCAGCCGTCGGCGG +
Preference number: 4 (lower is better)
Translates to: ITPEATSIVWPEVPLHSQSALSR*SSSRRR
Trigger: CCGCCGACGGCTGGAGGAGCAGCGGCTTAAAGCCGA...CTGGGAATGGAGGGGCACCTCGGGCCACACAATACTGGTTGCTTCAGGGGTGAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR GCA 90 bp GTGCCCCTCCATTCCCAGACCTGGGTTCCCCCTCGGTTACAGTTAAATAGAGGACCAGGGGAGCTGTGGTaGAGGGCCCCTGCCCAGGAC +
Preference number: 4 (lower is better)
Translates to: VPLHSQTWVPPRLQLNRGPGELW*RAPAQD
Trigger: GTCCTGGGCAGGGGCCCTGCACCACAGCTCCCCTGG...TCCTCTATTTAACTGTAACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp AGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCGAGGTGCCCTTCTGCAGTCGCTCCTaGTCCTCCTGCTCAGCCTGC +
Preference number: 4 (lower is better)
Translates to: RTGGITPEATSIVWPEVPFCSRS*SSCSAC
Trigger: GCAGGCTGAGCAGGAGGAGCAGGAGCGACTGCAGAA...GGGCACCTCGGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp AGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCGAGGTGCGCTGGGAGAGGCTaGAGGCCATTTACCAGGGAC +
Preference number: 4 (lower is better)
Translates to: RRGQGASPLKQPVLCGPRCAGRG*RPFTRD
Trigger: GTCCCTGGTAAATGGCCTGCAGCCTCTCCCAGCGCA...CCTCGGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp AGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCGAGGTGGGGCCCCTGCTCTTaGCTTCTGAGGACGGGCATT +
Preference number: 4 (lower is better)
Translates to: RRGQGASPLKQPVLCGPRWGPCS*LLRTGI
Trigger: AATGCCCGTCCTCAGAAGCCAAGAGCAGGGGCCCCA...CCTCGGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CCA 90 bp TGGCCCGAGGTGCCCCTCCATTCCCAGACCTGGGTTCCCCCTCGGTTACAGTTAAGCACCTGCTCCCACTaGTCTTACGTCCAGGGGAGC +
Preference number: 4 (lower is better)
Translates to: WPEVPLHSQTWVPPRLQLSTCSH*SYVQGS
Trigger: GCTCCCCTGGACGTAAGACCAGTGGGAGCAGGTGCT...TAACTGTAACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCACCTCGGGCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000122129.8
CDS-3UTR CCA 90 bp GTATTGTGTGGCCCGAGGTGCCCCTCCATTCCCAGACCTGGGTTCCCCCTCGGTCCAGGAAGGAGAGGGTaGGCGTCATCAGACGATCCA +
Preference number: 4 (lower is better)
Translates to: VLCGPRCPSIPRPGFPLGPGRRG*ASSDDP
Trigger: TGGATCGTCTGATGACGCCCACCCTCTCCTTCCTGG...ACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCACCTCGGGCCACACAATAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp CGAGCGTGTAAGCACACGGATGTACTGAGGGGCAGTCCTGCTTTCAGCCAAAGACTTCTGAGGCTGGGCTaGGGTGGGCGAGGGCACCGG +
Preference number: 4 (lower is better)
Translates to: RACKHTDVLRGSPAFSQRLLRLG*GGRGHR
Trigger: CCGGTGCCCTCGCCCACCCCAGCCCAGCCTCAGAAG...TCTTTGGCTGAAAGCAGGACTGCCCCTCAGTACATCCGTGTGCTTACACGCTCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp AGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCGAGGTGCCCGTTCTCCTGGTGCGCTaGGAGAGGCTGCAGGCCATT +
Preference number: 4 (lower is better)
Translates to: RTGGITPEATSIVWPEVPVLLVR*ERLQAI
Trigger: AATGGCCTGCAGCCTCTCCCAGCGCACCAGGAGAAC...GGGCACCTCGGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp AGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCGAGGCCCAGCGGTTCCCTTTaGGGAGAAGCCGTTCTCCTG +
Preference number: 4 (lower is better)
Translates to: RRGQGASPLKQPVLCGPRPSGSL*GEAVLL
Trigger: CAGGAGAACGGCTTCTCCCCAAAGGGAACCGCTGGG...CCTCGGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR TCA 90 bp TGTAATAACACTGATTCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCACGTTGCGGGGCAGTGTaGCCGCGCTGCGACTCCGAG +
Preference number: 4 (lower is better)
Translates to: CNNTDSRRGQGASPLKQPRCGAV*PRCDSE
Trigger: CTCGGAGTCGCAGCGCGGTCACACTGCCCCGCAACG...TGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGAATCAGTGTTATTACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR TCA 90 bp ACTGAGGGGCAGTCCTGCTTTCAGCCAAAGACATCACCAGTCTGTAAGGTGCGGACGGCTGCAGAGGGATaGGTGCGGTCGGGGTGTGGC +
Preference number: 4 (lower is better)
Translates to: TEGQSCFQPKTSPVCKVRTAAEG*VRSGCG
Trigger: GCCACACCCCGACCGCACTCATCCCTCTGCAGCCGT...CCGCACCTTACAGACTGGTGATGTCTTTGGCTGAAAGCAGGACTGCCCCTCAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp CTTCCCCAGGGGGAAGACCAGAGAGGCTATGAGTGTGTGTGTGTGTTGTGTATGCCAGGGGAGCTGTGGTaGAGGGCCCCTGCCCAGGAC +
Preference number: 4 (lower is better)
Translates to: LPQGEDQRGYECVCVLCMPGELW*RAPAQD
Trigger: GTCCTGGGCAGGGGCCCTGCACCACAGCTCCCCTGG...CATACACAACACACACACACACTCATAGCCTCTCTGGTCTTCCCCCTGGGGAAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp TTCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCCCGACACGGAGCACCTaGTCCCACTGGTCTTACGTC +
Preference number: 4 (lower is better)
Translates to: FQARTGGITPEATSIVWPPTRST*SHWSYV
Trigger: GACGTAAGACCAGTGGGAGCAGGTGCTCCGTGTCGG...GGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000122129.8
CDS-3UTR GCA 90 bp GTATTGTGTGGCCCGAGGTGCCCCTCCATTCCCAGACCTGGGTTCCCCCTCGGTTTTGGGCAGGTTTACTaGCGACACGGAGCACCTGCT +
Preference number: 4 (lower is better)
Translates to: VLCGPRCPSIPRPGFPLGFGQVY*RHGAPA
Trigger: AGCAGGTGCTCCGTGTCGGCAGTAAACCTGCCCAAA...ACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCACCTCGGGCCACACAATAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000122129.8
CDS-3UTR GCA 90 bp CGAGCGTGTAAGCACACGGATGTACTGAGGGGCAGTCCTGCTTTCAGCCAAAGACTGCAGAGGGATGAGTaGGGTCGGGGTGTGGCCCGG +
Preference number: 4 (lower is better)
Translates to: RACKHTDVLRGSPAFSQRLQRDE*GRGVAR
Trigger: CCGGGCCACACCCCGACCGCACTCATCCCTCTGCAG...TCTTTGGCTGAAAGCAGGACTGCCCCTCAGTACATCCGTGTGCTTACACGCTCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp TGGCCCGAGGTGCCCCTCCATTCCCAGACCTGGGTTCCCCCTCGGTTACAGTTAGCTGGGGCTCTCTTTTaGCTCCTCCTTCCTCCGAAC +
Preference number: 4 (lower is better)
Translates to: WPEVPLHSQTWVPPRLQLAGALF*LLLPPN
Trigger: GTTCGGAGGAAGGAGGAGGCAAAAGAGAGCCCCAGC...TAACTGTAACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCACCTCGGGCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp AGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCGAGGTGCCCGCTGGGGCTCTCTTTTaGCTCCTCCTTCCTCCGAAC +
Preference number: 4 (lower is better)
Translates to: RTGGITPEATSIVWPEVPAGALF*LLLPPN
Trigger: GTTCGGAGGAAGGAGGAGGCAAAAGAGAGCCCCAGC...GGGCACCTCGGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp AGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCGAGGTGCCCACCCTGGCATCTCCTTaGTTGGCAGGCTCCACTGTG +
Preference number: 4 (lower is better)
Translates to: RTGGITPEATSIVWPEVPTLASP*LAGSTV
Trigger: CACAGTGGAGCCTGCCAAGCAAGGAGATGCCAGGGT...GGGCACCTCGGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp ATCACCCCTGAAGCAACCAGTATTGTGTGGCCCGAGGTGCCCCTCCATTCCCAGGGAGCCCCTCTGCTGTaGGACCCAGACTCTTGTCCC +
Preference number: 4 (lower is better)
Translates to: ITPEATSIVWPEVPLHSQGAPLL*DPDSCP
Trigger: GGGACAAGAGTCTGGGTCGCACAGCAGAGGGGCTCC...CTGGGAATGGAGGGGCACCTCGGGCCACACAATACTGGTTGCTTCAGGGGTGAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp CTTCCCCAGGGGGAAGACCAGAGAGGCTATGAGTGTGTGTGTGTGTTGTGTATGCGTCCAGGGGAGCTGTaGTGCAGGGCCCCTGCCCAG +
Preference number: 4 (lower is better)
Translates to: LPQGEDQRGYECVCVLCMRPGEL*CRAPAQ
Trigger: CTGGGCAGGGGCCCTGCACCACAGCTCCCCTGGACG...CATACACAACACACACACACACTCATAGCCTCTCTGGTCTTCCCCCTGGGGAAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp TGTGTGTTGTGTATGGGGAAGATGGGTGTCCGAGCGTGTAAGCACACGGATGTACCGCTGCCCCTACCCTaGTCCCTGCCGTTGCGGGGC +
Preference number: 4 (lower is better)
Translates to: CVLCMGKMGVRACKHTDVPLPLP*SLPLRG
Trigger: GCCCCGCAACGGCAGGGACCAGGGTAGGGGCAGCGG...TACATCCGTGTGCTTACACGCTCGGACACCCATCTTCCCCATACACAACACACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp AGATGTAATAACACTGATTCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCGCTGCCCCTACCCTaGTCCCTGCCGTTGCGGGGC +
Preference number: 4 (lower is better)
Translates to: RCNNTDSRRGQGASPLKQPLPLP*SLPLRG
Trigger: GCCCCGCAACGGCAGGGACCAGGGTAGGGGCAGCGG...TTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGAATCAGTGTTATTACATCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp GTGCCCCTCCATTCCCAGACCTGGGTTCCCCCTCGGTTACAGTTAAATAGAGGATCCCGCTCCTGGCGCTaGCGCTCAGCTTCTTCCCGG +
Preference number: 4 (lower is better)
Translates to: VPLHSQTWVPPRLQLNRGSRSWR*RSASSR
Trigger: CCGGGAAGAAGCTGAGCGCCAGCGCCAGGAGCGGGA...TCCTCTATTTAACTGTAACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp AGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCGAGGTGCCCTGGCATCTCCTTGCTTaGCAGGCTCCACTGTGGCTC +
Preference number: 4 (lower is better)
Translates to: RTGGITPEATSIVWPEVPWHLLA*QAPLWL
Trigger: GAGCCACAGTGGAGCCTGCCAAGCAAGGAGATGCCA...GGGCACCTCGGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp TTGATCAGATGTAATAACACTGATTCCAGGCGAGGACAGGGGGCATCACCCCTGCGAGCGCGGGCACACTaGCACGGCCTGGTCCCTGCC +
Preference number: 4 (lower is better)
Translates to: LIRCNNTDSRRGQGASPLRARAH*HGLVPA
Trigger: GGCAGGGACCAGGCCGTGCCAGTGTGCCCGCGCTCG...CAGGGGTGATGCCCCCTGTCCTCGCCTGGAATCAGTGTTATTACATCTGATCAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR TCA 90 bp TTCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCCCTGCTCTTGGCTTCTaGGGACGGGCATTCTTCCTG +
Preference number: 4 (lower is better)
Translates to: FQARTGGITPEATSIVWPPALGF*GRAFFL
Trigger: CAGGAAGAATGCCCGTCCTCAGAAGCCAAGAGCAGG...GGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR TCA 90 bp AGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCGAGGCCACGTCTTCTTCACTaGCCGCTGGATTGCTGCTTC +
Preference number: 4 (lower is better)
Translates to: RRGQGASPLKQPVLCGPRPRLLH*PLDCCF
Trigger: GAAGCAGCAATCCAGCGGTCAGTGAAGAAGACGTGG...CCTCGGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR TCA 90 bp TGTAATAACACTGATTCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCAACGGCTGCAGAGGGATaGGTGCGGTCGGGGTGTGGC +
Preference number: 4 (lower is better)
Translates to: CNNTDSRRGQGASPLKQPTAAEG*VRSGCG
Trigger: GCCACACCCCGACCGCACTCATCCCTCTGCAGCCGT...TGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGAATCAGTGTTATTACA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000125981.8
CDS-3UTR TCA 90 bp TCCACTGTACCCCAGCAAACCAAGGCAAATACTACAAGTGGTCCTTCCCCAGGGAACCCGCCCCTTGGGTaGTGCAGTGGTGCCTCGGGG +
Preference number: 4 (lower is better)
Translates to: STVPQQTKANTTSGPSPGNPPLG*CSGASG
Trigger: CCCCGAGGCACCACTGCATCACCCAAGGGGCGGGTT...CCCTGGGGAAGGACCACTTGTAGTATTTGCCTTGGTTTGCTGGGGTACAGTGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp GTATTGTGTGGCCCGAGGTGCCCCTCCATTCCCAGACCTGGGTTCCCCCTCGGTTTTTTCTCAAGCTTCTaGCTCTGCCGCTCCTCCAGG +
Preference number: 4 (lower is better)
Translates to: VLCGPRCPSIPRPGFPLGFFSSF*LCRSSR
Trigger: CCTGGAGGAGCGGCAGAGGCAGAAGCTTGAGAAAAA...ACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCACCTCGGGCCACACAATAC
60% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR GCA 90 bp AGATGTAATAACACTGATTCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCAGGGGAGCTGTGGTaGAGGGCCCCTGCCCAGGAC +
Preference number: 4 (lower is better)
Translates to: RCNNTDSRRGQGASPLKQPGELW*RAPAQD
Trigger: GTCCTGGGCAGGGGCCCTGCACCACAGCTCCCCTGG...TTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGAATCAGTGTTATTACATCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp TGGCCCGAGGTGCCCCTCCATTCCCAGACCTGGGTTCCCCCTCGGTTACAGTTATCCCATGCGCTCAGCTaGAGGCTGCGATTTCTACTG +
Preference number: 4 (lower is better)
Translates to: WPEVPLHSQTWVPPRLQLSHALS*RLRFLL
Trigger: CAGTAGAAATCGCAGCCTGCAGCTGAGCGCATGGGA...TAACTGTAACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCACCTCGGGCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000122129.8
CDS-3UTR GCA 90 bp GTGCCCCTCCATTCCCAGACCTGGGTTCCCCCTCGGTTACAGTTAAATAGAGGAGCCTCCCGGGCCAGCTaGTCCTCTCGCATTCGCTTG +
Preference number: 4 (lower is better)
Translates to: VPLHSQTWVPPRLQLNRGASRAS*SSRIRL
Trigger: CAAGCGAATGCGAGAGGAGCAGCTGGCCCGGGAGGC...TCCTCTATTTAACTGTAACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp TTCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCACCCTGGCATCTCCTTaGTTGGCAGGCTCCACTGTG +
Preference number: 4 (lower is better)
Translates to: FQARTGGITPEATSIVWPTLASP*LAGSTV
Trigger: CACAGTGGAGCCTGCCAAGCAAGGAGATGCCAGGGT...GGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp GTATTGTGTGGCCCGAGGTGCCCCTCCATTCCCAGACCTGGGTTCCCCCTCGGTCTTGAGGAAGGCTTCTaGCTCTGCAAATGGGAGGAG +
Preference number: 4 (lower is better)
Translates to: VLCGPRCPSIPRPGFPLGLEEGF*LCKWEE
Trigger: CTCCTCCCATTTGCAGAGGCAGAAGCCTTCCTCAAG...ACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCACCTCGGGCCACACAATAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp AGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCGAGGGTGACCTGTGGAGGCTaGACCACTGCTTTCTTGAGG +
Preference number: 4 (lower is better)
Translates to: RRGQGASPLKQPVLCGPRVTCGG*TTAFLR
Trigger: CCTCAAGAAAGCAGTGGTGCAGCCTCCACAGGTCAC...CCTCGGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp AGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCGAGGTGCCCGTGACCTGTGGAGGCTaGACCACTGCTTTCTTGAGG +
Preference number: 4 (lower is better)
Translates to: RTGGITPEATSIVWPEVPVTCGG*TTAFLR
Trigger: CCTCAAGAAAGCAGTGGTGCAGCCTCCACAGGTCAC...GGGCACCTCGGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp AGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCGAGGGACGGTCTTGGCTCTTaGGGGATCCTGGCTAACACA +
Preference number: 4 (lower is better)
Translates to: RRGQGASPLKQPVLCGPRDGLGS*GILANT
Trigger: TGTGTTAGCCAGGATCCCCCAAGAGCCAAGACCGTC...CCTCGGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CCA 90 bp TCACCAGTCTGTAAGGTGCGGATTAAAAACAAAGAGGAACTCTGCCCCCAGGGGCGTCCAGGGGAGCTGTaGTGCAGGGCCCCTGCCCAG +
Preference number: 4 (lower is better)
Translates to: SPVCKVRIKNKEELCPQGRPGEL*CRAPAQ
Trigger: CTGGGCAGGGGCCCTGCACCACAGCTCCCCTGGACG...CCCCTGGGGGCAGAGTTCCTCTTTGTTTTTAATCCGCACCTTACAGACTGGTGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 22 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp TTGATCAGATGTAATAACACTGATTCCAGGCGAGGACAGGGGGCATCACCCCTGCGTCCAGGGGAGCTGTaGTGCAGGGCCCCTGCCCAG +
Preference number: 4 (lower is better)
Translates to: LIRCNNTDSRRGQGASPLRPGEL*CRAPAQ
Trigger: CTGGGCAGGGGCCCTGCACCACAGCTCCCCTGGACG...CAGGGGTGATGCCCCCTGTCCTCGCCTGGAATCAGTGTTATTACATCTGATCAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp AGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCGAGGAGGTCTGATAGACGCTaGCAGCGACTGGCGCTTCTT +
Preference number: 4 (lower is better)
Translates to: RRGQGASPLKQPVLCGPRRSDRR*QRLALL
Trigger: AAGAAGCGCCAGTCGCTGCCAGCGTCTATCAGACCT...CCTCGGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp TGTGTGTTGTGTATGGGGAAGATGGGTGTCCGAGCGTGTAAGCACACGGATGTACTTCTGAGGCTGGGCTaGGGTGGGCGAGGGCACCGG +
Preference number: 4 (lower is better)
Translates to: CVLCMGKMGVRACKHTDVLLRLG*GGRGHR
Trigger: CCGGTGCCCTCGCCCACCCCAGCCCAGCCTCAGAAG...TACATCCGTGTGCTTACACGCTCGGACACCCATCTTCCCCATACACAACACACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp TCCACTGTACCCCAGCAAACCAAGGCAAATACTACAAGTGGTCCTTCCCCAGGGTCCCGCTCCTGGCGCTaGCGCTCAGCTTCTTCCCGG +
Preference number: 4 (lower is better)
Translates to: STVPQQTKANTTSGPSPGSRSWR*RSASSR
Trigger: CCGGGAAGAAGCTGAGCGCCAGCGCCAGGAGCGGGA...CCCTGGGGAAGGACCACTTGTAGTATTTGCCTTGGTTTGCTGGGGTACAGTGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp TTCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCTGGCATCTCCTTGCTTaGCAGGCTCCACTGTGGCTC +
Preference number: 4 (lower is better)
Translates to: FQARTGGITPEATSIVWPWHLLA*QAPLWL
Trigger: GAGCCACAGTGGAGCCTGCCAAGCAAGGAGATGCCA...GGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR TCA 90 bp GTATTGTGTGGCCCGAGGTGCCCCTCCATTCCCAGACCTGGGTTCCCCCTCGGTCGTGGCAGAGGACTTTaGGAGCCGCTTGTTGATTAT +
Preference number: 4 (lower is better)
Translates to: VLCGPRCPSIPRPGFPLGRGRGL*EPLVDY
Trigger: ATAATCAACAAGCGGCTCTCAAAGTCCTCTGCCACG...ACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCACCTCGGGCCACACAATAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000122129.8
CDS-3UTR TCA 90 bp AGGGGCAGTCCTGCTTTCAGCCAAAGACATCACCAGTCTGTAAGGTGCGGATTAAACCCGCCCCTTGGGTaGTGCAGTGGTGCCTCGGGG +
Preference number: 4 (lower is better)
Translates to: RGSPAFSQRHHQSVRCGLNPPLG*CSGASG
Trigger: CCCCGAGGCACCACTGCATCACCCAAGGGGCGGGTT...TAATCCGCACCTTACAGACTGGTGATGTCTTTGGCTGAAAGCAGGACTGCCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR TCA 90 bp AGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCGAGGTGCAGGGATCTGTGTTaGGGATTGCTCCTTCTGAGG +
Preference number: 4 (lower is better)
Translates to: RRGQGASPLKQPVLCGPRCRDLC*GLLLLR
Trigger: CCTCAGAAGGAGCAATCCTCAACACAGATCCCTGCA...CCTCGGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR TCA 90 bp TCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCGGGTTTCGGCGGCTTCTaGTTTCCGAGTCCTCTTCAT +
Preference number: 4 (lower is better)
Translates to: SRRGQGASPLKQPVLCGPGFGGF*FPSPLH
Trigger: ATGAAGAGGACTCGGAAATCAGAAGCCGCCGAAACC...CGGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR TCA 90 bp AGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCGAGGGGTTTCGGCGGCTTCTaGTTTCCGAGTCCTCTTCAT +
Preference number: 4 (lower is better)
Translates to: RRGQGASPLKQPVLCGPRGFGGF*FPSPLH
Trigger: ATGAAGAGGACTCGGAAATCAGAAGCCGCCGAAACC...CCTCGGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp TTCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCGACGATCCACAATGCTaGTCTCCCATGCGCTCAGCT +
Preference number: 4 (lower is better)
Translates to: FQARTGGITPEATSIVWPDDPQC*SPMRSA
Trigger: AGCTGAGCGCATGGGAGAGCAGCATTGTGGATCGTC...GGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp TCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCGTCAGACGATCCACAATaGTGCTCTCCCATGCGCTCA +
