Pregenerated sensors for MAP6D1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000041205Ensembl transcript IDs: ENSMUST00000040880.9
Found 127 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GTCTCCCTCCCTGCCACCGCTGGAGGACAGATGGGGAGGCTTGAGTaGAGCTGGTGGTGTCCTGTCCCTTTGCCTCCACACCACGCCATG | + |
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Preference number: 1 (lower is better) Translates to: VSLPATAGGQMGRLE*SWWCPVPLPPHHAM Trigger: CATGGCGTGGTGTGGAGGCAAAGGGACAGGACACCACCAGCTGCACTCAAGCCTCCCCATCTGTCCTCCAGCGGTGGCAGGGAGGGAGAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| 3UTR GCA 90 bp | TGTCCCTTTGCCTCCACACCACGCCATGCCCAGAGCCAGCAGCCATaGTGCTGTAAGCAAAGGAGCAGGCCAGGACTCCGCCTGGTAGGT | + |
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Preference number: 1 (lower is better) Translates to: CPFASTPRHAQSQQP*CCKQRSRPGLRLVG Trigger: ACCTACCAGGCGGAGTCCTGGCCTGCTCCTTTGCTTACAGCAGCATGGCTGCTGGCTCTGGGCATGGCGTGGTGTGGAGGCAAAGGGACA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| 3UTR TCA 90 bp | GGGATGCTGTGTGGGAGGTCTGAGCTGCTTCCTCAGCCATGGCTTTaGAACACCATCAGACCTAGATGCTCCCGTGGGGAGAGCCTGGGA | + |
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Preference number: 1 (lower is better) Translates to: GMLCGRSELLPQPWL*NTIRPRCSRGESLG Trigger: TCCCAGGCTCTCCCCACGGGAGCATCTAGGTCTGATGGTGTTTCAAAGCCATGGCTGAGGAAGCAGCTCAGACCTCCCACACAGCATCCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| 3UTR GCA 90 bp | CTGAGCACTGGAGAGGCAGCAGAGATGGGCAGATCACTTGAGGCTTaGTATACAAGCAGCCTAAGCTACTTGGCGAGCCCTGGGCCAGTG | + |
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Preference number: 1 (lower is better) Translates to: LSTGEAAEMGRSLEA*YTSSLSYLASPGPV Trigger: CACTGGCCCAGGGCTCGCCAAGTAGCTTAGGCTGCTTGTATAGCAAGCCTCAAGTGATCTGCCCATCTCTGCTGCCTCTCCAGTGCTCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| 3UTR GCA 90 bp | GGCCTGCTAGCACCTCTGAGGGGATGCTGTGTGGGAGGTCTGAGCTaGTTCCTCAGCCATGGCTTTGAAACACCATCAGACCTAGATGCT | + |
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Preference number: 1 (lower is better) Translates to: GLLAPLRGCCVGGLS*FLSHGFETPSDLDA Trigger: AGCATCTAGGTCTGATGGTGTTTCAAAGCCATGGCTGAGGAAGCAGCTCAGACCTCCCACACAGCATCCCCTCAGAGGTGCTAGCAGGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| 3UTR CCA 90 bp | GCAGAAGTGGAGTGCTCACTGTCCCTGCCAGTGAGGAAGCAGCAGTaGCACAGATGGCCCCTTTTCCCACTTAAGTATGCAGGAGAGCTG | + |
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Preference number: 1 (lower is better) Translates to: AEVECSLSLPVRKQQ*HRWPLFPLKYAGEL Trigger: CAGCTCTCCTGCATACTTAAGTGGGAAAAGGGGCCATCTGTGCCACTGCTGCTTCCTCACTGGCAGGGACAGTGAGCACTCCACTTCTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| 3UTR GCA 90 bp | GACACTGCTAAACCTCTCAGGCTCTTTCCAGCGCTTGAAGGGGTGTaGAAAGGGGAATGGGCTTGTTCCACACAGACGTGCTGGCTGGAA | + |
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Preference number: 1 (lower is better) Translates to: DTAKPLRLFPALEGV*KGEWACSTQTCWLE Trigger: TTCCAGCCAGCACGTCTGTGTGGAACAAGCCCATTCCCCTTTGCACACCCCTTCAAGCGCTGGAAAGAGCCTGAGAGGTTTAGCAGTGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| 3UTR CCA 90 bp | ACATGTGGTGCGGTCACTAGCAGTGTACAGCTGGAGGCTTTTAGCTaGGGCATGCCAGTGGCTACAGCAGGACCAAAAGGTACCTGGAAG | + |
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Preference number: 1 (lower is better) Translates to: TCGAVTSSVQLEAFS*GMPVATAGPKGTWK Trigger: CTTCCAGGTACCTTTTGGTCCTGCTGTAGCCACTGGCATGCCCCAGCTAAAAGCCTCCAGCTGTACACTGCTAGTGACCGCACCACATGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| 3UTR TCA 90 bp | TCTCACTTTCAGGTGCAGAAGTGGAGTGCTCACTGTCCCTGCCAGTaGGGAAGCAGCAGTGGCACAGATGGCCCCTTTTCCCACTTAAGT | + |
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Preference number: 1 (lower is better) Translates to: SHFQVQKWSAHCPCQ*GSSSGTDGPFSHLS Trigger: ACTTAAGTGGGAAAAGGGGCCATCTGTGCCACTGCTGCTTCCTCACTGGCAGGGACAGTGAGCACTCCACTTCTGCACCTGAAAGTGAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| 3UTR CCA 90 bp | CCTCTCAGGCTCTTTCCAGCGCTTGAAGGGGTGTGCAAAGGGGAATaGGCTTGTTCCACACAGACGTGCTGGCTGGAATTTATGGAGATG | + |
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Preference number: 1 (lower is better) Translates to: PLRLFPALEGVCKGE*ACSTQTCWLEFMEM Trigger: CATCTCCATAAATTCCAGCCAGCACGTCTGTGTGGAACAAGCCCATTCCCCTTTGCACACCCCTTCAAGCGCTGGAAAGAGCCTGAGAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| 3UTR CCA 90 bp | GCCAGTGGCTACAGCAGGACCAAAAGGTACCTGGAAGAGTTAAAGTaGAAAGGACTATTGGGGAGCCATGCTTGGCTGGCTTTCCGGAGG | + |
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Preference number: 1 (lower is better) Translates to: ASGYSRTKRYLEELK*KGLLGSHAWLAFRR Trigger: CCTCCGGAAAGCCAGCCAAGCATGGCTCCCCAATAGTCCTTTCCACTTTAACTCTTCCAGGTACCTTTTGGTCCTGCTGTAGCCACTGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| 3UTR TCA 90 bp | TTAAAATCTGAGCACTGGAGAGGCAGCAGAGATGGGCAGATCACTTaGGGCTTGCTATACAAGCAGCCTAAGCTACTTGGCGAGCCCTGG | + |
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Preference number: 1 (lower is better) Translates to: LKSEHWRGSRDGQIT*GLLYKQPKLLGEPW Trigger: CCAGGGCTCGCCAAGTAGCTTAGGCTGCTTGTATAGCAAGCCTCAAGTGATCTGCCCATCTCTGCTGCCTCTCCAGTGCTCAGATTTTAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| 3UTR GCA 90 bp | CTAACAAGCCAGCAGGGTATAGGTAATAGCAGTCTCACTTTCAGGTaGAGAAGTGGAGTGCTCACTGTCCCTGCCAGTGAGGAAGCAGCA | + |
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Preference number: 1 (lower is better) Translates to: LTSQQGIGNSSLTFR*RSGVLTVPASEEAA Trigger: TGCTGCTTCCTCACTGGCAGGGACAGTGAGCACTCCACTTCTGCACCTGAAAGTGAGACTGCTATTACCTATACCCTGCTGGCTTGTTAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| 3UTR CCA 90 bp | AGGGCAGGGTTTCATTCCTCAGGAGGACTGGTGAGAAGAGCTTTGTaGCACACTGCTGAGGTCATGCATCTCTACACCAAGAGTGAATGC | + |
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Preference number: 1 (lower is better) Translates to: RAGFHSSGGLVRRAL*HTAEVMHLYTKSEC Trigger: GCATTCACTCTTGGTGTAGAGATGCATGACCTCAGCAGTGTGCCACAAAGCTCTTCTCACCAGTCCTCCTGAGGAATGAAACCCTGCCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| 3UTR TCA 90 bp | GTGCACATTGTGTGTAAGGTGGACTCAGAACTAAGAGAACAAGGCTaGCATTGGCCTTGGTGGCTTCTTGGTTGTTCGTGGAACCATGTG | + |
