RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MAP6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000055407

Ensembl transcript IDs: ENSMUST00000068973.11, ENSMUST00000107100.3, ENSMUST00000122101.8, ENSMUST00000127492.2, ENSMUST00000207883.2, ENSMUST00000208605.2, ENSMUST00000208924.2

Found 627 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GACCGTGGGAGCTCGATCCTTCTCGGGCTCGGGGATCACAGGGCCTaGGTCCTTCCGAGGTGCTGGTGTTGGGAAGCTTTGATCCTTAGT +
Preference number: 1 (lower is better)
Translates to: DRGSSILLGLGDHRA*VLPRCWCWEALILS
Trigger: ACTAAGGATCAAAGCTTCCCAACACCAGCACCTCGGAAGGACCCAGGCCCTGTGATCCCCGAGCCCGAGAAGGATCGAGCTCCCACGGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR TCA 90 bp GCTTGGCAGGACTCGCTACACACACTGGCCACATGCTCAGCACATTaGCCTTTCTGTGGAGCAGAGCAAGAGCTCGGTCGGGGCTGGAGG +
Preference number: 1 (lower is better)
Translates to: AWQDSLHTLATCSAH*PFCGAEQELGRGWR
Trigger: CCTCCAGCCCCGACCGAGCTCTTGCTCTGCTCCACAGAAAGGTCAATGTGCTGAGCATGTGGCCAGTGTGTGTAGCGAGTCCTGCCAAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR CCA 90 bp CTTCTCGGGCTCGGGGATCACAGGGCCTGGGTCCTTCCGAGGTGCTaGTGTTGGGAAGCTTTGATCCTTAGTGCTTGCTGGAACCACAGG +
Preference number: 1 (lower is better)
Translates to: LLGLGDHRAWVLPRC*CWEALILSACWNHR
Trigger: CCTGTGGTTCCAGCAAGCACTAAGGATCAAAGCTTCCCAACACCAGCACCTCGGAAGGACCCAGGCCCTGTGATCCCCGAGCCCGAGAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR CCA 90 bp CTCGCTACACACACTGGCCACATGCTCAGCACATTGACCTTTCTGTaGAGCAGAGCAAGAGCTCGGTCGGGGCTGGAGGGTGCATCACCA +
Preference number: 1 (lower is better)
Translates to: LATHTGHMLSTLTFL*SRARARSGLEGASP
Trigger: TGGTGATGCACCCTCCAGCCCCGACCGAGCTCTTGCTCTGCTCCACAGAAAGGTCAATGTGCTGAGCATGTGGCCAGTGTGTGTAGCGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR GCA 90 bp GGGACCATAGGAGCTTCGTTCTTCAAAGAGGCCATGATGGAGACATaGTGGTCCTTCCTACGCTCTGGGACCGTGGGAGCTCGATCCTTC +
Preference number: 1 (lower is better)
Translates to: GTIGASFFKEAMMET*WSFLRSGTVGARSF
Trigger: GAAGGATCGAGCTCCCACGGTCCCAGAGCGTAGGAAGGACCAGCATGTCTCCATCATGGCCTCTTTGAAGAACGAAGCTCCTATGGTCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR GCA 90 bp TTCCCAAACTGCAGGGACCTGAAGAGACCAAGGAGCCATCAGATCTaGCCTCTGAACCATTCACCACAGGAGAAAGCAAGCTGGGGCGGA +
Preference number: 1 (lower is better)
Translates to: FPNCRDLKRPRSHQI*PLNHSPQEKASWGG
Trigger: TCCGCCCCAGCTTGCTTTCTCCTGTGGTGAATGGTTCAGAGGGCAGATCTGATGGCTCCTTGGTCTCTTCAGGTCCCTGCAGTTTGGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR GCA 90 bp CACGGAGAGACTTTGTTGGCTCTTTGGAGCTCCACCTTCCCAAACTaGAGGGACCTGAAGAGACCAAGGAGCCATCAGATCTGCCCTCTG +
Preference number: 1 (lower is better)
Translates to: HGETLLALWSSTFPN*RDLKRPRSHQICPL
Trigger: CAGAGGGCAGATCTGATGGCTCCTTGGTCTCTTCAGGTCCCTGCAGTTTGGGAAGGTGGAGCTCCAAAGAGCCAACAAAGTCTCTCCGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR CCA 90 bp ACCATAGGAGCTTCGTTCTTCAAAGAGGCCATGATGGAGACATGCTaGTCCTTCCTACGCTCTGGGACCGTGGGAGCTCGATCCTTCTCG +
Preference number: 1 (lower is better)
Translates to: TIGASFFKEAMMETC*SFLRSGTVGARSFS
Trigger: CGAGAAGGATCGAGCTCCCACGGTCCCAGAGCGTAGGAAGGACCAGCATGTCTCCATCATGGCCTCTTTGAAGAACGAAGCTCCTATGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR CCA 90 bp ACACGAAGCCTTCCCTGTCTGCACGGAGAGACTTTGTTGGCTCTTTaGAGCTCCACCTTCCCAAACTGCAGGGACCTGAAGAGACCAAGG +
Preference number: 1 (lower is better)
Translates to: TRSLPCLHGETLLAL*SSTFPNCRDLKRPR
Trigger: CCTTGGTCTCTTCAGGTCCCTGCAGTTTGGGAAGGTGGAGCTCCAAAGAGCCAACAAAGTCTCTCCGTGCAGACAGGGAAGGCTTCGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR GCA 90 bp ATGTCTCAAGCAGGCTCACAAGGTGCACACGAAGCCTTCCCTGTCTaGACGGAGAGACTTTGTTGGCTCTTTGGAGCTCCACCTTCCCAA +
Preference number: 1 (lower is better)
Translates to: MSQAGSQGAHEAFPV*TERLCWLFGAPPSQ
Trigger: TTGGGAAGGTGGAGCTCCAAAGAGCCAACAAAGTCTCTCCGTGCAGACAGGGAAGGCTTCGTGTGCACCTTGTGAGCCTGCTTGAGACAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR CCA 90 bp CACAGGGCCTTGATCCTTCAAAGGCTCTTGGCCTTTTGGAAGACCTaGGGCCACAGAGCCTTGATCCTTGTGTGGCTCTTTGGTTACAGG +
Preference number: 1 (lower is better)
Translates to: HRALILQRLLAFWKT*GHRALILVWLFGYR
Trigger: CCTGTAACCAAAGAGCCACACAAGGATCAAGGCTCTGTGGCCCCAGGTCTTCCAAAAGGCCAAGAGCCTTTGAAGGATCAAGGCCCTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR CCA 90 bp GCGATGTGCCTTCTCACACCTGACCACTCTCTCTTAACTAGGTGTTaGGCACATCAGCAGTATGCTAAGGGCAGAGAAAAGCGGGCTCCC +
Preference number: 1 (lower is better)
Translates to: AMCLLTPDHSLLTRC*AHQQYAKGREKRAP
Trigger: GGGAGCCCGCTTTTCTCTGCCCTTAGCATACTGCTGATGTGCCCAACACCTAGTTAAGAGAGAGTGGTCAGGTGTGAGAAGGCACATCGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR GCA 90 bp GTCCTTCCGAGGTGCTGGTGTTGGGAAGCTTTGATCCTTAGTGCTTaGTGGAACCACAGGACTCTGATTCTTCAGAGGCTCTGGCAACAG +
Preference number: 1 (lower is better)
Translates to: VLPRCWCWEALILSA*WNHRTLILQRLWQQ
Trigger: CTGTTGCCAGAGCCTCTGAAGAATCAGAGTCCTGTGGTTCCAGCAAGCACTAAGGATCAAAGCTTCCCAACACCAGCACCTCGGAAGGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR CCA 90 bp CTTCCGAGGTGCTGGTGTTGGGAAGCTTTGATCCTTAGTGCTTGCTaGAACCACAGGACTCTGATTCTTCAGAGGCTCTGGCAACAGAGG +
Preference number: 1 (lower is better)
Translates to: LPRCWCWEALILSAC*NHRTLILQRLWQQR
Trigger: CCTCTGTTGCCAGAGCCTCTGAAGAATCAGAGTCCTGTGGTTCCAGCAAGCACTAAGGATCAAAGCTTCCCAACACCAGCACCTCGGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR CCA 90 bp TGCTGGGATAATGGGGTCTTGGCTCTTCACTGGCTCAGGGATCACTaGACCTTGGTTCTTCACAGGTGCTACAAACACAGAATCATGTCC +
Preference number: 1 (lower is better)
Translates to: CWDNGVLALHWLRDH*TLVLHRCYKHRIMS
Trigger: GGACATGATTCTGTGTTTGTAGCACCTGTGAAGAACCAAGGTCCAGTGATCCCTGAGCCAGTGAAGAGCCAAGACCCCATTATCCCAGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR CCA 90 bp AGGGGACCCTTGGCTAGATGCTGTGCCACCAGTAGTAAGAGTCGGTaGCCTCAGAAACATAATTTCTCCCATAAGAAACCAACTGCAGGG +
Preference number: 1 (lower is better)
Translates to: RGPLARCCATSSKSR*PQKHNFSHKKPTAG
Trigger: CCCTGCAGTTGGTTTCTTATGGGAGAAATTATGTTTCTGAGGCCACCGACTCTTACTACTGGTGGCACAGCATCTAGCCAAGGGTCCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR CCA 90 bp ATGGCATTTCAGGGCAATCAAGGGGATCCCTCAATATATTCCGTATaGGGAACTGTTGGGATCATGACTGGGGGTGAAGGTGAGACTGTG +
Preference number: 1 (lower is better)
Translates to: MAFQGNQGDPSIYSV*GTVGIMTGGEGETV
Trigger: CACAGTCTCACCTTCACCCCCAGTCATGATCCCAACAGTTCCCCATACGGAATATATTGAGGGATCCCCTTGATTGCCCTGAAATGCCAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR CCA 90 bp ATAATGGGGTCTTGGCTCTTCACTGGCTCAGGGATCACTGGACCTTaGTTCTTCACAGGTGCTACAAACACAGAATCATGTCCCTTCAGA +
Preference number: 1 (lower is better)
Translates to: IMGSWLFTGSGITGP*FFTGATNTESCPFR
Trigger: TCTGAAGGGACATGATTCTGTGTTTGTAGCACCTGTGAAGAACCAAGGTCCAGTGATCCCTGAGCCAGTGAAGAGCCAAGACCCCATTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR GCA 90 bp ACTTGGGCAGCATGCAAGCATCCAGTGAACTTGGGAAAGAACATTTaGCTAAGTCCAAAATGGCGTGATGCAAACTGTGGGGCTGTTCAA +
Preference number: 1 (lower is better)
Translates to: TWAACKHPVNLGKNI*LSPKWRDANCGAVQ
Trigger: TTGAACAGCCCCACAGTTTGCATCACGCCATTTTGGACTTAGGCAAATGTTCTTTCCCAAGTTCACTGGATGCTTGCATGCTGCCCAAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR CCA 90 bp GACTCTGATTCTTCAGAGGCTCTGGCAACAGAGGGCTTTGGGCTTTaGCTGGTGCTAAGGGGACAGAATCTTTATTCTTTAAAAGCTCAG +
Preference number: 1 (lower is better)
Translates to: DSDSSEALATEGFGL*LVLRGQNLYSLKAQ
Trigger: CTGAGCTTTTAAAGAATAAAGATTCTGTCCCCTTAGCACCAGCCAAAGCCCAAAGCCCTCTGTTGCCAGAGCCTCTGAAGAATCAGAGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR TCA 90 bp ACTAACATCAGGAATGAAATAGCACCAAGAGAGGGGAGCACTACATaGTCCATAGACAATCTGTGGTATGCAACAACACCCGGGCCACAA +
Preference number: 1 (lower is better)
Translates to: TNIRNEIAPREGSTT*SIDNLWYATTPGPQ
Trigger: TTGTGGCCCGGGTGTTGTTGCATACCACAGATTGTCTATGGATCATGTAGTGCTCCCCTCTCTTGGTGCTATTTCATTCCTGATGTTAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR TCA 90 bp ATTCCAGCAAGACTATACAGCACAGTTTCATGCAGATTAAATATATaGCTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCT +
Preference number: 1 (lower is better)
Translates to: IPARLYSTVSCRLNI*LCLPRRETLPLPAP
Trigger: AGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTTGCTGGAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
3UTR-3UTR TCA 90 bp CGTGGGAGCTCGATCCTTCTCGGGCTCGGGGATCACAGGGCCTGGGTCCTTCCGTGTGGTCCTGAACCTTaGTGGGTGCTGGGGCCACTG +
Preference number: 2 (lower is better)
Translates to: RGSSILLGLGDHRAWVLPCGPEP*WVLGPL
Trigger: CAGTGGCCCCAGCACCCATCAAGGTTCAGGACCACA...CGGAAGGACCCAGGCCCTGTGATCCCCGAGCCCGAGAAGGATCGAGCTCCCACG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR-3UTR TCA 90 bp CGTGGGAGCTCGATCCTTCTCGGGCTCGGGGATCACAGGGCCTGGGTCCTTCCGGATGCTATGTGGTCCTaGACCTTGATGGGTGCTGGG +