Preference number: 4 (lower is better)
Translates to: SRRGQGASPLKQPVLCGPSDDPQ*CSPMRS
Trigger: TGAGCGCATGGGAGAGCAGCATTGTGGATCGTCTGA...CGGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp AGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCGAGGTCAGACGATCCACAATaGTGCTCTCCCATGCGCTCA +
Preference number: 4 (lower is better)
Translates to: RRGQGASPLKQPVLCGPRSDDPQ*CSPMRS
Trigger: TGAGCGCATGGGAGAGCAGCATTGTGGATCGTCTGA...CCTCGGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp TGTGTGTTGTGTATGGGGAAGATGGGTGTCCGAGCGTGTAAGCACACGGATGTACTGCAGAGGGATGAGTaGGGTCGGGGTGTGGCCCGG +
Preference number: 4 (lower is better)
Translates to: CVLCMGKMGVRACKHTDVLQRDE*GRGVAR
Trigger: CCGGGCCACACCCCGACCGCACTCATCCCTCTGCAG...TACATCCGTGTGCTTACACGCTCGGACACCCATCTTCCCCATACACAACACACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp ATCACCCCTGAAGCAACCAGTATTGTGTGGCCCGAGGTGCCCCTCCATTCCCAGGCTGGGGCTCTCTTTTaGCTCCTCCTTCCTCCGAAC +
Preference number: 4 (lower is better)
Translates to: ITPEATSIVWPEVPLHSQAGALF*LLLPPN
Trigger: GTTCGGAGGAAGGAGGAGGCAAAAGAGAGCCCCAGC...CTGGGAATGGAGGGGCACCTCGGGCCACACAATACTGGTTGCTTCAGGGGTGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp TGGCCCGAGGTGCCCCTCCATTCCCAGACCTGGGTTCCCCCTCGGTTACAGTTATTGTCCCTTTCAGCCTaGAGCTTCCGCTCCTGTTCT +
Preference number: 4 (lower is better)
Translates to: WPEVPLHSQTWVPPRLQLLSLSA*SFRSCS
Trigger: AGAACAGGAGCGGAAGCTGCAGGCTGAAAGGGACAA...TAACTGTAACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCACCTCGGGCCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp AGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCGAGGTGCCCTTGTCCCTTTCAGCCTaGAGCTTCCGCTCCTGTTCT +
Preference number: 4 (lower is better)
Translates to: RTGGITPEATSIVWPEVPLSLSA*SFRSCS
Trigger: AGAACAGGAGCGGAAGCTGCAGGCTGAAAGGGACAA...GGGCACCTCGGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp TGGCCCGAGGTGCCCCTCCATTCCCAGACCTGGGTTCCCCCTCGGTTACAGTTAGTCTCCTTTGCATCCTaGTTCTTGGTTTCGGCGGCT +
Preference number: 4 (lower is better)
Translates to: WPEVPLHSQTWVPPRLQLVSFAS*FLVSAA
Trigger: AGCCGCCGAAACCAAGAAGCAGGATGCAAAGGAGAC...TAACTGTAACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCACCTCGGGCCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp GTATTGTGTGGCCCGAGGTGCCCCTCCATTCCCAGACCTGGGTTCCCCCTCGGTAGCTGCGGTCTCCTTTaGATCCTGCTTCTTGGTTTC +
Preference number: 4 (lower is better)
Translates to: VLCGPRCPSIPRPGFPLGSCGLL*ILLLGF
Trigger: GAAACCAAGAAGCAGGATGCAAAGGAGACCGCAGCT...ACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCACCTCGGGCCACACAATAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp AGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCGAGGTGCCCGCCGGAATTGTTAGCTaGGGTCTCCTTTGCATCCTG +
Preference number: 4 (lower is better)
Translates to: RTGGITPEATSIVWPEVPAGIVS*GLLCIL
Trigger: CAGGATGCAAAGGAGACCGCAGCTAACAATTCCGGC...GGGCACCTCGGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp TCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCGCTTGAGGAAGGCTTCTaGCTCTGCAAATGGGAGGAG +
Preference number: 4 (lower is better)
Translates to: SRRGQGASPLKQPVLCGPLEEGF*LCKWEE
Trigger: CTCCTCCCATTTGCAGAGGCAGAAGCCTTCCTCAAG...CGGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp TGGCCCGAGGTGCCCCTCCATTCCCAGACCTGGGTTCCCCCTCGGTTACAGTTATGGAGGCTGCACCACTaGTTTCTTGAGGAAGGCTTC +
Preference number: 4 (lower is better)
Translates to: WPEVPLHSQTWVPPRLQLWRLHH*FLEEGF
Trigger: GAAGCCTTCCTCAAGAAAGCAGTGGTGCAGCCTCCA...TAACTGTAACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCACCTCGGGCCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp TCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCGTGGAGGCTGCACCACTaGTTTCTTGAGGAAGGCTTC +
Preference number: 4 (lower is better)
Translates to: SRRGQGASPLKQPVLCGPWRLHH*FLEEGF
Trigger: GAAGCCTTCCTCAAGAAAGCAGTGGTGCAGCCTCCA...CGGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp TTCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCGTGACCTGTGGAGGCTaGACCACTGCTTTCTTGAGG +
Preference number: 4 (lower is better)
Translates to: FQARTGGITPEATSIVWPVTCGG*TTAFLR
Trigger: CCTCAAGAAAGCAGTGGTGCAGCCTCCACAGGTCAC...GGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp GTGCCCCTCCATTCCCAGACCTGGGTTCCCCCTCGGTTACAGTTAAATAGAGGACAGAGGCTGGCACTGTaGTGGGGGATGGTTGGCTGC +
Preference number: 4 (lower is better)
Translates to: VPLHSQTWVPPRLQLNRGQRLAL*WGMVGC
Trigger: GCAGCCAACCATCCCCCACCACAGTGCCAGCCTCTG...TCCTCTATTTAACTGTAACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CCA 90 bp TTCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCAGGTCTGATAGACGCTaGCAGCGACTGGCGCTTCTT +
Preference number: 4 (lower is better)
Translates to: FQARTGGITPEATSIVWPRSDRR*QRLALL
Trigger: AAGAAGCGCCAGTCGCTGCCAGCGTCTATCAGACCT...GGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp GTGCCCCTCCATTCCCAGACCTGGGTTCCCCCTCGGTTACAGTTAAATAGAGGATCCGAACCCGCCCCTTaGGTGATGCAGTGGTGCCTC +
Preference number: 4 (lower is better)
Translates to: VPLHSQTWVPPRLQLNRGSEPAP*VMQWCL
Trigger: GAGGCACCACTGCATCACCCAAGGGGCGGGTTCGGA...TCCTCTATTTAACTGTAACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp CTTCCCCAGGGGGAAGACCAGAGAGGCTATGAGTGTGTGTGTGTGTTGTGTATGCAGCCAGGAGCCGCGTaGCTTCCTCTCGGTCTGTGG +
Preference number: 4 (lower is better)
Translates to: LPQGEDQRGYECVCVLCMQPGAA*LPLGLW
Trigger: CCACAGACCGAGAGGAAGCCACGCGGCTCCTGGCTG...CATACACAACACACACACACACTCATAGCCTCTCTGGTCTTCCCCCTGGGGAAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp AGGGGCAGTCCTGCTTTCAGCCAAAGACATCACCAGTCTGTAAGGTGCGGATTATCCCGCTCCTGGCGCTaGCGCTCAGCTTCTTCCCGG +
Preference number: 4 (lower is better)
Translates to: RGSPAFSQRHHQSVRCGLSRSWR*RSASSR
Trigger: CCGGGAAGAAGCTGAGCGCCAGCGCCAGGAGCGGGA...TAATCCGCACCTTACAGACTGGTGATGTCTTTGGCTGAAAGCAGGACTGCCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp AGATGTAATAACACTGATTCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAATCCCGCTCCTGGCGCTaGCGCTCAGCTTCTTCCCGG +
Preference number: 4 (lower is better)
Translates to: RCNNTDSRRGQGASPLKQSRSWR*RSASSR
Trigger: CCGGGAAGAAGCTGAGCGCCAGCGCCAGGAGCGGGA...TTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGAATCAGTGTTATTACATCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR TCA 90 bp CGAGCGTGTAAGCACACGGATGTACTGAGGGGCAGTCCTGCTTTCAGCCAAAGAGGGAGCTGGCTGAGGTaGGATCTGCCCTGTGGGATT +
Preference number: 4 (lower is better)
Translates to: RACKHTDVLRGSPAFSQRGSWLR*DLPCGI
Trigger: AATCCCACAGGGCAGATCTCACCTCAGCCAGCTCCC...TCTTTGGCTGAAAGCAGGACTGCCCCTCAGTACATCCGTGTGCTTACACGCTCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR TCA 90 bp TCACCAGTCTGTAAGGTGCGGATTAAAAACAAAGAGGAACTCTGCCCCCAGGGGGCGACTGGCGCTTCTTaGGGTTCCGTTCGCGGGCCA +
Preference number: 4 (lower is better)
Translates to: SPVCKVRIKNKEELCPQGATGAS*GSVRGP
Trigger: TGGCCCGCGAACGGAACCTCAAGAAGCGCCAGTCGC...CCCCTGGGGGCAGAGTTCCTCTTTGTTTTTAATCCGCACCTTACAGACTGGTGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR TCA 90 bp TGTGTGTTGTGTATGGGGAAGATGGGTGTCCGAGCGTGTAAGCACACGGATGTAGCGACTGGCGCTTCTTaGGGTTCCGTTCGCGGGCCA +
Preference number: 4 (lower is better)
Translates to: CVLCMGKMGVRACKHTDVATGAS*GSVRGP
Trigger: TGGCCCGCGAACGGAACCTCAAGAAGCGCCAGTCGC...TACATCCGTGTGCTTACACGCTCGGACACCCATCTTCCCCATACACAACACACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR TCA 90 bp TTCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCGGTTTCGGCGGCTTCTaGTTTCCGAGTCCTCTTCAT +
Preference number: 4 (lower is better)
Translates to: FQARTGGITPEATSIVWPGFGGF*FPSPLH
Trigger: ATGAAGAGGACTCGGAAATCAGAAGCCGCCGAAACC...GGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp TCACCAGTCTGTAAGGTGCGGATTAAAAACAAAGAGGAACTCTGCCCCCAGGGGTCGGCTTTAAGCCGCTaGTCCTCCAGCCGTCGGCGG +
Preference number: 4 (lower is better)
Translates to: SPVCKVRIKNKEELCPQGSALSR*SSSRRR
Trigger: CCGCCGACGGCTGGAGGAGCAGCGGCTTAAAGCCGA...CCCCTGGGGGCAGAGTTCCTCTTTGTTTTTAATCCGCACCTTACAGACTGGTGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR GCA 90 bp TCCACTGTACCCCAGCAAACCAAGGCAAATACTACAAGTGGTCCTTCCCCAGGGCAGGACCAGCGCTGTTaGCGGATCTCAGCCCACGTC +
Preference number: 4 (lower is better)
Translates to: STVPQQTKANTTSGPSPGQDQRC*RISAHV
Trigger: GACGTGGGCTGAGATCCGGCAACAGCGCTGGTCCTG...CCCTGGGGAAGGACCACTTGTAGTATTTGCCTTGGTTTGCTGGGGTACAGTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp TCCACTGTACCCCAGCAAACCAAGGCAAATACTACAAGTGGTCCTTCCCCAGGGGCACACTGGCACGGCTaGAGAGGGATGAGTGCGGTC +
Preference number: 4 (lower is better)
Translates to: STVPQQTKANTTSGPSPGAHWHG*RGMSAV
Trigger: GACCGCACTCATCCCTCTGCAGCCGTGCCAGTGTGC...CCCTGGGGAAGGACCACTTGTAGTATTTGCCTTGGTTTGCTGGGGTACAGTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp TCACCAGTCTGTAAGGTGCGGATTAAAAACAAAGAGGAACTCTGCCCCCAGGGGGCCTCCCGGGCCAGCTaGTCCTCTCGCATTCGCTTG +
Preference number: 4 (lower is better)
Translates to: SPVCKVRIKNKEELCPQGASRAS*SSRIRL
Trigger: CAAGCGAATGCGAGAGGAGCAGCTGGCCCGGGAGGC...CCCCTGGGGGCAGAGTTCCTCTTTGTTTTTAATCCGCACCTTACAGACTGGTGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp TTCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCGCCGGAATTGTTAGCTaGGGTCTCCTTTGCATCCTG +
Preference number: 4 (lower is better)
Translates to: FQARTGGITPEATSIVWPAGIVS*GLLCIL
Trigger: CAGGATGCAAAGGAGACCGCAGCTAACAATTCCGGC...GGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp CTTCCCCAGGGGGAAGACCAGAGAGGCTATGAGTGTGTGTGTGTGTTGTGTATGCGCTCAGCTGCAGGCTaGGATGTCCAGGGGAGCTGT +
Preference number: 4 (lower is better)
Translates to: LPQGEDQRGYECVCVLCMRSAAG*DVQGSC
Trigger: ACAGCTCCCCTGGACATCGCAGCCTGCAGCTGAGCG...CATACACAACACACACACACACTCATAGCCTCTCTGGTCTTCCCCCTGGGGAAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000106132.3
CDS-3UTR CCA 90 bp CGAGCGTGTAAGCACACGGATGTACTGAGGGGCAGTCCTGCTTTCAGCCAAAGATGGGGCCCCTGCTCTTaGCTTCTGAGGACGGGCATT +
Preference number: 4 (lower is better)
Translates to: RACKHTDVLRGSPAFSQRWGPCS*LLRTGI
Trigger: AATGCCCGTCCTCAGAAGCCAAGAGCAGGGGCCCCA...TCTTTGGCTGAAAGCAGGACTGCCCCTCAGTACATCCGTGTGCTTACACGCTCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CCA 90 bp TGTGTGTTGTGTATGGGGAAGATGGGTGTCCGAGCGTGTAAGCACACGGATGTACTGTGGCTGTGGGGGTaGGGCCCCTGCTCTTGGCTT +
Preference number: 4 (lower is better)
Translates to: CVLCMGKMGVRACKHTDVLWLWG*GPCSWL
Trigger: AAGCCAAGAGCAGGGGCCCCACCCCCACAGCCACAG...TACATCCGTGTGCTTACACGCTCGGACACCCATCTTCCCCATACACAACACACA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CCA 90 bp AGATGTAATAACACTGATTCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAACTGTGGCTGTGGGGGTaGGGCCCCTGCTCTTGGCTT +
Preference number: 4 (lower is better)
Translates to: RCNNTDSRRGQGASPLKQLWLWG*GPCSWL
Trigger: AAGCCAAGAGCAGGGGCCCCACCCCCACAGCCACAG...TTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGAATCAGTGTTATTACATCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CCA 90 bp GCTATGAGTGTGTGTGTGTGTTGTGTATGGGGAAGATGGGTGTCCGAGCGTGTACTGTGGCTGTGGGGGTaGGGCCCCTGCTCTTGGCTT +
Preference number: 4 (lower is better)
Translates to: AMSVCVCCVWGRWVSERVLWLWG*GPCSWL
Trigger: AAGCCAAGAGCAGGGGCCCCACCCCCACAGCCACAG...TACACGCTCGGACACCCATCTTCCCCATACACAACACACACACACACTCATAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CCA 90 bp CTTCCCCAGGGGGAAGACCAGAGAGGCTATGAGTGTGTGTGTGTGTTGTGTATGCAGAGGCTGGCACTGTaGTGGGGGATGGTTGGCTGC +
Preference number: 4 (lower is better)
Translates to: LPQGEDQRGYECVCVLCMQRLAL*WGMVGC
Trigger: GCAGCCAACCATCCCCCACCACAGTGCCAGCCTCTG...CATACACAACACACACACACACTCATAGCCTCTCTGGTCTTCCCCCTGGGGAAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CCA 90 bp AGATGTAATAACACTGATTCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAATGGCCGCCAGGTACTTaGCCCGCTCTTCTCGGCGCT +
Preference number: 4 (lower is better)
Translates to: RCNNTDSRRGQGASPLKQWPPGT*PALLGA
Trigger: AGCGCCGAGAAGAGCGGGCCAAGTACCTGGCGGCCA...TTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGAATCAGTGTTATTACATCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CCA 90 bp TTCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCTTTCCCGGAGCGCCTTaGCTTTTTCCTCCTTCTCCA +
Preference number: 4 (lower is better)
Translates to: FQARTGGITPEATSIVWPFPGAP*LFPPSP
Trigger: TGGAGAAGGAGGAAAAAGCCAAGGCGCTCCGGGAAA...GGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CCA 90 bp CTTCCCCAGGGGGAAGACCAGAGAGGCTATGAGTGTGTGTGTGTGTTGTGTATGTCCGAACCCGCCCCTTaGGTGATGCAGTGGTGCCTC +
Preference number: 4 (lower is better)
Translates to: LPQGEDQRGYECVCVLCMSEPAP*VMQWCL
Trigger: GAGGCACCACTGCATCACCCAAGGGGCGGGTTCGGA...CATACACAACACACACACACACTCATAGCCTCTCTGGTCTTCCCCCTGGGGAAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp TCCACTGTACCCCAGCAAACCAAGGCAAATACTACAAGTGGTCCTTCCCCAGGGTCCGAACCCGCCCCTTaGGTGATGCAGTGGTGCCTC +
Preference number: 4 (lower is better)
Translates to: STVPQQTKANTTSGPSPGSEPAP*VMQWCL
Trigger: GAGGCACCACTGCATCACCCAAGGGGCGGGTTCGGA...CCCTGGGGAAGGACCACTTGTAGTATTTGCCTTGGTTTGCTGGGGTACAGTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp TCCACTGTACCCCAGCAAACCAAGGCAAATACTACAAGTGGTCCTTCCCCAGGGCTCTGTTCCCGAGCCTaGCGCCGCTTTTCAGCCAGG +
Preference number: 4 (lower is better)
Translates to: STVPQQTKANTTSGPSPGLCSRA*RRFSAR
Trigger: CCTGGCTGAAAAGCGGCGCCAGGCTCGGGAACAGAG...CCCTGGGGAAGGACCACTTGTAGTATTTGCCTTGGTTTGCTGGGGTACAGTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp GTATTGTGTGGCCCGAGGTGCCCCTCCATTCCCAGACCTGGGTTCCCCCTCGGTTTGCATCCTGCTTCTTaGTTTCGGCGGCTTCTGATT +
Preference number: 4 (lower is better)
Translates to: VLCGPRCPSIPRPGFPLGLHPAS*FRRLLI
Trigger: AATCAGAAGCCGCCGAAACCAAGAAGCAGGATGCAA...ACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCACCTCGGGCCACACAATAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp CTTCCCCAGGGGGAAGACCAGAGAGGCTATGAGTGTGTGTGTGTGTTGTGTATGCTCCACTGTGGCTCCTaGGGGGCCAGCTCCTCTTTC +
Preference number: 4 (lower is better)
Translates to: LPQGEDQRGYECVCVLCMLHCGS*GASSSF
Trigger: GAAAGAGGAGCTGGCCCCCCAGGAGCCACAGTGGAG...CATACACAACACACACACACACTCATAGCCTCTCTGGTCTTCCCCCTGGGGAAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp TGTAATAACACTGATTCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCACTCCACTGTGGCTCCTaGGGGGCCAGCTCCTCTTTC +
Preference number: 4 (lower is better)
Translates to: CNNTDSRRGQGASPLKQPLHCGS*GASSSF
Trigger: GAAAGAGGAGCTGGCCCCCCAGGAGCCACAGTGGAG...TGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGAATCAGTGTTATTACA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp TGTAATAACACTGATTCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCAGAGAAGCCGTTCTCCTaGTGCGCTGGGAGAGGCTGC +
Preference number: 4 (lower is better)
Translates to: CNNTDSRRGQGASPLKQPEKPFS*CAGRGC
Trigger: GCAGCCTCTCCCAGCGCACCAGGAGAACGGCTTCTC...TGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGAATCAGTGTTATTACA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR TCA 90 bp TCCACTGTACCCCAGCAAACCAAGGCAAATACTACAAGTGGTCCTTCCCCAGGGGGGAGCTGGCTGAGGTaGGATCTGCCCTGTGGGATT +
Preference number: 4 (lower is better)
Translates to: STVPQQTKANTTSGPSPGGSWLR*DLPCGI
Trigger: AATCCCACAGGGCAGATCTCACCTCAGCCAGCTCCC...CCCTGGGGAAGGACCACTTGTAGTATTTGCCTTGGTTTGCTGGGGTACAGTGGA
57% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR TCA 90 bp CGCCTCTTCCACATAGCACAAGCTATTTACAGTATTCACATCCACTGTACCCCACGTTGCGGGGCAGTGTaGCCGCGCTGCGACTCCGAG +
Preference number: 4 (lower is better)
Translates to: RLFHIAQAIYSIHIHCTPRCGAV*PRCDSE
Trigger: CTCGGAGTCGCAGCGCGGTCACACTGCCCCGCAACG...TGGGGTACAGTGGATGTGAATACTGTAAATAGCTTGTGCTATGTGGAAGAGGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp ACATCCACTGTACCCCAGCAAACCAAGGCAAATACTACAAGTGGTCCTTCCCCATCGGCTTTAAGCCGCTaGTCCTCCAGCCGTCGGCGG +
Preference number: 4 (lower is better)
Translates to: TSTVPQQTKANTTSGPSPSALSR*SSSRRR
Trigger: CCGCCGACGGCTGGAGGAGCAGCGGCTTAAAGCCGA...TGGGGAAGGACCACTTGTAGTATTTGCCTTGGTTTGCTGGGGTACAGTGGATGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR GCA 90 bp TGTAATAACACTGATTCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCATGCGCTGGGAGAGGCTaGAGGCCATTTACCAGGGAC +
Preference number: 4 (lower is better)
Translates to: CNNTDSRRGQGASPLKQPCAGRG*RPFTRD
Trigger: GTCCCTGGTAAATGGCCTGCAGCCTCTCCCAGCGCA...TGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGAATCAGTGTTATTACA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp TTGATCAGATGTAATAACACTGATTCCAGGCGAGGACAGGGGGCATCACCCCTGGGAGCCCCTCTGCTGTaGGACCCAGACTCTTGTCCC +
Preference number: 4 (lower is better)
Translates to: LIRCNNTDSRRGQGASPLGAPLL*DPDSCP
Trigger: GGGACAAGAGTCTGGGTCGCACAGCAGAGGGGCTCC...CAGGGGTGATGCCCCCTGTCCTCGCCTGGAATCAGTGTTATTACATCTGATCAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp GCTATGAGTGTGTGTGTGTGTTGTGTATGGGGAAGATGGGTGTCCGAGCGTGTAGGAGCCCCTCTGCTGTaGGACCCAGACTCTTGTCCC +
Preference number: 4 (lower is better)
Translates to: AMSVCVCCVWGRWVSERVGAPLL*DPDSCP
Trigger: GGGACAAGAGTCTGGGTCGCACAGCAGAGGGGCTCC...TACACGCTCGGACACCCATCTTCCCCATACACAACACACACACACACTCATAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp TTCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCATTCCCTGGTTCCAGTaGGAGCTGCTTAGGATTCGT +
Preference number: 4 (lower is better)
Translates to: FQARTGGITPEATSIVWPIPWFQ*ELLRIR
Trigger: ACGAATCCTAAGCAGCTCCCACTGGAACCAGGGAAT...GGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CCA 90 bp TGTGTGTTGTGTATGGGGAAGATGGGTGTCCGAGCGTGTAAGCACACGGATGTAAGGGCTGTCAGAGGCTaGCACTGTGGTGGGGGATGG +
Preference number: 4 (lower is better)
Translates to: CVLCMGKMGVRACKHTDVRAVRG*HCGGGW