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Preference number: 1 (lower is better) Translates to: VHIVCKVDSELREQG*HWPWWLLGCSWNHV Trigger: CACATGGTTCCACGAACAACCAAGAAGCCACCAAGGCCAATGTCAGCCTTGTTCTCTTAGTTCTGAGTCCACCTTACACACAATGTGCAC 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| 3UTR GCA 90 bp | CCACTTAAGTATGCAGGAGAGCTGAAGTGGAAAGAAGGTAACACCTaGAACACTGGAAGCATCTGCAGCTCTGAGCAAGAAGGGTTTGGA | + |
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Preference number: 1 (lower is better) Translates to: PLKYAGELKWKEGNT*NTGSICSSEQEGFG Trigger: TCCAAACCCTTCTTGCTCAGAGCTGCAGATGCTTCCAGTGTTGCAGGTGTTACCTTCTTTCCACTTCAGCTCTCCTGCATACTTAAGTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| 3UTR CCA 90 bp | GGCTTTGAAACACCATCAGACCTAGATGCTCCCGTGGGGAGAGCCTaGGAAGAAAAGAACCACAAGGAAGTCCTTATAGTTCTTACCAGA | + |
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Preference number: 1 (lower is better) Translates to: GFETPSDLDAPVGRA*EEKNHKEVLIVLTR Trigger: TCTGGTAAGAACTATAAGGACTTCCTTGTGGTTCTTTTCTTCCCAGGCTCTCCCCACGGGAGCATCTAGGTCTGATGGTGTTTCAAAGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| 3UTR GCA 90 bp | AGGGTACCTGAAGAATACTCTGAGTTGTCCTCTGTCCTCTACACGTaGCTGCACATACATGAACACACATCCCCATATATACAGGAATAC | + |
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Preference number: 1 (lower is better) Translates to: RVPEEYSELSSVLYT*LHIHEHTSPYIQEY Trigger: GTATTCCTGTATATATGGGGATGTGTGTTCATGTATGTGCAGGCACGTGTAGAGGACAGAGGACAACTCAGAGTATTCTTCAGGTACCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| 3UTR TCA 90 bp | TACACACGTACATATAACGCCATATACACACTCCTTTCTCAGAGATaGGCCCTGCTCATCCTCCAGTGTATTTTTCTGGTCTTTGTGCAC | + |
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Preference number: 1 (lower is better) Translates to: YTRTYNAIYTLLSQR*ALLILQCIFLVFVH Trigger: GTGCACAAAGACCAGAAAAATACACTGGAGGATGAGCAGGGCTCATCTCTGAGAAAGGAGTGTGTATATGGCGTTATATGTACGTGTGTA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| 3UTR TCA 90 bp | GGAGCTGTTCAGGTCACAGCTGAATTGATCGTCAGATTTAAGAAGTaGAGGATGTCAGATGGCAATTTAGAAGACAAGAAAGTCTCCCTC | + |
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Preference number: 1 (lower is better) Translates to: GAVQVTAELIVRFKK*RMSDGNLEDKKVSL Trigger: GAGGGAGACTTTCTTGTCTTCTAAATTGCCATCTGACATCCTTCACTTCTTAAATCTGACGATCAATTCAGCTGTGACCTGAACAGCTCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| 3UTR GCA 90 bp | GTACATATAACGCCATATACACACTCCTTTCTCAGAGATGAGCCCTaGTCATCCTCCAGTGTATTTTTCTGGTCTTTGTGCACATTGTGT | + |
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Preference number: 1 (lower is better) Translates to: VHITPYTHSFLRDEP*SSSSVFFWSLCTLC Trigger: ACACAATGTGCACAAAGACCAGAAAAATACACTGGAGGATGAGCAGGGCTCATCTCTGAGAAAGGAGTGTGTATATGGCGTTATATGTAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| 3UTR GCA 90 bp | ACAAGTTGCTGCAGCACATTTTTGCATTTTAGTAAATTGTTAATCTaGCCAGCAGGCAATCGTTTCCCTCTTAGGAACACTGAGCATGCA | + |
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Preference number: 1 (lower is better) Translates to: TSCCSTFLHFSKLLI*PAGNRFPLRNTEHA Trigger: TGCATGCTCAGTGTTCCTAAGAGGGAAACGATTGCCTGCTGGGCAGATTAACAATTTACTAAAATGCAAAAATGTGCTGCAGCAACTTGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| 3UTR CCA 90 bp | GAGTTCAAGGATATTAGCGAAGCTACACTATATTACGGCCATTTTTaGGAGGCTACAGGGATGGGAAAGAATATGCCTGTGTTTATAACA | + |
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Preference number: 1 (lower is better) Translates to: EFKDISEATLYYGHF*EATGMGKNMPVFIT Trigger: TGTTATAAACACAGGCATATTCTTTCCCATCCCTGTAGCCTCCCAAAAATGGCCGTAATATAGTGTAGCTTCGCTAATATCCTTGAACTC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| 3UTR CCA 90 bp | AAACAGGATCTTAGCTATAAAGAAATTACATGGTTGAGATTGACATaGATGATCTCCCTAGACACACATCACTACCATGAGAGTTGTGTG | + |
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Preference number: 1 (lower is better) Translates to: KQDLSYKEITWLRLT*MISLDTHHYHESCV Trigger: CACACAACTCTCATGGTAGTGATGTGTGTCTAGGGAGATCATCCATGTCAATCTCAACCATGTAATTTCTTTATAGCTAAGATCCTGTTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| 3UTR TCA 90 bp | GTTGAGATTGACATGGATGATCTCCCTAGACACACATCACTACCATaGGAGTTGTGTGCGAGTAATTATATATTAAAACACACACACAAA | + |
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Preference number: 1 (lower is better) Translates to: VEIDMDDLPRHTSLP*ELCASNYILKHTHK Trigger: TTTGTGTGTGTGTTTTAATATATAATTACTCGCACACAACTCTCATGGTAGTGATGTGTGTCTAGGGAGATCATCCATGTCAATCTCAAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| 3UTR CAA 90 bp | AGAAAGTCTCCCTCCCTGCCACCGCTGGAGGACAGATGGGGAGGCTaGAGTGCAGCTGGTGGTGTCCTGTCCCTTTGCCTCCACACCACG | + |
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Preference number: 2 (lower is better) Translates to: RKSPSLPPLEDRWGG*SAAGGVLSLCLHTT Trigger: CGTGGTGTGGAGGCAAAGGGACAGGACACCACCAGCTGCACTCAAGCCTCCCCATCTGTCCTCCAGCGGTGGCAGGGAGGGAGACTTTCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| 3UTR-3UTR GCA 90 bp | GCTAGCACCTCTGAGGGGATGCTGTGTGGGAGGTCTGAGCTGCTTCCTCAGCCAATGGGGAGGCTTGAGTaGAGCTGGTGGTGTCCTGTC | + |
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Preference number: 2 (lower is better) Translates to: ASTSEGMLCGRSELLPQPMGRLE*SWWCPV Trigger: GACAGGACACCACCAGCTGCACTCAAGCCTCCCCAT...TGGCTGAGGAAGCAGCTCAGACCTCCCACACAGCATCCCCTCAGAGGTGCTAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| 3UTR-3UTR GCA 90 bp | AGCACCTCTGAGGGGATGCTGTGTGGGAGGTCTGAGCTGCTTCCTCAGCCATGGAGCCAGCAGCCATGCTaGTGTAAGCAAAGGAGCAGG | + |
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Preference number: 2 (lower is better) Translates to: STSEGMLCGRSELLPQPWSQQPC*CKQRSR Trigger: CCTGCTCCTTTGCTTACAGCAGCATGGCTGCTGGCT...CCATGGCTGAGGAAGCAGCTCAGACCTCCCACACAGCATCCCCTCAGAGGTGCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| 3UTR-3UTR TCA 90 bp | GCACTGGAGAGGCAGCAGAGATGGGCAGATCACTTGAGGCTTGCTATACAAGCACACTGTCCCTGCCAGTaGGGAAGCAGCAGTGGCACA | + |
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Preference number: 2 (lower is better) Translates to: ALERQQRWADHLRLAIQAHCPCQ*GSSSGT Trigger: TGTGCCACTGCTGCTTCCTCACTGGCAGGGACAGTG...TGCTTGTATAGCAAGCCTCAAGTGATCTGCCCATCTCTGCTGCCTCTCCAGTGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| 3UTR-3UTR CCA 90 bp | CCTAAGCTACTTGGCGAGCCCTGGGCCAGTGAGAAAAATGAAGGGTACCTGAAGTTGGGGAGCCATGCTTaGCTGGCTTTCCGGAGGATG | + |