Preference number: 2 (lower is better)
Translates to: RGSSILLGLGDHRAWVLPDAMWS*TLMGAG
Trigger: CCCAGCACCCATCAAGGTTCAGGACCACATAGCATC...CGGAAGGACCCAGGCCCTGTGATCCCCGAGCCCGAGAAGGATCGAGCTCCCACG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR-3UTR TCA 90 bp CGTGGGAGCTCGATCCTTCTCGGGCTCGGGGATCACAGGGCCTGGGTCCTTCCGGGAACCACAGGACTCTaGTTCTTCAGAGGCTCTGGC +
Preference number: 2 (lower is better)
Translates to: RGSSILLGLGDHRAWVLPGTTGL*FFRGSG
Trigger: GCCAGAGCCTCTGAAGAATCAGAGTCCTGTGGTTCC...CGGAAGGACCCAGGCCCTGTGATCCCCGAGCCCGAGAAGGATCGAGCTCCCACG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR CAA 90 bp CGCTTGGCAGGACTCGCTACACACACTGGCCACATGCTCAGCACATaGACCTTTCTGTGGAGCAGAGCAAGAGCTCGGTCGGGGCTGGAG +
Preference number: 2 (lower is better)
Translates to: RLAGLATHTGHMLST*TFLWSRARARSGLE
Trigger: CTCCAGCCCCGACCGAGCTCTTGCTCTGCTCCACAGAAAGGTCAATGTGCTGAGCATGTGGCCAGTGTGTGTAGCGAGTCCTGCCAAGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR-3UTR CCA 90 bp GCACACGAAGCCTTCCCTGTCTGCACGGAGAGACTTTGTTGGCTCTTTGGAGCTCAACTGCAGGGCTCCTaGGACCCTTGGAACCAAGGC +
Preference number: 2 (lower is better)
Translates to: AHEAFPVCTERLCWLFGAQLQGS*DPWNQG
Trigger: GCCTTGGTTCCAAGGGTCCCAGGAGCCCTGCAGTTG...AGCTCCAAAGAGCCAACAAAGTCTCTCCGTGCAGACAGGGAAGGCTTCGTGTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR-3UTR TCA 90 bp TCCTGGCACCACAGGGCCTTGATCCTTCAAAGGCTCTTGGCCTTTTGGAAGACCGGGGCCACAGAGCCTTaGTCCTTGTGTGGCTCTTTG +
Preference number: 2 (lower is better)
Translates to: SWHHRALILQRLLAFWKTGATEP*SLCGSL
Trigger: CAAAGAGCCACACAAGGATCAAGGCTCTGTGGCCCC...GGTCTTCCAAAAGGCCAAGAGCCTTTGAAGGATCAAGGCCCTGTGGTGCCAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR-3UTR CCA 90 bp ACCTTCCCAAACTGCAGGGACCTGAAGAGACCAAGGAGCCATCAGATCTGCCCTGGCTCCTGGGACCCTTaGAACCAAGGCAGATGGGAA +
Preference number: 2 (lower is better)
Translates to: TFPNCRDLKRPRSHQICPGSWDP*NQGRWE
Trigger: TTCCCATCTGCCTTGGTTCCAAGGGTCCCAGGAGCC...AGGGCAGATCTGATGGCTCCTTGGTCTCTTCAGGTCCCTGCAGTTTGGGAAGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR-3UTR CCA 90 bp CTGGGAGCTGGGGCAGAGAACGGGAAGCCGGGCATAGCTTCCAGGAGTTTTGCAACATTGACCTTTCTGTaGAGCAGAGCAAGAGCTCGG +
Preference number: 2 (lower is better)
Translates to: LGAGAENGKPGIASRSFATLTFL*SRARAR
Trigger: CCGAGCTCTTGCTCTGCTCCACAGAAAGGTCAATGT...TGCAAAACTCCTGGAAGCTATGCCCGGCTTCCCGTTCTCTGCCCCAGCTCCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR-3UTR TCA 90 bp TCGGGGACCATAGGAGCTTCGTTCTTCAAAGAGGCCATGATGGAGACATGCTGGGGGGCCACAGAGCCTTaGTCCTTGTGTGGCTCTTTG +
Preference number: 2 (lower is better)
Translates to: SGTIGASFFKEAMMETCWGATEP*SLCGSL
Trigger: CAAAGAGCCACACAAGGATCAAGGCTCTGTGGCCCC...CCAGCATGTCTCCATCATGGCCTCTTTGAAGAACGAAGCTCCTATGGTCCCCGA
56% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR-3UTR GCA 90 bp GGTGCACACGAAGCCTTCCCTGTCTGCACGGAGAGACTTTGTTGGCTCTTTGGAAAAGCGGGCTCCCATTaGTCAGAGCTCCTCCTACAC +
Preference number: 2 (lower is better)
Translates to: GAHEAFPVCTERLCWLFGKAGSH*SELLLH
Trigger: GTGTAGGAGGAGCTCTGAGCAATGGGAGCCCGCTTT...TCCAAAGAGCCAACAAAGTCTCTCCGTGCAGACAGGGAAGGCTTCGTGTGCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR-3UTR CCA 90 bp TCGGGGACCATAGGAGCTTCGTTCTTCAAAGAGGCCATGATGGAGACATGCTGGGAGGGCTTTGGGCTTTaGCTGGTGCTAAGGGGACAG +
Preference number: 2 (lower is better)
Translates to: SGTIGASFFKEAMMETCWEGFGL*LVLRGQ
Trigger: CTGTCCCCTTAGCACCAGCCAAAGCCCAAAGCCCTC...CCAGCATGTCTCCATCATGGCCTCTTTGAAGAACGAAGCTCCTATGGTCCCCGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR-3UTR GCA 90 bp GGTGCACACGAAGCCTTCCCTGTCTGCACGGAGAGACTTTGTTGGCTCTTTGGATCCACCTTCCCAAACTaGAGGGACCTGAAGAGACCA +
Preference number: 2 (lower is better)
Translates to: GAHEAFPVCTERLCWLFGSTFPN*RDLKRP
Trigger: TGGTCTCTTCAGGTCCCTGCAGTTTGGGAAGGTGGA...TCCAAAGAGCCAACAAAGTCTCTCCGTGCAGACAGGGAAGGCTTCGTGTGCACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR-3UTR TCA 90 bp AGGGTGAACAGAGAACAGAGGGAAATGTACGAAGTGAGGAACGGGCTTGGTCACGCAGTAACTAAGACCTaGCCCAACCCAGACCCACAG +
Preference number: 2 (lower is better)
Translates to: RVNREQREMYEVRNGLGHAVTKT*PNPDPQ
Trigger: CTGTGGGTCTGGGTTGGGTCAGGTCTTAGTTACTGC...GTGACCAAGCCCGTTCCTCACTTCGTACATTTCCCTCTGTTCTCTGTTCACCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR-3UTR TCA 90 bp AGGGTGAACAGAGAACAGAGGGAAATGTACGAAGTGAGGAACGGGCTTGGTCACTCACAGTCCAGGCCCTaGGTCAGAAAAGACTCAGGC +
Preference number: 2 (lower is better)
Translates to: RVNREQREMYEVRNGLGHSQSRP*VRKDSG
Trigger: GCCTGAGTCTTTTCTGACTCAGGGCCTGGACTGTGA...GTGACCAAGCCCGTTCCTCACTTCGTACATTTCCCTCTGTTCTCTGTTCACCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR-3UTR GCA 90 bp GAAATGTACGAAGTGAGGAACGGGCTTGGTCACCTGCAGAGAGGTGACACCAAATGTTCAAGGGGAGGATaGCCTGCAGCAGACACTTCC +
Preference number: 2 (lower is better)
Translates to: EMYEVRNGLGHLQRGDTKCSRGG*PAADTS
Trigger: GGAAGTGTCTGCTGCAGGGCATCCTCCCCTTGAACA...TTTGGTGTCACCTCTCTGCAGGTGACCAAGCCCGTTCCTCACTTCGTACATTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR-3UTR GCA 90 bp TTCCAGCTCTCTCGCTCCAGGGTGAACAGAGAACAGAGGGAAATGTACGAAGTGACGGGCTTGGTCACCTaGAGAGAGGTGACACCAAAC +
Preference number: 2 (lower is better)
Translates to: FQLSRSRVNREQREMYEVTGLVT*REVTPN
Trigger: GTTTGGTGTCACCTCTCTGCAGGTGACCAAGCCCGT...CACTTCGTACATTTCCCTCTGTTCTCTGTTCACCCTGGAGCGAGAGAGCTGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR-3UTR CCA 90 bp TCCACTGCCAGCTCCTTCATGGCATTTCAGGGCAATCAAGGGGATCCCTCAATAGGCAACAGAGGGCTTTaGGCTTTGGCTGGTGCTAAG +
Preference number: 2 (lower is better)
Translates to: STASSFMAFQGNQGDPSIGNRGL*ALAGAK
Trigger: CTTAGCACCAGCCAAAGCCCAAAGCCCTCTGTTGCC...TATTGAGGGATCCCCTTGATTGCCCTGAAATGCCATGAAGGAGCTGGCAGTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR-3UTR CCA 90 bp TCGGGGACCATAGGAGCTTCGTTCTTCAAAGAGGCCATGATGGAGACATGCTGGTCCTTCAAAGGCTCTTaGCCTTTTGGAAGACCTGGG +
Preference number: 2 (lower is better)
Translates to: SGTIGASFFKEAMMETCWSFKGS*PFGRPG
Trigger: CCCAGGTCTTCCAAAAGGCCAAGAGCCTTTGAAGGA...CCAGCATGTCTCCATCATGGCCTCTTTGAAGAACGAAGCTCCTATGGTCCCCGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR-3UTR CCA 90 bp GGCATTTCAGGGCAATCAAGGGGATCCCTCAATATATTCCGTATGGGGAACTGTACCTTGGTCCTTTGTTaGGGCTGGCACCAGGGGATC +
Preference number: 2 (lower is better)
Translates to: GISGQSRGSLNIFRMGNCTLVLC*GWHQGI
Trigger: GATCCCCTGGTGCCAGCCCCAACAAAGGACCAAGGT...ACAGTTCCCCATACGGAATATATTGAGGGATCCCCTTGATTGCCCTGAAATGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR CAA 90 bp AGAGCTGTTTCTAAGCTTCGAAAGTCAAAGATGCTGGCTAAGCGCTaGGCAGGACTCGCTACACACACTGGCCACATGCTCAGCACATTG +
Preference number: 2 (lower is better)
Translates to: RAVSKLRKSKMLAKR*AGLATHTGHMLSTL
Trigger: CAATGTGCTGAGCATGTGGCCAGTGTGTGTAGCGAGTCCTGCCAAGCGCTTAGCCAGCATCTTTGACTTTCGAAGCTTAGAAACAGCTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR CAA 90 bp AGGAACGGGCTTGGTCACCTGCAGAGAGGTGACACCAAACATTGCTaGAGGAACCACGGTCAGTTTTGTCCAGTACACTTGAGAGACAGA +
Preference number: 2 (lower is better)
Translates to: RNGLGHLQRGDTKHC*RNHGQFCPVHLRDR
Trigger: TCTGTCTCTCAAGTGTACTGGACAAAACTGACCGTGGTTCCTCAAGCAATGTTTGGTGTCACCTCTCTGCAGGTGACCAAGCCCGTTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR-3UTR TCA 90 bp AACAGAGGGCTTTGGGCTTTGGCTGGTGCTAAGGGGACAGAATCTTTATTCTTTGGCACCACAGGGCCTTaGTCCTTCAAAGGCTCTTGG +
Preference number: 2 (lower is better)
Translates to: NRGLWALAGAKGTESLFFGTTGP*SFKGSW
Trigger: CCAAGAGCCTTTGAAGGATCAAGGCCCTGTGGTGCC...AAAGAATAAAGATTCTGTCCCCTTAGCACCAGCCAAAGCCCAAAGCCCTCTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR-3UTR CCA 90 bp GGTGCTACAAACACAGAATCATGTCCCTTCAGATACCTGGGGGCTGTTGTATCTAGGCTCTTGGCCTTTTaGAAGACCTGGGGCCACAGA +
Preference number: 2 (lower is better)
Translates to: GATNTESCPFRYLGAVVSRLLAF*KTWGHR
Trigger: TCTGTGGCCCCAGGTCTTCCAAAAGGCCAAGAGCCT...AGATACAACAGCCCCCAGGTATCTGAAGGGACATGATTCTGTGTTTGTAGCACC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR-3UTR CCA 90 bp GGGGACCCTTGGCTAGATGCTGTGCCACCAGTAGTAAGAGTCGGTGGCCTCAGATGTTTGTTGGTTGGTTaGTTTAAATATAGGGGGTGG +
Preference number: 2 (lower is better)
Translates to: GDPWLDAVPPVVRVGGLRCLLVG*FKYRGW
Trigger: CCACCCCCTATATTTAAACCAACCAACCAACAAACA...TCTGAGGCCACCGACTCTTACTACTGGTGGCACAGCATCTAGCCAAGGGTCCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR-3UTR CCA 90 bp TGGCCACATGCTCAGCACATTGACCTTTCTGTGGAGCAGAGCAAGAGCTCGGTCCTCTTAACTAGGTGTTaGGCACATCAGCAGTATGCT +
Preference number: 2 (lower is better)
Translates to: WPHAQHIDLSVEQSKSSVLLTRC*AHQQYA
Trigger: AGCATACTGCTGATGTGCCCAACACCTAGTTAAGAG...GACCGAGCTCTTGCTCTGCTCCACAGAAAGGTCAATGTGCTGAGCATGTGGCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR CAA 90 bp GATAATGGGGTCTTGGCTCTTCACTGGCTCAGGGATCACTGGACCTaGGTTCTTCACAGGTGCTACAAACACAGAATCATGTCCCTTCAG +