Trigger: CCATCCCCCACCACAGTGCCAGCCTCTGACAGCCCT...TACATCCGTGTGCTTACACGCTCGGACACCCATCTTCCCCATACACAACACACA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CCA 90 bp AGGGGCAGTCCTGCTTTCAGCCAAAGACATCACCAGTCTGTAAGGTGCGGATTAAGGGCTGTCAGAGGCTaGCACTGTGGTGGGGGATGG +
Preference number: 4 (lower is better)
Translates to: RGSPAFSQRHHQSVRCGLRAVRG*HCGGGW
Trigger: CCATCCCCCACCACAGTGCCAGCCTCTGACAGCCCT...TAATCCGCACCTTACAGACTGGTGATGTCTTTGGCTGAAAGCAGGACTGCCCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CCA 90 bp CGAGCGTGTAAGCACACGGATGTACTGAGGGGCAGTCCTGCTTTCAGCCAAAGAGGCTGCGATTTCTACTaGGGGAGTTCCAGAGCGTGG +
Preference number: 4 (lower is better)
Translates to: RACKHTDVLRGSPAFSQRGCDFY*GSSRAW
Trigger: CCACGCTCTGGAACTCCCCCAGTAGAAATCGCAGCC...TCTTTGGCTGAAAGCAGGACTGCCCCTCAGTACATCCGTGTGCTTACACGCTCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000122129.8
CDS-3UTR CCA 90 bp CGAGCGTGTAAGCACACGGATGTACTGAGGGGCAGTCCTGCTTTCAGCCAAAGACCAGGAAGGAGAGGGTaGGCGTCATCAGACGATCCA +
Preference number: 4 (lower is better)
Translates to: RACKHTDVLRGSPAFSQRPGRRG*ASSDDP
Trigger: TGGATCGTCTGATGACGCCCACCCTCTCCTTCCTGG...TCTTTGGCTGAAAGCAGGACTGCCCCTCAGTACATCCGTGTGCTTACACGCTCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp TGTAATAACACTGATTCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCACTTCCTCTCGGTCTGTaGTGCCCGCCATGGGTTTGC +
Preference number: 4 (lower is better)
Translates to: CNNTDSRRGQGASPLKQPLPLGL*CPPWVC
Trigger: GCAAACCCATGGCGGGCACCACAGACCGAGAGGAAG...TGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGAATCAGTGTTATTACA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp AGATGTAATAACACTGATTCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAACTCTGTTCCCGAGCCTaGCGCCGCTTTTCAGCCAGG +
Preference number: 4 (lower is better)
Translates to: RCNNTDSRRGQGASPLKQLCSRA*RRFSAR
Trigger: CCTGGCTGAAAAGCGGCGCCAGGCTCGGGAACAGAG...TTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGAATCAGTGTTATTACATCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp AGGGGCAGTCCTGCTTTCAGCCAAAGACATCACCAGTCTGTAAGGTGCGGATTACTCTGTTCCCGAGCCTaGCGCCGCTTTTCAGCCAGG +
Preference number: 4 (lower is better)
Translates to: RGSPAFSQRHHQSVRCGLLCSRA*RRFSAR
Trigger: CCTGGCTGAAAAGCGGCGCCAGGCTCGGGAACAGAG...TAATCCGCACCTTACAGACTGGTGATGTCTTTGGCTGAAAGCAGGACTGCCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp TGTGTGTTGTGTATGGGGAAGATGGGTGTCCGAGCGTGTAAGCACACGGATGTACTCTGTTCCCGAGCCTaGCGCCGCTTTTCAGCCAGG +
Preference number: 4 (lower is better)
Translates to: CVLCMGKMGVRACKHTDVLCSRA*RRFSAR
Trigger: CCTGGCTGAAAAGCGGCGCCAGGCTCGGGAACAGAG...TACATCCGTGTGCTTACACGCTCGGACACCCATCTTCCCCATACACAACACACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp TGTAATAACACTGATTCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCATGCTTTTCCCGCTCCTaGCGCTGGCGCTCAGCTTCT +
Preference number: 4 (lower is better)
Translates to: CNNTDSRRGQGASPLKQPCFSRS*RWRSAS
Trigger: AGAAGCTGAGCGCCAGCGCCAGGAGCGGGAAAAGCA...TGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGAATCAGTGTTATTACA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp TGGCCCGAGGTGCCCCTCCATTCCCAGACCTGGGTTCCCCCTCGGTTACAGTTATTGCATCCTGCTTCTTaGTTTCGGCGGCTTCTGATT +
Preference number: 4 (lower is better)
Translates to: WPEVPLHSQTWVPPRLQLLHPAS*FRRLLI
Trigger: AATCAGAAGCCGCCGAAACCAAGAAGCAGGATGCAA...TAACTGTAACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCACCTCGGGCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp AGGGGCAGTCCTGCTTTCAGCCAAAGACATCACCAGTCTGTAAGGTGCGGATTACTCCACTGTGGCTCCTaGGGGGCCAGCTCCTCTTTC +
Preference number: 4 (lower is better)
Translates to: RGSPAFSQRHHQSVRCGLLHCGS*GASSSF
Trigger: GAAAGAGGAGCTGGCCCCCCAGGAGCCACAGTGGAG...TAATCCGCACCTTACAGACTGGTGATGTCTTTGGCTGAAAGCAGGACTGCCCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp TGTGTGTTGTGTATGGGGAAGATGGGTGTCCGAGCGTGTAAGCACACGGATGTAGAGAAGCCGTTCTCCTaGTGCGCTGGGAGAGGCTGC +
Preference number: 4 (lower is better)
Translates to: CVLCMGKMGVRACKHTDVEKPFS*CAGRGC
Trigger: GCAGCCTCTCCCAGCGCACCAGGAGAACGGCTTCTC...TACATCCGTGTGCTTACACGCTCGGACACCCATCTTCCCCATACACAACACACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR TCA 90 bp CTTCCCCAGGGGGAAGACCAGAGAGGCTATGAGTGTGTGTGTGTGTTGTGTATGCCTGCTCTTGGCTTCTaGGGACGGGCATTCTTCCTG +
Preference number: 4 (lower is better)
Translates to: LPQGEDQRGYECVCVLCMPALGF*GRAFFL
Trigger: CAGGAAGAATGCCCGTCCTCAGAAGCCAAGAGCAGG...CATACACAACACACACACACACTCATAGCCTCTCTGGTCTTCCCCCTGGGGAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR GCA 90 bp AGGGGCAGTCCTGCTTTCAGCCAAAGACATCACCAGTCTGTAAGGTGCGGATTATTCTGCAGTCGCTCCTaGTCCTCCTGCTCAGCCTGC +
Preference number: 4 (lower is better)
Translates to: RGSPAFSQRHHQSVRCGLFCSRS*SSCSAC
Trigger: GCAGGCTGAGCAGGAGGAGCAGGAGCGACTGCAGAA...TAATCCGCACCTTACAGACTGGTGATGTCTTTGGCTGAAAGCAGGACTGCCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp TTGATCAGATGTAATAACACTGATTCCAGGCGAGGACAGGGGGCATCACCCCTGTGCGCTGGGAGAGGCTaGAGGCCATTTACCAGGGAC +
Preference number: 4 (lower is better)
Translates to: LIRCNNTDSRRGQGASPLCAGRG*RPFTRD
Trigger: GTCCCTGGTAAATGGCCTGCAGCCTCTCCCAGCGCA...CAGGGGTGATGCCCCCTGTCCTCGCCTGGAATCAGTGTTATTACATCTGATCAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp ACATCCACTGTACCCCAGCAAACCAAGGCAAATACTACAAGTGGTCCTTCCCCAGGAGCCCCTCTGCTGTaGGACCCAGACTCTTGTCCC +
Preference number: 4 (lower is better)
Translates to: TSTVPQQTKANTTSGPSPGAPLL*DPDSCP
Trigger: GGGACAAGAGTCTGGGTCGCACAGCAGAGGGGCTCC...TGGGGAAGGACCACTTGTAGTATTTGCCTTGGTTTGCTGGGGTACAGTGGATGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp TCCACTGTACCCCAGCAAACCAAGGCAAATACTACAAGTGGTCCTTCCCCAGGGCCCTGTGGGATTCCCTaGTTCCAGTGGGAGCTGCTT +
Preference number: 4 (lower is better)
Translates to: STVPQQTKANTTSGPSPGPCGIP*FQWELL
Trigger: AAGCAGCTCCCACTGGAACCAGGGAATCCCACAGGG...CCCTGGGGAAGGACCACTTGTAGTATTTGCCTTGGTTTGCTGGGGTACAGTGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CCA 90 bp ACTGAGGGGCAGTCCTGCTTTCAGCCAAAGACATCACCAGTCTGTAAGGTGCGGGTGAGATCTGCCCTGTaGGATTCCCTGGTTCCAGTG +
Preference number: 4 (lower is better)
Translates to: TEGQSCFQPKTSPVCKVRVRSAL*DSLVPV
Trigger: CACTGGAACCAGGGAATCCCACAGGGCAGATCTCAC...CCGCACCTTACAGACTGGTGATGTCTTTGGCTGAAAGCAGGACTGCCCCTCAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CCA 90 bp TCACCAGTCTGTAAGGTGCGGATTAAAAACAAAGAGGAACTCTGCCCCCAGGGGTGGGGCCCCTGCTCTTaGCTTCTGAGGACGGGCATT +
Preference number: 4 (lower is better)
Translates to: SPVCKVRIKNKEELCPQGWGPCS*LLRTGI
Trigger: AATGCCCGTCCTCAGAAGCCAAGAGCAGGGGCCCCA...CCCCTGGGGGCAGAGTTCCTCTTTGTTTTTAATCCGCACCTTACAGACTGGTGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 22 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CCA 90 bp ACTGAGGGGCAGTCCTGCTTTCAGCCAAAGACATCACCAGTCTGTAAGGTGCGGCACTGTGGTGGGGGATaGTTGGCTGCTTCTTCGAGA +
Preference number: 4 (lower is better)
Translates to: TEGQSCFQPKTSPVCKVRHCGGG*LAASSR
Trigger: TCTCGAAGAAGCAGCCAACCATCCCCCACCACAGTG...CCGCACCTTACAGACTGGTGATGTCTTTGGCTGAAAGCAGGACTGCCCCTCAGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CCA 90 bp CTTCCCCAGGGGGAAGACCAGAGAGGCTATGAGTGTGTGTGTGTGTTGTGTATGGGGAGTTCCAGAGCGTaGCAGAGGACTTTGAGAGCC +
Preference number: 4 (lower is better)
Translates to: LPQGEDQRGYECVCVLCMGSSRA*QRTLRA
Trigger: GGCTCTCAAAGTCCTCTGCCACGCTCTGGAACTCCC...CATACACAACACACACACACACTCATAGCCTCTCTGGTCTTCCCCCTGGGGAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000122129.8
CDS-3UTR CCA 90 bp TCCACTGTACCCCAGCAAACCAAGGCAAATACTACAAGTGGTCCTTCCCCAGGGCCAGGAAGGAGAGGGTaGGCGTCATCAGACGATCCA +
Preference number: 4 (lower is better)
Translates to: STVPQQTKANTTSGPSPGPGRRG*ASSDDP
Trigger: TGGATCGTCTGATGACGCCCACCCTCTCCTTCCTGG...CCCTGGGGAAGGACCACTTGTAGTATTTGCCTTGGTTTGCTGGGGTACAGTGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp TCACCAGTCTGTAAGGTGCGGATTAAAAACAAAGAGGAACTCTGCCCCCAGGGGGACGCTGGCAGCGACTaGCGCTTCTTGAGGTTCCGT +
Preference number: 4 (lower is better)
Translates to: SPVCKVRIKNKEELCPQGDAGSD*RFLRFR
Trigger: ACGGAACCTCAAGAAGCGCCAGTCGCTGCCAGCGTC...CCCCTGGGGGCAGAGTTCCTCTTTGTTTTTAATCCGCACCTTACAGACTGGTGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp AGGGGCAGTCCTGCTTTCAGCCAAAGACATCACCAGTCTGTAAGGTGCGGATTAGACGCTGGCAGCGACTaGCGCTTCTTGAGGTTCCGT +
Preference number: 4 (lower is better)
Translates to: RGSPAFSQRHHQSVRCGLDAGSD*RFLRFR
Trigger: ACGGAACCTCAAGAAGCGCCAGTCGCTGCCAGCGTC...TAATCCGCACCTTACAGACTGGTGATGTCTTTGGCTGAAAGCAGGACTGCCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp TCCACTGTACCCCAGCAAACCAAGGCAAATACTACAAGTGGTCCTTCCCCAGGGTGTAGAGGGAGAGGATaGCCGGGCCTTGGACTTAGG +
Preference number: 4 (lower is better)
Translates to: STVPQQTKANTTSGPSPGCRGRG*PGLGLR
Trigger: CCTAAGTCCAAGGCCCGGCCATCCTCTCCCTCTACA...CCCTGGGGAAGGACCACTTGTAGTATTTGCCTTGGTTTGCTGGGGTACAGTGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp CTTCCCCAGGGGGAAGACCAGAGAGGCTATGAGTGTGTGTGTGTGTTGTGTATGTGTAGAGGGAGAGGATaGCCGGGCCTTGGACTTAGG +
Preference number: 4 (lower is better)
Translates to: LPQGEDQRGYECVCVLCMCRGRG*PGLGLR
Trigger: CCTAAGTCCAAGGCCCGGCCATCCTCTCCCTCTACA...CATACACAACACACACACACACTCATAGCCTCTCTGGTCTTCCCCCTGGGGAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp GCTATGAGTGTGTGTGTGTGTTGTGTATGGGGAAGATGGGTGTCCGAGCGTGTACTTCCTCTCGGTCTGTaGTGCCCGCCATGGGTTTGC +
Preference number: 4 (lower is better)
Translates to: AMSVCVCCVWGRWVSERVLPLGL*CPPWVC
Trigger: GCAAACCCATGGCGGGCACCACAGACCGAGAGGAAG...TACACGCTCGGACACCCATCTTCCCCATACACAACACACACACACACTCATAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp AGGGGCAGTCCTGCTTTCAGCCAAAGACATCACCAGTCTGTAAGGTGCGGATTACTTCCTCTCGGTCTGTaGTGCCCGCCATGGGTTTGC +
Preference number: 4 (lower is better)
Translates to: RGSPAFSQRHHQSVRCGLLPLGL*CPPWVC
Trigger: GCAAACCCATGGCGGGCACCACAGACCGAGAGGAAG...TAATCCGCACCTTACAGACTGGTGATGTCTTTGGCTGAAAGCAGGACTGCCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp TCACCAGTCTGTAAGGTGCGGATTAAAAACAAAGAGGAACTCTGCCCCCAGGGGCTTCCTCTCGGTCTGTaGTGCCCGCCATGGGTTTGC +
Preference number: 4 (lower is better)
Translates to: SPVCKVRIKNKEELCPQGLPLGL*CPPWVC
Trigger: GCAAACCCATGGCGGGCACCACAGACCGAGAGGAAG...CCCCTGGGGGCAGAGTTCCTCTTTGTTTTTAATCCGCACCTTACAGACTGGTGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp GCTATGAGTGTGTGTGTGTGTTGTGTATGGGGAAGATGGGTGTCCGAGCGTGTATGCTTTTCCCGCTCCTaGCGCTGGCGCTCAGCTTCT +
Preference number: 4 (lower is better)
Translates to: AMSVCVCCVWGRWVSERVCFSRS*RWRSAS
Trigger: AGAAGCTGAGCGCCAGCGCCAGGAGCGGGAAAAGCA...TACACGCTCGGACACCCATCTTCCCCATACACAACACACACACACACTCATAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp AGATGTAATAACACTGATTCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAATGCTTTTCCCGCTCCTaGCGCTGGCGCTCAGCTTCT +
Preference number: 4 (lower is better)
Translates to: RCNNTDSRRGQGASPLKQCFSRS*RWRSAS
Trigger: AGAAGCTGAGCGCCAGCGCCAGGAGCGGGAAAAGCA...TTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGAATCAGTGTTATTACATCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp TTCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCTTGCATCCTGCTTCTTaGTTTCGGCGGCTTCTGATT +
Preference number: 4 (lower is better)
Translates to: FQARTGGITPEATSIVWPLHPAS*FRRLLI
Trigger: AATCAGAAGCCGCCGAAACCAAGAAGCAGGATGCAA...GGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp AGGGGCAGTCCTGCTTTCAGCCAAAGACATCACCAGTCTGTAAGGTGCGGATTACCCAGCGGTTCCCTTTaGGGAGAAGCCGTTCTCCTG +
Preference number: 4 (lower is better)
Translates to: RGSPAFSQRHHQSVRCGLPSGSL*GEAVLL
Trigger: CAGGAGAACGGCTTCTCCCCAAAGGGAACCGCTGGG...TAATCCGCACCTTACAGACTGGTGATGTCTTTGGCTGAAAGCAGGACTGCCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR TCA 90 bp GTGCCCCTCCATTCCCAGACCTGGGTTCCCCCTCGGTTACAGTTAAATAGAGGATGCAGGGATCTGTGTTaGGGATTGCTCCTTCTGAGG +
Preference number: 4 (lower is better)
Translates to: VPLHSQTWVPPRLQLNRGCRDLC*GLLLLR
Trigger: CCTCAGAAGGAGCAATCCTCAACACAGATCCCTGCA...TCCTCTATTTAACTGTAACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR TCA 90 bp CGAGCGTGTAAGCACACGGATGTACTGAGGGGCAGTCCTGCTTTCAGCCAAAGATGCAGGGATCTGTGTTaGGGATTGCTCCTTCTGAGG +
Preference number: 4 (lower is better)
Translates to: RACKHTDVLRGSPAFSQRCRDLC*GLLLLR
Trigger: CCTCAGAAGGAGCAATCCTCAACACAGATCCCTGCA...TCTTTGGCTGAAAGCAGGACTGCCCCTCAGTACATCCGTGTGCTTACACGCTCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp TCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCGCTTGTGTCTCTCTCCTaGCTTCTTTACATCTTGCTT +
Preference number: 4 (lower is better)
Translates to: SRRGQGASPLKQPVLCGPLVSLS*LLYILL
Trigger: AAGCAAGATGTAAAGAAGGCAGGAGAGAGACACAAG...CGGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR GCA 90 bp ACATCCACTGTACCCCAGCAAACCAAGGCAAATACTACAAGTGGTCCTTCCCCACCGACACGGAGCACCTaGTCCCACTGGTCTTACGTC +
Preference number: 4 (lower is better)
Translates to: TSTVPQQTKANTTSGPSPPTRST*SHWSYV
Trigger: GACGTAAGACCAGTGGGAGCAGGTGCTCCGTGTCGG...TGGGGAAGGACCACTTGTAGTATTTGCCTTGGTTTGCTGGGGTACAGTGGATGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000122129.8
CDS-3UTR GCA 90 bp CTTCCCCAGGGGGAAGACCAGAGAGGCTATGAGTGTGTGTGTGTGTTGTGTATGTCCCATGCGCTCAGCTaGAGGCTGCGATTTCTACTG +
Preference number: 4 (lower is better)
Translates to: LPQGEDQRGYECVCVLCMSHALS*RLRFLL
Trigger: CAGTAGAAATCGCAGCCTGCAGCTGAGCGCATGGGA...CATACACAACACACACACACACTCATAGCCTCTCTGGTCTTCCCCCTGGGGAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000122129.8
CDS-3UTR GCA 90 bp CTTCCCCAGGGGGAAGACCAGAGAGGCTATGAGTGTGTGTGTGTGTTGTGTATGGACGATCCACAATGCTaGTCTCCCATGCGCTCAGCT +
Preference number: 4 (lower is better)
Translates to: LPQGEDQRGYECVCVLCMDDPQC*SPMRSA
Trigger: AGCTGAGCGCATGGGAGAGCAGCATTGTGGATCGTC...CATACACAACACACACACACACTCATAGCCTCTCTGGTCTTCCCCCTGGGGAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp CAAGCTATTTACAGTATTCACATCCACTGTACCCCAGCAAACCAAGGCAAATACGTCTCCCAGGGCCGCTaGCCCTACCCTGGTCCCTGC +
Preference number: 4 (lower is better)
Translates to: QAIYSIHIHCTPANQGKYVSQGR*PYPGPC
Trigger: GCAGGGACCAGGGTAGGGGCAGCGGCCCTGGGAGAC...GTATTTGCCTTGGTTTGCTGGGGTACAGTGGATGTGAATACTGTAAATAGCTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp TTGATCAGATGTAATAACACTGATTCCAGGCGAGGACAGGGGGCATCACCCCTGGCTGGGGCTCTCTTTTaGCTCCTCCTTCCTCCGAAC +
Preference number: 4 (lower is better)
Translates to: LIRCNNTDSRRGQGASPLAGALF*LLLPPN
Trigger: GTTCGGAGGAAGGAGGAGGCAAAAGAGAGCCCCAGC...CAGGGGTGATGCCCCCTGTCCTCGCCTGGAATCAGTGTTATTACATCTGATCAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp GTGCCCCTCCATTCCCAGACCTGGGTTCCCCCTCGGTTACAGTTAAATAGAGGATTGTCCCTTTCAGCCTaGAGCTTCCGCTCCTGTTCT +
Preference number: 4 (lower is better)
Translates to: VPLHSQTWVPPRLQLNRGLSLSA*SFRSCS
Trigger: AGAACAGGAGCGGAAGCTGCAGGCTGAAAGGGACAA...TCCTCTATTTAACTGTAACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp GTGCCCCTCCATTCCCAGACCTGGGTTCCCCCTCGGTTACAGTTAAATAGAGGAGTCTCCTTTGCATCCTaGTTCTTGGTTTCGGCGGCT +
Preference number: 4 (lower is better)
Translates to: VPLHSQTWVPPRLQLNRGVSFAS*FLVSAA
Trigger: AGCCGCCGAAACCAAGAAGCAGGATGCAAAGGAGAC...TCCTCTATTTAACTGTAACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp CGAGCGTGTAAGCACACGGATGTACTGAGGGGCAGTCCTGCTTTCAGCCAAAGAGCCGGAATTGTTAGCTaGGGTCTCCTTTGCATCCTG +
Preference number: 4 (lower is better)
Translates to: RACKHTDVLRGSPAFSQRAGIVS*GLLCIL
Trigger: CAGGATGCAAAGGAGACCGCAGCTAACAATTCCGGC...TCTTTGGCTGAAAGCAGGACTGCCCCTCAGTACATCCGTGTGCTTACACGCTCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp AGGGGCAGTCCTGCTTTCAGCCAAAGACATCACCAGTCTGTAAGGTGCGGATTAACCCTGGCATCTCCTTaGTTGGCAGGCTCCACTGTG +
Preference number: 4 (lower is better)
Translates to: RGSPAFSQRHHQSVRCGLTLASP*LAGSTV
Trigger: CACAGTGGAGCCTGCCAAGCAAGGAGATGCCAGGGT...TAATCCGCACCTTACAGACTGGTGATGTCTTTGGCTGAAAGCAGGACTGCCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp TCACCAGTCTGTAAGGTGCGGATTAAAAACAAAGAGGAACTCTGCCCCCAGGGGACCCTGGCATCTCCTTaGTTGGCAGGCTCCACTGTG +
Preference number: 4 (lower is better)
Translates to: SPVCKVRIKNKEELCPQGTLASP*LAGSTV
Trigger: CACAGTGGAGCCTGCCAAGCAAGGAGATGCCAGGGT...CCCCTGGGGGCAGAGTTCCTCTTTGTTTTTAATCCGCACCTTACAGACTGGTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp ACATCCACTGTACCCCAGCAAACCAAGGCAAATACTACAAGTGGTCCTTCCCCATGCGCTGGGAGAGGCTaGAGGCCATTTACCAGGGAC +
Preference number: 4 (lower is better)
Translates to: TSTVPQQTKANTTSGPSPCAGRG*RPFTRD
Trigger: GTCCCTGGTAAATGGCCTGCAGCCTCTCCCAGCGCA...TGGGGAAGGACCACTTGTAGTATTTGCCTTGGTTTGCTGGGGTACAGTGGATGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp CGAGCGTGTAAGCACACGGATGTACTGAGGGGCAGTCCTGCTTTCAGCCAAAGACTTGAGGAAGGCTTCTaGCTCTGCAAATGGGAGGAG +
Preference number: 4 (lower is better)
Translates to: RACKHTDVLRGSPAFSQRLEEGF*LCKWEE
Trigger: CTCCTCCCATTTGCAGAGGCAGAAGCCTTCCTCAAG...TCTTTGGCTGAAAGCAGGACTGCCCCTCAGTACATCCGTGTGCTTACACGCTCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp AGATGTAATAACACTGATTCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCCTGTGGGATTCCCTaGTTCCAGTGGGAGCTGCTT +
Preference number: 4 (lower is better)
Translates to: RCNNTDSRRGQGASPLKQPCGIP*FQWELL
Trigger: AAGCAGCTCCCACTGGAACCAGGGAATCCCACAGGG...TTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGAATCAGTGTTATTACATCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CCA 90 bp TCCACTGTACCCCAGCAAACCAAGGCAAATACTACAAGTGGTCCTTCCCCAGGGGTGAGATCTGCCCTGTaGGATTCCCTGGTTCCAGTG +
Preference number: 4 (lower is better)
Translates to: STVPQQTKANTTSGPSPGVRSAL*DSLVPV