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Preference number: 2 (lower is better) Translates to: PKLLGEPWASEKNEGYLKLGSHA*LAFRRM Trigger: CATCCTCCGGAAAGCCAGCCAAGCATGGCTCCCCAA...CTTCAGGTACCCTTCATTTTTCTCACTGGCCCAGGGCTCGCCAAGTAGCTTAGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| 3UTR-3UTR TCA 90 bp | TGCAACACTGGAAGCATCTGCAGCTCTGAGCAAGAAGGGTTTGGAGTTCAAGGAACAGATGGGGAGGCTTaGGTGCAGCTGGTGGTGTCC | + |
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Preference number: 2 (lower is better) Translates to: CNTGSICSSEQEGFGVQGTDGEA*VQLVVS Trigger: GGACACCACCAGCTGCACTCAAGCCTCCCCATCTGT...TCCTTGAACTCCAAACCCTTCTTGCTCAGAGCTGCAGATGCTTCCAGTGTTGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| 3UTR-3UTR CCA 90 bp | GCACTGGAGAGGCAGCAGAGATGGGCAGATCACTTGAGGCTTGCTATACAAGCAAGGCTTGAGTGCAGCTaGTGGTGTCCTGTCCCTTTG | + |
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Preference number: 2 (lower is better) Translates to: ALERQQRWADHLRLAIQARLECS*WCPVPL Trigger: CAAAGGGACAGGACACCACCAGCTGCACTCAAGCCT...TGCTTGTATAGCAAGCCTCAAGTGATCTGCCCATCTCTGCTGCCTCTCCAGTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| 3UTR-3UTR CCA 90 bp | CCTAAGCTACTTGGCGAGCCCTGGGCCAGTGAGAAAAATGAAGGGTACCTGAAGCCCGTGGGGAGAGCCTaGGAAGAAAAGAACCACAAG | + |
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Preference number: 2 (lower is better) Translates to: PKLLGEPWASEKNEGYLKPVGRA*EEKNHK Trigger: CTTGTGGTTCTTTTCTTCCCAGGCTCTCCCCACGGG...CTTCAGGTACCCTTCATTTTTCTCACTGGCCCAGGGCTCGCCAAGTAGCTTAGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| 3UTR-3UTR CCA 90 bp | GCACTGGAGAGGCAGCAGAGATGGGCAGATCACTTGAGGCTTGCTATACAAGCAAGTGAATGCAGGGGGTaGGGTTGCTGGACATGTGGT | + |
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Preference number: 2 (lower is better) Translates to: ALERQQRWADHLRLAIQASECRG*GCWTCG Trigger: ACCACATGTCCAGCAACCCCACCCCCTGCATTCACT...TGCTTGTATAGCAAGCCTCAAGTGATCTGCCCATCTCTGCTGCCTCTCCAGTGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| 3UTR-3UTR CCA 90 bp | AGCCCTGGCTCTCCAGGAACTTGCTATGTAGACCAGGAAGGCAATGAGTTCAGACTTGAGTGCAGCTGGTaGTGTCCTGTCCCTTTGCCT | + |
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Preference number: 2 (lower is better) Translates to: SPGSPGTCYVDQEGNEFRLECSW*CPVPLP Trigger: AGGCAAAGGGACAGGACACCACCAGCTGCACTCAAG...TCTGAACTCATTGCCTTCCTGGTCTACATAGCAAGTTCCTGGAGAGCCAGGGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| 3UTR CAA 90 bp | AGTTCTTACCAGACACTGCTAAACCTCTCAGGCTCTTTCCAGCGCTaGAAGGGGTGTGCAAAGGGGAATGGGCTTGTTCCACACAGACGT | + |
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Preference number: 2 (lower is better) Translates to: SSYQTLLNLSGSFQR*KGCAKGNGLVPHRR Trigger: ACGTCTGTGTGGAACAAGCCCATTCCCCTTTGCACACCCCTTCAAGCGCTGGAAAGAGCCTGAGAGGTTTAGCAGTGTCTGGTAAGAACT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| 3UTR-3UTR TCA 90 bp | GCACTGGAGAGGCAGCAGAGATGGGCAGATCACTTGAGGCTTGCTATACAAGCAAAGCATCTGCAGCTCTaGGCAAGAAGGGTTTGGAGT | + |
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Preference number: 2 (lower is better) Translates to: ALERQQRWADHLRLAIQAKHLQL*ARRVWS Trigger: ACTCCAAACCCTTCTTGCTCAGAGCTGCAGATGCTT...TGCTTGTATAGCAAGCCTCAAGTGATCTGCCCATCTCTGCTGCCTCTCCAGTGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| 3UTR-3UTR GCA 90 bp | GCACTGGAGAGGCAGCAGAGATGGGCAGATCACTTGAGGCTTGCTATACAAGCAAACACTGGAAGCATCTaGAGCTCTGAGCAAGAAGGG | + |
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Preference number: 2 (lower is better) Translates to: ALERQQRWADHLRLAIQANTGSI*SSEQEG Trigger: CCCTTCTTGCTCAGAGCTGCAGATGCTTCCAGTGTT...TGCTTGTATAGCAAGCCTCAAGTGATCTGCCCATCTCTGCTGCCTCTCCAGTGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| 3UTR-3UTR CCA 90 bp | CCACATAAAAATGGCAGGCATGGTGGTGCACACTTAAAATCTGAGCACTGGAGAAGGGGGTGGGGTTGCTaGACATGTGGTGCGGTCACT | + |
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Preference number: 2 (lower is better) Translates to: PHKNGRHGGAHLKSEHWRRGWGC*TCGAVT Trigger: AGTGACCGCACCACATGTCCAGCAACCCCACCCCCT...TCTCCAGTGCTCAGATTTTAAGTGTGCACCACCATGCCTGCCATTTTTATGTGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| 3UTR CAA 90 bp | GTACCTGGAAGAGTTAAAGTGGAAAGGACTATTGGGGAGCCATGCTaGGCTGGCTTTCCGGAGGATGTCCTAACAAGCCAGCAGGGTATA | + |
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Preference number: 2 (lower is better) Translates to: VPGRVKVERTIGEPC*AGFPEDVLTSQQGI Trigger: TATACCCTGCTGGCTTGTTAGGACATCCTCCGGAAAGCCAGCCAAGCATGGCTCCCCAATAGTCCTTTCCACTTTAACTCTTCCAGGTAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| 3UTR-3UTR TCA 90 bp | AGCACCTCTGAGGGGATGCTGTGTGGGAGGTCTGAGCTGCTTCCTCAGCCATGGAGATTTTTGTTGTTTTaGAATTGGGTGTGTAGCCCT | + |
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Preference number: 2 (lower is better) Translates to: STSEGMLCGRSELLPQPWRFLLF*NWVCSP Trigger: AGGGCTACACACCCAATTTCAAAACAACAAAAATCT...CCATGGCTGAGGAAGCAGCTCAGACCTCCCACACAGCATCCCCTCAGAGGTGCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| 3UTR-3UTR TCA 90 bp | GTGCTCACTGTCCCTGCCAGTGAGGAAGCAGCAGTGGCACAGATGGCCCCTTTTATTAGTAAAATGGGGTaGATGCCATTCGTGCTTTCA | + |
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Preference number: 2 (lower is better) Translates to: VLTVPASEEAAVAQMAPFISKMG*MPFVLS Trigger: TGAAAGCACGAATGGCATTCACCCCATTTTACTAAT...AAAAGGGGCCATCTGTGCCACTGCTGCTTCCTCACTGGCAGGGACAGTGAGCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| 3UTR-3UTR GCA 90 bp | TGCAACACTGGAAGCATCTGCAGCTCTGAGCAAGAAGGGTTTGGAGTTCAAGGAGGCTCTCCAGGAACTTaGTATGTAGACCAGGAAGGC | + |
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Preference number: 2 (lower is better) Translates to: CNTGSICSSEQEGFGVQGGSPGT*YVDQEG Trigger: GCCTTCCTGGTCTACATAGCAAGTTCCTGGAGAGCC...TCCTTGAACTCCAAACCCTTCTTGCTCAGAGCTGCAGATGCTTCCAGTGTTGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| 3UTR-3UTR GCA 90 bp | TGCAACACTGGAAGCATCTGCAGCTCTGAGCAAGAAGGGTTTGGAGTTCAAGGAGATGCTCTCCAGACATaGTTCCAGCTCCCTTCTATC | + |