Preference number: 2 (lower is better)
Translates to: DNGVLALHWLRDHWT*VLHRCYKHRIMSLQ
Trigger: CTGAAGGGACATGATTCTGTGTTTGTAGCACCTGTGAAGAACCAAGGTCCAGTGATCCCTGAGCCAGTGAAGAGCCAAGACCCCATTATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR-3UTR CCA 90 bp TCGGGGACCATAGGAGCTTCGTTCTTCAAAGAGGCCATGATGGAGACATGCTGGATCCTTAGTGCTTGCTaGAACCACAGGACTCTGATT +
Preference number: 2 (lower is better)
Translates to: SGTIGASFFKEAMMETCWILSAC*NHRTLI
Trigger: AATCAGAGTCCTGTGGTTCCAGCAAGCACTAAGGAT...CCAGCATGTCTCCATCATGGCCTCTTTGAAGAACGAAGCTCCTATGGTCCCCGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR-3UTR CCA 90 bp ATGGCATTTCAGGGCAATCAAGGGGATCCCTCAATATATTCCGTATGGGGAACTGGGATAATGGGGTCTTaGCTCTTCACTGGCTCAGGG +
Preference number: 2 (lower is better)
Translates to: MAFQGNQGDPSIYSVWGTGIMGS*LFTGSG
Trigger: CCCTGAGCCAGTGAAGAGCCAAGACCCCATTATCCC...AGTTCCCCATACGGAATATATTGAGGGATCCCCTTGATTGCCCTGAAATGCCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR-3UTR TCA 90 bp TGGGCTTTGGCTGGTGCTAAGGGGACAGAATCTTTATTCTTTAAAAGCTCAGATGGGGCCACAGAGCCTTaGTCCTTGTGTGGCTCTTTG +
Preference number: 2 (lower is better)
Translates to: WALAGAKGTESLFFKSSDGATEP*SLCGSL
Trigger: CAAAGAGCCACACAAGGATCAAGGCTCTGTGGCCCC...ATCTGAGCTTTTAAAGAATAAAGATTCTGTCCCCTTAGCACCAGCCAAAGCCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR-3UTR TCA 90 bp GGTGCTACAAACACAGAATCATGTCCCTTCAGATACCTGGGGGCTGTTGTATCTGGTGTTGGGAAGCTTTaGTCCTTAGTGCTTGCTGGA +
Preference number: 2 (lower is better)
Translates to: GATNTESCPFRYLGAVVSGVGKL*SLVLAG
Trigger: TCCAGCAAGCACTAAGGATCAAAGCTTCCCAACACC...AGATACAACAGCCCCCAGGTATCTGAAGGGACATGATTCTGTGTTTGTAGCACC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR-3UTR TCA 90 bp TTCCAGCTCTCTCGCTCCAGGGTGAACAGAGAACAGAGGGAAATGTACGAAGTGAGGCTTGCCCAGTGCTaGTGCATTCATTTTCAAACA +
Preference number: 2 (lower is better)
Translates to: FQLSRSRVNREQREMYEVRLAQC*CIHFQT
Trigger: TGTTTGAAAATGAATGCATCAGCACTGGGCAAGCCT...CACTTCGTACATTTCCCTCTGTTCTCTGTTCACCCTGGAGCGAGAGAGCTGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR CAA 90 bp CACCAGGGGATCCTGACCCTTCAAAGGTACTGGGATTATAGGGTCTaGATTCTTTATAGGCCCAAGAACCACAGGGCTTTGATTCTTTGG +
Preference number: 2 (lower is better)
Translates to: HQGILTLQRYWDYRV*ILYRPKNHRALILW
Trigger: CCAAAGAATCAAAGCCCTGTGGTTCTTGGGCCTATAAAGAATCAAGACCCTATAATCCCAGTACCTTTGAAGGGTCAGGATCCCCTGGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR-3UTR TCA 90 bp ATTTGCTTTCTGAGCAGGCACAGACCACGTGACGTCACAATCAATTGGCTATACACATGCTCAGCACATTaGCCTTTCTGTGGAGCAGAG +
Preference number: 2 (lower is better)
Translates to: ICFLSRHRPRDVTINWLYTCSAH*PFCGAE
Trigger: CTCTGCTCCACAGAAAGGTCAATGTGCTGAGCATGT...GTATAGCCAATTGATTGTGACGTCACGTGGTCTGTGCCTGCTCAGAAAGCAAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR-3UTR GCA 90 bp CAGTTTTGTCCAGTACACTTGAGAGACAGAATAAGACCTGGAGAGCTTTGTTTGAAGGGGAGGATGCCCTaGAGCAGACACTTCCAAGTC +
Preference number: 2 (lower is better)
Translates to: QFCPVHLRDRIRPGELCLKGRMP*SRHFQV
Trigger: GACTTGGAAGTGTCTGCTGCAGGGCATCCTCCCCTT...CAAACAAAGCTCTCCAGGTCTTATTCTGTCTCTCAAGTGTACTGGACAAAACTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR-3UTR CCA 90 bp ATGGCATTTCAGGGCAATCAAGGGGATCCCTCAATATATTCCGTATGGGGAACTAGGAACTTGATCTTTTaGCAGTCCTGGCACCACAGG +
Preference number: 2 (lower is better)
Translates to: MAFQGNQGDPSIYSVWGTRNLIF*QSWHHR
Trigger: CCTGTGGTGCCAGGACTGCCAAAAGATCAAGTTCCT...AGTTCCCCATACGGAATATATTGAGGGATCCCCTTGATTGCCCTGAAATGCCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR-3UTR CCA 90 bp TACTGGGATTATAGGGTCTTGATTCTTTATAGGCCCAAGAACCACAGGGCTTTGTCCTTCAAAGGCTCTTaGCCTTTTGGAAGACCTGGG +
Preference number: 2 (lower is better)
Translates to: YWDYRVLILYRPKNHRALSFKGS*PFGRPG
Trigger: CCCAGGTCTTCCAAAAGGCCAAGAGCCTTTGAAGGA...CAAAGCCCTGTGGTTCTTGGGCCTATAAAGAATCAAGACCCTATAATCCCAGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR-3UTR CCA 90 bp TGGGCTTTGGCTGGTGCTAAGGGGACAGAATCTTTATTCTTTAAAAGCTCAGATATCTTTTGGCAGTCCTaGCACCACAGGGCCTTGATC +
Preference number: 2 (lower is better)
Translates to: WALAGAKGTESLFFKSSDIFWQS*HHRALI
Trigger: GATCAAGGCCCTGTGGTGCCAGGACTGCCAAAAGAT...ATCTGAGCTTTTAAAGAATAAAGATTCTGTCCCCTTAGCACCAGCCAAAGCCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR-3UTR CCA 90 bp CAAAGGTACTGGGATTATAGGGTCTTGATTCTTTATAGGCCCAAGAACCACAGGCCGAGGTGCTGGTGTTaGGAAGCTTTGATCCTTAGT +
Preference number: 2 (lower is better)
Translates to: QRYWDYRVLILYRPKNHRPRCWC*EALILS
Trigger: ACTAAGGATCAAAGCTTCCCAACACCAGCACCTCGG...CCTGTGGTTCTTGGGCCTATAAAGAATCAAGACCCTATAATCCCAGTACCTTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR-3UTR CCA 90 bp TACTGGGATTATAGGGTCTTGATTCTTTATAGGCCCAAGAACCACAGGGCTTTGGTCCCTTCAGATACCTaGGGGCTGTTGTATCTGTAC +
Preference number: 2 (lower is better)
Translates to: YWDYRVLILYRPKNHRALVPSDT*GLLYLY
Trigger: GTACAGATACAACAGCCCCCAGGTATCTGAAGGGAC...CAAAGCCCTGTGGTTCTTGGGCCTATAAAGAATCAAGACCCTATAATCCCAGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR-3UTR TCA 90 bp ATTTGCTTTCTGAGCAGGCACAGACCACGTGACGTCACAATCAATTGGCTATACCAGTGGCCTATTACTTaGCACACTATTCAAAGCCCA +
Preference number: 2 (lower is better)
Translates to: ICFLSRHRPRDVTINWLYQWPIT*HTIQSP
Trigger: TGGGCTTTGAATAGTGTGTCAAGTAATAGGCCACTG...GTATAGCCAATTGATTGTGACGTCACGTGGTCTGTGCCTGCTCAGAAAGCAAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR-3UTR CCA 90 bp TGGGCTTTGGCTGGTGCTAAGGGGACAGAATCTTTATTCTTTAAAAGCTCAGATGCCTTGATCCTTGTGTaGCTCTTTGGTTACAGGACC +
Preference number: 2 (lower is better)
Translates to: WALAGAKGTESLFFKSSDALILV*LFGYRT
Trigger: GGTCCTGTAACCAAAGAGCCACACAAGGATCAAGGC...ATCTGAGCTTTTAAAGAATAAAGATTCTGTCCCCTTAGCACCAGCCAAAGCCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR-3UTR CCA 90 bp ATTTGCTTTCTGAGCAGGCACAGACCACGTGACGTCACAATCAATTGGCTATACGCACCAGGACATTTCTaGTGGATAGTTTGTGTTTCC +
Preference number: 2 (lower is better)
Translates to: ICFLSRHRPRDVTINWLYAPGHF*WIVCVS
Trigger: GGAAACACAAACTATCCACCAGAAATGTCCTGGTGC...GTATAGCCAATTGATTGTGACGTCACGTGGTCTGTGCCTGCTCAGAAAGCAAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR-3UTR CCA 90 bp GAAATGTACGAAGTGAGGAACGGGCTTGGTCACCTGCAGAGAGGTGACACCAAAAGACAGAATAAGACCTaGAGAGCTTTGTTTGTAAAC +
Preference number: 2 (lower is better)
Translates to: EMYEVRNGLGHLQRGDTKRQNKT*RALFVN
Trigger: GTTTACAAACAAAGCTCTCCAGGTCTTATTCTGTCT...TTTGGTGTCACCTCTCTGCAGGTGACCAAGCCCGTTCCTCACTTCGTACATTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR CAA 90 bp AGCAAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTaGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATG +
Preference number: 2 (lower is better)
Translates to: SKTIQHSFMQIKYMT*PPQKGNTSTASSFM
Trigger: CATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTTGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
3UTR-3UTR GCA 90 bp TCTGCTAAAAACAAAGGCTTGCCCAGTGCTGATGCATTCATTTTCAAACATGTCAATAAGCGTGCGATGTaGCTTCTCACACCTGACCAC +
Preference number: 2 (lower is better)
Translates to: SAKNKGLPSADAFIFKHVNKRAM*LLTPDH
Trigger: GTGGTCAGGTGTGAGAAGGCACATCGCACGCTTATT...GACATGTTTGAAAATGAATGCATCAGCACTGGGCAAGCCTTTGTTTTTAGCAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR-3UTR CCA 90 bp TGGCTGGTGCTAAGGGGACAGAATCTTTATTCTTTAAAAGCTCAGATGCTATGTAGGAACTTGATCTTTTaGCAGTCCTGGCACCACAGG +
Preference number: 2 (lower is better)
Translates to: WLVLRGQNLYSLKAQMLCRNLIF*QSWHHR
Trigger: CCTGTGGTGCCAGGACTGCCAAAAGATCAAGTTCCT...ACATAGCATCTGAGCTTTTAAAGAATAAAGATTCTGTCCCCTTAGCACCAGCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR-3UTR CCA 90 bp CAGTTTTGTCCAGTACACTTGAGAGACAGAATAAGACCTGGAGAGCTTTGTTTGACTTTGTTGGCTCTTTaGAGCTCCACCTTCCCAAAC +
Preference number: 2 (lower is better)
Translates to: QFCPVHLRDRIRPGELCLTLLAL*SSTFPN
Trigger: GTTTGGGAAGGTGGAGCTCCAAAGAGCCAACAAAGT...CAAACAAAGCTCTCCAGGTCTTATTCTGTCTCTCAAGTGTACTGGACAAAACTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR-3UTR GCA 90 bp TCTGCTAAAAACAAAGGCTTGCCCAGTGCTGATGCATTCATTTTCAAACATGTCCCTACACACTCCACCTaGACACCGAAGGAACAAAAA +
Preference number: 2 (lower is better)
Translates to: SAKNKGLPSADAFIFKHVPTHST*TPKEQK
Trigger: TTTTTGTTCCTTCGGTGTGCAGGTGGAGTGTGTAGG...GACATGTTTGAAAATGAATGCATCAGCACTGGGCAAGCCTTTGTTTTTAGCAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR-3UTR CCA 90 bp CTAAAAACAAAGGCTTGCCCAGTGCTGATGCATTCATTTTCAAACATGTCTCAAGAAAGTCAAAGATGCTaGCTAAGCGCTTGGCAGGAC +
Preference number: 2 (lower is better)
Translates to: LKTKACPVLMHSFSNMSQESQRC*LSAWQD
Trigger: GTCCTGCCAAGCGCTTAGCCAGCATCTTTGACTTTC...TTGAGACATGTTTGAAAATGAATGCATCAGCACTGGGCAAGCCTTTGTTTTTAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR-3UTR CCA 90 bp CAGTTTTGTCCAGTACACTTGAGAGACAGAATAAGACCTGGAGAGCTTTGTTTGGGCATTTCTTGTGAGTaGAGTGAAACATTCAAGAGC +