Trigger: CACTGGAACCAGGGAATCCCACAGGGCAGATCTCAC...CCCTGGGGAAGGACCACTTGTAGTATTTGCCTTGGTTTGCTGGGGTACAGTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CCA 90 bp GCTATGAGTGTGTGTGTGTGTTGTGTATGGGGAAGATGGGTGTCCGAGCGTGTAGTGGTGGGGGATGGTTaGCTGCTTCTTCGAGAAGGC +
Preference number: 4 (lower is better)
Translates to: AMSVCVCCVWGRWVSERVVVGDG*LLLREG
Trigger: GCCTTCTCGAAGAAGCAGCCAACCATCCCCCACCAC...TACACGCTCGGACACCCATCTTCCCCATACACAACACACACACACACTCATAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CCA 90 bp TGTAATAACACTGATTCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCACACTGTGGTGGGGGATaGTTGGCTGCTTCTTCGAGA +
Preference number: 4 (lower is better)
Translates to: CNNTDSRRGQGASPLKQPHCGGG*LAASSR
Trigger: TCTCGAAGAAGCAGCCAACCATCCCCCACCACAGTG...TGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGAATCAGTGTTATTACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CCA 90 bp GTGCCCCTCCATTCCCAGACCTGGGTTCCCCCTCGGTTACAGTTAAATAGAGGACTTCTCGGCGCTCTTTaGCAAGCTTGTGTCTCTCTC +
Preference number: 4 (lower is better)
Translates to: VPLHSQTWVPPRLQLNRGLLGAL*QACVSL
Trigger: GAGAGAGACACAAGCTTGCCAAAGAGCGCCGAGAAG...TCCTCTATTTAACTGTAACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CCA 90 bp AGGGGCAGTCCTGCTTTCAGCCAAAGACATCACCAGTCTGTAAGGTGCGGATTAGGGAGTTCCAGAGCGTaGCAGAGGACTTTGAGAGCC +
Preference number: 4 (lower is better)
Translates to: RGSPAFSQRHHQSVRCGLGSSRA*QRTLRA
Trigger: GGCTCTCAAAGTCCTCTGCCACGCTCTGGAACTCCC...TAATCCGCACCTTACAGACTGGTGATGTCTTTGGCTGAAAGCAGGACTGCCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000122129.8
CDS-3UTR CCA 90 bp GCTATGAGTGTGTGTGTGTGTTGTGTATGGGGAAGATGGGTGTCCGAGCGTGTAGGCTGCGATTTCTACTaGGGGAGTTCCAGAGCGTGG +
Preference number: 4 (lower is better)
Translates to: AMSVCVCCVWGRWVSERVGCDFY*GSSRAW
Trigger: CCACGCTCTGGAACTCCCCCAGTAGAAATCGCAGCC...TACACGCTCGGACACCCATCTTCCCCATACACAACACACACACACACTCATAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000122129.8
CDS-3UTR CCA 90 bp AGGGGCAGTCCTGCTTTCAGCCAAAGACATCACCAGTCTGTAAGGTGCGGATTACCAGGAAGGAGAGGGTaGGCGTCATCAGACGATCCA +
Preference number: 4 (lower is better)
Translates to: RGSPAFSQRHHQSVRCGLPGRRG*ASSDDP
Trigger: TGGATCGTCTGATGACGCCCACCCTCTCCTTCCTGG...TAATCCGCACCTTACAGACTGGTGATGTCTTTGGCTGAAAGCAGGACTGCCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp CTTCCACATAGCACAAGCTATTTACAGTATTCACATCCACTGTACCCCAGCAAACTTCTGAGGCTGGGCTaGGGTGGGCGAGGGCACCGG +
Preference number: 4 (lower is better)
Translates to: LPHSTSYLQYSHPLYPSKLLRLG*GGRGHR
Trigger: CCGGTGCCCTCGCCCACCCCAGCCCAGCCTCAGAAG...TTTGCTGGGGTACAGTGGATGTGAATACTGTAAATAGCTTGTGCTATGTGGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp TGTGTGTTGTGTATGGGGAAGATGGGTGTCCGAGCGTGTAAGCACACGGATGTATGGCATCTCCTTGCTTaGCAGGCTCCACTGTGGCTC +
Preference number: 4 (lower is better)
Translates to: CVLCMGKMGVRACKHTDVWHLLA*QAPLWL
Trigger: GAGCCACAGTGGAGCCTGCCAAGCAAGGAGATGCCA...TACATCCGTGTGCTTACACGCTCGGACACCCATCTTCCCCATACACAACACACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp GTGCCCCTCCATTCCCAGACCTGGGTTCCCCCTCGGTTACAGTTAAATAGAGGAATTTACCAGGGACCCTaGCATCTCCTTGCTTGGCAG +
Preference number: 4 (lower is better)
Translates to: VPLHSQTWVPPRLQLNRGIYQGP*HLLAWQ
Trigger: CTGCCAAGCAAGGAGATGCCAGGGTCCCTGGTAAAT...TCCTCTATTTAACTGTAACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp ACATCCACTGTACCCCAGCAAACCAAGGCAAATACTACAAGTGGTCCTTCCCCAGTTCTCCTGGTGCGCTaGGAGAGGCTGCAGGCCATT +
Preference number: 4 (lower is better)
Translates to: TSTVPQQTKANTTSGPSPVLLVR*ERLQAI
Trigger: AATGGCCTGCAGCCTCTCCCAGCGCACCAGGAGAAC...TGGGGAAGGACCACTTGTAGTATTTGCCTTGGTTTGCTGGGGTACAGTGGATGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
3UTR CAA 72 bp GGGGAAGACCAGAGAGGCTATGAGTGTGTGTGTGTGTaGTGTATGGGGAAGATGGGTGTCCGAGCGTGTAAG +
Preference number: 4 (lower is better)
Translates to: GEDQRGYECVCV*CMGKMGVRACK
Trigger: CTTACACGCTCGGACACCCATCTTCCCCATACACAACACACACACACACTCATAGCCTCTCTGGTCTTCCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR TCA 90 bp TTGATCAGATGTAATAACACTGATTCCAGGCGAGGACAGGGGGCATCACCCCTGCCACGTCTTCTTCACTaGCCGCTGGATTGCTGCTTC +
Preference number: 4 (lower is better)
Translates to: LIRCNNTDSRRGQGASPLPRLLH*PLDCCF
Trigger: GAAGCAGCAATCCAGCGGTCAGTGAAGAAGACGTGG...CAGGGGTGATGCCCCCTGTCCTCGCCTGGAATCAGTGTTATTACATCTGATCAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR GCA 90 bp GCTATGAGTGTGTGTGTGTGTTGTGTATGGGGAAGATGGGTGTCCGAGCGTGTACTTCTCCAACCACACTaGCTTCTTGGCCGCCAGGTA +
Preference number: 4 (lower is better)
Translates to: AMSVCVCCVWGRWVSERVLLQPH*LLGRQV
Trigger: TACCTGGCGGCCAAGAAGGCAGTGTGGTTGGAGAAG...TACACGCTCGGACACCCATCTTCCCCATACACAACACACACACACACTCATAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR GCA 90 bp CGCCTCTTCCACATAGCACAAGCTATTTACAGTATTCACATCCACTGTACCCCACGGCGCTCCTGGAGTTaGTTTTCCCGGAGCGCCTTG +
Preference number: 4 (lower is better)
Translates to: RLFHIAQAIYSIHIHCTPRRSWS*FSRSAL
Trigger: CAAGGCGCTCCGGGAAAAGCAACTCCAGGAGCGCCG...TGGGGTACAGTGGATGTGAATACTGTAAATAGCTTGTGCTATGTGGAAGAGGCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR GCA 90 bp TTTACAGTATTCACATCCACTGTACCCCAGCAAACCAAGGCAAATACTACAAGTCCAGGGGAGCTGTGGTaGAGGGCCCCTGCCCAGGAC +
Preference number: 4 (lower is better)
Translates to: FTVFTSTVPQQTKANTTSPGELW*RAPAQD
Trigger: GTCCTGGGCAGGGGCCCTGCACCACAGCTCCCCTGG...ACTTGTAGTATTTGCCTTGGTTTGCTGGGGTACAGTGGATGTGAATACTGTAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp TTGATCAGATGTAATAACACTGATTCCAGGCGAGGACAGGGGGCATCACCCCTGTTTGGGCAGGTTTACTaGCGACACGGAGCACCTGCT +
Preference number: 4 (lower is better)
Translates to: LIRCNNTDSRRGQGASPLFGQVY*RHGAPA
Trigger: AGCAGGTGCTCCGTGTCGGCAGTAAACCTGCCCAAA...CAGGGGTGATGCCCCCTGTCCTCGCCTGGAATCAGTGTTATTACATCTGATCAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000122129.8
CDS-3UTR GCA 90 bp TCCACTGTACCCCAGCAAACCAAGGCAAATACTACAAGTGGTCCTTCCCCAGGGTCAGACGATCCACAATaGTGCTCTCCCATGCGCTCA +
Preference number: 4 (lower is better)
Translates to: STVPQQTKANTTSGPSPGSDDPQ*CSPMRS
Trigger: TGAGCGCATGGGAGAGCAGCATTGTGGATCGTCTGA...CCCTGGGGAAGGACCACTTGTAGTATTTGCCTTGGTTTGCTGGGGTACAGTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp TTGATCAGATGTAATAACACTGATTCCAGGCGAGGACAGGGGGCATCACCCCTGTCCCATGCGCTCAGCTaGAGGCTGCGATTGGTCTTA +
Preference number: 4 (lower is better)
Translates to: LIRCNNTDSRRGQGASPLSHALS*RLRLVL
Trigger: TAAGACCAATCGCAGCCTGCAGCTGAGCGCATGGGA...CAGGGGTGATGCCCCCTGTCCTCGCCTGGAATCAGTGTTATTACATCTGATCAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp TGTGTGTTGTGTATGGGGAAGATGGGTGTCCGAGCGTGTAAGCACACGGATGTAGACGGTCTTGGCTCTTaGGGGATCCTGGCTAACACA +
Preference number: 4 (lower is better)
Translates to: CVLCMGKMGVRACKHTDVDGLGS*GILANT
Trigger: TGTGTTAGCCAGGATCCCCCAAGAGCCAAGACCGTC...TACATCCGTGTGCTTACACGCTCGGACACCCATCTTCCCCATACACAACACACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CCA 90 bp AGATGTAATAACACTGATTCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAAGACGGTCTTGGCTCTTaGGGGATCCTGGCTAACACA +
Preference number: 4 (lower is better)
Translates to: RCNNTDSRRGQGASPLKQDGLGS*GILANT
Trigger: TGTGTTAGCCAGGATCCCCCAAGAGCCAAGACCGTC...TTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGAATCAGTGTTATTACATCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CCA 90 bp ACATCCACTGTACCCCAGCAAACCAAGGCAAATACTACAAGTGGTCCTTCCCCAGTGGTGGGGGATGGTTaGCTGCTTCTTCGAGAAGGC +
Preference number: 4 (lower is better)
Translates to: TSTVPQQTKANTTSGPSPVVGDG*LLLREG
Trigger: GCCTTCTCGAAGAAGCAGCCAACCATCCCCCACCAC...TGGGGAAGGACCACTTGTAGTATTTGCCTTGGTTTGCTGGGGTACAGTGGATGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CCA 90 bp ACTGAGGGGCAGTCCTGCTTTCAGCCAAAGACATCACCAGTCTGTAAGGTGCGGTCTTTACATCTTGCTTaGCAGGAGGGCTGTCAGAGG +
Preference number: 4 (lower is better)
Translates to: TEGQSCFQPKTSPVCKVRSLHLA*QEGCQR
Trigger: CCTCTGACAGCCCTCCTGCCAAGCAAGATGTAAAGA...CCGCACCTTACAGACTGGTGATGTCTTTGGCTGAAAGCAGGACTGCCCCTCAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CCA 90 bp TTGATCAGATGTAATAACACTGATTCCAGGCGAGGACAGGGGGCATCACCCCTGAGGTCTGATAGACGCTaGCAGCGACTGGCGCTTCTT +
Preference number: 4 (lower is better)
Translates to: LIRCNNTDSRRGQGASPLRSDRR*QRLALL
Trigger: AAGAAGCGCCAGTCGCTGCCAGCGTCTATCAGACCT...CAGGGGTGATGCCCCCTGTCCTCGCCTGGAATCAGTGTTATTACATCTGATCAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp CGCCTCTTCCACATAGCACAAGCTATTTACAGTATTCACATCCACTGTACCCCACTCCACTGTGGCTCCTaGGGGGCCAGCTCCTCTTTC +
Preference number: 4 (lower is better)
Translates to: RLFHIAQAIYSIHIHCTPLHCGS*GASSSF
Trigger: GAAAGAGGAGCTGGCCCCCCAGGAGCCACAGTGGAG...TGGGGTACAGTGGATGTGAATACTGTAAATAGCTTGTGCTATGTGGAAGAGGCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp TGTAATAACACTGATTCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCAATTTACCAGGGACCCTaGCATCTCCTTGCTTGGCAG +
Preference number: 4 (lower is better)
Translates to: CNNTDSRRGQGASPLKQPIYQGP*HLLAWQ
Trigger: CTGCCAAGCAAGGAGATGCCAGGGTCCCTGGTAAAT...TGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGAATCAGTGTTATTACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp CTTCCCCAGGGGGAAGACCAGAGAGGCTATGAGTGTGTGTGTGTGTTGTGTATGATTTACCAGGGACCCTaGCATCTCCTTGCTTGGCAG +
Preference number: 4 (lower is better)
Translates to: LPQGEDQRGYECVCVLCMIYQGP*HLLAWQ
Trigger: CTGCCAAGCAAGGAGATGCCAGGGTCCCTGGTAAAT...CATACACAACACACACACACACTCATAGCCTCTCTGGTCTTCCCCCTGGGGAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR TCA 90 bp ACATCCACTGTACCCCAGCAAACCAAGGCAAATACTACAAGTGGTCCTTCCCCACCACGTCTTCTTCACTaGCCGCTGGATTGCTGCTTC +
Preference number: 4 (lower is better)
Translates to: TSTVPQQTKANTTSGPSPPRLLH*PLDCCF
Trigger: GAAGCAGCAATCCAGCGGTCAGTGAAGAAGACGTGG...TGGGGAAGGACCACTTGTAGTATTTGCCTTGGTTTGCTGGGGTACAGTGGATGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR TCA 90 bp TGTAATAACACTGATTCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCACGTGGCAGAGGACTTTaGGAGCCGCTTGTTGATTAT +
Preference number: 4 (lower is better)
Translates to: CNNTDSRRGQGASPLKQPRGRGL*EPLVDY
Trigger: ATAATCAACAAGCGGCTCTCAAAGTCCTCTGCCACG...TGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGAATCAGTGTTATTACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000122129.8
CDS-3UTR GCA 90 bp TCACCAGTCTGTAAGGTGCGGATTAAAAACAAAGAGGAACTCTGCCCCCAGGGGTTTTTCTCAAGCTTCTaGCTCTGCCGCTCCTCCAGG +
Preference number: 4 (lower is better)
Translates to: SPVCKVRIKNKEELCPQGFFSSF*LCRSSR
Trigger: CCTGGAGGAGCGGCAGAGGCAGAAGCTTGAGAAAAA...CCCCTGGGGGCAGAGTTCCTCTTTGTTTTTAATCCGCACCTTACAGACTGGTGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR GCA 90 bp AGATGTAATAACACTGATTCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAATTGTCCCTTTCAGCCTaGAGCTTCCGCTCCTGTTCT +
Preference number: 4 (lower is better)
Translates to: RCNNTDSRRGQGASPLKQLSLSA*SFRSCS
Trigger: AGAACAGGAGCGGAAGCTGCAGGCTGAAAGGGACAA...TTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGAATCAGTGTTATTACATCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp TGTGTGTTGTGTATGGGGAAGATGGGTGTCCGAGCGTGTAAGCACACGGATGTACTTGAGGAAGGCTTCTaGCTCTGCAAATGGGAGGAG +
Preference number: 4 (lower is better)
Translates to: CVLCMGKMGVRACKHTDVLEEGF*LCKWEE
Trigger: CTCCTCCCATTTGCAGAGGCAGAAGCCTTCCTCAAG...TACATCCGTGTGCTTACACGCTCGGACACCCATCTTCCCCATACACAACACACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp TTGATCAGATGTAATAACACTGATTCCAGGCGAGGACAGGGGGCATCACCCCTGCTTCTCGGCGCTCTTTaGCAAGCTTGTGTCTCTCTC +
Preference number: 4 (lower is better)
Translates to: LIRCNNTDSRRGQGASPLLLGAL*QACVSL
Trigger: GAGAGAGACACAAGCTTGCCAAAGAGCGCCGAGAAG...CAGGGGTGATGCCCCCTGTCCTCGCCTGGAATCAGTGTTATTACATCTGATCAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CCA 90 bp AGATGTAATAACACTGATTCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAATTTCCCGGAGCGCCTTaGCTTTTTCCTCCTTCTCCA +
Preference number: 4 (lower is better)
Translates to: RCNNTDSRRGQGASPLKQFPGAP*LFPPSP
Trigger: TGGAGAAGGAGGAAAAAGCCAAGGCGCTCCGGGAAA...TTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGAATCAGTGTTATTACATCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CCA 90 bp TCACCAGTCTGTAAGGTGCGGATTAAAAACAAAGAGGAACTCTGCCCCCAGGGGTTTCCCGGAGCGCCTTaGCTTTTTCCTCCTTCTCCA +
Preference number: 4 (lower is better)
Translates to: SPVCKVRIKNKEELCPQGFPGAP*LFPPSP
Trigger: TGGAGAAGGAGGAAAAAGCCAAGGCGCTCCGGGAAA...CCCCTGGGGGCAGAGTTCCTCTTTGTTTTTAATCCGCACCTTACAGACTGGTGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CCA 90 bp CGCCTCTTCCACATAGCACAAGCTATTTACAGTATTCACATCCACTGTACCCCAGACGCTGGCAGCGACTaGCGCTTCTTGAGGTTCCGT +
Preference number: 4 (lower is better)
Translates to: RLFHIAQAIYSIHIHCTPDAGSD*RFLRFR
Trigger: ACGGAACCTCAAGAAGCGCCAGTCGCTGCCAGCGTC...TGGGGTACAGTGGATGTGAATACTGTAAATAGCTTGTGCTATGTGGAAGAGGCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp CTTCCACATAGCACAAGCTATTTACAGTATTCACATCCACTGTACCCCAGCAAACAGCCAGGAGCCGCGTaGCTTCCTCTCGGTCTGTGG +
Preference number: 4 (lower is better)
Translates to: LPHSTSYLQYSHPLYPSKQPGAA*LPLGLW
Trigger: CCACAGACCGAGAGGAAGCCACGCGGCTCCTGGCTG...TTTGCTGGGGTACAGTGGATGTGAATACTGTAAATAGCTTGTGCTATGTGGAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp CAAGCTATTTACAGTATTCACATCCACTGTACCCCAGCAAACCAAGGCAAATACCAGCCAGGAGCCGCGTaGCTTCCTCTCGGTCTGTGG +
Preference number: 4 (lower is better)
Translates to: QAIYSIHIHCTPANQGKYQPGAA*LPLGLW
Trigger: CCACAGACCGAGAGGAAGCCACGCGGCTCCTGGCTG...GTATTTGCCTTGGTTTGCTGGGGTACAGTGGATGTGAATACTGTAAATAGCTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp CGCCTCTTCCACATAGCACAAGCTATTTACAGTATTCACATCCACTGTACCCCAGTTCTCCTGGTGCGCTaGGAGAGGCTGCAGGCCATT +
Preference number: 4 (lower is better)
Translates to: RLFHIAQAIYSIHIHCTPVLLVR*ERLQAI
Trigger: AATGGCCTGCAGCCTCTCCCAGCGCACCAGGAGAAC...TGGGGTACAGTGGATGTGAATACTGTAAATAGCTTGTGCTATGTGGAAGAGGCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp CGCCTCTTCCACATAGCACAAGCTATTTACAGTATTCACATCCACTGTACCCCACCCAGCGGTTCCCTTTaGGGAGAAGCCGTTCTCCTG +
Preference number: 4 (lower is better)
Translates to: RLFHIAQAIYSIHIHCTPPSGSL*GEAVLL
Trigger: CAGGAGAACGGCTTCTCCCCAAAGGGAACCGCTGGG...TGGGGTACAGTGGATGTGAATACTGTAAATAGCTTGTGCTATGTGGAAGAGGCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp TGTGTGTTGTGTATGGGGAAGATGGGTGTCCGAGCGTGTAAGCACACGGATGTAGCCTTCTTTACATCTTaGTTGGCAGGAGGGCTGTCA +
Preference number: 4 (lower is better)
Translates to: CVLCMGKMGVRACKHTDVAFFTS*LAGGLS
Trigger: TGACAGCCCTCCTGCCAAGCAAGATGTAAAGAAGGC...TACATCCGTGTGCTTACACGCTCGGACACCCATCTTCCCCATACACAACACACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR GCA 90 bp TTTACAGTATTCACATCCACTGTACCCCAGCAAACCAAGGCAAATACTACAAGTGCCTCCCGGGCCAGCTaGTCCTCTCGCATTCGCTTG +
Preference number: 4 (lower is better)
Translates to: FTVFTSTVPQQTKANTTSASRAS*SSRIRL
Trigger: CAAGCGAATGCGAGAGGAGCAGCTGGCCCGGGAGGC...ACTTGTAGTATTTGCCTTGGTTTGCTGGGGTACAGTGGATGTGAATACTGTAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp ACATCCACTGTACCCCAGCAAACCAAGGCAAATACTACAAGTGGTCCTTCCCCAGTCTCCTTTGCATCCTaGTTCTTGGTTTCGGCGGCT +
Preference number: 4 (lower is better)
Translates to: TSTVPQQTKANTTSGPSPVSFAS*FLVSAA
Trigger: AGCCGCCGAAACCAAGAAGCAGGATGCAAAGGAGAC...TGGGGAAGGACCACTTGTAGTATTTGCCTTGGTTTGCTGGGGTACAGTGGATGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp GCTATGAGTGTGTGTGTGTGTTGTGTATGGGGAAGATGGGTGTCCGAGCGTGTAAGCTGCGGTCTCCTTTaGATCCTGCTTCTTGGTTTC +
Preference number: 4 (lower is better)
Translates to: AMSVCVCCVWGRWVSERVSCGLL*ILLLGF
Trigger: GAAACCAAGAAGCAGGATGCAAAGGAGACCGCAGCT...TACACGCTCGGACACCCATCTTCCCCATACACAACACACACACACACTCATAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp TCACCAGTCTGTAAGGTGCGGATTAAAAACAAAGAGGAACTCTGCCCCCAGGGGAGCTGCGGTCTCCTTTaGATCCTGCTTCTTGGTTTC +
Preference number: 4 (lower is better)
Translates to: SPVCKVRIKNKEELCPQGSCGLL*ILLLGF
Trigger: GAAACCAAGAAGCAGGATGCAAAGGAGACCGCAGCT...CCCCTGGGGGCAGAGTTCCTCTTTGTTTTTAATCCGCACCTTACAGACTGGTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp AGATGTAATAACACTGATTCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAAAGCTGCGGTCTCCTTTaGATCCTGCTTCTTGGTTTC +
Preference number: 4 (lower is better)
Translates to: RCNNTDSRRGQGASPLKQSCGLL*ILLLGF
Trigger: GAAACCAAGAAGCAGGATGCAAAGGAGACCGCAGCT...TTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGAATCAGTGTTATTACATCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp AGATGTAATAACACTGATTCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAAATTCCCTGGTTCCAGTaGGAGCTGCTTAGGATTCGT +
Preference number: 4 (lower is better)
Translates to: RCNNTDSRRGQGASPLKQIPWFQ*ELLRIR
Trigger: ACGAATCCTAAGCAGCTCCCACTGGAACCAGGGAAT...TTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGAATCAGTGTTATTACATCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CCA 90 bp CAAGCTATTTACAGTATTCACATCCACTGTACCCCAGCAAACCAAGGCAAATACAGGGCTGTCAGAGGCTaGCACTGTGGTGGGGGATGG +
Preference number: 4 (lower is better)
Translates to: QAIYSIHIHCTPANQGKYRAVRG*HCGGGW
Trigger: CCATCCCCCACCACAGTGCCAGCCTCTGACAGCCCT...GTATTTGCCTTGGTTTGCTGGGGTACAGTGGATGTGAATACTGTAAATAGCTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CCA 90 bp CTTCCACATAGCACAAGCTATTTACAGTATTCACATCCACTGTACCCCAGCAAAGAGAAGCCGTTCTCCTaGTGCGCTGGGAGAGGCTGC +
Preference number: 4 (lower is better)
Translates to: LPHSTSYLQYSHPLYPSKEKPFS*CAGRGC
Trigger: GCAGCCTCTCCCAGCGCACCAGGAGAACGGCTTCTC...TTTGCTGGGGTACAGTGGATGTGAATACTGTAAATAGCTTGTGCTATGTGGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp TTTACAGTATTCACATCCACTGTACCCCAGCAAACCAAGGCAAATACTACAAGTCAGGACCAGCGCTGTTaGCGGATCTCAGCCCACGTC +
Preference number: 4 (lower is better)