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Preference number: 2 (lower is better) Translates to: CNTGSICSSEQEGFGVQGDALQT*FQLPSI Trigger: GATAGAAGGGAGCTGGAAGCATGTCTGGAGAGCATC...TCCTTGAACTCCAAACCCTTCTTGCTCAGAGCTGCAGATGCTTCCAGTGTTGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| 3UTR-3UTR CCA 90 bp | TGCAACACTGGAAGCATCTGCAGCTCTGAGCAAGAAGGGTTTGGAGTTCAAGGACTCTGTAGACCAGGCTaGTCTCAGACTCACAGAGAT | + |
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Preference number: 2 (lower is better) Translates to: CNTGSICSSEQEGFGVQGLCRPG*SQTHRD Trigger: ATCTCTGTGAGTCTGAGACCAGCCTGGTCTACAGAG...TCCTTGAACTCCAAACCCTTCTTGCTCAGAGCTGCAGATGCTTCCAGTGTTGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| 3UTR-3UTR CCA 90 bp | TTCCAGCGCTTGAAGGGGTGTGCAAAGGGGAATGGGCTTGTTCCACACAGACGTCTGAAATTAGTAAAATaGGGTGAATGCCATTCGTGC | + |
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Preference number: 2 (lower is better) Translates to: FQRLKGCAKGNGLVPHRRLKLVK*GECHSC Trigger: GCACGAATGGCATTCACCCCATTTTACTAATTTCAG...ACGTCTGTGTGGAACAAGCCCATTCCCCTTTGCACACCCCTTCAAGCGCTGGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| 3UTR-3UTR TCA 90 bp | ATGGGAAAGAATATGCCTGTGTTTATAACAAGTTGCTGCAGCACATTTTTGCATGCTGTGTGGGAGGTCTaGGCTGCTTCCTCAGCCATG | + |
|
Preference number: 2 (lower is better) Translates to: MGKNMPVFITSCCSTFLHAVWEV*AASSAM Trigger: CATGGCTGAGGAAGCAGCTCAGACCTCCCACACAGC...ATGCAAAAATGTGCTGCAGCAACTTGTTATAAACACAGGCATATTCTTTCCCAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
||
| 3UTR-3UTR GCA 90 bp | CCACATAAAAATGGCAGGCATGGTGGTGCACACTTAAAATCTGAGCACTGGAGACTCAGAGATGAGCCCTaGTCATCCTCCAGTGTATTT | + |
|
Preference number: 2 (lower is better) Translates to: PHKNGRHGGAHLKSEHWRLRDEP*SSSSVF Trigger: AAATACACTGGAGGATGAGCAGGGCTCATCTCTGAG...TCTCCAGTGCTCAGATTTTAAGTGTGCACCACCATGCCTGCCATTTTTATGTGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
||
| 3UTR-3UTR CCA 90 bp | GCACTGGAGAGGCAGCAGAGATGGGCAGATCACTTGAGGCTTGCTATACAAGCAGTGAAGGATGTCAGATaGCAATTTAGAAGACAAGAA | + |
|
Preference number: 2 (lower is better) Translates to: ALERQQRWADHLRLAIQAVKDVR*QFRRQE Trigger: TTCTTGTCTTCTAAATTGCCATCTGACATCCTTCAC...TGCTTGTATAGCAAGCCTCAAGTGATCTGCCCATCTCTGCTGCCTCTCCAGTGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
||
| 3UTR-3UTR TCA 90 bp | CCACATAAAAATGGCAGGCATGGTGGTGCACACTTAAAATCTGAGCACTGGAGAAGTATGCAGGAGAGCTaGAGTGGAAAGAAGGTAACA | + |
|
Preference number: 2 (lower is better) Translates to: PHKNGRHGGAHLKSEHWRSMQES*SGKKVT Trigger: TGTTACCTTCTTTCCACTTCAGCTCTCCTGCATACT...TCTCCAGTGCTCAGATTTTAAGTGTGCACCACCATGCCTGCCATTTTTATGTGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
||
| 3UTR-3UTR TCA 90 bp | TGCAACACTGGAAGCATCTGCAGCTCTGAGCAAGAAGGGTTTGGAGTTCAAGGATGGAATTTATGGAGATaGGTTTTCCAAAGACAGGAT | + |
|
Preference number: 2 (lower is better) Translates to: CNTGSICSSEQEGFGVQGWNLWR*VFQRQD Trigger: ATCCTGTCTTTGGAAAACTCATCTCCATAAATTCCA...TCCTTGAACTCCAAACCCTTCTTGCTCAGAGCTGCAGATGCTTCCAGTGTTGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
||
| 3UTR CAA 90 bp | TATGATAAAGTATTTTTAAAAATTTGGGCTGGAGAGATGGCTCAGTaGAAGTGCATGCAGTACCTGAGTTCAGTCACCAGAACCCACATA | + |
|
Preference number: 2 (lower is better) Translates to: YDKVFLKIWAGEMAQ*KCMQYLSSVTRTHI Trigger: TATGTGGGTTCTGGTGACTGAACTCAGGTACTGCATGCACTTCAACTGAGCCATCTCTCCAGCCCAAATTTTTAAAAATACTTTATCATA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
||
| 3UTR CAA 90 bp | GTGTTTATAACAAGTTGCTGCAGCACATTTTTGCATTTTAGTAAATaGTTAATCTGCCCAGCAGGCAATCGTTTCCCTCTTAGGAACACT | + |
|
Preference number: 2 (lower is better) Translates to: VFITSCCSTFLHFSK*LICPAGNRFPLRNT Trigger: AGTGTTCCTAAGAGGGAAACGATTGCCTGCTGGGCAGATTAACAATTTACTAAAATGCAAAAATGTGCTGCAGCAACTTGTTATAAACAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
||
| 3UTR CAA 90 bp | GGAAAGAATATGCCTGTGTTTATAACAAGTTGCTGCAGCACATTTTaGCATTTTAGTAAATTGTTAATCTGCCCAGCAGGCAATCGTTTC | + |
|
Preference number: 2 (lower is better) Translates to: GKNMPVFITSCCSTF*HFSKLLICPAGNRF Trigger: GAAACGATTGCCTGCTGGGCAGATTAACAATTTACTAAAATGCAAAAATGTGCTGCAGCAACTTGTTATAAACACAGGCATATTCTTTCC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
||
| 3UTR CAA 90 bp | TTGTTTCCTTTGAAACAGGATCTTAGCTATAAAGAAATTACATGGTaGAGATTGACATGGATGATCTCCCTAGACACACATCACTACCAT | + |
|
Preference number: 2 (lower is better) Translates to: LFPLKQDLSYKEITW*RLTWMISLDTHHYH Trigger: ATGGTAGTGATGTGTGTCTAGGGAGATCATCCATGTCAATCTCAACCATGTAATTTCTTTATAGCTAAGATCCTGTTTCAAAGGAAACAA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
||
| 3UTR TCA 72 bp | CCTCCCTGCCACCGCTGGAGGACAGATGGGGAGGCTTaGGTGCAGCTGGTGGTGTCCTGTCCCTTTGCCTCC | + |
|
Preference number: 3 (lower is better) Translates to: PPCHRWRTDGEA*VQLVVSCPFAS Trigger: GGAGGCAAAGGGACAGGACACCACCAGCTGCACTCAAGCCTCCCCATCTGTCCTCCAGCGGTGGCAGGGAGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
||
| 3UTR GCA 72 bp | GCCTCCACACCACGCCATGCCCAGAGCCAGCAGCCATaGTGCTGTAAGCAAAGGAGCAGGCCAGGACTCCGC | + |
|
Preference number: 3 (lower is better) Translates to: ASTPRHAQSQQP*CCKQRSRPGLR Trigger: GCGGAGTCCTGGCCTGCTCCTTTGCTTACAGCAGCATGGCTGCTGGCTCTGGGCATGGCGTGGTGTGGAGGC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
||
| 3UTR CCA 72 bp | ACCGCTGGAGGACAGATGGGGAGGCTTGAGTGCAGCTaGTGGTGTCCTGTCCCTTTGCCTCCACACCACGCC | + |
|
Preference number: 3 (lower is better) Translates to: TAGGQMGRLECS*WCPVPLPPHHA Trigger: GGCGTGGTGTGGAGGCAAAGGGACAGGACACCACCAGCTGCACTCAAGCCTCCCCATCTGTCCTCCAGCGGT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
||
| 3UTR CCA 72 bp | GCTGGAGGACAGATGGGGAGGCTTGAGTGCAGCTGGTaGTGTCCTGTCCCTTTGCCTCCACACCACGCCATG | + |
|
Preference number: 3 (lower is better) Translates to: AGGQMGRLECSW*CPVPLPPHHAM Trigger: CATGGCGTGGTGTGGAGGCAAAGGGACAGGACACCACCAGCTGCACTCAAGCCTCCCCATCTGTCCTCCAGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
||
| 3UTR GCA 72 bp | GCACCTCTGAGGGGATGCTGTGTGGGAGGTCTGAGCTaGTTCCTCAGCCATGGCTTTGAAACACCATCAGAC | + |
|
Preference number: 3 (lower is better) Translates to: APLRGCCVGGLS*FLSHGFETPSD Trigger: GTCTGATGGTGTTTCAAAGCCATGGCTGAGGAAGCAGCTCAGACCTCCCACACAGCATCCCCTCAGAGGTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