Preference number: 2 (lower is better)
Translates to: QFCPVHLRDRIRPGELCLGISCE*SETFKS
Trigger: GCTCTTGAATGTTTCACTCCACTCACAAGAAATGCC...CAAACAAAGCTCTCCAGGTCTTATTCTGTCTCTCAAGTGTACTGGACAAAACTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR-3UTR GCA 90 bp CAGTTTTGTCCAGTACACTTGAGAGACAGAATAAGACCTGGAGAGCTTTGTTTGACTTCATTTCTAGTCTaGTCTGCTAAAAACAAAGGC +
Preference number: 2 (lower is better)
Translates to: QFCPVHLRDRIRPGELCLTSFLV*SAKNKG
Trigger: GCCTTTGTTTTTAGCAGAGCAGACTAGAAATGAAGT...CAAACAAAGCTCTCCAGGTCTTATTCTGTCTCTCAAGTGTACTGGACAAAACTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR-3UTR GCA 90 bp CTAAAAACAAAGGCTTGCCCAGTGCTGATGCATTCATTTTCAAACATGTCTCAATTGGGAAAGAACATTTaGCTAAGTCCAAAATGGCGT +
Preference number: 2 (lower is better)
Translates to: LKTKACPVLMHSFSNMSQLGKNI*LSPKWR
Trigger: ACGCCATTTTGGACTTAGGCAAATGTTCTTTCCCAA...TTGAGACATGTTTGAAAATGAATGCATCAGCACTGGGCAAGCCTTTGTTTTTAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR GCA 72 bp GGGCTCGGGGATCACAGGGCCTGGGTCCTTCCGAGGTaGTGGTGTTGGGAAGCTTTGATCCTTAGTGCTTGC +
Preference number: 3 (lower is better)
Translates to: GLGDHRAWVLPR*WCWEALILSAC
Trigger: GCAAGCACTAAGGATCAAAGCTTCCCAACACCAGCACCTCGGAAGGACCCAGGCCCTGTGATCCCCGAGCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR GCA 72 bp TCGGGGCTGGAGGGTGCATCACCACCCTCGCCGTCATaGCTACACACTCCACCTGCACACCGAAGGAACAAA +
Preference number: 3 (lower is better)
Translates to: SGLEGASPPSPS*LHTPPAHRRNK
Trigger: TTTGTTCCTTCGGTGTGCAGGTGGAGTGTGTAGGCATGACGGCGAGGGTGGTGATGCACCCTCCAGCCCCGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR CCA 72 bp CAGTGCACACTGCTTCCCGGGCTCCCAGGGGACCCTTaGCTAGATGCTGTGCCACCAGTAGTAAGAGTCGGT +
Preference number: 3 (lower is better)
Translates to: QCTLLPGLPGDP*LDAVPPVVRVG
Trigger: ACCGACTCTTACTACTGGTGGCACAGCATCTAGCCAAGGGTCCCCTGGGAGCCCGGGAAGCAGTGTGCACTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR CCA 72 bp CTCGGGGATCACAGGGCCTGGGTCCTTCCGAGGTGCTaGTGTTGGGAAGCTTTGATCCTTAGTGCTTGCTGG +
Preference number: 3 (lower is better)
Translates to: LGDHRAWVLPRC*CWEALILSACW
Trigger: CCAGCAAGCACTAAGGATCAAAGCTTCCCAACACCAGCACCTCGGAAGGACCCAGGCCCTGTGATCCCCGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR CCA 72 bp CACACTGGCCACATGCTCAGCACATTGACCTTTCTGTaGAGCAGAGCAAGAGCTCGGTCGGGGCTGGAGGGT +
Preference number: 3 (lower is better)
Translates to: HTGHMLSTLTFL*SRARARSGLEG
Trigger: ACCCTCCAGCCCCGACCGAGCTCTTGCTCTGCTCCACAGAAAGGTCAATGTGCTGAGCATGTGGCCAGTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR CCA 72 bp CTGGGTGTGACAAAGCTTCTTCTGCTGTCTGGGAGCTaGGGCAGAGAACGGGAAGCCGGGCATAGCTTCCAG +
Preference number: 3 (lower is better)
Translates to: LGVTKLLLLSGS*GREREAGHSFQ
Trigger: CTGGAAGCTATGCCCGGCTTCCCGTTCTCTGCCCCAGCTCCCAGACAGCAGAAGAAGCTTTGTCACACCCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR-3UTR CAA 90 bp GGTGCACACGAAGCCTTCCCTGTCTGCACGGAGAGACTTTGTTGGCTCTTTGGAGGGCTCCTGGGACCCTaGGAACCAAGGCAGATGGGA +
Preference number: 3 (lower is better)
Translates to: GAHEAFPVCTERLCWLFGGLLGP*EPRQMG
Trigger: TCCCATCTGCCTTGGTTCCAAGGGTCCCAGGAGCCC...TCCAAAGAGCCAACAAAGTCTCTCCGTGCAGACAGGGAAGGCTTCGTGTGCACC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR-3UTR CAA 90 bp CTGCTGTCTGGGAGCTGGGGCAGAGAACGGGAAGCCGGGCATAGCTTCCAGGAGGACACCAAACATTGCTaGAGGAACCACGGTCAGTTT +
Preference number: 3 (lower is better)
Translates to: LLSGSWGREREAGHSFQEDTKHC*RNHGQF
Trigger: AAACTGACCGTGGTTCCTCAAGCAATGTTTGGTGTC...CTCCTGGAAGCTATGCCCGGCTTCCCGTTCTCTGCCCCAGCTCCCAGACAGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR TCA 72 bp GACTCGCTACACACACTGGCCACATGCTCAGCACATTaGCCTTTCTGTGGAGCAGAGCAAGAGCTCGGTCGG +
Preference number: 3 (lower is better)
Translates to: DSLHTLATCSAH*PFCGAEQELGR
Trigger: CCGACCGAGCTCTTGCTCTGCTCCACAGAAAGGTCAATGTGCTGAGCATGTGGCCAGTGTGTGTAGCGAGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR GCA 72 bp GGAGCTTCGTTCTTCAAAGAGGCCATGATGGAGACATaGTGGTCCTTCCTACGCTCTGGGACCGTGGGAGCT +
Preference number: 3 (lower is better)
Translates to: GASFFKEAMMET*WSFLRSGTVGA
Trigger: AGCTCCCACGGTCCCAGAGCGTAGGAAGGACCAGCATGTCTCCATCATGGCCTCTTTGAAGAACGAAGCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR CCA 72 bp GATCACAGGGCCTGGGTCCTTCCGAGGTGCTGGTGTTaGGAAGCTTTGATCCTTAGTGCTTGCTGGAACCAC +
Preference number: 3 (lower is better)
Translates to: DHRAWVLPRCWC*EALILSACWNH
Trigger: GTGGTTCCAGCAAGCACTAAGGATCAAAGCTTCCCAACACCAGCACCTCGGAAGGACCCAGGCCCTGTGATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR CCA 72 bp GCTTCGTTCTTCAAAGAGGCCATGATGGAGACATGCTaGTCCTTCCTACGCTCTGGGACCGTGGGAGCTCGA +
Preference number: 3 (lower is better)
Translates to: ASFFKEAMMETC*SFLRSGTVGAR
Trigger: TCGAGCTCCCACGGTCCCAGAGCGTAGGAAGGACCAGCATGTCTCCATCATGGCCTCTTTGAAGAACGAAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR CCA 72 bp CACGAAGCCTTCCCTGTCTGCACGGAGAGACTTTGTTaGCTCTTTGGAGCTCCACCTTCCCAAACTGCAGGG +
Preference number: 3 (lower is better)
Translates to: HEAFPVCTERLC*LFGAPPSQTAG
Trigger: CCCTGCAGTTTGGGAAGGTGGAGCTCCAAAGAGCCAACAAAGTCTCTCCGTGCAGACAGGGAAGGCTTCGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR-3UTR CAA 90 bp TCCTGGCACCACAGGGCCTTGATCCTTCAAAGGCTCTTGGCCTTTTGGAAGACCTGGGGCCACAGAGCCTaGATCCTTGTGTGGCTCTTT +
Preference number: 3 (lower is better)
Translates to: SWHHRALILQRLLAFWKTWGHRA*ILVWLF
Trigger: AAAGAGCCACACAAGGATCAAGGCTCTGTGGCCCCA...GGTCTTCCAAAAGGCCAAGAGCCTTTGAAGGATCAAGGCCCTGTGGTGCCAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR TCA 72 bp TCTTGGCCTTTTGGAAGACCTGGGGCCACAGAGCCTTaGTCCTTGTGTGGCTCTTTGGTTACAGGACCTCGG +
Preference number: 3 (lower is better)
Translates to: SWPFGRPGATEP*SLCGSLVTGPR
Trigger: CCGAGGTCCTGTAACCAAAGAGCCACACAAGGATCAAGGCTCTGTGGCCCCAGGTCTTCCAAAAGGCCAAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR GCA 72 bp AGAGACCTGTCTGCTCACCAAGCCTGGCACAAGGTGTaGAGAACACGAACACCGAATGAAGGATCCCTGTGC +
Preference number: 3 (lower is better)
Translates to: RDLSAHQAWHKV*RTRTPNEGSLC
Trigger: GCACAGGGATCCTTCATTCGGTGTTCGTGTTCTGCACACCTTGTGCCAGGCTTGGTGAGCAGACAGGTCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR CCA 72 bp CTTCCCTGTCTGCACGGAGAGACTTTGTTGGCTCTTTaGAGCTCCACCTTCCCAAACTGCAGGGACCTGAAG +
Preference number: 3 (lower is better)
Translates to: LPCLHGETLLAL*SSTFPNCRDLK
Trigger: CTTCAGGTCCCTGCAGTTTGGGAAGGTGGAGCTCCAAAGAGCCAACAAAGTCTCTCCGTGCAGACAGGGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR-3UTR CAA 90 bp TCCACTGCCAGCTCCTTCATGGCATTTCAGGGCAATCAAGGGGATCCCTCAATAAGAGGGCTTTGGGCTTaGGCTGGTGCTAAGGGGACA +
Preference number: 3 (lower is better)
Translates to: STASSFMAFQGNQGDPSIRGLWA*AGAKGT
Trigger: TGTCCCCTTAGCACCAGCCAAAGCCCAAAGCCCTCT...TATTGAGGGATCCCCTTGATTGCCCTGAAATGCCATGAAGGAGCTGGCAGTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR GCA 72 bp TGCAGGGACCTGAAGAGACCAAGGAGCCATCAGATCTaGCCTCTGAACCATTCACCACAGGAGAAAGCAAGC +
Preference number: 3 (lower is better)
Translates to: CRDLKRPRSHQI*PLNHSPQEKAS
Trigger: GCTTGCTTTCTCCTGTGGTGAATGGTTCAGAGGGCAGATCTGATGGCTCCTTGGTCTCTTCAGGTCCCTGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR-3UTR CAA 90 bp GAAATGTACGAAGTGAGGAACGGGCTTGGTCACCTGCAGAGAGGTGACACCAAAAAAAGCGGGCTCCCATaGCTCAGAGCTCCTCCTACA +
Preference number: 3 (lower is better)
Translates to: EMYEVRNGLGHLQRGDTKKSGLP*LRAPPT
Trigger: TGTAGGAGGAGCTCTGAGCAATGGGAGCCCGCTTTT...TTTGGTGTCACCTCTCTGCAGGTGACCAAGCCCGTTCCTCACTTCGTACATTTC
53% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR GCA 72 bp ACTTTGTTGGCTCTTTGGAGCTCCACCTTCCCAAACTaGAGGGACCTGAAGAGACCAAGGAGCCATCAGATC +
Preference number: 3 (lower is better)
Translates to: TLLALWSSTFPN*RDLKRPRSHQI
Trigger: GATCTGATGGCTCCTTGGTCTCTTCAGGTCCCTGCAGTTTGGGAAGGTGGAGCTCCAAAGAGCCAACAAAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR GCA 72 bp GGGCTTGGTCACCTGCAGAGAGGTGACACCAAACATTaGTTGAGGAACCACGGTCAGTTTTGTCCAGTACAC +
Preference number: 3 (lower is better)
Translates to: GLGHLQRGDTKH*LRNHGQFCPVH
Trigger: GTGTACTGGACAAAACTGACCGTGGTTCCTCAAGCAATGTTTGGTGTCACCTCTCTGCAGGTGACCAAGCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR-3UTR CAA 90 bp GGTGCTACAAACACAGAATCATGTCCCTTCAGATACCTGGGGGCTGTTGTATCTAAGGCTCTTGGCCTTTaGGAAGACCTGGGGCCACAG +
Preference number: 3 (lower is better)
Translates to: GATNTESCPFRYLGAVVSKALGL*EDLGPQ
Trigger: CTGTGGCCCCAGGTCTTCCAAAAGGCCAAGAGCCTT...AGATACAACAGCCCCCAGGTATCTGAAGGGACATGATTCTGTGTTTGTAGCACC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR-3UTR CAA 90 bp GGCATTTCAGGGCAATCAAGGGGATCCCTCAATATATTCCGTATGGGGAACTGTAAGGCTCTTGGCCTTTaGGAAGACCTGGGGCCACAG +
Preference number: 3 (lower is better)