Translates to: FTVFTSTVPQQTKANTTSQDQRC*RISAHV
Trigger: GACGTGGGCTGAGATCCGGCAACAGCGCTGGTCCTG...ACTTGTAGTATTTGCCTTGGTTTGCTGGGGTACAGTGGATGTGAATACTGTAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp CGCCTCTTCCACATAGCACAAGCTATTTACAGTATTCACATCCACTGTACCCCAGACGATCCACAATGCTaGTCTCCCATGCGCTCAGCT +
Preference number: 4 (lower is better)
Translates to: RLFHIAQAIYSIHIHCTPDDPQC*SPMRSA
Trigger: AGCTGAGCGCATGGGAGAGCAGCATTGTGGATCGTC...TGGGGTACAGTGGATGTGAATACTGTAAATAGCTTGTGCTATGTGGAAGAGGCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp CTTCCACATAGCACAAGCTATTTACAGTATTCACATCCACTGTACCCCAGCAAATTCTGCAGTCGCTCCTaGTCCTCCTGCTCAGCCTGC +
Preference number: 4 (lower is better)
Translates to: LPHSTSYLQYSHPLYPSKFCSRS*SSCSAC
Trigger: GCAGGCTGAGCAGGAGGAGCAGGAGCGACTGCAGAA...TTTGCTGGGGTACAGTGGATGTGAATACTGTAAATAGCTTGTGCTATGTGGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp CAAGCTATTTACAGTATTCACATCCACTGTACCCCAGCAAACCAAGGCAAATACGACGCTGGCAGCGACTaGCGCTTCTTGAGGTTCCGT +
Preference number: 4 (lower is better)
Translates to: QAIYSIHIHCTPANQGKYDAGSD*RFLRFR
Trigger: ACGGAACCTCAAGAAGCGCCAGTCGCTGCCAGCGTC...GTATTTGCCTTGGTTTGCTGGGGTACAGTGGATGTGAATACTGTAAATAGCTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp CAAGCTATTTACAGTATTCACATCCACTGTACCCCAGCAAACCAAGGCAAATACTGCTTTTCCCGCTCCTaGCGCTGGCGCTCAGCTTCT +
Preference number: 4 (lower is better)
Translates to: QAIYSIHIHCTPANQGKYCFSRS*RWRSAS
Trigger: AGAAGCTGAGCGCCAGCGCCAGGAGCGGGAAAAGCA...GTATTTGCCTTGGTTTGCTGGGGTACAGTGGATGTGAATACTGTAAATAGCTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp CTTCCACATAGCACAAGCTATTTACAGTATTCACATCCACTGTACCCCAGCAAACCCAGCGGTTCCCTTTaGGGAGAAGCCGTTCTCCTG +
Preference number: 4 (lower is better)
Translates to: LPHSTSYLQYSHPLYPSKPSGSL*GEAVLL
Trigger: CAGGAGAACGGCTTCTCCCCAAAGGGAACCGCTGGG...TTTGCTGGGGTACAGTGGATGTGAATACTGTAAATAGCTTGTGCTATGTGGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp CTTCCCCAGGGGGAAGACCAGAGAGGCTATGAGTGTGTGTGTGTGTTGTGTATGCTTGTGTCTCTCTCCTaGCTTCTTTACATCTTGCTT +
Preference number: 4 (lower is better)
Translates to: LPQGEDQRGYECVCVLCMLVSLS*LLYILL
Trigger: AAGCAAGATGTAAAGAAGGCAGGAGAGAGACACAAG...CATACACAACACACACACACACTCATAGCCTCTCTGGTCTTCCCCCTGGGGAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CCA 90 bp CAAGCTATTTACAGTATTCACATCCACTGTACCCCAGCAAACCAAGGCAAATACGTGGTGGGGGATGGTTaGCTGCTTCTTCGAGAAGGC +
Preference number: 4 (lower is better)
Translates to: QAIYSIHIHCTPANQGKYVVGDG*LLLREG
Trigger: GCCTTCTCGAAGAAGCAGCCAACCATCCCCCACCAC...GTATTTGCCTTGGTTTGCTGGGGTACAGTGGATGTGAATACTGTAAATAGCTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CCA 90 bp TTTACAGTATTCACATCCACTGTACCCCAGCAAACCAAGGCAAATACTACAAGTAGCACCTGCTCCCACTaGTCTTACGTCCAGGGGAGC +
Preference number: 4 (lower is better)
Translates to: FTVFTSTVPQQTKANTTSSTCSH*SYVQGS
Trigger: GCTCCCCTGGACGTAAGACCAGTGGGAGCAGGTGCT...ACTTGTAGTATTTGCCTTGGTTTGCTGGGGTACAGTGGATGTGAATACTGTAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000122129.8
CDS-3UTR GCA 90 bp CTTCCACATAGCACAAGCTATTTACAGTATTCACATCCACTGTACCCCAGCAAACTTCTCCAACCACACTaGCTTCTTGGCCGCCAGGTA +
Preference number: 4 (lower is better)
Translates to: LPHSTSYLQYSHPLYPSKLLQPH*LLGRQV
Trigger: TACCTGGCGGCCAAGAAGGCAGTGTGGTTGGAGAAG...TTTGCTGGGGTACAGTGGATGTGAATACTGTAAATAGCTTGTGCTATGTGGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR GCA 90 bp CTTCCACATAGCACAAGCTATTTACAGTATTCACATCCACTGTACCCCAGCAAAGTGACCTGTGGAGGCTaGACCACTGCTTTCTTGAGG +
Preference number: 4 (lower is better)
Translates to: LPHSTSYLQYSHPLYPSKVTCGG*TTAFLR
Trigger: CCTCAAGAAAGCAGTGGTGCAGCCTCCACAGGTCAC...TTTGCTGGGGTACAGTGGATGTGAATACTGTAAATAGCTTGTGCTATGTGGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp TTTACAGTATTCACATCCACTGTACCCCAGCAAACCAAGGCAAATACTACAAGTCGCTCAGCTGCAGGCTaGGATTGGTCTTACGTCCAG +
Preference number: 4 (lower is better)
Translates to: FTVFTSTVPQQTKANTTSRSAAG*DWSYVQ
Trigger: CTGGACGTAAGACCAATCGCAGCCTGCAGCTGAGCG...ACTTGTAGTATTTGCCTTGGTTTGCTGGGGTACAGTGGATGTGAATACTGTAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp CAAGCTATTTACAGTATTCACATCCACTGTACCCCAGCAAACCAAGGCAAATACCACTGTGGTGGGGGATaGTTGGCTGCTTCTTCGAGA +
Preference number: 4 (lower is better)
Translates to: QAIYSIHIHCTPANQGKYHCGGG*LAASSR
Trigger: TCTCGAAGAAGCAGCCAACCATCCCCCACCACAGTG...GTATTTGCCTTGGTTTGCTGGGGTACAGTGGATGTGAATACTGTAAATAGCTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CCA 90 bp TTTACAGTATTCACATCCACTGTACCCCAGCAAACCAAGGCAAATACTACAAGTTGTAGAGGGAGAGGATaGCCGGGCCTTGGACTTAGG +
Preference number: 4 (lower is better)
Translates to: FTVFTSTVPQQTKANTTSCRGRG*PGLGLR
Trigger: CCTAAGTCCAAGGCCCGGCCATCCTCTCCCTCTACA...ACTTGTAGTATTTGCCTTGGTTTGCTGGGGTACAGTGGATGTGAATACTGTAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR TCA 90 bp CTTCCACATAGCACAAGCTATTTACAGTATTCACATCCACTGTACCCCAGCAAATGCAGGGATCTGTGTTaGGGATTGCTCCTTCTGAGG +
Preference number: 4 (lower is better)
Translates to: LPHSTSYLQYSHPLYPSKCRDLC*GLLLLR
Trigger: CCTCAGAAGGAGCAATCCTCAACACAGATCCCTGCA...TTTGCTGGGGTACAGTGGATGTGAATACTGTAAATAGCTTGTGCTATGTGGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp TTTACAGTATTCACATCCACTGTACCCCAGCAAACCAAGGCAAATACTACAAGTCTTCTCCAACCACACTaGCTTCTTGGCCGCCAGGTA +
Preference number: 4 (lower is better)
Translates to: FTVFTSTVPQQTKANTTSLLQPH*LLGRQV
Trigger: TACCTGGCGGCCAAGAAGGCAGTGTGGTTGGAGAAG...ACTTGTAGTATTTGCCTTGGTTTGCTGGGGTACAGTGGATGTGAATACTGTAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR GCA 90 bp CTTCCACATAGCACAAGCTATTTACAGTATTCACATCCACTGTACCCCAGCAAATTTTTCTCAAGCTTCTaGCTCTGCCGCTCCTCCAGG +
Preference number: 4 (lower is better)
Translates to: LPHSTSYLQYSHPLYPSKFFSSF*LCRSSR
Trigger: CCTGGAGGAGCGGCAGAGGCAGAAGCTTGAGAAAAA...TTTGCTGGGGTACAGTGGATGTGAATACTGTAAATAGCTTGTGCTATGTGGAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR GCA 90 bp TTTACAGTATTCACATCCACTGTACCCCAGCAAACCAAGGCAAATACTACAAGTGACGATCCACAATGCTaGTCTCCCATGCGCTCAGCT +
Preference number: 4 (lower is better)
Translates to: FTVFTSTVPQQTKANTTSDDPQC*SPMRSA
Trigger: AGCTGAGCGCATGGGAGAGCAGCATTGTGGATCGTC...ACTTGTAGTATTTGCCTTGGTTTGCTGGGGTACAGTGGATGTGAATACTGTAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp CAAGCTATTTACAGTATTCACATCCACTGTACCCCAGCAAACCAAGGCAAATACTCAGACGATCCACAATaGTGCTCTCCCATGCGCTCA +
Preference number: 4 (lower is better)
Translates to: QAIYSIHIHCTPANQGKYSDDPQ*CSPMRS
Trigger: TGAGCGCATGGGAGAGCAGCATTGTGGATCGTCTGA...GTATTTGCCTTGGTTTGCTGGGGTACAGTGGATGTGAATACTGTAAATAGCTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp CTTCCACATAGCACAAGCTATTTACAGTATTCACATCCACTGTACCCCAGCAAATGGAGGCTGCACCACTaGTTTCTTGAGGAAGGCTTC +
Preference number: 4 (lower is better)
Translates to: LPHSTSYLQYSHPLYPSKWRLHH*FLEEGF
Trigger: GAAGCCTTCCTCAAGAAAGCAGTGGTGCAGCCTCCA...TTTGCTGGGGTACAGTGGATGTGAATACTGTAAATAGCTTGTGCTATGTGGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp TTTACAGTATTCACATCCACTGTACCCCAGCAAACCAAGGCAAATACTACAAGTGTGAGATCTGCCCTGTaGGATTCCCTGGTTCCAGTG +
Preference number: 4 (lower is better)
Translates to: FTVFTSTVPQQTKANTTSVRSAL*DSLVPV
Trigger: CACTGGAACCAGGGAATCCCACAGGGCAGATCTCAC...ACTTGTAGTATTTGCCTTGGTTTGCTGGGGTACAGTGGATGTGAATACTGTAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CCA 90 bp CTTCCACATAGCACAAGCTATTTACAGTATTCACATCCACTGTACCCCAGCAAACTTCTCGGCGCTCTTTaGCAAGCTTGTGTCTCTCTC +
Preference number: 4 (lower is better)
Translates to: LPHSTSYLQYSHPLYPSKLLGAL*QACVSL
Trigger: GAGAGAGACACAAGCTTGCCAAAGAGCGCCGAGAAG...TTTGCTGGGGTACAGTGGATGTGAATACTGTAAATAGCTTGTGCTATGTGGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR GCA 90 bp TTTACAGTATTCACATCCACTGTACCCCAGCAAACCAAGGCAAATACTACAAGTGTCTCCTTTGCATCCTaGTTCTTGGTTTCGGCGGCT +
Preference number: 4 (lower is better)
Translates to: FTVFTSTVPQQTKANTTSVSFAS*FLVSAA
Trigger: AGCCGCCGAAACCAAGAAGCAGGATGCAAAGGAGAC...ACTTGTAGTATTTGCCTTGGTTTGCTGGGGTACAGTGGATGTGAATACTGTAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR GCA 90 bp TTTACAGTATTCACATCCACTGTACCCCAGCAAACCAAGGCAAATACTACAAGTTGGAGGCTGCACCACTaGTTTCTTGAGGAAGGCTTC +
Preference number: 4 (lower is better)
Translates to: FTVFTSTVPQQTKANTTSWRLHH*FLEEGF
Trigger: GAAGCCTTCCTCAAGAAAGCAGTGGTGCAGCCTCCA...ACTTGTAGTATTTGCCTTGGTTTGCTGGGGTACAGTGGATGTGAATACTGTAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CCA 90 bp CAAGCTATTTACAGTATTCACATCCACTGTACCCCAGCAAACCAAGGCAAATACTCTTTACATCTTGCTTaGCAGGAGGGCTGTCAGAGG +
Preference number: 4 (lower is better)
Translates to: QAIYSIHIHCTPANQGKYSLHLA*QEGCQR
Trigger: CCTCTGACAGCCCTCCTGCCAAGCAAGATGTAAAGA...GTATTTGCCTTGGTTTGCTGGGGTACAGTGGATGTGAATACTGTAAATAGCTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR GCA 90 bp TTTACAGTATTCACATCCACTGTACCCCAGCAAACCAAGGCAAATACTACAAGTGCCTTCTTTACATCTTaGTTGGCAGGAGGGCTGTCA +
Preference number: 4 (lower is better)
Translates to: FTVFTSTVPQQTKANTTSAFFTS*LAGGLS
Trigger: TGACAGCCCTCCTGCCAAGCAAGATGTAAAGAAGGC...ACTTGTAGTATTTGCCTTGGTTTGCTGGGGTACAGTGGATGTGAATACTGTAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR GCA 90 bp CGCCTCTTCCACATAGCACAAGCTATTTACAGTATTCACATCCACTGTACCCCACTTGTGTCTCTCTCCTaGCTTCTTTACATCTTGCTT +
Preference number: 4 (lower is better)
Translates to: RLFHIAQAIYSIHIHCTPLVSLS*LLYILL
Trigger: AAGCAAGATGTAAAGAAGGCAGGAGAGAGACACAAG...TGGGGTACAGTGGATGTGAATACTGTAAATAGCTTGTGCTATGTGGAAGAGGCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CCA 90 bp TTTACAGTATTCACATCCACTGTACCCCAGCAAACCAAGGCAAATACTACAAGTTCTTTACATCTTGCTTaGCAGGAGGGCTGTCAGAGG +
Preference number: 4 (lower is better)
Translates to: FTVFTSTVPQQTKANTTSSLHLA*QEGCQR
Trigger: CCTCTGACAGCCCTCCTGCCAAGCAAGATGTAAAGA...ACTTGTAGTATTTGCCTTGGTTTGCTGGGGTACAGTGGATGTGAATACTGTAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS GCA 90 bp CGGAGGCCGAGCGCGGGCACACTGGCACGGCTGCAGAGGGATGAGTaGGGTCGGGGTGTGGCCCGGGCGCGAGGCTGGCCCCTGCCCGGG +
Preference number: 5 (lower is better)
Translates to: RRPSAGTLARLQRDE*GRGVARARGWPLPG
Trigger: CCCGGGCAGGGGCCAGCCTCGCGCCCGGGCCACACCCCGACCGCACTCATCCCTCTGCAGCCGTGCCAGTGTGCCCGCGCTCGGCCTCCG
79% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000125981.8
CDS TCA 90 bp CTGGCGGAGGCCGAGCGCGGGCACACTGGCACGGCTGCAGAGGGATaGGTGCGGTCGGGGTGTGGCCCGGGCGCGAGGCTGGCCCCTGCC +
Preference number: 5 (lower is better)
Translates to: LAEAERGHTGTAAEG*VRSGCGPGARLAPA
Trigger: GGCAGGGGCCAGCCTCGCGCCCGGGCCACACCCCGACCGCACTCATCCCTCTGCAGCCGTGCCAGTGTGCCCGCGCTCGGCCTCCGCCAG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000125981.8
CDS CCA 90 bp TGCAGCGGTGCGCGCTCCGAGGGGCGCTACAAGGCGTCAGGGGGCTaGCGGAGGCCGAGCGCGGGCACACTGGCACGGCCTGGTCCCTGC +
Preference number: 5 (lower is better)
Translates to: CSGARSEGRYKASGG*RRPSAGTLARPGPC
Trigger: GCAGGGACCAGGCCGTGCCAGTGTGCCCGCGCTCGGCCTCCGCCAGCCCCCTGACGCCTTGTAGCGCCCCTCGGAGCGCGCACCGCTGCA
77% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS CCA 90 bp TGCAGCGGTGCGCGCTCCGAGGGGCGCTACAAGGCGTCAGGGGGCTaGCGGAGGCCGAGCGCGGGCACACTGGCACGGCTGCAGAGGGAT +
Preference number: 5 (lower is better)
Translates to: CSGARSEGRYKASGG*RRPSAGTLARLQRD
Trigger: ATCCCTCTGCAGCCGTGCCAGTGTGCCCGCGCTCGGCCTCCGCCAGCCCCCTGACGCCTTGTAGCGCCCCTCGGAGCGCGCACCGCTGCA
74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000125981.8
CDS TCA 90 bp GCGGGCACACTGGCACGGCCTGGTCCCTGCCGTTGCGGGGCAGTGTaGCCGCGCTGCGACTCCGAGCCAGGAAGGAGAGGGTGGGCGTCA +
Preference number: 5 (lower is better)
Translates to: AGTLARPGPCRCGAV*PRCDSEPGRRGWAS
Trigger: TGACGCCCACCCTCTCCTTCCTGGCTCGGAGTCGCAGCGCGGTCACACTGCCCCGCAACGGCAGGGACCAGGCCGTGCCAGTGTGCCCGC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS CCA 90 bp GGCGGAGGAGGGGAAGGGTCACCTTCCGGAGACGGTCTTGGCTCTTaGGGGATCCTGGCTAACACAGCTGCGGGTGCGCCCGGGCCGGGC +
Preference number: 5 (lower is better)
Translates to: GGGGEGSPSGDGLGS*GILANTAAGAPGPG
Trigger: GCCCGGCCCGGGCGCACCCGCAGCTGTGTTAGCCAGGATCCCCCAAGAGCCAAGACCGTCTCCGGAAGGTGACCCTTCCCCTCCTCCGCC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS GCA 90 bp TGCCGCTCCTCCAGGGCAGCCCGGCGCTGTTCGGCTTTAAGCCGCTaGTCCTCCAGCCGTCGGCGGCGCTCCTGGAGTTGCTTTTCCCGG +
Preference number: 5 (lower is better)
Translates to: CRSSRAARRCSALSR*SSSRRRRSWSCFSR
Trigger: CCGGGAAAAGCAACTCCAGGAGCGCCGCCGACGGCTGGAGGAGCAGCGGCTTAAAGCCGAACAGCGCCGGGCTGCCCTGGAGGAGCGGCA
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS GCA 90 bp ACGGAGCACCTGCTCCCACTGGTCTTACGTCCAGGGGAGCTGTGGTaGAGGGCCCCTGCCCAGGACCAGCGCTGTTGCCGGATCTCAGCC +
Preference number: 5 (lower is better)
Translates to: TEHLLPLVLRPGELW*RAPAQDQRCCRISA
Trigger: GGCTGAGATCCGGCAACAGCGCTGGTCCTGGGCAGGGGCCCTGCACCACAGCTCCCCTGGACGTAAGACCAGTGGGAGCAGGTGCTCCGT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000122129.8
CDS CCA 90 bp CAGGGATCTGTGTTGAGGATTGCTCCTTCTGAGGCTGGGCTGGGGTaGGCGAGGGCACCGGTGAGGGCGCTGGTGAGGCTGGGGCAGCTG +
Preference number: 5 (lower is better)
Translates to: QGSVLRIAPSEAGLG*ARAPVRALVRLGQL
Trigger: CAGCTGCCCCAGCCTCACCAGCGCCCTCACCGGTGCCCTCGCCCACCCCAGCCCAGCCTCAGAAGGAGCAATCCTCAACACAGATCCCTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CAA 90 bp AGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCGAGGTGCCCGCCTGGTCCCTGCCGTaGCGGGGCAGTGTGACCGCG +
Preference number: 5 (lower is better)
Translates to: RTGGITPEATSIVWPEVPAWSLP*RGSVTA
Trigger: CGCGGTCACACTGCCCCGCAACGGCAGGGACCAGGC...GGGCACCTCGGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS GCA 90 bp CTCAGCTGCAGGCTGCGATTGGTCTTACGTCCAGGGGAGCTGTGGTaGAGGGCCCCTGCCCAGGACCAGCGCTGTTGCCGGATCTCAGCC +
Preference number: 5 (lower is better)
Translates to: LSCRLRLVLRPGELW*RAPAQDQRCCRISA
Trigger: GGCTGAGATCCGGCAACAGCGCTGGTCCTGGGCAGGGGCCCTGCACCACAGCTCCCCTGGACGTAAGACCAATCGCAGCCTGCAGCTGAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000125981.8
CDS CCA 90 bp GACACGGAGCACCTGCTCCCACTGGTCTTACGTCCAGGGGAGCTGTaGTGCAGGGCCCCTGCCCAGGACCAGCGCTGTTGCCGGATCTCA +
Preference number: 5 (lower is better)
Translates to: DTEHLLPLVLRPGEL*CRAPAQDQRCCRIS
Trigger: TGAGATCCGGCAACAGCGCTGGTCCTGGGCAGGGGCCCTGCACCACAGCTCCCCTGGACGTAAGACCAGTGGGAGCAGGTGCTCCGTGTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000122129.8
CDS CCA 90 bp CCCCTCTGCTGTGCGACCCAGACTCTTGTCCCCAGCGGTTCCCTTTaGGGAGAAGCCGTTCTCCTGGTGCGCTGGGAGAGGCTGCAGGCC +
Preference number: 5 (lower is better)
Translates to: PLCCATQTLVPSGSL*GEAVLLVRWERLQA
Trigger: GGCCTGCAGCCTCTCCCAGCGCACCAGGAGAACGGCTTCTCCCCAAAGGGAACCGCTGGGGACAAGAGTCTGGGTCGCACAGCAGAGGGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS GCA 90 bp CCAGGGGAGCTGTGGTGCAGGGCCCCTGCCCAGGACCAGCGCTGTTaGCGGATCTCAGCCCACGTCTTCTTCACTGACCGCTGGATTGCT +
Preference number: 5 (lower is better)
Translates to: PGELWCRAPAQDQRC*RISAHVFFTDRWIA
Trigger: AGCAATCCAGCGGTCAGTGAAGAAGACGTGGGCTGAGATCCGGCAACAGCGCTGGTCCTGGGCAGGGGCCCTGCACCACAGCTCCCCTGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS GCA 90 bp GCTCCCACTGGTCTTACGTCCAGGGGAGCTGTGGTGCAGGGCCCCTaGCCAGGACCAGCGCTGTTGCCGGATCTCAGCCCACGTCTTCTT +
Preference number: 5 (lower is better)
Translates to: APTGLTSRGAVVQGP*PGPALLPDLSPRLL
Trigger: AAGAAGACGTGGGCTGAGATCCGGCAACAGCGCTGGTCCTGGGCAGGGGCCCTGCACCACAGCTCCCCTGGACGTAAGACCAGTGGGAGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000122129.8
CDS TCA 90 bp CTTCAGGGCAGGAGGTGTGTCTGGGGGAGTGTCAGGAACCAAGGCTaGCATCGGTGTTGGCGGCGGAGGAGGGGAAGGGTCACCTTCCGG +
Preference number: 5 (lower is better)
Translates to: LQGRRCVWGSVRNQG*HRCWRRRRGRVTFR
Trigger: CCGGAAGGTGACCCTTCCCCTCCTCCGCCGCCAACACCGATGTCAGCCTTGGTTCCTGACACTCCCCCAGACACACCTCCTGCCCTGAAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS TCA 90 bp GGGACAGCAGTTTCTGCAGGGATCTGTGTTGAGGATTGCTCCTTCTaGGGCTGGGCTGGGGTGGGCGAGGGCACCGGTGAGGGCGCTGGT +
Preference number: 5 (lower is better)
Translates to: GTAVSAGICVEDCSF*GWAGVGEGTGEGAG
Trigger: ACCAGCGCCCTCACCGGTGCCCTCGCCCACCCCAGCCCAGCCTCAGAAGGAGCAATCCTCAACACAGATCCCTGCAGAAACTGCTGTCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS GCA 90 bp GCTGCGATTGGTCTTACGTCCAGGGGAGCTGTGGTGCAGGGCCCCTaGCCAGGACCAGCGCTGTTGCCGGATCTCAGCCCACGTCTTCTT +
Preference number: 5 (lower is better)
Translates to: AAIGLTSRGAVVQGP*PGPALLPDLSPRLL
Trigger: AAGAAGACGTGGGCTGAGATCCGGCAACAGCGCTGGTCCTGGGCAGGGGCCCTGCACCACAGCTCCCCTGGACGTAAGACCAATCGCAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000125981.8
CDS CCA 90 bp TCAGAGCCGGTGGAGAGCCGAGGTCTGATAGACGCTGGCAGCGACTaGCGCTTCTTGAGGTTCCGTTCGCGGGCCAGGGCGCTCTTTTCC +
Preference number: 5 (lower is better)
Translates to: SEPVESRGLIDAGSD*RFLRFRSRARALFS
Trigger: GGAAAAGAGCGCCCTGGCCCGCGAACGGAACCTCAAGAAGCGCCAGTCGCTGCCAGCGTCTATCAGACCTCGGCTCTCCACCGGCTCTGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CAA 90 bp TGGCCCGAGGTGCCCCTCCATTCCCAGACCTGGGTTCCCCCTCGGTTACAGTTAAGGCTGACATCGGTGTaGGCGGCGGAGGAGGGGAAG +
Preference number: 5 (lower is better)
Translates to: WPEVPLHSQTWVPPRLQLRLTSV*AAEEGK
Trigger: CTTCCCCTCCTCCGCCGCCAACACCGATGTCAGCCT...TAACTGTAACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCACCTCGGGCCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CAA 90 bp AGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCGAGGTGCCCGCGGCGCTCCTGGAGTaGCTTTTCCCGGAGCGCCTT +
Preference number: 5 (lower is better)
Translates to: RTGGITPEATSIVWPEVPAALLE*LFPERL
Trigger: AAGGCGCTCCGGGAAAAGCAACTCCAGGAGCGCCGC...GGGCACCTCGGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CAA 90 bp AGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCGAGGAGCGACTGGCGCTTCTaGAGGTTCCGTTCGCGGGCC +
Preference number: 5 (lower is better)