||
| 3UTR GCA 72 bp | ACTGCTGAGGTCATGCATCTCTACACCAAGAGTGAATaGAGGGGGTGGGGTTGCTGGACATGTGGTGCGGTC | + |
|
Preference number: 3 (lower is better) Translates to: TAEVMHLYTKSE*RGWGCWTCGAV Trigger: GACCGCACCACATGTCCAGCAACCCCACCCCCTGCATTCACTCTTGGTGTAGAGATGCATGACCTCAGCAGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
||
| 3UTR CCA 72 bp | CTGTCCCTGCCAGTGAGGAAGCAGCAGTGGCACAGATaGCCCCTTTTCCCACTTAAGTATGCAGGAGAGCTG | + |
|
Preference number: 3 (lower is better) Translates to: LSLPVRKQQWHR*PLFPLKYAGEL Trigger: CAGCTCTCCTGCATACTTAAGTGGGAAAAGGGGCCATCTGTGCCACTGCTGCTTCCTCACTGGCAGGGACAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
||
| 3UTR CCA 72 bp | GCGGTCACTAGCAGTGTACAGCTGGAGGCTTTTAGCTaGGGCATGCCAGTGGCTACAGCAGGACCAAAAGGT | + |
|
Preference number: 3 (lower is better) Translates to: AVTSSVQLEAFS*GMPVATAGPKG Trigger: ACCTTTTGGTCCTGCTGTAGCCACTGGCATGCCCCAGCTAAAAGCCTCCAGCTGTACACTGCTAGTGACCGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
||
| 3UTR CCA 72 bp | CTCTACACCAAGAGTGAATGCAGGGGGTGGGGTTGCTaGACATGTGGTGCGGTCACTAGCAGTGTACAGCTG | + |
|
Preference number: 3 (lower is better) Translates to: LYTKSECRGWGC*TCGAVTSSVQL Trigger: CAGCTGTACACTGCTAGTGACCGCACCACATGTCCAGCAACCCCACCCCCTGCATTCACTCTTGGTGTAGAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
||
| 3UTR GCA 72 bp | AAACCTCTCAGGCTCTTTCCAGCGCTTGAAGGGGTGTaGAAAGGGGAATGGGCTTGTTCCACACAGACGTGC | + |
|
Preference number: 3 (lower is better) Translates to: KPLRLFPALEGV*KGEWACSTQTC Trigger: GCACGTCTGTGTGGAACAAGCCCATTCCCCTTTGCACACCCCTTCAAGCGCTGGAAAGAGCCTGAGAGGTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
||
| 3UTR GCA 72 bp | CATCTCTACACCAAGAGTGAATGCAGGGGGTGGGGTTaGTGGACATGTGGTGCGGTCACTAGCAGTGTACAG | + |
|
Preference number: 3 (lower is better) Translates to: HLYTKSECRGWG*WTCGAVTSSVQ Trigger: CTGTACACTGCTAGTGACCGCACCACATGTCCAGCAACCCCACCCCCTGCATTCACTCTTGGTGTAGAGATG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
||
| 3UTR GCA 72 bp | GGAGAGGCAGCAGAGATGGGCAGATCACTTGAGGCTTaGTATACAAGCAGCCTAAGCTACTTGGCGAGCCCT | + |
|
Preference number: 3 (lower is better) Translates to: GEAAEMGRSLEA*YTSSLSYLASP Trigger: AGGGCTCGCCAAGTAGCTTAGGCTGCTTGTATAGCAAGCCTCAAGTGATCTGCCCATCTCTGCTGCCTCTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
||
| 3UTR CCA 72 bp | GCATGCAAGCTGACAGACCTAGAGGGACAGGATCCTTaGCGTATGCATATGGTTGGTAAGAGGGAGGCTGGG | + |
|
Preference number: 3 (lower is better) Translates to: ACKLTDLEGQDP*RMHMVGKREAG Trigger: CCCAGCCTCCCTCTTACCAACCATATGCATACGCCAAGGATCCTGTCCCTCTAGGTCTGTCAGCTTGCATGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
||
| 3UTR CCA 72 bp | GTCATGCATCTCTACACCAAGAGTGAATGCAGGGGGTaGGGTTGCTGGACATGTGGTGCGGTCACTAGCAGT | + |
|
Preference number: 3 (lower is better) Translates to: VMHLYTKSECRG*GCWTCGAVTSS Trigger: ACTGCTAGTGACCGCACCACATGTCCAGCAACCCCACCCCCTGCATTCACTCTTGGTGTAGAGATGCATGAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
||
| 3UTR-3UTR CAA 90 bp | AGACTCACAGAGATCAGCCTTTGTCTCCCTCCATTGGGATTAAAGGCATGTGCCGACAGATGGGGAGGCTaGAGTGCAGCTGGTGGTGTC | + |
|
Preference number: 3 (lower is better) Translates to: RLTEISLCLPPLGLKACADRWGG*SAAGGV Trigger: GACACCACCAGCTGCACTCAAGCCTCCCCATCTGTC...GGCACATGCCTTTAATCCCAATGGAGGGAGACAAAGGCTGATCTCTGTGAGTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
||
| 3UTR TCA 72 bp | GAGCACTGGAGAGGCAGCAGAGATGGGCAGATCACTTaGGGCTTGCTATACAAGCAGCCTAAGCTACTTGGC | + |
|
Preference number: 3 (lower is better) Translates to: EHWRGSRDGQIT*GLLYKQPKLLG Trigger: GCCAAGTAGCTTAGGCTGCTTGTATAGCAAGCCTCAAGTGATCTGCCCATCTCTGCTGCCTCTCCAGTGCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
||
| 3UTR GCA 72 bp | GTAATAGCAGTCTCACTTTCAGGTGCAGAAGTGGAGTaGTCACTGTCCCTGCCAGTGAGGAAGCAGCAGTGG | + |
|
Preference number: 3 (lower is better) Translates to: VIAVSLSGAEVE*SLSLPVRKQQW Trigger: CCACTGCTGCTTCCTCACTGGCAGGGACAGTGAGCACTCCACTTCTGCACCTGAAAGTGAGACTGCTATTAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
||
| 3UTR-3UTR CAA 90 bp | TTCCAGCGCTTGAAGGGGTGTGCAAAGGGGAATGGGCTTGTTCCACACAGACGTCACAGAGATCAGCCTTaGTCTCCCTCCATTGGGATT | + |
|
Preference number: 3 (lower is better) Translates to: FQRLKGCAKGNGLVPHRRHRDQP*SPSIGI Trigger: AATCCCAATGGAGGGAGACAAAGGCTGATCTCTGTG...ACGTCTGTGTGGAACAAGCCCATTCCCCTTTGCACACCCCTTCAAGCGCTGGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
||
| 3UTR GCA 72 bp | CAGCAGGGTATAGGTAATAGCAGTCTCACTTTCAGGTaGAGAAGTGGAGTGCTCACTGTCCCTGCCAGTGAG | + |
|
Preference number: 3 (lower is better) Translates to: QQGIGNSSLTFR*RSGVLTVPASE Trigger: CTCACTGGCAGGGACAGTGAGCACTCCACTTCTGCACCTGAAAGTGAGACTGCTATTACCTATACCCTGCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
||
| 3UTR-3UTR CAA 90 bp | AGCCCTGGCTCTCCAGGAACTTGCTATGTAGACCAGGAAGGCAATGAGTTCAGACTTTGTCTCCCTCCATaGGGATTAAAGGCATGTGCC | + |
|
Preference number: 3 (lower is better) Translates to: SPGSPGTCYVDQEGNEFRLCLPP*GLKACA Trigger: GGCACATGCCTTTAATCCCAATGGAGGGAGACAAAG...TCTGAACTCATTGCCTTCCTGGTCTACATAGCAAGTTCCTGGAGAGCCAGGGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
||
| 3UTR TCA 72 bp | GTGTGTAAGGTGGACTCAGAACTAAGAGAACAAGGCTaGCATTGGCCTTGGTGGCTTCTTGGTTGTTCGTGG | + |
|
Preference number: 3 (lower is better) Translates to: VCKVDSELREQG*HWPWWLLGCSW Trigger: CCACGAACAACCAAGAAGCCACCAAGGCCAATGTCAGCCTTGTTCTCTTAGTTCTGAGTCCACCTTACACAC 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
||
| 3UTR CCA 72 bp | ACACCATCAGACCTAGATGCTCCCGTGGGGAGAGCCTaGGAAGAAAAGAACCACAAGGAAGTCCTTATAGTT | + |
|
Preference number: 3 (lower is better) Translates to: TPSDLDAPVGRA*EEKNHKEVLIV Trigger: AACTATAAGGACTTCCTTGTGGTTCTTTTCTTCCCAGGCTCTCCCCACGGGAGCATCTAGGTCTGATGGTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
||
| 3UTR CCA 72 bp | TACAGCAGGACCAAAAGGTACCTGGAAGAGTTAAAGTaGAAAGGACTATTGGGGAGCCATGCTTGGCTGGCT | + |
|
Preference number: 3 (lower is better) Translates to: YSRTKRYLEELK*KGLLGSHAWLA Trigger: AGCCAGCCAAGCATGGCTCCCCAATAGTCCTTTCCACTTTAACTCTTCCAGGTACCTTTTGGTCCTGCTGTA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
||
| 3UTR CCA 72 bp | TTTCATTCCTCAGGAGGACTGGTGAGAAGAGCTTTGTaGCACACTGCTGAGGTCATGCATCTCTACACCAAG | + |
|