Translates to: GISGQSRGSLNIFRMGNCKALGL*EDLGPQ
Trigger: CTGTGGCCCCAGGTCTTCCAAAAGGCCAAGAGCCTT...ACAGTTCCCCATACGGAATATATTGAGGGATCCCCTTGATTGCCCTGAAATGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR-3UTR CAA 90 bp GGTGCTACAAACACAGAATCATGTCCCTTCAGATACCTGGGGGCTGTTGTATCTAGAGGGCTTTGGGCTTaGGCTGGTGCTAAGGGGACA +
Preference number: 3 (lower is better)
Translates to: GATNTESCPFRYLGAVVSRGLWA*AGAKGT
Trigger: TGTCCCCTTAGCACCAGCCAAAGCCCAAAGCCCTCT...AGATACAACAGCCCCCAGGTATCTGAAGGGACATGATTCTGTGTTTGTAGCACC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR TCA 72 bp TATGGCAAACTACAGTGCACACAACACCAATTCCACTaGGTCACGGCACATGTGGGGTCGTCATGCAGCTCT +
Preference number: 3 (lower is better)
Translates to: YGKLQCTQHQFH*VTAHVGSSCSS
Trigger: AGAGCTGCATGACGACCCCACATGTGCCGTGACTCAGTGGAATTGGTGTTGTGTGCACTGTAGTTTGCCATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR GCA 72 bp AGGTGCTGGTGTTGGGAAGCTTTGATCCTTAGTGCTTaGTGGAACCACAGGACTCTGATTCTTCAGAGGCTC +
Preference number: 3 (lower is better)
Translates to: RCWCWEALILSA*WNHRTLILQRL
Trigger: GAGCCTCTGAAGAATCAGAGTCCTGTGGTTCCAGCAAGCACTAAGGATCAAAGCTTCCCAACACCAGCACCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR GCA 72 bp TATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTaGCAGCTCCTTCATGGCATTTCAGGGCAATCAAGG +
Preference number: 3 (lower is better)
Translates to: YDFASPEGKHFH*QLLHGISGQSR
Trigger: CCTTGATTGCCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR CCA 72 bp TTGATCCTTCAAAGGCTCTTGGCCTTTTGGAAGACCTaGGGCCACAGAGCCTTGATCCTTGTGTGGCTCTTT +
Preference number: 3 (lower is better)
Translates to: LILQRLLAFWKT*GHRALILVWLF
Trigger: AAAGAGCCACACAAGGATCAAGGCTCTGTGGCCCCAGGTCTTCCAAAAGGCCAAGAGCCTTTGAAGGATCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR CCA 72 bp TGCTGGTGTTGGGAAGCTTTGATCCTTAGTGCTTGCTaGAACCACAGGACTCTGATTCTTCAGAGGCTCTGG +
Preference number: 3 (lower is better)
Translates to: CWCWEALILSAC*NHRTLILQRLW
Trigger: CCAGAGCCTCTGAAGAATCAGAGTCCTGTGGTTCCAGCAAGCACTAAGGATCAAAGCTTCCCAACACCAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR CCA 72 bp AATGGGGTCTTGGCTCTTCACTGGCTCAGGGATCACTaGACCTTGGTTCTTCACAGGTGCTACAAACACAGA +
Preference number: 3 (lower is better)
Translates to: NGVLALHWLRDH*TLVLHRCYKHR
Trigger: TCTGTGTTTGTAGCACCTGTGAAGAACCAAGGTCCAGTGATCCCTGAGCCAGTGAAGAGCCAAGACCCCATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR CCA 72 bp CAGGGCAATCAAGGGGATCCCTCAATATATTCCGTATaGGGAACTGTTGGGATCATGACTGGGGGTGAAGGT +
Preference number: 3 (lower is better)
Translates to: QGNQGDPSIYSV*GTVGIMTGGEG
Trigger: ACCTTCACCCCCAGTCATGATCCCAACAGTTCCCCATACGGAATATATTGAGGGATCCCCTTGATTGCCCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR CCA 72 bp CCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATaGCATTTCAGGGCAATCAAGGGGATCCCTCAATAT +
Preference number: 3 (lower is better)
Translates to: PRRETLPLPAPS*HFRAIKGIPQY
Trigger: ATATTGAGGGATCCCCTTGATTGCCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR-3UTR CAA 90 bp TTCCAGCTCTCTCGCTCCAGGGTGAACAGAGAACAGAGGGAAATGTACGAAGTGGCTAAAAACAAAGGCTaGCCCAGTGCTGATGCATTC +
Preference number: 3 (lower is better)
Translates to: FQLSRSRVNREQREMYEVAKNKG*PSADAF
Trigger: GAATGCATCAGCACTGGGCAAGCCTTTGTTTTTAGC...CACTTCGTACATTTCCCTCTGTTCTCTGTTCACCCTGGAGCGAGAGAGCTGGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR TCA 72 bp TCTTTAAAAGCTCAGATGCTATGTGGTCCTGAACCTTaGTGGGTGCTGGGGCCACTGGACCTAGATCCTTCA +
Preference number: 3 (lower is better)
Translates to: SLKAQMLCGPEP*WVLGPLDLDPS
Trigger: TGAAGGATCTAGGTCCAGTGGCCCCAGCACCCATCAAGGTTCAGGACCACATAGCATCTGAGCTTTTAAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR CCA 72 bp ATAATTTCTCCCATAAGAAACCAACTGCAGGGCTCCTaGGACCCTTGGAACCAAGGCAGATGGGAAGTCTCT +
Preference number: 3 (lower is better)
Translates to: IISPIRNQLQGS*DPWNQGRWEVS
Trigger: AGAGACTTCCCATCTGCCTTGGTTCCAAGGGTCCCAGGAGCCCTGCAGTTGGTTTCTTATGGGAGAAATTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR CCA 72 bp CAAGAGCTGTTTCTAAGCTTCGAAAGTCAAAGATGCTaGCTAAGCGCTTGGCAGGACTCGCTACACACACTG +
Preference number: 3 (lower is better)
Translates to: QELFLSFESQRC*LSAWQDSLHTL
Trigger: CAGTGTGTGTAGCGAGTCCTGCCAAGCGCTTAGCCAGCATCTTTGACTTTCGAAGCTTAGAAACAGCTCTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR-3UTR CAA 90 bp GGTGCTACAAACACAGAATCATGTCCCTTCAGATACCTGGGGGCTGTTGTATCTATCCTTCAAAGGCTCTaGGCCTTTTGGAAGACCTGG +
Preference number: 3 (lower is better)
Translates to: GATNTESCPFRYLGAVVSILQRL*AFWKTW
Trigger: CCAGGTCTTCCAAAAGGCCAAGAGCCTTTGAAGGAT...AGATACAACAGCCCCCAGGTATCTGAAGGGACATGATTCTGTGTTTGTAGCACC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR-3UTR CAA 90 bp TACTGGGATTATAGGGTCTTGATTCTTTATAGGCCCAAGAACCACAGGGCTTTGTGGCACCACAGGGCCTaGATCCTTCAAAGGCTCTTG +
Preference number: 3 (lower is better)
Translates to: YWDYRVLILYRPKNHRALWHHRA*ILQRLL
Trigger: CAAGAGCCTTTGAAGGATCAAGGCCCTGTGGTGCCA...CAAAGCCCTGTGGTTCTTGGGCCTATAAAGAATCAAGACCCTATAATCCCAGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR-3UTR CAA 90 bp TTCCAGCTCTCTCGCTCCAGGGTGAACAGAGAACAGAGGGAAATGTACGAAGTGCTACAGTTGGAGCACTaGATAGAGTCTCTGGTAAAC +
Preference number: 3 (lower is better)
Translates to: FQLSRSRVNREQREMYEVLQLEH*IESLVN
Trigger: GTTTACCAGAGACTCTATCAAGTGCTCCAACTGTAG...CACTTCGTACATTTCCCTCTGTTCTCTGTTCACCCTGGAGCGAGAGAGCTGGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR CCA 72 bp TCTTCAGAGGCTCTGGCAACAGAGGGCTTTGGGCTTTaGCTGGTGCTAAGGGGACAGAATCTTTATTCTTTA +
Preference number: 3 (lower is better)
Translates to: SSEALATEGFGL*LVLRGQNLYSL
Trigger: TAAAGAATAAAGATTCTGTCCCCTTAGCACCAGCCAAAGCCCAAAGCCCTCTGTTGCCAGAGCCTCTGAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR-3UTR CAA 90 bp TCGGGGACCATAGGAGCTTCGTTCTTCAAAGAGGCCATGATGGAGACATGCTGGATTAAATATATGACTTaGCCTCCCCAGAAGGGAAAC +
Preference number: 3 (lower is better)
Translates to: SGTIGASFFKEAMMETCWIKYMT*PPQKGN
Trigger: GTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAAT...CCAGCATGTCTCCATCATGGCCTCTTTGAAGAACGAAGCTCCTATGGTCCCCGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR-3UTR CAA 90 bp TGGGCTTTGGCTGGTGCTAAGGGGACAGAATCTTTATTCTTTAAAAGCTCAGATTGGCACCACAGGGCCTaGATCCTTCAAAGGCTCTTG +
Preference number: 3 (lower is better)
Translates to: WALAGAKGTESLFFKSSDWHHRA*ILQRLL
Trigger: CAAGAGCCTTTGAAGGATCAAGGCCCTGTGGTGCCA...ATCTGAGCTTTTAAAGAATAAAGATTCTGTCCCCTTAGCACCAGCCAAAGCCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR-3UTR CAA 90 bp TACTGGGATTATAGGGTCTTGATTCTTTATAGGCCCAAGAACCACAGGGCTTTGATGGGACCTTGGTCCTaGGCTAGTGCTGGGATAATG +
Preference number: 3 (lower is better)
Translates to: YWDYRVLILYRPKNHRALMGPWS*ASAGIM
Trigger: CATTATCCCAGCACTAGCCAAGGACCAAGGTCCCAT...CAAAGCCCTGTGGTTCTTGGGCCTATAAAGAATCAAGACCCTATAATCCCAGTA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR TCA 72 bp TCTTTATTCTTTAAAAGCTCAGATGCTATGTGGTCCTaGACCTTGATGGGTGCTGGGGCCACTGGACCTAGA +
Preference number: 3 (lower is better)
Translates to: SLFFKSSDAMWS*TLMGAGATGPR
Trigger: TCTAGGTCCAGTGGCCCCAGCACCCATCAAGGTTCAGGACCACATAGCATCTGAGCTTTTAAAGAATAAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR-3UTR CAA 90 bp TTCCAGCTCTCTCGCTCCAGGGTGAACAGAGAACAGAGGGAAATGTACGAAGTGAAGACCTGGAGAGCTTaGTTTGTAAACAGTAGAAAT +
Preference number: 3 (lower is better)
Translates to: FQLSRSRVNREQREMYEVKTWRA*FVNSRN
Trigger: ATTTCTACTGTTTACAAACAAAGCTCTCCAGGTCTT...CACTTCGTACATTTCCCTCTGTTCTCTGTTCACCCTGGAGCGAGAGAGCTGGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR CCA 72 bp TTGGCTAGATGCTGTGCCACCAGTAGTAAGAGTCGGTaGCCTCAGAAACATAATTTCTCCCATAAGAAACCA +
Preference number: 3 (lower is better)
Translates to: LARCCATSSKSR*PQKHNFSHKKP
Trigger: TGGTTTCTTATGGGAGAAATTATGTTTCTGAGGCCACCGACTCTTACTACTGGTGGCACAGCATCTAGCCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
3UTR TCA 72 bp AGACTATACAGCACAGTTTCATGCAGATTAAATATATaGCTTTGCCTCCCCAGAAGGGAAACACTTCCACTG +
Preference number: 3 (lower is better)
Translates to: RLYSTVSCRLNI*LCLPRRETLPL
Trigger: CAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR GCA 90 bp CTGCTGTCTGGGAGCTGGGGCAGAGAACGGGAAGCCGGGCATAGCTTCCAGGAGTCTCCCTGGGCTGGCTaGGTCTCTATGGCGACAGCA +
Preference number: 4 (lower is better)
Translates to: LLSGSWGREREAGHSFQESPWAG*VSMATA
Trigger: TGCTGTCGCCATAGAGACGCAGCCAGCCCAGGGAGA...CTCCTGGAAGCTATGCCCGGCTTCCCGTTCTCTGCCCCAGCTCCCAGACAGCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR GCA 90 bp CTGGGAGCTGGGGCAGAGAACGGGAAGCCGGGCATAGCTTCCAGGAGTTTTGCACTCCTTCAGGCCCTGTaGCTTGGGCATGGGCAGCGG +
Preference number: 4 (lower is better)
Translates to: LGAGAENGKPGIASRSFALLQAL*LGHGQR