Translates to: RRGQGASPLKQPVLCGPRSDWRF*RFRSRA
Trigger: GGCCCGCGAACGGAACCTCAAGAAGCGCCAGTCGCT...CCTCGGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS TCA 90 bp AGCAGCTGGGACAGCCGGGACAGCAGTTTCTGCAGGGATCTGTGTTaGGGATTGCTCCTTCTGAGGCTGGGCTGGGGTGGGCGAGGGCAC +
Preference number: 5 (lower is better)
Translates to: SSWDSRDSSFCRDLC*GLLLLRLGWGGRGH
Trigger: GTGCCCTCGCCCACCCCAGCCCAGCCTCAGAAGGAGCAATCCTCAACACAGATCCCTGCAGAAACTGCTGTCCCGGCTGTCCCAGCTGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS GCA 90 bp GAGCCAGGAAGGAGAGGGTGGGCGTCATCAGACGATCCACAATGCTaGTCTCCCATGCGCTCAGCTGCAGGCTGCGATGTCCAGGGGAGC +
Preference number: 5 (lower is better)
Translates to: EPGRRGWASSDDPQC*SPMRSAAGCDVQGS
Trigger: GCTCCCCTGGACATCGCAGCCTGCAGCTGAGCGCATGGGAGAGCAGCATTGTGGATCGTCTGATGACGCCCACCCTCTCCTTCCTGGCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106132.3
CDS CCA 90 bp CCAGCCGTCGGCGGCGCTCCTGGAGTTGCTTTTCCCGGAGCGCCTTaGCTTTTTCCTCCTTCTCCAACCACACTGCCTTCTTGGCCGCCA +
Preference number: 5 (lower is better)
Translates to: PAVGGAPGVAFPGAP*LFPPSPTTLPSWPP
Trigger: TGGCGGCCAAGAAGGCAGTGTGGTTGGAGAAGGAGGAAAAAGCCAAGGCGCTCCGGGAAAAGCAACTCCAGGAGCGCCGCCGACGGCTGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS CCA 90 bp GTCCCCAGCGGTTCCCTTTGGGGAGAAGCCGTTCTCCTGGTGCGCTaGGAGAGGCTGCAGGCCATTTACCAGGGACCCTGGCATCTCCTT +
Preference number: 5 (lower is better)
Translates to: VPSGSLWGEAVLLVR*ERLQAIYQGPWHLL
Trigger: AAGGAGATGCCAGGGTCCCTGGTAAATGGCCTGCAGCCTCTCCCAGCGCACCAGGAGAACGGCTTCTCCCCAAAGGGAACCGCTGGGGAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS CCA 90 bp AGACTCTTGTCCCCAGCGGTTCCCTTTGGGGAGAAGCCGTTCTCCTaGTGCGCTGGGAGAGGCTGCAGGCCATTTACCAGGGACCCTGGC +
Preference number: 5 (lower is better)
Translates to: RLLSPAVPFGEKPFS*CAGRGCRPFTRDPG
Trigger: GCCAGGGTCCCTGGTAAATGGCCTGCAGCCTCTCCCAGCGCACCAGGAGAACGGCTTCTCCCCAAAGGGAACCGCTGGGGACAAGAGTCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS GCA 90 bp GCTTTAAGCCGCTGCTCCTCCAGCCGTCGGCGGCGCTCCTGGAGTTaGTTTTCCCGGAGCGCCTTGGCTTTTTCCTCCTTCTCCAACCAC +
Preference number: 5 (lower is better)
Translates to: ALSRCSSSRRRRSWS*FSRSALAFSSFSNH
Trigger: GTGGTTGGAGAAGGAGGAAAAAGCCAAGGCGCTCCGGGAAAAGCAACTCCAGGAGCGCCGCCGACGGCTGGAGGAGCAGCGGCTTAAAGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS GCA 90 bp GTTCCCTTTGGGGAGAAGCCGTTCTCCTGGTGCGCTGGGAGAGGCTaGAGGCCATTTACCAGGGACCCTGGCATCTCCTTGCTTGGCAGG +
Preference number: 5 (lower is better)
Translates to: VPFGEKPFSWCAGRG*RPFTRDPGISLLGR
Trigger: CCTGCCAAGCAAGGAGATGCCAGGGTCCCTGGTAAATGGCCTGCAGCCTCTCCCAGCGCACCAGGAGAACGGCTTCTCCCCAAAGGGAAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS CCA 90 bp TGTTCGGCTTTAAGCCGCTGCTCCTCCAGCCGTCGGCGGCGCTCCTaGAGTTGCTTTTCCCGGAGCGCCTTGGCTTTTTCCTCCTTCTCC +
Preference number: 5 (lower is better)
Translates to: CSALSRCSSSRRRRS*SCFSRSALAFSSFS
Trigger: GGAGAAGGAGGAAAAAGCCAAGGCGCTCCGGGAAAAGCAACTCCAGGAGCGCCGCCGACGGCTGGAGGAGCAGCGGCTTAAAGCCGAACA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CAA 90 bp TGTAATAACACTGATTCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCACCCTGGTCCCTGCCGTaGCGGGGCAGTGTGACCGCG +
Preference number: 5 (lower is better)
Translates to: CNNTDSRRGQGASPLKQPPWSLP*RGSVTA
Trigger: CGCGGTCACACTGCCCCGCAACGGCAGGGACCAGGG...TGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGAATCAGTGTTATTACA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000125981.8
CDS-3UTR CAA 90 bp ATCACCCCTGAAGCAACCAGTATTGTGTGGCCCGAGGTGCCCCTCCATTCCCAGCTCCGAACCCGCCCCTaGGGTGATGCAGTGGTGCCT +
Preference number: 5 (lower is better)
Translates to: ITPEATSIVWPEVPLHSQLRTRP*GDAVVP
Trigger: AGGCACCACTGCATCACCCAAGGGGCGGGTTCGGAG...CTGGGAATGGAGGGGCACCTCGGGCCACACAATACTGGTTGCTTCAGGGGTGAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS GCA 90 bp GAGCCAGGAAGGAGAGGGTGGGCGTCATCAGACGATCCACAATGCTaGTCTCCCATGCGCTCAGCTGCAGGCTGCGATTTCTACTGGGGG +
Preference number: 5 (lower is better)
Translates to: EPGRRGWASSDDPQC*SPMRSAAGCDFYWG
Trigger: CCCCCAGTAGAAATCGCAGCCTGCAGCTGAGCGCATGGGAGAGCAGCATTGTGGATCGTCTGATGACGCCCACCCTCTCCTTCCTGGCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000122129.8
CDS-3UTR CAA 90 bp GTATTGTGTGGCCCGAGGTGCCCCTCCATTCCCAGACCTGGGTTCCCCCTCGGTCGCTCTTTGGCAAGCTaGTGTCTCTCTCCTGCCTTC +
Preference number: 5 (lower is better)
Translates to: VLCGPRCPSIPRPGFPLGRSLAS*CLSPAF
Trigger: GAAGGCAGGAGAGAGACACAAGCTTGCCAAAGAGCG...ACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCACCTCGGGCCACACAATAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CAA 90 bp CGAGCGTGTAAGCACACGGATGTACTGAGGGGCAGTCCTGCTTTCAGCCAAAGATTGGCCGCCAGGTACTaGGCCCGCTCTTCTCGGCGC +
Preference number: 5 (lower is better)
Translates to: RACKHTDVLRGSPAFSQRLAARY*ARSSRR
Trigger: GCGCCGAGAAGAGCGGGCCAAGTACCTGGCGGCCAA...TCTTTGGCTGAAAGCAGGACTGCCCCTCAGTACATCCGTGTGCTTACACGCTCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CAA 90 bp TGTGTGTTGTGTATGGGGAAGATGGGTGTCCGAGCGTGTAAGCACACGGATGTACCCTGGTCCCTGCCGTaGCGGGGCAGTGTGACCGCG +
Preference number: 5 (lower is better)
Translates to: CVLCMGKMGVRACKHTDVPWSLP*RGSVTA
Trigger: CGCGGTCACACTGCCCCGCAACGGCAGGGACCAGGG...TACATCCGTGTGCTTACACGCTCGGACACCCATCTTCCCCATACACAACACACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000125981.8
CDS-3UTR CAA 90 bp TTCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCCTGGCATCTCCTTGCTaGGCAGGCTCCACTGTGGCT +
Preference number: 5 (lower is better)
Translates to: FQARTGGITPEATSIVWPLASPC*AGSTVA
Trigger: AGCCACAGTGGAGCCTGCCAAGCAAGGAGATGCCAG...GGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CAA 90 bp AGATGTAATAACACTGATTCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAAGCCTGGTCCCTGCCGTaGCGGGGCAGTGTGACCGCG +
Preference number: 5 (lower is better)
Translates to: RCNNTDSRRGQGASPLKQAWSLP*RGSVTA
Trigger: CGCGGTCACACTGCCCCGCAACGGCAGGGACCAGGC...TTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGAATCAGTGTTATTACATCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS CCA 90 bp AGGCTGCACCACTGCTTTCTTGAGGAAGGCTTCTGCCTCTGCAAATaGGAGGAGCCCCTCTGCTGTGCGACCCAGACTCTTGTCCCCAGC +
Preference number: 5 (lower is better)
Translates to: RLHHCFLEEGFCLCK*EEPLCCATQTLVPS
Trigger: GCTGGGGACAAGAGTCTGGGTCGCACAGCAGAGGGGCTCCTCCCATTTGCAGAGGCAGAAGCCTTCCTCAAGAAAGCAGTGGTGCAGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CAA 90 bp CGAGCGTGTAAGCACACGGATGTACTGAGGGGCAGTCCTGCTTTCAGCCAAAGAAGGCTGACATCGGTGTaGGCGGCGGAGGAGGGGAAG +
Preference number: 5 (lower is better)
Translates to: RACKHTDVLRGSPAFSQRRLTSV*AAEEGK
Trigger: CTTCCCCTCCTCCGCCGCCAACACCGATGTCAGCCT...TCTTTGGCTGAAAGCAGGACTGCCCCTCAGTACATCCGTGTGCTTACACGCTCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CAA 90 bp AGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCGAGGTGCCCTTTTCCCGGAGCGCCTaGGCTTTTTCCTCCTTCTCC +
Preference number: 5 (lower is better)
Translates to: RTGGITPEATSIVWPEVPFSRSA*AFSSFS
Trigger: GGAGAAGGAGGAAAAAGCCAAGGCGCTCCGGGAAAA...GGGCACCTCGGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CAA 90 bp TCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCGTCACTGACCGCTGGATaGCTGCTTCATAGCGCTCCT +
Preference number: 5 (lower is better)
Translates to: SRRGQGASPLKQPVLCGPSLTAG*LLHSAP
Trigger: AGGAGCGCTATGAAGCAGCAATCCAGCGGTCAGTGA...CGGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CAA 90 bp CGAGCGTGTAAGCACACGGATGTACTGAGGGGCAGTCCTGCTTTCAGCCAAAGACCAGGACCAGCGCTGTaGCCGGATCTCAGCCCACGT +
Preference number: 5 (lower is better)
Translates to: RACKHTDVLRGSPAFSQRPGPAL*PDLSPR
Trigger: ACGTGGGCTGAGATCCGGCAACAGCGCTGGTCCTGG...TCTTTGGCTGAAAGCAGGACTGCCCCTCAGTACATCCGTGTGCTTACACGCTCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CAA 90 bp GTGCCCCTCCATTCCCAGACCTGGGTTCCCCCTCGGTTACAGTTAAATAGAGGACCAGGACCAGCGCTGTaGCCGGATCTCAGCCCACGT +
Preference number: 5 (lower is better)
Translates to: VPLHSQTWVPPRLQLNRGPGPAL*PDLSPR
Trigger: ACGTGGGCTGAGATCCGGCAACAGCGCTGGTCCTGG...TCCTCTATTTAACTGTAACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CAA 90 bp GTATTGTGTGGCCCGAGGTGCCCCTCCATTCCCAGACCTGGGTTCCCCCTCGGTATAGAGTCCACGTGTTaGGGCAGGTTTACTGCCGAC +
Preference number: 5 (lower is better)
Translates to: VLCGPRCPSIPRPGFPLGIESTC*GRFTAD
Trigger: GTCGGCAGTAAACCTGCCCAAACACGTGGACTCTAT...ACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCACCTCGGGCCACACAATAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000122129.8
CDS-3UTR CAA 90 bp GTGCCCCTCCATTCCCAGACCTGGGTTCCCCCTCGGTTACAGTTAAATAGAGGACTCCGAACCCGCCCCTaGGGTGATGCAGTGGTGCCT +
Preference number: 5 (lower is better)
Translates to: VPLHSQTWVPPRLQLNRGLRTRP*GDAVVP
Trigger: AGGCACCACTGCATCACCCAAGGGGCGGGTTCGGAG...TCCTCTATTTAACTGTAACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS GCA 90 bp CTGTGGAGGCTGCACCACTGCTTTCTTGAGGAAGGCTTCTGCCTCTaGAAATGGGAGGAGCCCCTCTGCTGTGCGACCCAGACTCTTGTC +
Preference number: 5 (lower is better)
Translates to: LWRLHHCFLEEGFCL*KWEEPLCCATQTLV
Trigger: GACAAGAGTCTGGGTCGCACAGCAGAGGGGCTCCTCCCATTTGCAGAGGCAGAAGCCTTCCTCAAGAAAGCAGTGGTGCAGCCTCCACAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CAA 90 bp CGAGCGTGTAAGCACACGGATGTACTGAGGGGCAGTCCTGCTTTCAGCCAAAGACTTCCGGAGACGGTCTaGGCTCTTGGGGGATCCTGG +
Preference number: 5 (lower is better)
Translates to: RACKHTDVLRGSPAFSQRLPETV*ALGGSW
Trigger: CCAGGATCCCCCAAGAGCCAAGACCGTCTCCGGAAG...TCTTTGGCTGAAAGCAGGACTGCCCCTCAGTACATCCGTGTGCTTACACGCTCG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CAA 90 bp GTGCCCCTCCATTCCCAGACCTGGGTTCCCCCTCGGTTACAGTTAAATAGAGGACTTCCGGAGACGGTCTaGGCTCTTGGGGGATCCTGG +
Preference number: 5 (lower is better)
Translates to: VPLHSQTWVPPRLQLNRGLPETV*ALGGSW
Trigger: CCAGGATCCCCCAAGAGCCAAGACCGTCTCCGGAAG...TCCTCTATTTAACTGTAACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CAA 90 bp AGGGGCAGTCCTGCTTTCAGCCAAAGACATCACCAGTCTGTAAGGTGCGGATTATTGGCCGCCAGGTACTaGGCCCGCTCTTCTCGGCGC +
Preference number: 5 (lower is better)
Translates to: RGSPAFSQRHHQSVRCGLLAARY*ARSSRR
Trigger: GCGCCGAGAAGAGCGGGCCAAGTACCTGGCGGCCAA...TAATCCGCACCTTACAGACTGGTGATGTCTTTGGCTGAAAGCAGGACTGCCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CAA 90 bp TCCACTGTACCCCAGCAAACCAAGGCAAATACTACAAGTGGTCCTTCCCCAGGGGCGGCGCTCCTGGAGTaGCTTTTCCCGGAGCGCCTT +
Preference number: 5 (lower is better)
Translates to: STVPQQTKANTTSGPSPGAALLE*LFPERL
Trigger: AAGGCGCTCCGGGAAAAGCAACTCCAGGAGCGCCGC...CCCTGGGGAAGGACCACTTGTAGTATTTGCCTTGGTTTGCTGGGGTACAGTGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CAA 90 bp AGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCGAGGTGCCCTGCACCACTGCTTTCTaGAGGAAGGCTTCTGCCTCT +
Preference number: 5 (lower is better)
Translates to: RTGGITPEATSIVWPEVPCTTAF*RKASAS
Trigger: AGAGGCAGAAGCCTTCCTCAAGAAAGCAGTGGTGCA...GGGCACCTCGGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CAA 90 bp TGTAATAACACTGATTCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCACTTCCGGAGACGGTCTaGGCTCTTGGGGGATCCTGG +
Preference number: 5 (lower is better)
Translates to: CNNTDSRRGQGASPLKQPLPETV*ALGGSW
Trigger: CCAGGATCCCCCAAGAGCCAAGACCGTCTCCGGAAG...TGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGAATCAGTGTTATTACA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CAA 90 bp TCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCGTTCTTTACATCTTGCTaGGCAGGAGGGCTGTCAGAG +
Preference number: 5 (lower is better)
Translates to: SRRGQGASPLKQPVLCGPFFTSC*AGGLSE
Trigger: CTCTGACAGCCCTCCTGCCAAGCAAGATGTAAAGAA...CGGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CAA 90 bp TTCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCAGTATTGTGTGGCCCTCTTCTCGGCGCTCTTaGGCAAGCTTGTGTCTCTCT +
Preference number: 5 (lower is better)
Translates to: FQARTGGITPEATSIVWPSSRRS*ASLCLS
Trigger: AGAGAGACACAAGCTTGCCAAAGAGCGCCGAGAAGA...GGGCCACACAATACTGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CAA 90 bp GCTATGAGTGTGTGTGTGTGTTGTGTATGGGGAAGATGGGTGTCCGAGCGTGTACCAGGACCAGCGCTGTaGCCGGATCTCAGCCCACGT +
Preference number: 5 (lower is better)
Translates to: AMSVCVCCVWGRWVSERVPGPAL*PDLSPR
Trigger: ACGTGGGCTGAGATCCGGCAACAGCGCTGGTCCTGG...TACACGCTCGGACACCCATCTTCCCCATACACAACACACACACACACTCATAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CAA 90 bp AGGGGCAGTCCTGCTTTCAGCCAAAGACATCACCAGTCTGTAAGGTGCGGATTAAGCGACTGGCGCTTCTaGAGGTTCCGTTCGCGGGCC +
Preference number: 5 (lower is better)
Translates to: RGSPAFSQRHHQSVRCGLSDWRF*RFRSRA
Trigger: GGCCCGCGAACGGAACCTCAAGAAGCGCCAGTCGCT...TAATCCGCACCTTACAGACTGGTGATGTCTTTGGCTGAAAGCAGGACTGCCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CAA 90 bp TGTGTGTTGTGTATGGGGAAGATGGGTGTCCGAGCGTGTAAGCACACGGATGTACTCCGAACCCGCCCCTaGGGTGATGCAGTGGTGCCT +
Preference number: 5 (lower is better)
Translates to: CVLCMGKMGVRACKHTDVLRTRP*GDAVVP
Trigger: AGGCACCACTGCATCACCCAAGGGGCGGGTTCGGAG...TACATCCGTGTGCTTACACGCTCGGACACCCATCTTCCCCATACACAACACACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CAA 90 bp AGGGGCAGTCCTGCTTTCAGCCAAAGACATCACCAGTCTGTAAGGTGCGGATTAGTGCCCGCCATGGGTTaGCTAGGGGTCACCGAGGGA +
Preference number: 5 (lower is better)
Translates to: RGSPAFSQRHHQSVRCGLVPAMG*LGVTEG
Trigger: TCCCTCGGTGACCCCTAGCAAACCCATGGCGGGCAC...TAATCCGCACCTTACAGACTGGTGATGTCTTTGGCTGAAAGCAGGACTGCCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CAA 90 bp AGATGTAATAACACTGATTCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAAGTGCCCGCCATGGGTTaGCTAGGGGTCACCGAGGGA +
Preference number: 5 (lower is better)
Translates to: RCNNTDSRRGQGASPLKQVPAMG*LGVTEG
Trigger: TCCCTCGGTGACCCCTAGCAAACCCATGGCGGGCAC...TTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGAATCAGTGTTATTACATCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CAA 90 bp TTGATCAGATGTAATAACACTGATTCCAGGCGAGGACAGGGGGCATCACCCCTGGTGCCCGCCATGGGTTaGCTAGGGGTCACCGAGGGA +
Preference number: 5 (lower is better)
Translates to: LIRCNNTDSRRGQGASPLVPAMG*LGVTEG
Trigger: TCCCTCGGTGACCCCTAGCAAACCCATGGCGGGCAC...CAGGGGTGATGCCCCCTGTCCTCGCCTGGAATCAGTGTTATTACATCTGATCAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS GCA 90 bp GAGCCGCTTGTTGATTATAGAGTCCACGTGTTTGGGCAGGTTTACTaGCGACACGGAGCACCTGCTCCCACTGGTCTTACGTCCAGGGGA +
Preference number: 5 (lower is better)
Translates to: EPLVDYRVHVFGQVY*RHGAPAPTGLTSRG
Trigger: TCCCCTGGACGTAAGACCAGTGGGAGCAGGTGCTCCGTGTCGGCAGTAAACCTGCCCAAACACGTGGACTCTATAATCAACAAGCGGCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000122129.8
CDS-3UTR CAA 90 bp TCCACTGTACCCCAGCAAACCAAGGCAAATACTACAAGTGGTCCTTCCCCAGGGCTTCTTCGAGAAGGCTaGGCCTCCCGTGGTCCTGTG +
Preference number: 5 (lower is better)
Translates to: STVPQQTKANTTSGPSPGLLREG*ASRGPV
Trigger: CACAGGACCACGGGAGGCCAAGCCTTCTCGAAGAAG...CCCTGGGGAAGGACCACTTGTAGTATTTGCCTTGGTTTGCTGGGGTACAGTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CAA 90 bp ATCACCCCTGAAGCAACCAGTATTGTGTGGCCCGAGGTGCCCCTCCATTCCCAGATAGAGTCCACGTGTTaGGGCAGGTTTACTGCCGAC +
Preference number: 5 (lower is better)
Translates to: ITPEATSIVWPEVPLHSQIESTC*GRFTAD
Trigger: GTCGGCAGTAAACCTGCCCAAACACGTGGACTCTAT...CTGGGAATGGAGGGGCACCTCGGGCCACACAATACTGGTTGCTTCAGGGGTGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000122129.8
CDS-3UTR CAA 90 bp GTATTGTGTGGCCCGAGGTGCCCCTCCATTCCCAGACCTGGGTTCCCCCTCGGTTTTGAGAGCCGCTTGTaGATTATAGAGTCCACGTGT +
Preference number: 5 (lower is better)
Translates to: VLCGPRCPSIPRPGFPLGFESRL*IIESTC
Trigger: ACACGTGGACTCTATAATCAACAAGCGGCTCTCAAA...ACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCACCTCGGGCCACACAATAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000122129.8
CDS-3UTR CAA 90 bp TGGCCCGAGGTGCCCCTCCATTCCCAGACCTGGGTTCCCCCTCGGTTACAGTTATCGTTTTCCCGCTCCTaGTCCTTCTTCTCCTTTTTC +
Preference number: 5 (lower is better)
Translates to: WPEVPLHSQTWVPPRLQLSFSRS*SFFSFF
Trigger: GAAAAAGGAGAAGAAGGACAAGGAGCGGGAAAACGA...TAACTGTAACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCACCTCGGGCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CAA 90 bp ACATCCACTGTACCCCAGCAAACCAAGGCAAATACTACAAGTGGTCCTTCCCCAGTGCCCGCCATGGGTTaGCTAGGGGTCACCGAGGGA +
Preference number: 5 (lower is better)
Translates to: TSTVPQQTKANTTSGPSPVPAMG*LGVTEG
Trigger: TCCCTCGGTGACCCCTAGCAAACCCATGGCGGGCAC...TGGGGAAGGACCACTTGTAGTATTTGCCTTGGTTTGCTGGGGTACAGTGGATGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS TCA 90 bp CCAGGACCAGCGCTGTTGCCGGATCTCAGCCCACGTCTTCTTCACTaGCCGCTGGATTGCTGCTTCATAGCGCTCCTTGTTTTTCTCAAG +
Preference number: 5 (lower is better)
Translates to: PGPALLPDLSPRLLH*PLDCCFIALLVFLK
Trigger: CTTGAGAAAAACAAGGAGCGCTATGAAGCAGCAATCCAGCGGTCAGTGAAGAAGACGTGGGCTGAGATCCGGCAACAGCGCTGGTCCTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CAA 90 bp AGGGGCAGTCCTGCTTTCAGCCAAAGACATCACCAGTCTGTAAGGTGCGGATTACTTCTTCGAGAAGGCTaGGCCTCCCGTGGTCCTGTG +
Preference number: 5 (lower is better)
Translates to: RGSPAFSQRHHQSVRCGLLLREG*ASRGPV
Trigger: CACAGGACCACGGGAGGCCAAGCCTTCTCGAAGAAG...TAATCCGCACCTTACAGACTGGTGATGTCTTTGGCTGAAAGCAGGACTGCCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CAA 90 bp CTTCCCCAGGGGGAAGACCAGAGAGGCTATGAGTGTGTGTGTGTGTTGTGTATGTGTGGTGGGGGATGGTaGGCTGCTTCTTCGAGAAGG +
Preference number: 5 (lower is better)
Translates to: LPQGEDQRGYECVCVLCMCGGGW*AASSRR
Trigger: CCTTCTCGAAGAAGCAGCCAACCATCCCCCACCACA...CATACACAACACACACACACACTCATAGCCTCTCTGGTCTTCCCCCTGGGGAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CAA 90 bp TGTAATAACACTGATTCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAACCATGTGGTGGGGGATGGTaGGCTGCTTCTTCGAGAAGG +