Preference number: 3 (lower is better) Translates to: FHSSGGLVRRAL*HTAEVMHLYTK Trigger: CTTGGTGTAGAGATGCATGACCTCAGCAGTGTGCCACAAAGCTCTTCTCACCAGTCCTCCTGAGGAATGAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
||
| 3UTR-3UTR CAA 90 bp | TTTCCAGCGCTTGAAGGGGTGTGCAAAGGGGAATGGGCTTGTTCCACACAGACGATAATAACATGCATCTaGGGGAAACCATCCAAAGTG | + |
|
Preference number: 3 (lower is better) Translates to: FPALEGVCKGEWACSTQTIITCI*GKPSKV Trigger: CACTTTGGATGGTTTCCCCAAGATGCATGTTATTAT...CGTCTGTGTGGAACAAGCCCATTCCCCTTTGCACACCCCTTCAAGCGCTGGAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
||
| 3UTR TCA 72 bp | GATGGCCCCTTTTCCCACTTAAGTATGCAGGAGAGCTaGAGTGGAAAGAAGGTAACACCTGCAACACTGGAA | + |
|
Preference number: 3 (lower is better) Translates to: DGPFSHLSMQES*SGKKVTPATLE Trigger: TTCCAGTGTTGCAGGTGTTACCTTCTTTCCACTTCAGCTCTCCTGCATACTTAAGTGGGAAAAGGGGCCATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
||
| 3UTR GCA 72 bp | GTGTGCAAAGGGGAATGGGCTTGTTCCACACAGACGTaGTGGCTGGAATTTATGGAGATGAGTTTTCCAAAG | + |
|
Preference number: 3 (lower is better) Translates to: VCKGEWACSTQT*WLEFMEMSFPK Trigger: CTTTGGAAAACTCATCTCCATAAATTCCAGCCAGCACGTCTGTGTGGAACAAGCCCATTCCCCTTTGCACAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
||
| 3UTR GCA 72 bp | TATGCAGGAGAGCTGAAGTGGAAAGAAGGTAACACCTaGAACACTGGAAGCATCTGCAGCTCTGAGCAAGAA | + |
|
Preference number: 3 (lower is better) Translates to: YAGELKWKEGNT*NTGSICSSEQE Trigger: TTCTTGCTCAGAGCTGCAGATGCTTCCAGTGTTGCAGGTGTTACCTTCTTTCCACTTCAGCTCTCCTGCATA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
||
| 3UTR CCA 72 bp | CCCCTTTTCCCACTTAAGTATGCAGGAGAGCTGAAGTaGAAAGAAGGTAACACCTGCAACACTGGAAGCATC | + |
|
Preference number: 3 (lower is better) Translates to: PLFPLKYAGELK*KEGNTCNTGSI Trigger: GATGCTTCCAGTGTTGCAGGTGTTACCTTCTTTCCACTTCAGCTCTCCTGCATACTTAAGTGGGAAAAGGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
||
| 3UTR CCA 72 bp | TTGCTATACAAGCAGCCTAAGCTACTTGGCGAGCCCTaGGCCAGTGAGAAAAATGAAGGGTACCTGAAGAAT | + |
|
Preference number: 3 (lower is better) Translates to: LLYKQPKLLGEP*ASEKNEGYLKN Trigger: ATTCTTCAGGTACCCTTCATTTTTCTCACTGGCCCAGGGCTCGCCAAGTAGCTTAGGCTGCTTGTATAGCAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
||
| 3UTR-3UTR CAA 90 bp | GCACTGGAGAGGCAGCAGAGATGGGCAGATCACTTGAGGCTTGCTATACAAGCATGTGTTTATAACAAGTaGCTGCAGCACATTTTTGCA | + |
|
Preference number: 3 (lower is better) Translates to: ALERQQRWADHLRLAIQACVYNK*LQHIFA Trigger: TGCAAAAATGTGCTGCAGCAACTTGTTATAAACACA...TGCTTGTATAGCAAGCCTCAAGTGATCTGCCCATCTCTGCTGCCTCTCCAGTGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
||
| 3UTR TCA 72 bp | GTTCCACACAGACGTGCTGGCTGGAATTTATGGAGATaGGTTTTCCAAAGACAGGATGAGTTATCCCCTCAG | + |
|
Preference number: 3 (lower is better) Translates to: VPHRRAGWNLWR*VFQRQDELSPQ Trigger: CTGAGGGGATAACTCATCCTGTCTTTGGAAAACTCATCTCCATAAATTCCAGCCAGCACGTCTGTGTGGAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
||
| 3UTR GCA 72 bp | ACGCCATATACACACTCCTTTCTCAGAGATGAGCCCTaGTCATCCTCCAGTGTATTTTTCTGGTCTTTGTGC | + |
|
Preference number: 3 (lower is better) Translates to: TPYTHSFLRDEP*SSSSVFFWSLC Trigger: GCACAAAGACCAGAAAAATACACTGGAGGATGAGCAGGGCTCATCTCTGAGAAAGGAGTGTGTATATGGCGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
||
| 3UTR GCA 72 bp | TTAAAAATTTGGGCTGGAGAGATGGCTCAGTTGAAGTaGATGCAGTACCTGAGTTCAGTCACCAGAACCCAC | + |
|
Preference number: 3 (lower is better) Translates to: LKIWAGEMAQLK*MQYLSSVTRTH Trigger: GTGGGTTCTGGTGACTGAACTCAGGTACTGCATGCACTTCAACTGAGCCATCTCTCCAGCCCAAATTTTTAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
||
| 3UTR CCA 72 bp | TGCAAAGGGGAATGGGCTTGTTCCACACAGACGTGCTaGCTGGAATTTATGGAGATGAGTTTTCCAAAGACA | + |
|
Preference number: 3 (lower is better) Translates to: CKGEWACSTQTC*LEFMEMSFPKT Trigger: TGTCTTTGGAAAACTCATCTCCATAAATTCCAGCCAGCACGTCTGTGTGGAACAAGCCCATTCCCCTTTGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
||
| 3UTR CCA 72 bp | AGAGATGAGCCCTGCTCATCCTCCAGTGTATTTTTCTaGTCTTTGTGCACATTGTGTGTAAGGTGGACTCAG | + |
|
Preference number: 3 (lower is better) Translates to: RDEPCSSSSVFF*SLCTLCVRWTQ Trigger: CTGAGTCCACCTTACACACAATGTGCACAAAGACCAGAAAAATACACTGGAGGATGAGCAGGGCTCATCTCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
||
| 3UTR GCA 72 bp | CAACTGAAATTAGTAAAATGGGGTGAATGCCATTCGTaGTTTCAAGGTTCCACTCATCCTAGGAATTGTTTC | + |
|
Preference number: 3 (lower is better) Translates to: QLKLVKWGECHS*FQGSTHPRNCF Trigger: GAAACAATTCCTAGGATGAGTGGAACCTTGAAAGCACGAATGGCATTCACCCCATTTTACTAATTTCAGTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
||
| 3UTR GCA 72 bp | TGCAGCACATTTTTGCATTTTAGTAAATTGTTAATCTaGCCAGCAGGCAATCGTTTCCCTCTTAGGAACACT | + |
|
Preference number: 3 (lower is better) Translates to: CSTFLHFSKLLI*PAGNRFPLRNT Trigger: AGTGTTCCTAAGAGGGAAACGATTGCCTGCTGGGCAGATTAACAATTTACTAAAATGCAAAAATGTGCTGCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
||
| 3UTR CCA 72 bp | CTTAGCTATAAAGAAATTACATGGTTGAGATTGACATaGATGATCTCCCTAGACACACATCACTACCATGAG | + |
|
Preference number: 3 (lower is better) Translates to: LSYKEITWLRLT*MISLDTHHYHE Trigger: CTCATGGTAGTGATGTGTGTCTAGGGAGATCATCCATGTCAATCTCAACCATGTAATTTCTTTATAGCTAAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
||
| 3UTR TCA 72 bp | TTTCAAGGTTCCACTCATCCTAGGAATTGTTTCCTTTaGAACAGGATCTTAGCTATAAAGAAATTACATGGT | + |
|
Preference number: 3 (lower is better) Translates to: FQGSTHPRNCFL*NRILAIKKLHG Trigger: ACCATGTAATTTCTTTATAGCTAAGATCCTGTTTCAAAGGAAACAATTCCTAGGATGAGTGGAACCTTGAAA 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
||
| 3UTR CAA 72 bp | GGGAGGCTTGAGTGCAGCTGGTGGTGTCCTGTCCCTTaGCCTCCACACCACGCCATGCCCAGAGCCAGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: GRLECSWWCPVP*PPHHAMPRASS Trigger: GCTGCTGGCTCTGGGCATGGCGTGGTGTGGAGGCAAAGGGACAGGACACCACCAGCTGCACTCAAGCCTCCC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| 3UTR CAA 72 bp | CCCTCCCTGCCACCGCTGGAGGACAGATGGGGAGGCTaGAGTGCAGCTGGTGGTGTCCTGTCCCTTTGCCTC | + |