Trigger: CCGCTGCCCATGCCCAAGGCACAGGGCCTGAAGGAG...TGCAAAACTCCTGGAAGCTATGCCCGGCTTCCCGTTCTCTGCCCCAGCTCCCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR GCA 90 bp ATCCTTCTCGGGCTCGGGGATCACAGGGCCTGGGTCCTTCCGAGGTGCTGGTGTACCTCCTCCCGGATTTaGCTGTTGAGGGCATCTGCC +
Preference number: 4 (lower is better)
Translates to: ILLGLGDHRAWVLPRCWCTSSRI*LLRASA
Trigger: GGCAGATGCCCTCAACAGGCAAATCCGGGAGGAGGT...ACACCAGCACCTCGGAAGGACCCAGGCCCTGTGATCCCCGAGCCCGAGAAGGAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
CDS-3UTR CCA 90 bp ATTGACCTTTCTGTGGAGCAGAGCAAGAGCTCGGTCGGGGCTGGAGGGTGCATCTCAGGCCCTGTGCCTTaGGCATGGGCAGCGGGTGTC +
Preference number: 4 (lower is better)
Translates to: IDLSVEQSKSSVGAGGCISGPVP*AWAAGV
Trigger: GACACCCGCTGCCCATGCCCAAGGCACAGGGCCTGA...GATGCACCCTCCAGCCCCGACCGAGCTCTTGCTCTGCTCCACAGAAAGGTCAAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR GCA 90 bp GCACACGAAGCCTTCCCTGTCTGCACGGAGAGACTTTGTTGGCTCTTTGGAGCTGGGCGCAGGCCCTGTTaGCCGGGCAACTGCATCCGA +
Preference number: 4 (lower is better)
Translates to: AHEAFPVCTERLCWLFGAGRRPC*PGNCIR
Trigger: TCGGATGCAGTTGCCCGGGCAACAGGGCCTGCGCCC...AGCTCCAAAGAGCCAACAAAGTCTCTCCGTGCAGACAGGGAAGGCTTCGTGTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR GCA 90 bp ACTAGGTGTTGGGCACATCAGCAGTATGCTAAGGGCAGAGAAAAGCGGGCTCCCACGGCTGGTACTCGCTaGGCGGCCGGCAGCTTGGCT +
Preference number: 4 (lower is better)
Translates to: TRCWAHQQYAKGREKRAPTAGTR*AAGSLA
Trigger: AGCCAAGCTGCCGGCCGCGCAGCGAGTACCAGCCGT...GGGAGCCCGCTTTTCTCTGCCCTTAGCATACTGCTGATGTGCCCAACACCTAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR GCA 90 bp GCACACGAAGCCTTCCCTGTCTGCACGGAGAGACTTTGTTGGCTCTTTGGAGCTCCTGTTGAGGGCATCTaGCACCGCGCGCCCCTTGCC +
Preference number: 4 (lower is better)
Translates to: AHEAFPVCTERLCWLFGAPVEGI*HRAPLA
Trigger: GGCAAGGGGCGCGCGGTGGCAGATGCCCTCAACAGG...AGCTCCAAAGAGCCAACAAAGTCTCTCCGTGCAGACAGGGAAGGCTTCGTGTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR GCA 90 bp CTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGCACCTGTTGAGGGCATCTaGCACCGCGCGCCCCTTGCC +
Preference number: 4 (lower is better)
Translates to: LPRRETLPLPAPSWHFRAPVEGI*HRAPLA
Trigger: GGCAAGGGGCGCGCGGTGGCAGATGCCCTCAACAGG...TGCCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp GGGGACCCTTGGCTAGATGCTGTGCCACCAGTAGTAAGAGTCGGTGGCCTCAGATCCTGGGTCTGGGATTaGGCTGGGGGCAGAGGCTTC +
Preference number: 4 (lower is better)
Translates to: GDPWLDAVPPVVRVGGLRSWVWD*AGGRGF
Trigger: GAAGCCTCTGCCCCCAGCCCAATCCCAGACCCAGGA...TCTGAGGCCACCGACTCTTACTACTGGTGGCACAGCATCTAGCCAAGGGTCCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR CCA 90 bp GACCTGGGGCCACAGAGCCTTGATCCTTGTGTGGCTCTTTGGTTACAGGACCTCTCAGGCCCTGTGCCTTaGGCATGGGCAGCGGGTGTC +
Preference number: 4 (lower is better)
Translates to: DLGPQSLDPCVALWLQDLSGPVP*AWAAGV
Trigger: GACACCCGCTGCCCATGCCCAAGGCACAGGGCCTGA...GAGGTCCTGTAACCAAAGAGCCACACAAGGATCAAGGCTCTGTGGCCCCAGGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
CDS-3UTR GCA 90 bp CTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCGGGCGCAGGCCCTGTTaGCCGGGCAACTGCATCCGA +
Preference number: 4 (lower is better)
Translates to: LCLPRRETLPLPAPSWHFGRRPC*PGNCIR
Trigger: TCGGATGCAGTTGCCCGGGCAACAGGGCCTGCGCCC...GAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000207883.2
CDS-3UTR GCA 90 bp ATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCAACGGCTGGTACTCGCTaGGCGGCCGGCAGCTTGGCT +
Preference number: 4 (lower is better)
Translates to: MTLPPQKGNTSTASSFMATAGTR*AAGSLA
Trigger: AGCCAAGCTGCCGGCCGCGCAGCGAGTACCAGCCGT...TGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000207883.2
CDS-3UTR GCA 90 bp GCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGGGACGCCTTTCCAGCTaGAGGACCACCCTCCTGGGT +
Preference number: 4 (lower is better)
Translates to: ASPEGKHFHCQLLHGISGGRLSS*RTTLLG
Trigger: ACCCAGGAGGGTGGTCCTGCAGCTGGAAAGGCGTCC...CCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR GCA 90 bp TGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGCTCCTTCAGGCCCTGTaGCTTGGGCATGGGCAGCGG +
Preference number: 4 (lower is better)
Translates to: CLPRRETLPLPAPSWHFRLLQAL*LGHGQR
Trigger: CCGCTGCCCATGCCCAAGGCACAGGGCCTGAAGGAG...CCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR GCA 90 bp TCCTGGCACCACAGGGCCTTGATCCTTCAAAGGCTCTTGGCCTTTTGGAAGACCCTCCTTCAGGCCCTGTaGCTTGGGCATGGGCAGCGG +
Preference number: 4 (lower is better)
Translates to: SWHHRALILQRLLAFWKTLLQAL*LGHGQR
Trigger: CCGCTGCCCATGCCCAAGGCACAGGGCCTGAAGGAG...GGTCTTCCAAAAGGCCAAGAGCCTTTGAAGGATCAAGGCCCTGTGGTGCCAGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
CDS-3UTR GCA 90 bp CTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCCCTGTTGAGGGCATCTaGCACCGCGCGCCCCTTGCC +
Preference number: 4 (lower is better)
Translates to: LCLPRRETLPLPAPSWHFPVEGI*HRAPLA
Trigger: GGCAAGGGGCGCGCGGTGGCAGATGCCCTCAACAGG...GAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR GCA 90 bp ATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCACCTGTTGAGGGCATCTaGCACCGCGCGCCCCTTGCC +
Preference number: 4 (lower is better)
Translates to: MTLPPQKGNTSTASSFMAPVEGI*HRAPLA
Trigger: GGCAAGGGGCGCGCGGTGGCAGATGCCCTCAACAGG...TGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp ACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTGCGCGGCCGGCAGCTTaGCTCGGGCCGCTGCACTTT +
Preference number: 4 (lower is better)
Translates to: TLPPQKGNTSTASSFMAFARPAA*LGPLHF
Trigger: AAAGTGCAGCGGCCCGAGCCAAGCTGCCGGCCGCGC...AAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000207883.2
CDS-3UTR CCA 90 bp ACCTGGGGCCACAGAGCCTTGATCCTTGTGTGGCTCTTTGGTTACAGGACCTCGTCCTGGGTCTGGGATTaGGCTGGGGGCAGAGGCTTC +
Preference number: 4 (lower is better)
Translates to: TWGHRALILVWLFGYRTSSWVWD*AGGRGF
Trigger: GAAGCCTCTGCCCCCAGCCCAATCCCAGACCCAGGA...CGAGGTCCTGTAACCAAAGAGCCACACAAGGATCAAGGCTCTGTGGCCCCAGGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
CDS-3UTR TCA 90 bp GCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGGGCACCAGGGGATCCTaGCCCTTCAAAGGTACTGGG +
Preference number: 4 (lower is better)
Translates to: ASPEGKHFHCQLLHGISGGTRGS*PFKGTG
Trigger: CCCAGTACCTTTGAAGGGTCAGGATCCCCTGGTGCC...CCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR GCA 90 bp GCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGTCTCCCTGGGCTGGCTaGGTCTCTATGGCGACAGCA +
Preference number: 4 (lower is better)
Translates to: ASPEGKHFHCQLLHGISGSPWAG*VSMATA
Trigger: TGCTGTCGCCATAGAGACGCAGCCAGCCCAGGGAGA...CCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000207883.2
CDS-3UTR GCA 90 bp TGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGTGTTGCCCGGGCAACTaGATCCGACTCTCCCTGGGC +
Preference number: 4 (lower is better)
Translates to: CLPRRETLPLPAPSWHFRCCPGN*IRLSLG
Trigger: GCCCAGGGAGAGTCGGATGCAGTTGCCCGGGCAACA...CCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000207883.2
CDS-3UTR GCA 90 bp TGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGGACGCCTTTCCAGCTaGAGGACCACCCTCCTGGGT +
Preference number: 4 (lower is better)
Translates to: CLPRRETLPLPAPSWHFRGRLSS*RTTLLG
Trigger: ACCCAGGAGGGTGGTCCTGCAGCTGGAAAGGCGTCC...CCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR GCA 90 bp CTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCCTCCTTCAGGCCCTGTaGCTTGGGCATGGGCAGCGG +
Preference number: 4 (lower is better)
Translates to: LCLPRRETLPLPAPSWHFLLQAL*LGHGQR
Trigger: CCGCTGCCCATGCCCAAGGCACAGGGCCTGAAGGAG...GAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR GCA 90 bp TCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGCAACTCCTTCAGGCCCTGTaGCTTGGGCATGGGCAGCGG +
Preference number: 4 (lower is better)
Translates to: SPEGKHFHCQLLHGISGQLLQAL*LGHGQR
Trigger: CCGCTGCCCATGCCCAAGGCACAGGGCCTGAAGGAG...TTGCCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp GCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGTCCGCCTTGTCCAGCTaGTTCCAGAAGCGGGCGATG +
Preference number: 4 (lower is better)
Translates to: ASPEGKHFHCQLLHGISGSALSS*FQKRAM
Trigger: CATCGCCCGCTTCTGGAACCAGCTGGACAAGGCGGA...CCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000207883.2
CDS-3UTR CCA 90 bp ACCTGGGGCCACAGAGCCTTGATCCTTGTGTGGCTCTTTGGTTACAGGACCTCGGGTCTGGGATTGGGCTaGGGGCAGAGGCTTCTCTTC +
Preference number: 4 (lower is better)
Translates to: TWGHRALILVWLFGYRTSGLGLG*GQRLLF
Trigger: GAAGAGAAGCCTCTGCCCCCAGCCCAATCCCAGACC...CGAGGTCCTGTAACCAAAGAGCCACACAAGGATCAAGGCTCTGTGGCCCCAGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
CDS-3UTR CCA 90 bp TCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGCAAGGGGATCACAGGGCCTaGGTCCTTCCGAGGTGCTGG +
Preference number: 4 (lower is better)
Translates to: SPEGKHFHCQLLHGISGQGDHRA*VLPRCW