Preference number: 5 (lower is better)
Translates to: CNNTDSRRGQGASPLKQPCGGGW*AASSRR
Trigger: CCTTCTCGAAGAAGCAGCCAACCATCCCCCACCACA...TGGTTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGAATCAGTGTTATTACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CAA 90 bp CGAGCGTGTAAGCACACGGATGTACTGAGGGGCAGTCCTGCTTTCAGCCAAAGATTTTCCCGGAGCGCCTaGGCTTTTTCCTCCTTCTCC +
Preference number: 5 (lower is better)
Translates to: RACKHTDVLRGSPAFSQRFSRSA*AFSSFS
Trigger: GGAGAAGGAGGAAAAAGCCAAGGCGCTCCGGGAAAA...TCTTTGGCTGAAAGCAGGACTGCCCCTCAGTACATCCGTGTGCTTACACGCTCG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CAA 90 bp AGATGTAATAACACTGATTCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAACTGGCATCTCCTTGCTaGGCAGGCTCCACTGTGGCT +
Preference number: 5 (lower is better)
Translates to: RCNNTDSRRGQGASPLKQLASPC*AGSTVA
Trigger: AGCCACAGTGGAGCCTGCCAAGCAAGGAGATGCCAG...TTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGAATCAGTGTTATTACATCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CAA 90 bp AGATGTAATAACACTGATTCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAATGTGGTGGGGGATGGTaGGCTGCTTCTTCGAGAAGG +
Preference number: 5 (lower is better)
Translates to: RCNNTDSRRGQGASPLKQCGGGW*AASSRR
Trigger: CCTTCTCGAAGAAGCAGCCAACCATCCCCCACCACA...TTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGAATCAGTGTTATTACATCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CAA 90 bp ATCACCCCTGAAGCAACCAGTATTGTGTGGCCCGAGGTGCCCCTCCATTCCCAGTCGTTTTCCCGCTCCTaGTCCTTCTTCTCCTTTTTC +
Preference number: 5 (lower is better)
Translates to: ITPEATSIVWPEVPLHSQSFSRS*SFFSFF
Trigger: GAAAAAGGAGAAGAAGGACAAGGAGCGGGAAAACGA...CTGGGAATGGAGGGGCACCTCGGGCCACACAATACTGGTTGCTTCAGGGGTGAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CAA 90 bp GTGCCCCTCCATTCCCAGACCTGGGTTCCCCCTCGGTTACAGTTAAATAGAGGACTGCAGGGATCTGTGTaGAGGATTGCTCCTTCTGAG +
Preference number: 5 (lower is better)
Translates to: VPLHSQTWVPPRLQLNRGLQGSV*RIAPSE
Trigger: CTCAGAAGGAGCAATCCTCAACACAGATCCCTGCAG...TCCTCTATTTAACTGTAACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CAA 90 bp GTGCCCCTCCATTCCCAGACCTGGGTTCCCCCTCGGTTACAGTTAAATAGAGGACCGCTTTCTTCGCTCTaGTCTCTCCTGTTCCTCCTT +
Preference number: 5 (lower is better)
Translates to: VPLHSQTWVPPRLQLNRGPLSSL*SLLFLL
Trigger: AAGGAGGAACAGGAGAGACAAGAGCGAAGAAAGCGG...TCCTCTATTTAACTGTAACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS TCA 90 bp GCTGCGATTTCTACTGGGGGAGTTCCAGAGCGTGGCAGAGGACTTTaGGAGCCGCTTGTTGATTATAGAGTCCACGTGTTTGGGCAGGTT +
Preference number: 5 (lower is better)
Translates to: AAISTGGVPERGRGL*EPLVDYRVHVFGQV
Trigger: AACCTGCCCAAACACGTGGACTCTATAATCAACAAGCGGCTCTCAAAGTCCTCTGCCACGCTCTGGAACTCCCCCAGTAGAAATCGCAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000122129.8
CDS TCA 90 bp AGCTGCGGTCTCCTTTGCATCCTGCTTCTTGGTTTCGGCGGCTTCTaGTTTCCGAGTCCTCTTCATTATCTCCTCCAGCCGCTTTCTTCG +
Preference number: 5 (lower is better)
Translates to: SCGLLCILLLGFGGF*FPSPLHYLLQPLSS
Trigger: CGAAGAAAGCGGCTGGAGGAGATAATGAAGAGGACTCGGAAATCAGAAGCCGCCGAAACCAAGAAGCAGGATGCAAAGGAGACCGCAGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS GCA 90 bp ACAGGGTCTGGGCCGGAATTGTTAGCTGCGGTCTCCTTTGCATCCTaGTTCTTGGTTTCGGCGGCTTCTGATTTCCGAGTCCTCTTCATT +
Preference number: 5 (lower is better)
Translates to: TGSGPELLAAVSFAS*FLVSAASDFRVLFI
Trigger: AATGAAGAGGACTCGGAAATCAGAAGCCGCCGAAACCAAGAAGCAGGATGCAAAGGAGACCGCAGCTAACAATTCCGGCCCAGACCCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CAA 90 bp GTGCCCCTCCATTCCCAGACCTGGGTTCCCCCTCGGTTACAGTTAAATAGAGGATTCTTTACATCTTGCTaGGCAGGAGGGCTGTCAGAG +
Preference number: 5 (lower is better)
Translates to: VPLHSQTWVPPRLQLNRGFFTSC*AGGLSE
Trigger: CTCTGACAGCCCTCCTGCCAAGCAAGATGTAAAGAA...TCCTCTATTTAACTGTAACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CAA 90 bp TCACCAGTCTGTAAGGTGCGGATTAAAAACAAAGAGGAACTCTGCCCCCAGGGGCGCTCTTTGGCAAGCTaGTGTCTCTCTCCTGCCTTC +
Preference number: 5 (lower is better)
Translates to: SPVCKVRIKNKEELCPQGRSLAS*CLSPAF
Trigger: GAAGGCAGGAGAGAGACACAAGCTTGCCAAAGAGCG...CCCCTGGGGGCAGAGTTCCTCTTTGTTTTTAATCCGCACCTTACAGACTGGTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CAA 90 bp TGTGTGTTGTGTATGGGGAAGATGGGTGTCCGAGCGTGTAAGCACACGGATGTATCACTGACCGCTGGATaGCTGCTTCATAGCGCTCCT +
Preference number: 5 (lower is better)
Translates to: CVLCMGKMGVRACKHTDVSLTAG*LLHSAP
Trigger: AGGAGCGCTATGAAGCAGCAATCCAGCGGTCAGTGA...TACATCCGTGTGCTTACACGCTCGGACACCCATCTTCCCCATACACAACACACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CAA 90 bp GCTATGAGTGTGTGTGTGTGTTGTGTATGGGGAAGATGGGTGTCCGAGCGTGTATCACTGACCGCTGGATaGCTGCTTCATAGCGCTCCT +
Preference number: 5 (lower is better)
Translates to: AMSVCVCCVWGRWVSERVSLTAG*LLHSAP
Trigger: AGGAGCGCTATGAAGCAGCAATCCAGCGGTCAGTGA...TACACGCTCGGACACCCATCTTCCCCATACACAACACACACACACACTCATAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CAA 90 bp CTTCCCCAGGGGGAAGACCAGAGAGGCTATGAGTGTGTGTGTGTGTTGTGTATGCTGCAGGGATCTGTGTaGAGGATTGCTCCTTCTGAG +
Preference number: 5 (lower is better)
Translates to: LPQGEDQRGYECVCVLCMLQGSV*RIAPSE
Trigger: CTCAGAAGGAGCAATCCTCAACACAGATCCCTGCAG...CATACACAACACACACACACACTCATAGCCTCTCTGGTCTTCCCCCTGGGGAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CAA 90 bp GCTATGAGTGTGTGTGTGTGTTGTGTATGGGGAAGATGGGTGTCCGAGCGTGTATCTTCTCGGCGCTCTTaGGCAAGCTTGTGTCTCTCT +
Preference number: 5 (lower is better)
Translates to: AMSVCVCCVWGRWVSERVSSRRS*ASLCLS
Trigger: AGAGAGACACAAGCTTGCCAAAGAGCGCCGAGAAGA...TACACGCTCGGACACCCATCTTCCCCATACACAACACACACACACACTCATAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CAA 90 bp TCACCAGTCTGTAAGGTGCGGATTAAAAACAAAGAGGAACTCTGCCCCCAGGGGTCTTCTCGGCGCTCTTaGGCAAGCTTGTGTCTCTCT +
Preference number: 5 (lower is better)
Translates to: SPVCKVRIKNKEELCPQGSSRRS*ASLCLS
Trigger: AGAGAGACACAAGCTTGCCAAAGAGCGCCGAGAAGA...CCCCTGGGGGCAGAGTTCCTCTTTGTTTTTAATCCGCACCTTACAGACTGGTGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CAA 90 bp GTGCCCCTCCATTCCCAGACCTGGGTTCCCCCTCGGTTACAGTTAAATAGAGGAGACTTTGAGAGCCGCTaGTTGATTATAGAGTCCACG +
Preference number: 5 (lower is better)
Translates to: VPLHSQTWVPPRLQLNRGDFESR*LIIEST
Trigger: CGTGGACTCTATAATCAACAAGCGGCTCTCAAAGTC...TCCTCTATTTAACTGTAACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000122129.8
CDS-3UTR CAA 90 bp CTTCCACATAGCACAAGCTATTTACAGTATTCACATCCACTGTACCCCAGCAAAAGCGACTGGCGCTTCTaGAGGTTCCGTTCGCGGGCC +
Preference number: 5 (lower is better)
Translates to: LPHSTSYLQYSHPLYPSKSDWRF*RFRSRA
Trigger: GGCCCGCGAACGGAACCTCAAGAAGCGCCAGTCGCT...TTTGCTGGGGTACAGTGGATGTGAATACTGTAAATAGCTTGTGCTATGTGGAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CAA 90 bp CAAGCTATTTACAGTATTCACATCCACTGTACCCCAGCAAACCAAGGCAAATACCTCCGAACCCGCCCCTaGGGTGATGCAGTGGTGCCT +
Preference number: 5 (lower is better)
Translates to: QAIYSIHIHCTPANQGKYLRTRP*GDAVVP
Trigger: AGGCACCACTGCATCACCCAAGGGGCGGGTTCGGAG...GTATTTGCCTTGGTTTGCTGGGGTACAGTGGATGTGAATACTGTAAATAGCTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CAA 90 bp TTGATCAGATGTAATAACACTGATTCCAGGCGAGGACAGGGGGCATCACCCCTGCCGCTTTCTTCGCTCTaGTCTCTCCTGTTCCTCCTT +
Preference number: 5 (lower is better)
Translates to: LIRCNNTDSRRGQGASPLPLSSL*SLLFLL
Trigger: AAGGAGGAACAGGAGAGACAAGAGCGAAGAAAGCGG...CAGGGGTGATGCCCCCTGTCCTCGCCTGGAATCAGTGTTATTACATCTGATCAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CAA 90 bp TCACCAGTCTGTAAGGTGCGGATTAAAAACAAAGAGGAACTCTGCCCCCAGGGGCCGCTTTCTTCGCTCTaGTCTCTCCTGTTCCTCCTT +
Preference number: 5 (lower is better)
Translates to: SPVCKVRIKNKEELCPQGPLSSL*SLLFLL
Trigger: AAGGAGGAACAGGAGAGACAAGAGCGAAGAAAGCGG...CCCCTGGGGGCAGAGTTCCTCTTTGTTTTTAATCCGCACCTTACAGACTGGTGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CAA 90 bp TTGATCAGATGTAATAACACTGATTCCAGGCGAGGACAGGGGGCATCACCCCTGTGCACCACTGCTTTCTaGAGGAAGGCTTCTGCCTCT +
Preference number: 5 (lower is better)
Translates to: LIRCNNTDSRRGQGASPLCTTAF*RKASAS
Trigger: AGAGGCAGAAGCCTTCCTCAAGAAAGCAGTGGTGCA...CAGGGGTGATGCCCCCTGTCCTCGCCTGGAATCAGTGTTATTACATCTGATCAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CAA 90 bp TGTGTGTTGTGTATGGGGAAGATGGGTGTCCGAGCGTGTAAGCACACGGATGTATGCACCACTGCTTTCTaGAGGAAGGCTTCTGCCTCT +
Preference number: 5 (lower is better)
Translates to: CVLCMGKMGVRACKHTDVCTTAF*RKASAS
Trigger: AGAGGCAGAAGCCTTCCTCAAGAAAGCAGTGGTGCA...TACATCCGTGTGCTTACACGCTCGGACACCCATCTTCCCCATACACAACACACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CAA 90 bp TTGATCAGATGTAATAACACTGATTCCAGGCGAGGACAGGGGGCATCACCCCTGTTCTTTACATCTTGCTaGGCAGGAGGGCTGTCAGAG +
Preference number: 5 (lower is better)
Translates to: LIRCNNTDSRRGQGASPLFFTSC*AGGLSE
Trigger: CTCTGACAGCCCTCCTGCCAAGCAAGATGTAAAGAA...CAGGGGTGATGCCCCCTGTCCTCGCCTGGAATCAGTGTTATTACATCTGATCAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CAA 90 bp TTTACAGTATTCACATCCACTGTACCCCAGCAAACCAAGGCAAATACTACAAGTCCAGGACCAGCGCTGTaGCCGGATCTCAGCCCACGT +
Preference number: 5 (lower is better)
Translates to: FTVFTSTVPQQTKANTTSPGPAL*PDLSPR
Trigger: ACGTGGGCTGAGATCCGGCAACAGCGCTGGTCCTGG...ACTTGTAGTATTTGCCTTGGTTTGCTGGGGTACAGTGGATGTGAATACTGTAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CAA 90 bp GTGCCCCTCCATTCCCAGACCTGGGTTCCCCCTCGGTTACAGTTAAATAGAGGATTTGAGAGCCGCTTGTaGATTATAGAGTCCACGTGT +
Preference number: 5 (lower is better)
Translates to: VPLHSQTWVPPRLQLNRGFESRL*IIESTC
Trigger: ACACGTGGACTCTATAATCAACAAGCGGCTCTCAAA...TCCTCTATTTAACTGTAACCGAGGGGGAACCCAGGTCTGGGAATGGAGGGGCAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000122129.8
CDS-3UTR CAA 90 bp AGATGTAATAACACTGATTCCAGGCGAGGACAGGGGGCATCACCCCTGAAGCAAGACTTTGAGAGCCGCTaGTTGATTATAGAGTCCACG +
Preference number: 5 (lower is better)
Translates to: RCNNTDSRRGQGASPLKQDFESR*LIIEST
Trigger: CGTGGACTCTATAATCAACAAGCGGCTCTCAAAGTC...TTGCTTCAGGGGTGATGCCCCCTGTCCTCGCCTGGAATCAGTGTTATTACATCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000122129.8
CDS-3UTR CAA 90 bp GCTATGAGTGTGTGTGTGTGTTGTGTATGGGGAAGATGGGTGTCCGAGCGTGTATCGTTTTCCCGCTCCTaGTCCTTCTTCTCCTTTTTC +
Preference number: 5 (lower is better)
Translates to: AMSVCVCCVWGRWVSERVSFSRS*SFFSFF
Trigger: GAAAAAGGAGAAGAAGGACAAGGAGCGGGAAAACGA...TACACGCTCGGACACCCATCTTCCCCATACACAACACACACACACACTCATAGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CAA 90 bp CTTCCACATAGCACAAGCTATTTACAGTATTCACATCCACTGTACCCCAGCAAACTGGCATCTCCTTGCTaGGCAGGCTCCACTGTGGCT +
Preference number: 5 (lower is better)
Translates to: LPHSTSYLQYSHPLYPSKLASPC*AGSTVA
Trigger: AGCCACAGTGGAGCCTGCCAAGCAAGGAGATGCCAG...TTTGCTGGGGTACAGTGGATGTGAATACTGTAAATAGCTTGTGCTATGTGGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CAA 90 bp CAAGCTATTTACAGTATTCACATCCACTGTACCCCAGCAAACCAAGGCAAATACCGCTCTTTGGCAAGCTaGTGTCTCTCTCCTGCCTTC +
Preference number: 5 (lower is better)
Translates to: QAIYSIHIHCTPANQGKYRSLAS*CLSPAF
Trigger: GAAGGCAGGAGAGAGACACAAGCTTGCCAAAGAGCG...GTATTTGCCTTGGTTTGCTGGGGTACAGTGGATGTGAATACTGTAAATAGCTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CAA 90 bp TTTACAGTATTCACATCCACTGTACCCCAGCAAACCAAGGCAAATACTACAAGTTTTTCCCGGAGCGCCTaGGCTTTTTCCTCCTTCTCC +
Preference number: 5 (lower is better)
Translates to: FTVFTSTVPQQTKANTTSFSRSA*AFSSFS
Trigger: GGAGAAGGAGGAAAAAGCCAAGGCGCTCCGGGAAAA...ACTTGTAGTATTTGCCTTGGTTTGCTGGGGTACAGTGGATGTGAATACTGTAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS-3UTR CAA 90 bp CGCCTCTTCCACATAGCACAAGCTATTTACAGTATTCACATCCACTGTACCCCATCGTTTTCCCGCTCCTaGTCCTTCTTCTCCTTTTTC +
Preference number: 5 (lower is better)
Translates to: RLFHIAQAIYSIHIHCTPSFSRS*SFFSFF
Trigger: GAAAAAGGAGAAGAAGGACAAGGAGCGGGAAAACGA...TGGGGTACAGTGGATGTGAATACTGTAAATAGCTTGTGCTATGTGGAAGAGGCG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CAA 90 bp CAAGCTATTTACAGTATTCACATCCACTGTACCCCAGCAAACCAAGGCAAATACCTGCAGGGATCTGTGTaGAGGATTGCTCCTTCTGAG +
Preference number: 5 (lower is better)
Translates to: QAIYSIHIHCTPANQGKYLQGSV*RIAPSE
Trigger: CTCAGAAGGAGCAATCCTCAACACAGATCCCTGCAG...GTATTTGCCTTGGTTTGCTGGGGTACAGTGGATGTGAATACTGTAAATAGCTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CAA 90 bp CTTCCACATAGCACAAGCTATTTACAGTATTCACATCCACTGTACCCCAGCAAACCGCTTTCTTCGCTCTaGTCTCTCCTGTTCCTCCTT +
Preference number: 5 (lower is better)
Translates to: LPHSTSYLQYSHPLYPSKPLSSL*SLLFLL
Trigger: AAGGAGGAACAGGAGAGACAAGAGCGAAGAAAGCGG...TTTGCTGGGGTACAGTGGATGTGAATACTGTAAATAGCTTGTGCTATGTGGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS-3UTR CAA 90 bp CTTCCACATAGCACAAGCTATTTACAGTATTCACATCCACTGTACCCCAGCAAATGCACCACTGCTTTCTaGAGGAAGGCTTCTGCCTCT +
Preference number: 5 (lower is better)
Translates to: LPHSTSYLQYSHPLYPSKCTTAF*RKASAS
Trigger: AGAGGCAGAAGCCTTCCTCAAGAAAGCAGTGGTGCA...TTTGCTGGGGTACAGTGGATGTGAATACTGTAAATAGCTTGTGCTATGTGGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS CCA 72 bp GCGCGCTCCGAGGGGCGCTACAAGGCGTCAGGGGGCTaGCGGAGGCCGAGCGCGGGCACACTGGCACGGCTG +
Preference number: 6 (lower is better)
Translates to: ARSEGRYKASGG*RRPSAGTLARL
Trigger: CAGCCGTGCCAGTGTGCCCGCGCTCGGCCTCCGCCAGCCCCCTGACGCCTTGTAGCGCCCCTCGGAGCGCGC
78% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000125981.8
CDS CCA 72 bp GCGCGCTCCGAGGGGCGCTACAAGGCGTCAGGGGGCTaGCGGAGGCCGAGCGCGGGCACACTGGCACGGCCT +
Preference number: 6 (lower is better)
Translates to: ARSEGRYKASGG*RRPSAGTLARP
Trigger: AGGCCGTGCCAGTGTGCCCGCGCTCGGCCTCCGCCAGCCCCCTGACGCCTTGTAGCGCCCCTCGGAGCGCGC
78% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS GCA 72 bp GCTGGCGGAGGCCGAGCGCGGGCACACTGGCACGGCTaGAGAGGGATGAGTGCGGTCGGGGTGTGGCCCGGG +
Preference number: 6 (lower is better)
Translates to: AGGGRARAHWHG*RGMSAVGVWPG
Trigger: CCCGGGCCACACCCCGACCGCACTCATCCCTCTGCAGCCGTGCCAGTGTGCCCGCGCTCGGCCTCCGCCAGC
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000125981.8
CDS CAA 72 bp CTCCCAGGGCCGCTGCCCCTACCCTGGTCCCTGCCGTaGCGGGGCAGTGTGACCGCGCTGCGACTCCGAGCC +
Preference number: 6 (lower is better)
Translates to: LPGPLPLPWSLP*RGSVTALRLRA
Trigger: GGCTCGGAGTCGCAGCGCGGTCACACTGCCCCGCAACGGCAGGGACCAGGGTAGGGGCAGCGGCCCTGGGAG
75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000125981.8
CDS CAA 72 bp GAGCGCGGGCACACTGGCACGGCCTGGTCCCTGCCGTaGCGGGGCAGTGTGACCGCGCTGCGACTCCGAGCC +
Preference number: 6 (lower is better)
Translates to: ERGHTGTAWSLP*RGSVTALRLRA
Trigger: GGCTCGGAGTCGCAGCGCGGTCACACTGCCCCGCAACGGCAGGGACCAGGCCGTGCCAGTGTGCCCGCGCTC
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS GCA 72 bp TCCAGGGCAGCCCGGCGCTGTTCGGCTTTAAGCCGCTaGTCCTCCAGCCGTCGGCGGCGCTCCTGGAGTTGC +
Preference number: 6 (lower is better)
Translates to: SRAARRCSALSR*SSSRRRRSWSC
Trigger: GCAACTCCAGGAGCGCCGCCGACGGCTGGAGGAGCAGCGGCTTAAAGCCGAACAGCGCCGGGCTGCCCTGGA
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS CCA 72 bp GCGCTCAGCTGCAGGCTGCGATGTCCAGGGGAGCTGTaGTGCAGGGCCCCTGCCCAGGACCAGCGCTGTTGC +
Preference number: 6 (lower is better)
Translates to: ALSCRLRCPGEL*CRAPAQDQRCC
Trigger: GCAACAGCGCTGGTCCTGGGCAGGGGCCCTGCACCACAGCTCCCCTGGACATCGCAGCCTGCAGCTGAGCGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106132.3
CDS GCA 72 bp CTGCTCCCACTGGTCTTACGTCCAGGGGAGCTGTGGTaGAGGGCCCCTGCCCAGGACCAGCGCTGTTGCCGG +
Preference number: 6 (lower is better)
Translates to: LLPLVLRPGELW*RAPAQDQRCCR
Trigger: CCGGCAACAGCGCTGGTCCTGGGCAGGGGCCCTGCACCACAGCTCCCCTGGACGTAAGACCAGTGGGAGCAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000122129.8
CDS CCA 72 bp CACCTTCCGGAGACGGTCTTGGCTCTTGGGGGATCCTaGCTAACACAGCTGCGGGTGCGCCCGGGCCGGGCT +
Preference number: 6 (lower is better)
Translates to: HLPETVLALGGS*LTQLRVRPGRA
Trigger: AGCCCGGCCCGGGCGCACCCGCAGCTGTGTTAGCCAGGATCCCCCAAGAGCCAAGACCGTCTCCGGAAGGTG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS CCA 72 bp CCCGAGCCTGGCGCCGCTTTTCAGCCAGGAGCCGCGTaGCTTCCTCTCGGTCTGTGGTGCCCGCCATGGGTT +
Preference number: 6 (lower is better)
Translates to: PEPGAAFQPGAA*LPLGLWCPPWV
Trigger: AACCCATGGCGGGCACCACAGACCGAGAGGAAGCCACGCGGCTCCTGGCTGAAAAGCGGCGCCAGGCTCGGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS CAA 90 bp GTGTTGGCGGCGGAGGAGGGGAAGGGTCACCTTCCGGAGACGGTCTaGGCTCTTGGGGGATCCTGGCTAACACAGCTGCGGGTGCGCCCG +
Preference number: 6 (lower is better)
Translates to: VLAAEEGKGHLPETV*ALGGSWLTQLRVRP
Trigger: CGGGCGCACCCGCAGCTGTGTTAGCCAGGATCCCCCAAGAGCCAAGACCGTCTCCGGAAGGTGACCCTTCCCCTCCTCCGCCGCCAACAC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS CAA 90 bp AGGAGCCGCGTGGCTTCCTCTCGGTCTGTGGTGCCCGCCATGGGTTaGCTAGGGGTCACCGAGGGAGCAGCGGTAGGAGGGGCAGTCGGA +
Preference number: 6 (lower is better)
Translates to: RSRVASSRSVVPAMG*LGVTEGAAVGGAVG
Trigger: TCCGACTGCCCCTCCTACCGCTGCTCCCTCGGTGACCCCTAGCAAACCCATGGCGGGCACCACAGACCGAGAGGAAGCCACGCGGCTCCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS GCA 72 bp AGGCTGCGATTGGTCTTACGTCCAGGGGAGCTGTGGTaGAGGGCCCCTGCCCAGGACCAGCGCTGTTGCCGG +
Preference number: 6 (lower is better)
Translates to: RLRLVLRPGELW*RAPAQDQRCCR
Trigger: CCGGCAACAGCGCTGGTCCTGGGCAGGGGCCCTGCACCACAGCTCCCCTGGACGTAAGACCAATCGCAGCCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000125981.8
CDS CCA 72 bp CACCTGCTCCCACTGGTCTTACGTCCAGGGGAGCTGTaGTGCAGGGCCCCTGCCCAGGACCAGCGCTGTTGC +
Preference number: 6 (lower is better)
Translates to: HLLPLVLRPGEL*CRAPAQDQRCC
Trigger: GCAACAGCGCTGGTCCTGGGCAGGGGCCCTGCACCACAGCTCCCCTGGACGTAAGACCAGTGGGAGCAGGTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000122129.8
CDS GCA 72 bp CTGTGGTGCAGGGCCCCTGCCCAGGACCAGCGCTGTTaGCGGATCTCAGCCCACGTCTTCTTCACTGACCGC +