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Preference number: 4 (lower is better) Translates to: PSLPPLEDRWGG*SAAGGVLSLCL Trigger: GAGGCAAAGGGACAGGACACCACCAGCTGCACTCAAGCCTCCCCATCTGTCCTCCAGCGGTGGCAGGGAGGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| CDS-3UTR CCA 90 bp | GCTAGCACCTCTGAGGGGATGCTGTGTGGGAGGTCTGAGCTGCTTCCTCAGCCATCCGAGCGGTCCAGCTaGTTCCATCGCCGGGCCAGG | + |
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Preference number: 4 (lower is better) Translates to: ASTSEGMLCGRSELLPQPSERSS*FHRRAR Trigger: CCTGGCCCGGCGATGGAACCAGCTGGACCGCTCGGA...TGGCTGAGGAAGCAGCTCAGACCTCCCACACAGCATCCCCTCAGAGGTGCTAGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| CDS-3UTR CCA 90 bp | GCTAGCACCTCTGAGGGGATGCTGTGTGGGAGGTCTGAGCTGCTTCCTCAGCCACTCACCTCTGGAACCTaGAAGCTGGCCCCAGGGCTG | + |
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Preference number: 4 (lower is better) Translates to: ASTSEGMLCGRSELLPQPLTSGT*KLAPGL Trigger: CAGCCCTGGGGCCAGCTTCCAGGTTCCAGAGGTGAG...TGGCTGAGGAAGCAGCTCAGACCTCCCACACAGCATCCCCTCAGAGGTGCTAGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| CDS-3UTR CCA 90 bp | TTTCCAGCGCTTGAAGGGGTGTGCAAAGGGGAATGGGCTTGTTCCACACAGACGAGCTGGCCCCAGGGCTaGGGTCCCATCCGGAGCTGT | + |
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Preference number: 4 (lower is better) Translates to: FPALEGVCKGEWACSTQTSWPQG*GPIRSC Trigger: ACAGCTCCGGATGGGACCCCAGCCCTGGGGCCAGCT...CGTCTGTGTGGAACAAGCCCATTCCCCTTTGCACACCCCTTCAAGCGCTGGAAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| CDS-3UTR GCA 90 bp | CTGACAGACCTAGAGGGACAGGATCCTTGGCGTATGCATATGGTTGGTAAGAGGGGTCGCTACTACAGCTaGGTCCGCGTCCCCGACCGG | + |
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Preference number: 4 (lower is better) Translates to: LTDLEGQDPWRMHMVGKRGRYYS*VRVPDR Trigger: CCGGTCGGGGACGCGGACGCAGCTGTAGTAGCGACC...CCTCTTACCAACCATATGCATACGCCAAGGATCCTGTCCCTCTAGGTCTGTCAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| CDS-3UTR TCA 90 bp | GCTAGCACCTCTGAGGGGATGCTGTGTGGGAGGTCTGAGCTGCTTCCTCAGCCATGCCTTTGTGGATCTTaGGGGCTTCACTCCAGTCCA | + |
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Preference number: 4 (lower is better) Translates to: ASTSEGMLCGRSELLPQPCLCGS*GLHSSP Trigger: TGGACTGGAGTGAAGCCCTCAAGATCCACAAAGGCA...TGGCTGAGGAAGCAGCTCAGACCTCCCACACAGCATCCCCTCAGAGGTGCTAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| 3UTR CAA 72 bp | GGGTTTCATTCCTCAGGAGGACTGGTGAGAAGAGCTTaGTGGCACACTGCTGAGGTCATGCATCTCTACACC | + |
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Preference number: 4 (lower is better) Translates to: GFHSSGGLVRRA*WHTAEVMHLYT Trigger: GGTGTAGAGATGCATGACCTCAGCAGTGTGCCACAAAGCTCTTCTCACCAGTCCTCCTGAGGAATGAAACCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| CDS-3UTR CCA 90 bp | GGCTTGTTCCACACAGACGTGCTGGCTGGAATTTATGGAGATGAGTTTTCCAAAACACCGAAATCGCGCTaGTACTGGGTGAGCGGCACA | + |
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Preference number: 4 (lower is better) Translates to: GLFHTDVLAGIYGDEFSKTPKSR*YWVSGT Trigger: TGTGCCGCTCACCCAGTACCAGCGCGATTTCGGTGT...TTTGGAAAACTCATCTCCATAAATTCCAGCCAGCACGTCTGTGTGGAACAAGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| 3UTR CAA 72 bp | CTCAGACTCACAGAGATCAGCCTTTGTCTCCCTCCATaGGGATTAAAGGCATGTGCCACCACTGCTGAGCTA | + |
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Preference number: 4 (lower is better) Translates to: LRLTEISLCLPP*GLKACATTAEL Trigger: TAGCTCAGCAGTGGTGGCACATGCCTTTAATCCCAATGGAGGGAGACAAAGGCTGATCTCTGTGAGTCTGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| 3UTR CAA 72 bp | TCACTTGAGGCTTGCTATACAAGCAGCCTAAGCTACTaGGCGAGCCCTGGGCCAGTGAGAAAAATGAAGGGT | + |
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Preference number: 4 (lower is better) Translates to: SLEACYTSSLSY*ASPGPVRKMKG Trigger: ACCCTTCATTTTTCTCACTGGCCCAGGGCTCGCCAAGTAGCTTAGGCTGCTTGTATAGCAAGCCTCAAGTGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| CDS-3UTR CCA 90 bp | CTGACAGACCTAGAGGGACAGGATCCTTGGCGTATGCATATGGTTGGTAAGAGGCTGTTCTTGCCTTTGTaGATCTTGAGGGCTTCACTC | + |
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Preference number: 4 (lower is better) Translates to: LTDLEGQDPWRMHMVGKRLFLPL*ILRASL Trigger: GAGTGAAGCCCTCAAGATCCACAAAGGCAAGAACAG...CCTCTTACCAACCATATGCATACGCCAAGGATCCTGTCCCTCTAGGTCTGTCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| CDS-3UTR CCA 90 bp | ATGGGAAAGAATATGCCTGTGTTTATAACAAGTTGCTGCAGCACATTTTTGCATCTGGAACCTGGAAGCTaGCCCCAGGGCTGGGGTCCC | + |
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Preference number: 4 (lower is better) Translates to: MGKNMPVFITSCCSTFLHLEPGS*PQGWGP Trigger: GGGACCCCAGCCCTGGGGCCAGCTTCCAGGTTCCAG...ATGCAAAAATGTGCTGCAGCAACTTGTTATAAACACAGGCATATTCTTTCCCAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| CDS-3UTR TCA 90 bp | AGCCCTGGCTCTCCAGGAACTTGCTATGTAGACCAGGAAGGCAATGAGTTCAGATGTCTGAAAGATGGCTaGGGGATTAGGTGTGAATTT | + |
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Preference number: 4 (lower is better) Translates to: SPGSPGTCYVDQEGNEFRCLKDG*GIRCEF Trigger: AAATTCACACCTAATCCCTCAGCCATCTTTCAGACA...TCTGAACTCATTGCCTTCCTGGTCTACATAGCAAGTTCCTGGAGAGCCAGGGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| 3UTR CAA 72 bp | ACACTGGAAGCATCTGCAGCTCTGAGCAAGAAGGGTTaGGAGTTCAAGGATATTAGCGAAGCTACACTATAT | + |
|
Preference number: 4 (lower is better) Translates to: TLEASAALSKKG*EFKDISEATLY Trigger: ATATAGTGTAGCTTCGCTAATATCCTTGAACTCCAAACCCTTCTTGCTCAGAGCTGCAGATGCTTCCAGTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| 3UTR CAA 72 bp | TTGAAACAGGATCTTAGCTATAAAGAAATTACATGGTaGAGATTGACATGGATGATCTCCCTAGACACACAT | + |
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Preference number: 4 (lower is better) Translates to: LKQDLSYKEITW*RLTWMISLDTH Trigger: ATGTGTGTCTAGGGAGATCATCCATGTCAATCTCAACCATGTAATTTCTTTATAGCTAAGATCCTGTTTCAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| CDS CCA 90 bp | CGGGACCCGGCGCGCGCGGTTCGCACACCGAAATCGCGCTGGTACTaGGTGAGCGGCACAGCGCGGCTGGACTCCCGCGCGCCTGCGACC | + |
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Preference number: 5 (lower is better) Translates to: RDPARAVRTPKSRWY*VSGTARLDSRAPAT Trigger: GGTCGCAGGCGCGCGGGAGTCCAGCCGCGCTGTGCCGCTCACCCAGTACCAGCGCGATTTCGGTGTGCGAACCGCGCGCGCCGGGTCCCG 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| CDS TCA 90 bp | ACCCGGCGCGCGCGGTTCGCACACCGAAATCGCGCTGGTACTGGGTaGGCGGCACAGCGCGGCTGGACTCCCGCGCGCCTGCGACCGACG | + |