Trigger: CCAGCACCTCGGAAGGACCCAGGCCCTGTGATCCCC...TTGCCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR TCA 90 bp GCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGGGGGCCACAGAGCCTTaGTCCTTGTGTGGCTCTTTG +
Preference number: 4 (lower is better)
Translates to: ASPEGKHFHCQLLHGISGGATEP*SLCGSL
Trigger: CAAAGAGCCACACAAGGATCAAGGCTCTGTGGCCCC...CCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGC
58% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR TCA 90 bp GCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGGGGCCTGCTAAGCCTTaGTTCTTCACAGACTCGGGG +
Preference number: 4 (lower is better)
Translates to: ASPEGKHFHCQLLHGISGGPAKP*FFTDSG
Trigger: CCCCGAGTCTGTGAAGAATCAAGGCTTAGCAGGCCC...CCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGC
58% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR GCA 90 bp TCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGCAAGGACGCCTTTCCAGCTaGAGGACCACCCTCCTGGGT +
Preference number: 4 (lower is better)
Translates to: SPEGKHFHCQLLHGISGQGRLSS*RTTLLG
Trigger: ACCCAGGAGGGTGGTCCTGCAGCTGGAAAGGCGTCC...TTGCCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp TCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGCAAGCGCGGAAGTCCTTCTaGTACTGGGTCTCGCGCTCG +
Preference number: 4 (lower is better)
Translates to: SPEGKHFHCQLLHGISGQARKSF*YWVSRS
Trigger: CGAGCGCGAGACCCAGTACCAGAAGGACTTCCGCGC...TTGCCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000207883.2
CDS-3UTR CCA 90 bp TCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGCAATCCTGGGTCTGGGATTaGGCTGGGGGCAGAGGCTTC +
Preference number: 4 (lower is better)
Translates to: SPEGKHFHCQLLHGISGQSWVWD*AGGRGF
Trigger: GAAGCCTCTGCCCCCAGCCCAATCCCAGACCCAGGA...TTGCCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp ACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTTCAGGCCCTGTGCCTTaGGCATGGGCAGCGGGTGTC +
Preference number: 4 (lower is better)
Translates to: TLPPQKGNTSTASSFMAFSGPVP*AWAAGV
Trigger: GACACCCGCTGCCCATGCCCAAGGCACAGGGCCTGA...AAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR TCA 90 bp GCACACGAAGCCTTCCCTGTCTGCACGGAGAGACTTTGTTGGCTCTTTGGAGCTCCTCCGAGTACTTGGTaGAAACCAGCGGCACCGCAA +
Preference number: 4 (lower is better)
Translates to: AHEAFPVCTERLCWLFGAPPSTW*KPAAPQ
Trigger: TTGCGGTGCCGCTGGTTTTCACCAAGTACTCGGAGG...AGCTCCAAAGAGCCAACAAAGTCTCTCCGTGCAGACAGGGAAGGCTTCGTGTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR TCA 90 bp TCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGCAACTGCGTGTGTCACGCTaGTCTGCACCGGACGCCTTT +
Preference number: 4 (lower is better)
Translates to: SPEGKHFHCQLLHGISGQLRVSR*SAPDAF
Trigger: AAAGGCGTCCGGTGCAGATCAGCGTGACACACGCAG...TTGCCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR TCA 90 bp TCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGCAATGTGGTCCTGAACCTTaGTGGGTGCTGGGGCCACTG +
Preference number: 4 (lower is better)
Translates to: SPEGKHFHCQLLHGISGQCGPEP*WVLGPL
Trigger: CAGTGGCCCCAGCACCCATCAAGGTTCAGGACCACA...TTGCCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR TCA 90 bp CTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGCAGGGCCTGCTAAGCCTTaGTTCTTCACAGACTCGGGG +
Preference number: 4 (lower is better)
Translates to: LPRRETLPLPAPSWHFRAGPAKP*FFTDSG
Trigger: CCCCGAGTCTGTGAAGAATCAAGGCTTAGCAGGCCC...TGCCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR TCA 90 bp CTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCGGCACCAGGGGATCCTaGCCCTTCAAAGGTACTGGG +
Preference number: 4 (lower is better)
Translates to: LCLPRRETLPLPAPSWHFGTRGS*PFKGTG
Trigger: CCCAGTACCTTTGAAGGGTCAGGATCCCCTGGTGCC...GAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR TCA 90 bp TGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGTGCCTTTGGGACCTTaGGTCTTCAGAGGGTCAGGG +
Preference number: 4 (lower is better)
Translates to: CLPRRETLPLPAPSWHFRVPLGP*VFRGSG
Trigger: CCCTGACCCTCTGAAGACTCAAGGTCCCAAAGGCAC...CCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR GCA 90 bp CTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCTCTCCCTGGGCTGGCTaGGTCTCTATGGCGACAGCA +
Preference number: 4 (lower is better)
Translates to: LCLPRRETLPLPAPSWHFSPWAG*VSMATA
Trigger: TGCTGTCGCCATAGAGACGCAGCCAGCCCAGGGAGA...GAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000207883.2
CDS-3UTR GCA 90 bp AAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCGGGCGCAGGCCCTGTTaGCCGGGCAACTGCATCCGA +
Preference number: 4 (lower is better)
Translates to: KYMTLPPQKGNTSTASSFGRRPC*PGNCIR
Trigger: TCGGATGCAGTTGCCCGGGCAACAGGGCCTGCGCCC...GAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000207883.2
CDS-3UTR GCA 90 bp GGTGCTACAAACACAGAATCATGTCCCTTCAGATACCTGGGGGCTGTTGTATCTCCTGTTGAGGGCATCTaGCACCGCGCGCCCCTTGCC +
Preference number: 4 (lower is better)
Translates to: GATNTESCPFRYLGAVVSPVEGI*HRAPLA
Trigger: GGCAAGGGGCGCGCGGTGGCAGATGCCCTCAACAGG...AGATACAACAGCCCCCAGGTATCTGAAGGGACATGATTCTGTGTTTGTAGCACC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
CDS-3UTR GCA 90 bp GCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGTGGCCCGACACCACCTaGTTGTCTTTGGCCTTCCTT +
Preference number: 4 (lower is better)
Translates to: ASPEGKHFHCQLLHGISGWPDTT*LSLAFL
Trigger: AAGGAAGGCCAAAGACAAGCAGGTGGTGTCGGGCCA...CCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp ATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCAGCATCCGACTCTCCCTaGGCTGGCTGCGTCTCTATG +
Preference number: 4 (lower is better)
Translates to: MTLPPQKGNTSTASSFMAASDSP*AGCVSM
Trigger: CATAGAGACGCAGCCAGCCCAGGGAGAGTCGGATGC...TGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000207883.2
CDS-3UTR CCA 90 bp GCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGTCTGGGGGCTTGTACTaGGGCTTGGCTTTGATGGGT +
Preference number: 4 (lower is better)
Translates to: ASPEGKHFHCQLLHGISGSGGLY*GLALMG
Trigger: ACCCATCAAAGCCAAGCCCCAGTACAAGCCCCCAGA...CCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp GCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGCTGTGGTCTTTTTCTTaGCAGCCTGGCCCGACACCA +
Preference number: 4 (lower is better)
Translates to: ASPEGKHFHCQLLHGISGLWSFS*QPGPTP
Trigger: TGGTGTCGGGCCAGGCTGCCAAGAAAAAGACCACAG...CCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp TGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGAGGGCTTTGGGCTTTaGCTGGTGCTAAGGGGACAG +
Preference number: 4 (lower is better)
Translates to: CLPRRETLPLPAPSWHFREGFGL*LVLRGQ
Trigger: CTGTCCCCTTAGCACCAGCCAAAGCCCAAAGCCCTC...CCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp ATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATACGCTCTGGGACCGTaGGAGCTCGATCCTTCTCGG +
Preference number: 4 (lower is better)
Translates to: MTLPPQKGNTSTASSFMAYALGP*ELDPSR
Trigger: CCGAGAAGGATCGAGCTCCCACGGTCCCAGAGCGTA...TGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
3UTR CAA 72 bp GGACTCGCTACACACACTGGCCACATGCTCAGCACATaGACCTTTCTGTGGAGCAGAGCAAGAGCTCGGTCG +
Preference number: 4 (lower is better)
Translates to: GLATHTGHMLST*TFLWSRARARS
Trigger: CGACCGAGCTCTTGCTCTGCTCCACAGAAAGGTCAATGTGCTGAGCATGTGGCCAGTGTGTGTAGCGAGTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR TCA 90 bp ATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCAGGGGCCACAGAGCCTTaGTCCTTGTGTGGCTCTTTG +
Preference number: 4 (lower is better)
Translates to: MTLPPQKGNTSTASSFMAGATEP*SLCGSL
Trigger: CAAAGAGCCACACAAGGATCAAGGCTCTGTGGCCCC...TGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR TCA 90 bp CTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCGGCACCACAGGGCCTTaGTCCTTCAAAGGCTCTTGG +
Preference number: 4 (lower is better)
Translates to: LCLPRRETLPLPAPSWHFGTTGP*SFKGSW
Trigger: CCAAGAGCCTTTGAAGGATCAAGGCCCTGTGGTGCC...GAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR TCA 90 bp CTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGCAGATGCTATGTGGTCCTaGACCTTGATGGGTGCTGGG +
Preference number: 4 (lower is better)
Translates to: LPRRETLPLPAPSWHFRADAMWS*TLMGAG
Trigger: CCCAGCACCCATCAAGGTTCAGGACCACATAGCATC...TGCCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR TCA 90 bp CTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGCAGGAACCACAGGACTCTaGTTCTTCAGAGGCTCTGGC +
Preference number: 4 (lower is better)
Translates to: LPRRETLPLPAPSWHFRAGTTGL*FFRGSG
Trigger: GCCAGAGCCTCTGAAGAATCAGAGTCCTGTGGTTCC...TGCCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR TCA 90 bp TCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGCAAGTGCCTTTGGGACCTTaGGTCTTCAGAGGGTCAGGG +
Preference number: 4 (lower is better)
Translates to: SPEGKHFHCQLLHGISGQVPLGP*VFRGSG