Preference number: 6 (lower is better)
Translates to: LWCRAPAQDQRC*RISAHVFFTDR
Trigger: GCGGTCAGTGAAGAAGACGTGGGCTGAGATCCGGCAACAGCGCTGGTCCTGGGCAGGGGCCCTGCACCACAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS CCA 72 bp GGGGAAGGGTCACCTTCCGGAGACGGTCTTGGCTCTTaGGGGATCCTGGCTAACACAGCTGCGGGTGCGCCC +
Preference number: 6 (lower is better)
Translates to: GEGSPSGDGLGS*GILANTAAGAP
Trigger: GGGCGCACCCGCAGCTGTGTTAGCCAGGATCCCCCAAGAGCCAAGACCGTCTCCGGAAGGTGACCCTTCCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS CCA 72 bp GTGGAGAGCCGAGGTCTGATAGACGCTGGCAGCGACTaGCGCTTCTTGAGGTTCCGTTCGCGGGCCAGGGCG +
Preference number: 6 (lower is better)
Translates to: VESRGLIDAGSD*RFLRFRSRARA
Trigger: CGCCCTGGCCCGCGAACGGAACCTCAAGAAGCGCCAGTCGCTGCCAGCGTCTATCAGACCTCGGCTCTCCAC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS CCA 72 bp CGCTCCTGTTCTTCGCGTTCCCTCTGTTCCCGAGCCTaGCGCCGCTTTTCAGCCAGGAGCCGCGTGGCTTCC +
Preference number: 6 (lower is better)
Translates to: RSCSSRSLCSRA*RRFSARSRVAS
Trigger: GGAAGCCACGCGGCTCCTGGCTGAAAAGCGGCGCCAGGCTCGGGAACAGAGGGAACGCGAAGAACAGGAGCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS CCA 72 bp TGCAGGCTGCGATTGGTCTTACGTCCAGGGGAGCTGTaGTGCAGGGCCCCTGCCCAGGACCAGCGCTGTTGC +
Preference number: 6 (lower is better)
Translates to: CRLRLVLRPGEL*CRAPAQDQRCC
Trigger: GCAACAGCGCTGGTCCTGGGCAGGGGCCCTGCACCACAGCTCCCCTGGACGTAAGACCAATCGCAGCCTGCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000125981.8
CDS CAA 72 bp GTGGCTTCCTCTCGGTCTGTGGTGCCCGCCATGGGTTaGCTAGGGGTCACCGAGGGAGCAGCGGTAGGAGGG +
Preference number: 6 (lower is better)
Translates to: VASSRSVVPAMG*LGVTEGAAVGG
Trigger: CCCTCCTACCGCTGCTCCCTCGGTGACCCCTAGCAAACCCATGGCGGGCACCACAGACCGAGAGGAAGCCAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS CAA 90 bp GCCCGGGCTTCAGCCTCCCGGGCCAGCTGCTCCTCTCGCATTCGCTaGTCCCTTTCAGCCTGCAGCTTCCGCTCCTGTTCTTCGCGTTCC +
Preference number: 6 (lower is better)
Translates to: ARASASRASCSSRIR*SLSACSFRSCSSRS
Trigger: GGAACGCGAAGAACAGGAGCGGAAGCTGCAGGCTGAAAGGGACAAGCGAATGCGAGAGGAGCAGCTGGCCCGGGAGGCTGAAGCCCGGGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS GCA 72 bp CGCTGCTCCTCCAGCCGTCGGCGGCGCTCCTGGAGTTaGTTTTCCCGGAGCGCCTTGGCTTTTTCCTCCTTC +
Preference number: 6 (lower is better)
Translates to: RCSSSRRRRSWS*FSRSALAFSSF
Trigger: GAAGGAGGAAAAAGCCAAGGCGCTCCGGGAAAAGCAACTCCAGGAGCGCCGCCGACGGCTGGAGGAGCAGCG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS GCA 72 bp TCACGTTCAGCCCGGGCTTCAGCCTCCCGGGCCAGCTaGTCCTCTCGCATTCGCTTGTCCCTTTCAGCCTGC +
Preference number: 6 (lower is better)
Translates to: SRSARASASRAS*SSRIRLSLSAC
Trigger: GCAGGCTGAAAGGGACAAGCGAATGCGAGAGGAGCAGCTGGCCCGGGAGGCTGAAGCCCGGGCTGAACGTGA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS CAA 72 bp GCGGAGGAGGGGAAGGGTCACCTTCCGGAGACGGTCTaGGCTCTTGGGGGATCCTGGCTAACACAGCTGCGG +
Preference number: 6 (lower is better)
Translates to: AEEGKGHLPETV*ALGGSWLTQLR
Trigger: CCGCAGCTGTGTTAGCCAGGATCCCCCAAGAGCCAAGACCGTCTCCGGAAGGTGACCCTTCCCCTCCTCCGC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS CAA 72 bp CCGCTGCTCCTCCAGCCGTCGGCGGCGCTCCTGGAGTaGCTTTTCCCGGAGCGCCTTGGCTTTTTCCTCCTT +
Preference number: 6 (lower is better)
Translates to: PLLLQPSAALLE*LFPERLGFFLL
Trigger: AAGGAGGAAAAAGCCAAGGCGCTCCGGGAAAAGCAACTCCAGGAGCGCCGCCGACGGCTGGAGGAGCAGCGG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS TCA 72 bp AGGAGGTGTGTCTGGGGGAGTGTCAGGAACCAAGGCTaGCATCGGTGTTGGCGGCGGAGGAGGGGAAGGGTC +
Preference number: 6 (lower is better)
Translates to: RRCVWGSVRNQG*HRCWRRRRGRV
Trigger: GACCCTTCCCCTCCTCCGCCGCCAACACCGATGTCAGCCTTGGTTCCTGACACTCCCCCAGACACACCTCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS GCA 72 bp GGGGAGAAGCCGTTCTCCTGGTGCGCTGGGAGAGGCTaGAGGCCATTTACCAGGGACCCTGGCATCTCCTTG +
Preference number: 6 (lower is better)
Translates to: GEKPFSWCAGRG*RPFTRDPGISL
Trigger: CAAGGAGATGCCAGGGTCCCTGGTAAATGGCCTGCAGCCTCTCCCAGCGCACCAGGAGAACGGCTTCTCCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS CCA 72 bp TTAAGCCGCTGCTCCTCCAGCCGTCGGCGGCGCTCCTaGAGTTGCTTTTCCCGGAGCGCCTTGGCTTTTTCC +
Preference number: 6 (lower is better)
Translates to: LSRCSSSRRRRS*SCFSRSALAFS
Trigger: GGAAAAAGCCAAGGCGCTCCGGGAAAAGCAACTCCAGGAGCGCCGCCGACGGCTGGAGGAGCAGCGGCTTAA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS CCA 72 bp GGTTCCCTTTGGGGAGAAGCCGTTCTCCTGGTGCGCTaGGAGAGGCTGCAGGCCATTTACCAGGGACCCTGG +
Preference number: 6 (lower is better)
Translates to: GSLWGEAVLLVR*ERLQAIYQGPW
Trigger: CCAGGGTCCCTGGTAAATGGCCTGCAGCCTCTCCCAGCGCACCAGGAGAACGGCTTCTCCCCAAAGGGAACC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS CCA 72 bp TCCCCAGCGGTTCCCTTTGGGGAGAAGCCGTTCTCCTaGTGCGCTGGGAGAGGCTGCAGGCCATTTACCAGG +
Preference number: 6 (lower is better)
Translates to: SPAVPFGEKPFS*CAGRGCRPFTR
Trigger: CCTGGTAAATGGCCTGCAGCCTCTCCCAGCGCACCAGGAGAACGGCTTCTCCCCAAAGGGAACCGCTGGGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS CCA 72 bp TGTGCGACCCAGACTCTTGTCCCCAGCGGTTCCCTTTaGGGAGAAGCCGTTCTCCTGGTGCGCTGGGAGAGG +
Preference number: 6 (lower is better)
Translates to: CATQTLVPSGSL*GEAVLLVRWER
Trigger: CCTCTCCCAGCGCACCAGGAGAACGGCTTCTCCCCAAAGGGAACCGCTGGGGACAAGAGTCTGGGTCGCACA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS CAA 72 bp CGAGGTCTGATAGACGCTGGCAGCGACTGGCGCTTCTaGAGGTTCCGTTCGCGGGCCAGGGCGCTCTTTTCC +
Preference number: 6 (lower is better)
Translates to: RGLIDAGSDWRF*RFRSRARALFS
Trigger: GGAAAAGAGCGCCCTGGCCCGCGAACGGAACCTCAAGAAGCGCCAGTCGCTGCCAGCGTCTATCAGACCTCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS CAA 72 bp CTGTGCGACCCAGACTCTTGTCCCCAGCGGTTCCCTTaGGGGAGAAGCCGTTCTCCTGGTGCGCTGGGAGAG +
Preference number: 6 (lower is better)
Translates to: LCDPDSCPQRFP*GRSRSPGALGE
Trigger: CTCTCCCAGCGCACCAGGAGAACGGCTTCTCCCCAAAGGGAACCGCTGGGGACAAGAGTCTGGGTCGCACAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS CAA 90 bp GAGGTGTGTCTGGGGGAGTGTCAGGAACCAAGGCTGACATCGGTGTaGGCGGCGGAGGAGGGGAAGGGTCACCTTCCGGAGACGGTCTTG +
Preference number: 6 (lower is better)
Translates to: EVCLGECQEPRLTSV*AAEEGKGHLPETVL
Trigger: CAAGACCGTCTCCGGAAGGTGACCCTTCCCCTCCTCCGCCGCCAACACCGATGTCAGCCTTGGTTCCTGACACTCCCCCAGACACACCTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS CAA 90 bp TCCAGCCGTCGGCGGCGCTCCTGGAGTTGCTTTTCCCGGAGCGCCTaGGCTTTTTCCTCCTTCTCCAACCACACTGCCTTCTTGGCCGCC +
Preference number: 6 (lower is better)
Translates to: SSRRRRSWSCFSRSA*AFSSFSNHTAFLAA
Trigger: GGCGGCCAAGAAGGCAGTGTGGTTGGAGAAGGAGGAAAAAGCCAAGGCGCTCCGGGAAAAGCAACTCCAGGAGCGCCGCCGACGGCTGGA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS CAA 90 bp GGCTTTAAGCCGCTGCTCCTCCAGCCGTCGGCGGCGCTCCTGGAGTaGCTTTTCCCGGAGCGCCTTGGCTTTTTCCTCCTTCTCCAACCA +
Preference number: 6 (lower is better)
Translates to: GFKPLLLQPSAALLE*LFPERLGFFLLLQP
Trigger: TGGTTGGAGAAGGAGGAAAAAGCCAAGGCGCTCCGGGAAAAGCAACTCCAGGAGCGCCGCCGACGGCTGGAGGAGCAGCGGCTTAAAGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS TCA 72 bp GGACGGGCATTCTTCCTGTGGGGGAGCTGGCTGAGGTaGGATCTGCCCTGTGGGATTCCCTGGTTCCAGTGG +
Preference number: 6 (lower is better)
Translates to: GRAFFLWGSWLR*DLPCGIPWFQW
Trigger: CCACTGGAACCAGGGAATCCCACAGGGCAGATCTCACCTCAGCCAGCTCCCCCACAGGAAGAATGCCCGTCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS GCA 72 bp GAAGGCTTCTGCCTCTGCAAATGGGAGGAGCCCCTCTaGTGTGCGACCCAGACTCTTGTCCCCAGCGGTTCC +
Preference number: 6 (lower is better)
Translates to: EGFCLCKWEEPL*CATQTLVPSGS
Trigger: GGAACCGCTGGGGACAAGAGTCTGGGTCGCACAGCAGAGGGGCTCCTCCCATTTGCAGAGGCAGAAGCCTTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS CAA 72 bp TCAGCCTCCCGGGCCAGCTGCTCCTCTCGCATTCGCTaGTCCCTTTCAGCCTGCAGCTTCCGCTCCTGTTCT +
Preference number: 6 (lower is better)
Translates to: SASRASCSSRIR*SLSACSFRSCS
Trigger: AGAACAGGAGCGGAAGCTGCAGGCTGAAAGGGACAAGCGAATGCGAGAGGAGCAGCTGGCCCGGGAGGCTGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS CAA 90 bp GTGGAGAGCCGAGGTCTGATAGACGCTGGCAGCGACTGGCGCTTCTaGAGGTTCCGTTCGCGGGCCAGGGCGCTCTTTTCCTTCTCGTTT +
Preference number: 6 (lower is better)
Translates to: VESRGLIDAGSDWRF*RFRSRARALFSFSF
Trigger: AAACGAGAAGGAAAAGAGCGCCCTGGCCCGCGAACGGAACCTCAAGAAGCGCCAGTCGCTGCCAGCGTCTATCAGACCTCGGCTCTCCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS GCA 72 bp CTTCTGCCTCTGCAAATGGGAGGAGCCCCTCTGCTGTaGGACCCAGACTCTTGTCCCCAGCGGTTCCCTTTG +
Preference number: 6 (lower is better)
Translates to: LLPLQMGGAPLL*DPDSCPQRFPL
Trigger: CAAAGGGAACCGCTGGGGACAAGAGTCTGGGTCGCACAGCAGAGGGGCTCCTCCCATTTGCAGAGGCAGAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS GCA 72 bp AGGAGAGGGTGGGCGTCATCAGACGATCCACAATGCTaGTCTCCCATGCGCTCAGCTGCAGGCTGCGATGTC +
Preference number: 6 (lower is better)
Translates to: RRGWASSDDPQC*SPMRSAAGCDV
Trigger: GACATCGCAGCCTGCAGCTGAGCGCATGGGAGAGCAGCATTGTGGATCGTCTGATGACGCCCACCCTCTCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106132.3
CDS GCA 72 bp AGGAGAGGGTGGGCGTCATCAGACGATCCACAATGCTaGTCTCCCATGCGCTCAGCTGCAGGCTGCGATTGG +
Preference number: 6 (lower is better)
Translates to: RRGWASSDDPQC*SPMRSAAGCDW
Trigger: CCAATCGCAGCCTGCAGCTGAGCGCATGGGAGAGCAGCATTGTGGATCGTCTGATGACGCCCACCCTCTCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125981.8
CDS GCA 72 bp AGGAGAGGGTGGGCGTCATCAGACGATCCACAATGCTaGTCTCCCATGCGCTCAGCTGCAGGCTGCGATTTC +
Preference number: 6 (lower is better)
Translates to: RRGWASSDDPQC*SPMRSAAGCDF
Trigger: GAAATCGCAGCCTGCAGCTGAGCGCATGGGAGAGCAGCATTGTGGATCGTCTGATGACGCCCACCCTCTCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000122129.8
CDS CCA 72 bp GGCGGCGCTCCTGGAGTTGCTTTTCCCGGAGCGCCTTaGCTTTTTCCTCCTTCTCCAACCACACTGCCTTCT +
Preference number: 6 (lower is better)
Translates to: GGAPGVAFPGAP*LFPPSPTTLPS
Trigger: AGAAGGCAGTGTGGTTGGAGAAGGAGGAAAAAGCCAAGGCGCTCCGGGAAAAGCAACTCCAGGAGCGCCGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS CAA 90 bp GCCGCCAGGTACTTGGCCCGCTCTTCTCGGCGCTCTTTGGCAAGCTaGTGTCTCTCTCCTGCCTTCTTTACATCTTGCTTGGCAGGAGGG +
Preference number: 6 (lower is better)
Translates to: AARYLARSSRRSLAS*CLSPAFFTSCLAGG
Trigger: CCCTCCTGCCAAGCAAGATGTAAAGAAGGCAGGAGAGAGACACAAGCTTGCCAAAGAGCGCCGAGAAGAGCGGGCCAAGTACCTGGCGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS CAA 90 bp CCAGAGGGCCGAGTCTCTACAGCTTTCACAGGGTCTGGGCCGGAATaGTTAGCTGCGGTCTCCTTTGCATCCTGCTTCTTGGTTTCGGCG +
Preference number: 6 (lower is better)
Translates to: PEGRVSTAFTGSGPE*LAAVSFASCFLVSA
Trigger: CGCCGAAACCAAGAAGCAGGATGCAAAGGAGACCGCAGCTAACAATTCCGGCCCAGACCCTGTGAAAGCTGTAGAGACTCGGCCCTCTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS GCA 72 bp ATCTGCCCTGTGGGATTCCCTGGTTCCAGTGGGAGCTaGTTAGGATTCGTGGCAGTCTTCAGGGCAGGAGGT +
Preference number: 6 (lower is better)
Translates to: ICPVGFPGSSGS*LGFVAVFRAGG
Trigger: ACCTCCTGCCCTGAAGACTGCCACGAATCCTAAGCAGCTCCCACTGGAACCAGGGAATCCCACAGGGCAGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS GCA 72 bp AGCTGCTCCTCTCGCATTCGCTTGTCCCTTTCAGCCTaGAGCTTCCGCTCCTGTTCTTCGCGTTCCCTCTGT +
Preference number: 6 (lower is better)
Translates to: SCSSRIRLSLSA*SFRSCSSRSLC
Trigger: ACAGAGGGAACGCGAAGAACAGGAGCGGAAGCTGCAGGCTGAAAGGGACAAGCGAATGCGAGAGGAGCAGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS CCA 72 bp CCCAGAGGGCCGAGTCTCTACAGCTTTCACAGGGTCTaGGCCGGAATTGTTAGCTGCGGTCTCCTTTGCATC +
Preference number: 6 (lower is better)
Translates to: PRGPSLYSFHRV*AGIVSCGLLCI
Trigger: GATGCAAAGGAGACCGCAGCTAACAATTCCGGCCCAGACCCTGTGAAAGCTGTAGAGACTCGGCCCTCTGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS TCA 72 bp GCGCTGTTGCCGGATCTCAGCCCACGTCTTCTTCACTaGCCGCTGGATTGCTGCTTCATAGCGCTCCTTGTT +
Preference number: 6 (lower is better)
Translates to: ALLPDLSPRLLH*PLDCCFIALLV
Trigger: AACAAGGAGCGCTATGAAGCAGCAATCCAGCGGTCAGTGAAGAAGACGTGGGCTGAGATCCGGCAACAGCGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS CAA 90 bp GCAGAGGACTTTGAGAGCCGCTTGTTGATTATAGAGTCCACGTGTTaGGGCAGGTTTACTGCCGACACGGAGCACCTGCTCCCACTGGTC +
Preference number: 6 (lower is better)
Translates to: AEDFESRLLIIESTC*GRFTADTEHLLPLV
Trigger: GACCAGTGGGAGCAGGTGCTCCGTGTCGGCAGTAAACCTGCCCAAACACGTGGACTCTATAATCAACAAGCGGCTCTCAAAGTCCTCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000122129.8
CDS CAA 90 bp CTGGGGGAGTTCCAGAGCGTGGCAGAGGACTTTGAGAGCCGCTTGTaGATTATAGAGTCCACGTGTTTGGGCAGGTTTACTGCCGACACG +
Preference number: 6 (lower is better)
Translates to: LGEFQSVAEDFESRL*IIESTCLGRFTADT
Trigger: CGTGTCGGCAGTAAACCTGCCCAAACACGTGGACTCTATAATCAACAAGCGGCTCTCAAAGTCCTCTGCCACGCTCTGGAACTCCCCCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000122129.8
CDS GCA 72 bp GGGCCGGAATTGTTAGCTGCGGTCTCCTTTGCATCCTaGTTCTTGGTTTCGGCGGCTTCTGATTTCCGAGTC +
Preference number: 6 (lower is better)
Translates to: GPELLAAVSFAS*FLVSAASDFRV
Trigger: GACTCGGAAATCAGAAGCCGCCGAAACCAAGAAGCAGGATGCAAAGGAGACCGCAGCTAACAATTCCGGCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS CAA 72 bp ACTTCTGTGACCTGTGGAGGCTGCACCACTGCTTTCTaGAGGAAGGCTTCTGCCTCTGCAAATGGGAGGAGC +
Preference number: 6 (lower is better)
Translates to: TSVTCGGCTTAF*RKASASANGRS
Trigger: GCTCCTCCCATTTGCAGAGGCAGAAGCCTTCCTCAAGAAAGCAGTGGTGCAGCCTCCACAGGTCACAGAAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS CAA 90 bp CTACTGGGGGAGTTCCAGAGCGTGGCAGAGGACTTTGAGAGCCGCTaGTTGATTATAGAGTCCACGTGTTTGGGCAGGTTTACTGCCGAC +
Preference number: 6 (lower is better)
Translates to: LLGEFQSVAEDFESR*LIIESTCLGRFTAD
Trigger: GTCGGCAGTAAACCTGCCCAAACACGTGGACTCTATAATCAACAAGCGGCTCTCAAAGTCCTCTGCCACGCTCTGGAACTCCCCCAGTAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000122129.8
CDS GCA 72 bp TTCTCGGCGCTCTTTGGCAAGCTTGTGTCTCTCTCCTaGCTTCTTTACATCTTGCTTGGCAGGAGGGCTGTC +
Preference number: 6 (lower is better)
Translates to: FSALFGKLVSLS*LLYILLGRRAV
Trigger: GACAGCCCTCCTGCCAAGCAAGATGTAAAGAAGGCAGGAGAGAGACACAAGCTTGCCAAAGAGCGCCGAGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS GCA 72 bp TACAGCTTTCACAGGGTCTGGGCCGGAATTGTTAGCTaGGGTCTCCTTTGCATCCTGCTTCTTGGTTTCGGC +
Preference number: 6 (lower is better)
Translates to: YSFHRVWAGIVS*GLLCILLLGFG
Trigger: GCCGAAACCAAGAAGCAGGATGCAAAGGAGACCGCAGCTAACAATTCCGGCCCAGACCCTGTGAAAGCTGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS CAA 72 bp CGAGTCTCTACAGCTTTCACAGGGTCTGGGCCGGAATaGTTAGCTGCGGTCTCCTTTGCATCCTGCTTCTTG +
Preference number: 6 (lower is better)
Translates to: RVSTAFTGSGPE*LAAVSFASCFL
Trigger: CAAGAAGCAGGATGCAAAGGAGACCGCAGCTAACAATTCCGGCCCAGACCCTGTGAAAGCTGTAGAGACTCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS TCA 72 bp CTCCTTTGCATCCTGCTTCTTGGTTTCGGCGGCTTCTaGTTTCCGAGTCCTCTTCATTATCTCCTCCAGCCG +
Preference number: 6 (lower is better)
Translates to: LLCILLLGFGGF*FPSPLHYLLQP
Trigger: CGGCTGGAGGAGATAATGAAGAGGACTCGGAAATCAGAAGCCGCCGAAACCAAGAAGCAGGATGCAAAGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS CAA 72 bp TTTGAGAGCCGCTTGTTGATTATAGAGTCCACGTGTTaGGGCAGGTTTACTGCCGACACGGAGCACCTGCTC +
Preference number: 6 (lower is better)
Translates to: FESRLLIIESTC*GRFTADTEHLL
Trigger: GAGCAGGTGCTCCGTGTCGGCAGTAAACCTGCCCAAACACGTGGACTCTATAATCAACAAGCGGCTCTCAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000122129.8
CDS CAA 90 bp TCTGGGCCGGAATTGTTAGCTGCGGTCTCCTTTGCATCCTGCTTCTaGGTTTCGGCGGCTTCTGATTTCCGAGTCCTCTTCATTATCTCC +
Preference number: 6 (lower is better)
Translates to: SGPELLAAVSFASCF*VSAASDFRVLFIIS
Trigger: GGAGATAATGAAGAGGACTCGGAAATCAGAAGCCGCCGAAACCAAGAAGCAGGATGCAAAGGAGACCGCAGCTAACAATTCCGGCCCAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS TCA 72 bp TCTACTGGGGGAGTTCCAGAGCGTGGCAGAGGACTTTaGGAGCCGCTTGTTGATTATAGAGTCCACGTGTTT +
Preference number: 6 (lower is better)
Translates to: STGGVPERGRGL*EPLVDYRVHVF
Trigger: AAACACGTGGACTCTATAATCAACAAGCGGCTCTCAAAGTCCTCTGCCACGCTCTGGAACTCCCCCAGTAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000122129.8
CDS CAA 72 bp GGATCTCAGCCCACGTCTTCTTCACTGACCGCTGGATaGCTGCTTCATAGCGCTCCTTGTTTTTCTCAAGCT +
Preference number: 6 (lower is better)
Translates to: GSQPTSSSLTAG*LLHSAPCFSQA
Trigger: AGCTTGAGAAAAACAAGGAGCGCTATGAAGCAGCAATCCAGCGGTCAGTGAAGAAGACGTGGGCTGAGATCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
CDS CAA 72 bp GAGTTCCAGAGCGTGGCAGAGGACTTTGAGAGCCGCTaGTTGATTATAGAGTCCACGTGTTTGGGCAGGTTT +
Preference number: 6 (lower is better)
Translates to: EFQSVAEDFESR*LIIESTCLGRF
Trigger: AAACCTGCCCAAACACGTGGACTCTATAATCAACAAGCGGCTCTCAAAGTCCTCTGCCACGCTCTGGAACTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000122129.8
CDS CAA 72 bp GAATTGTTAGCTGCGGTCTCCTTTGCATCCTGCTTCTaGGTTTCGGCGGCTTCTGATTTCCGAGTCCTCTTC +
Preference number: 6 (lower is better)
Translates to: ELLAAVSFASCF*VSAASDFRVLF
Trigger: GAAGAGGACTCGGAAATCAGAAGCCGCCGAAACCAAGAAGCAGGATGCAAAGGAGACCGCAGCTAACAATTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS GCA 72 bp TTAAAGAACTTCTGTGACCTGTGGAGGCTGCACCACTaGTTTCTTGAGGAAGGCTTCTGCCTCTGCAAATGG +
Preference number: 6 (lower is better)
Translates to: LKNFCDLWRLHH*FLEEGFCLCKW
Trigger: CCATTTGCAGAGGCAGAAGCCTTCCTCAAGAAAGCAGTGGTGCAGCCTCCACAGGTCACAGAAGTTCTTTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061143.15
ENSMUST00000106132.3
ENSMUST00000122129.8
ENSMUST00000125981.8
CDS CAA 72 bp TTCCAGAGCGTGGCAGAGGACTTTGAGAGCCGCTTGTaGATTATAGAGTCCACGTGTTTGGGCAGGTTTACT +
Preference number: 6 (lower is better)
Translates to: FQSVAEDFESRL*IIESTCLGRFT
Trigger: AGTAAACCTGCCCAAACACGTGGACTCTATAATCAACAAGCGGCTCTCAAAGTCCTCTGCCACGCTCTGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061143.15
ENSMUST00000122129.8