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Preference number: 5 (lower is better) Translates to: TRRARFAHRNRAGTG*AAQRGWTPARLRPT Trigger: CGTCGGTCGCAGGCGCGCGGGAGTCCAGCCGCGCTGTGCCGCTCACCCAGTACCAGCGCGATTTCGGTGTGCGAACCGCGCGCGCCGGGT 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| CDS CCA 90 bp | GCATCCCGGGACCCGGCGCGCGCGGTTCGCACACCGAAATCGCGCTaGTACTGGGTGAGCGGCACAGCGCGGCTGGACTCCCGCGCGCCT | + |
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Preference number: 5 (lower is better) Translates to: ASRDPARAVRTPKSR*YWVSGTARLDSRAP Trigger: AGGCGCGCGGGAGTCCAGCCGCGCTGTGCCGCTCACCCAGTACCAGCGCGATTTCGGTGTGCGAACCGCGCGCGCCGGGTCCCGGGATGC 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| CDS GCA 90 bp | CCGCGCGCCTGCGACCGACGGGTTCCCGCGCGAGACGCTGCAGTCTaGGCCCGACTCCTCGCTCCCGGGGTCCGAGTAACCATGCAGAGT | + |
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Preference number: 5 (lower is better) Translates to: PRACDRRVPARDAAV*ARLLAPGVRVTMQS Trigger: ACTCTGCATGGTTACTCGGACCCCGGGAGCGAGGAGTCGGGCGCAGACTGCAGCGTCTCGCGCGGGAACCCGTCGGTCGCAGGCGCGCGG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| CDS GCA 90 bp | CCAAGCTTGGAATTCCTGTCTATAAGACGTGGTCGCTACTACAGCTaGGTCCGCGTCCCCGACCGGCAGCACGTAGACCGTCCGGGTGGG | + |
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Preference number: 5 (lower is better) Translates to: PSLEFLSIRRGRYYS*VRVPDRQHVDRPGG Trigger: CCCACCCGGACGGTCTACGTGCTGCCGGTCGGGGACGCGGACGCAGCTGTAGTAGCGACCACGTCTTATAGACAGGAATTCCAAGCTTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| CDS TCA 90 bp | GGAAGCTGGCCCCAGGGCTGGGGTCCCATCCGGAGCTGTGAGTTGTaGCGACTCTGGCTGTTCTTGCCTTTGTGGATCTTGAGGGCTTCA | + |
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Preference number: 5 (lower is better) Translates to: GSWPQGWGPIRSCEL*RLWLFLPLWILRAS Trigger: TGAAGCCCTCAAGATCCACAAAGGCAAGAACAGCCAGAGTCGTCACAACTCACAGCTCCGGATGGGACCCCAGCCCTGGGGCCAGCTTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| CDS TCA 90 bp | GGAACCTGGAAGCTGGCCCCAGGGCTGGGGTCCCATCCGGAGCTGTaGGTTGTGACGACTCTGGCTGTTCTTGCCTTTGTGGATCTTGAG | + |
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Preference number: 5 (lower is better) Translates to: GTWKLAPGLGSHPEL*VVTTLAVLAFVDLE Trigger: CTCAAGATCCACAAAGGCAAGAACAGCCAGAGTCGTCACAACTCACAGCTCCGGATGGGACCCCAGCCCTGGGGCCAGCTTCCAGGTTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| CDS TCA 90 bp | GCTGTGAGTTGTGACGACTCTGGCTGTTCTTGCCTTTGTGGATCTTaGGGGCTTCACTCCAGTCCAAGCTTGGAATTCCTGTCTATAAGA | + |
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Preference number: 5 (lower is better) Translates to: AVSCDDSGCSCLCGS*GLHSSPSLEFLSIR Trigger: TCTTATAGACAGGAATTCCAAGCTTGGACTGGAGTGAAGCCCTCAAGATCCACAAAGGCAAGAACAGCCAGAGTCGTCACAACTCACAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| CDS-3UTR CAA 90 bp | GGCTTGTTCCACACAGACGTGCTGGCTGGAATTTATGGAGATGAGTTTTCCAAACGACTCTGGCTGTTCTaGCCTTTGTGGATCTTGAGG | + |
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Preference number: 5 (lower is better) Translates to: GLFHTDVLAGIYGDEFSKRLWLF*PLWILR Trigger: CCTCAAGATCCACAAAGGCAAGAACAGCCAGAGTCG...TTTGGAAAACTCATCTCCATAAATTCCAGCCAGCACGTCTGTGTGGAACAAGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| CDS-3UTR CAA 90 bp | AGACTCACAGAGATCAGCCTTTGTCTCCCTCCATTGGGATTAAAGGCATGTGCCCACTCCAGTCCAAGCTaGGAATTCCTGTCTATAAGA | + |
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Preference number: 5 (lower is better) Translates to: RLTEISLCLPPLGLKACAHSSPS*EFLSIR Trigger: TCTTATAGACAGGAATTCCAAGCTTGGACTGGAGTG...GGCACATGCCTTTAATCCCAATGGAGGGAGACAAAGGCTGATCTCTGTGAGTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| CDS CCA 72 bp | GCGCGCGCGGTTCGCACACCGAAATCGCGCTGGTACTaGGTGAGCGGCACAGCGCGGCTGGACTCCCGCGCG | + |
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Preference number: 6 (lower is better) Translates to: ARAVRTPKSRWY*VSGTARLDSRA Trigger: CGCGCGGGAGTCCAGCCGCGCTGTGCCGCTCACCCAGTACCAGCGCGATTTCGGTGTGCGAACCGCGCGCGC 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| CDS TCA 72 bp | GCGCGGTTCGCACACCGAAATCGCGCTGGTACTGGGTaGGCGGCACAGCGCGGCTGGACTCCCGCGCGCCTG | + |
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Preference number: 6 (lower is better) Translates to: ARFAHRNRAGTG*AAQRGWTPARL Trigger: CAGGCGCGCGGGAGTCCAGCCGCGCTGTGCCGCTCACCCAGTACCAGCGCGATTTCGGTGTGCGAACCGCGC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| CDS CCA 72 bp | GACCCGGCGCGCGCGGTTCGCACACCGAAATCGCGCTaGTACTGGGTGAGCGGCACAGCGCGGCTGGACTCC | + |
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Preference number: 6 (lower is better) Translates to: DPARAVRTPKSR*YWVSGTARLDS Trigger: GGAGTCCAGCCGCGCTGTGCCGCTCACCCAGTACCAGCGCGATTTCGGTGTGCGAACCGCGCGCGCCGGGTC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| CDS TCA 72 bp | AAGCTGGCCCCAGGGCTGGGGTCCCATCCGGAGCTGTaGGTTGTGACGACTCTGGCTGTTCTTGCCTTTGTG | + |
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Preference number: 6 (lower is better) Translates to: KLAPGLGSHPEL*VVTTLAVLAFV Trigger: CACAAAGGCAAGAACAGCCAGAGTCGTCACAACTCACAGCTCCGGATGGGACCCCAGCCCTGGGGCCAGCTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| CDS TCA 72 bp | CCCCAGGGCTGGGGTCCCATCCGGAGCTGTGAGTTGTaGCGACTCTGGCTGTTCTTGCCTTTGTGGATCTTG | + |
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Preference number: 6 (lower is better) Translates to: PQGWGPIRSCEL*RLWLFLPLWIL Trigger: CAAGATCCACAAAGGCAAGAACAGCCAGAGTCGTCACAACTCACAGCTCCGGATGGGACCCCAGCCCTGGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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| CDS GCA 72 bp | GAATTCCTGTCTATAAGACGTGGTCGCTACTACAGCTaGGTCCGCGTCCCCGACCGGCAGCACGTAGACCGT | + |
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Preference number: 6 (lower is better) Translates to: EFLSIRRGRYYS*VRVPDRQHVDR Trigger: ACGGTCTACGTGCTGCCGGTCGGGGACGCGGACGCAGCTGTAGTAGCGACCACGTCTTATAGACAGGAATTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040880.9 |
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