Trigger: CCCTGACCCTCTGAAGACTCAAGGTCCCAAAGGCAC...TTGCCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR GCA 90 bp ATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCGGGCGCAGGCCCTGTTaGCCGGGCAACTGCATCCGA +
Preference number: 4 (lower is better)
Translates to: IKYMTLPPQKGNTSTASSGRRPC*PGNCIR
Trigger: TCGGATGCAGTTGCCCGGGCAACAGGGCCTGCGCCC...GGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000207883.2
CDS-3UTR GCA 90 bp CAGATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCACGGCTGGTACTCGCTaGGCGGCCGGCAGCTTGGCT +
Preference number: 4 (lower is better)
Translates to: QIKYMTLPPQKGNTSTASTAGTR*AAGSLA
Trigger: AGCCAAGCTGCCGGCCGCGCAGCGAGTACCAGCCGT...GCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAATCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000207883.2
CDS-3UTR GCA 90 bp ATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCCCTGTTGAGGGCATCTaGCACCGCGCGCCCCTTGCC +
Preference number: 4 (lower is better)
Translates to: IKYMTLPPQKGNTSTASSPVEGI*HRAPLA
Trigger: GGCAAGGGGCGCGCGGTGGCAGATGCCCTCAACAGG...GGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR GCA 90 bp GGTGCACACGAAGCCTTCCCTGTCTGCACGGAGAGACTTTGTTGGCTCTTTGGATGGCCCGACACCACCTaGTTGTCTTTGGCCTTCCTT +
Preference number: 4 (lower is better)
Translates to: GAHEAFPVCTERLCWLFGWPDTT*LSLAFL
Trigger: AAGGAAGGCCAAAGACAAGCAGGTGGTGTCGGGCCA...TCCAAAGAGCCAACAAAGTCTCTCCGTGCAGACAGGGAAGGCTTCGTGTGCACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR GCA 90 bp GCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGCTGTGGGCAGTTGAGTaGCTTTGGGACCTTGAGTCT +
Preference number: 4 (lower is better)
Translates to: ASPEGKHFHCQLLHGISGLWAVE*LWDLES
Trigger: AGACTCAAGGTCCCAAAGGCACTCAACTGCCCACAG...CCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp CTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCCTACGTGTGTCGCGCTaGTCTACACCGGACGCCTTT +
Preference number: 4 (lower is better)
Translates to: LCLPRRETLPLPAPSWHFLRVSR*STPDAF
Trigger: AAAGGCGTCCGGTGTAGACCAGCGCGACACACGTAG...GAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp ATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCACTACGTGTGTCGCGCTaGTCTACACCGGACGCCTTT +
Preference number: 4 (lower is better)
Translates to: MTLPPQKGNTSTASSFMALRVSR*STPDAF
Trigger: AAAGGCGTCCGGTGTAGACCAGCGCGACACACGTAG...TGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp TGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGAGTCACCATCCATGCTaGCCCTGCCTTCCTACGTGT +
Preference number: 4 (lower is better)
Translates to: CLPRRETLPLPAPSWHFRSHHPC*PCLPTC
Trigger: ACACGTAGGAAGGCAGGGCCAGCATGGATGGTGACT...CCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp ACCTTCCCAAACTGCAGGGACCTGAAGAGACCAAGGAGCCATCAGATCTGCCCTAGTCACCATCCATGCTaGCCCTGCCTTCCTACGTGT +
Preference number: 4 (lower is better)
Translates to: TFPNCRDLKRPRSHQICPSHHPC*PCLPTC
Trigger: ACACGTAGGAAGGCAGGGCCAGCATGGATGGTGACT...AGGGCAGATCTGATGGCTCCTTGGTCTCTTCAGGTCCCTGCAGTTTGGGAAGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR CCA 90 bp CTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGCAAGTCACCATCCATGCTaGCCCTGCCTTCCTACGTGT +
Preference number: 4 (lower is better)
Translates to: LPRRETLPLPAPSWHFRASHHPC*PCLPTC
Trigger: ACACGTAGGAAGGCAGGGCCAGCATGGATGGTGACT...TGCCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp GAAATGTACGAAGTGAGGAACGGGCTTGGTCACCTGCAGAGAGGTGACACCAAAGGTCTGGGATTGGGCTaGGGGCAGAGGCTTCTCTTC +
Preference number: 4 (lower is better)
Translates to: EMYEVRNGLGHLQRGDTKGLGLG*GQRLLF
Trigger: GAAGAGAAGCCTCTGCCCCCAGCCCAATCCCAGACC...TTTGGTGTCACCTCTCTGCAGGTGACCAAGCCCGTTCCTCACTTCGTACATTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR CCA 90 bp TCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGCAAAGTCACCATCCATGCTaGCCCTGCCTTCCTGCGTGT +
Preference number: 4 (lower is better)
Translates to: SPEGKHFHCQLLHGISGQSHHPC*PCLPAC
Trigger: ACACGCAGGAAGGCAGGGCCAGCATGGATGGTGACT...TTGCCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp GGTGCTACAAACACAGAATCATGTCCCTTCAGATACCTGGGGGCTGTTGTATCTTCAGGCCCTGTGCCTTaGGCATGGGCAGCGGGTGTC +
Preference number: 4 (lower is better)
Translates to: GATNTESCPFRYLGAVVSSGPVP*AWAAGV
Trigger: GACACCCGCTGCCCATGCCCAAGGCACAGGGCCTGA...AGATACAACAGCCCCCAGGTATCTGAAGGGACATGATTCTGTGTTTGTAGCACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
CDS-3UTR CCA 90 bp TGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGTTTTTCTTGGCAGCCTaGCCCGACACCACCTGCTTG +
Preference number: 4 (lower is better)
Translates to: CLPRRETLPLPAPSWHFRFFLAA*PDTTCL
Trigger: CAAGCAGGTGGTGTCGGGCCAGGCTGCCAAGAAAAA...CCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp ACTAGGTGTTGGGCACATCAGCAGTATGCTAAGGGCAGAGAAAAGCGGGCTCCCCTGTGGTCTTTTTCTTaGCAGCCTGGCCCGACACCA +
Preference number: 4 (lower is better)
Translates to: TRCWAHQQYAKGREKRAPLWSFS*QPGPTP
Trigger: TGGTGTCGGGCCAGGCTGCCAAGAAAAAGACCACAG...GGGAGCCCGCTTTTCTCTGCCCTTAGCATACTGCTGATGTGCCCAACACCTAGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR CCA 90 bp GGTGCACACGAAGCCTTCCCTGTCTGCACGGAGAGACTTTGTTGGCTCTTTGGACACTGGGGCCCTCTGTaGTCTTTTTCTTGGCAGCCT +
Preference number: 4 (lower is better)
Translates to: GAHEAFPVCTERLCWLFGHWGPL*SFSWQP
Trigger: AGGCTGCCAAGAAAAAGACCACAGAGGGCCCCAGTG...TCCAAAGAGCCAACAAAGTCTCTCCGTGCAGACAGGGAAGGCTTCGTGTGCACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR CCA 90 bp TGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGGCAACAGAGGGCTTTaGGCTTTGGCTGGTGCTAAG +
Preference number: 4 (lower is better)
Translates to: CLPRRETLPLPAPSWHFRGNRGL*ALAGAK
Trigger: CTTAGCACCAGCCAAAGCCCAAAGCCCTCTGTTGCC...CCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp CTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCACCTTGGTCCTTTGTTaGGGCTGGCACCAGGGGATC +
Preference number: 4 (lower is better)
Translates to: LCLPRRETLPLPAPSWHFTLVLC*GWHQGI
Trigger: GATCCCCTGGTGCCAGCCCCAACAAAGGACCAAGGT...GAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
3UTR CAA 72 bp CTCTTGGCCTTTTGGAAGACCTGGGGCCACAGAGCCTaGATCCTTGTGTGGCTCTTTGGTTACAGGACCTCG +
Preference number: 4 (lower is better)
Translates to: LLAFWKTWGHRA*ILVWLFGYRTS
Trigger: CGAGGTCCTGTAACCAAAGAGCCACACAAGGATCAAGGCTCTGTGGCCCCAGGTCTTCCAAAAGGCCAAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
CDS-3UTR TCA 90 bp ATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCAGATGCTATGTGGTCCTaGACCTTGATGGGTGCTGGG +
Preference number: 4 (lower is better)
Translates to: MTLPPQKGNTSTASSFMADAMWS*TLMGAG
Trigger: CCCAGCACCCATCAAGGTTCAGGACCACATAGCATC...TGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR TCA 90 bp ACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTGGGCCTGCTAAGCCTTaGTTCTTCACAGACTCGGGG +
Preference number: 4 (lower is better)
Translates to: TLPPQKGNTSTASSFMAFGPAKP*FFTDSG
Trigger: CCCCGAGTCTGTGAAGAATCAAGGCTTAGCAGGCCC...AAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR TCA 90 bp TGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGAGAACCACAGGGCTTTaGTTCTTTGGAGGCTCTGGG +
Preference number: 4 (lower is better)
Translates to: CLPRRETLPLPAPSWHFRRTTGL*FFGGSG
Trigger: CCCAGAGCCTCCAAAGAATCAAAGCCCTGTGGTTCT...CCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR TCA 90 bp CTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGCAAGAACCACAGGGCTTTaGTTCTTTGGAGGCTCTGGG +
Preference number: 4 (lower is better)
Translates to: LPRRETLPLPAPSWHFRARTTGL*FFGGSG
Trigger: CCCAGAGCCTCCAAAGAATCAAAGCCCTGTGGTTCT...TGCCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR TCA 90 bp TATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGGCACCAGGGGATCCTaGCCCTTCAAAGGTACTGGG +
Preference number: 4 (lower is better)
Translates to: YMTLPPQKGNTSTASSFMGTRGS*PFKGTG
Trigger: CCCAGTACCTTTGAAGGGTCAGGATCCCCTGGTGCC...CATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR TCA 90 bp CTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGCAGAACTGTTGGGATCATaGCTGGGGGTGAAGGTGAGA +
Preference number: 4 (lower is better)
Translates to: LPRRETLPLPAPSWHFRAELLGS*LGVKVR
Trigger: TCTCACCTTCACCCCCAGTCATGATCCCAACAGTTC...TGCCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR GCA 90 bp ATGCAGATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCACGGCTGGTACTCGCTaGGCGGCCGGCAGCTTGGCT +
Preference number: 4 (lower is better)
Translates to: MQIKYMTLPPQKGNTSTATAGTR*AAGSLA
Trigger: AGCCAAGCTGCCGGCCGCGCAGCGAGTACCAGCCGT...GGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAATCTGCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000207883.2
CDS-3UTR GCA 90 bp GGCATTTCAGGGCAATCAAGGGGATCCCTCAATATATTCCGTATGGGGAACTGTGGACGCCTTTCCAGCTaGAGGACCACCCTCCTGGGT +
Preference number: 4 (lower is better)
Translates to: GISGQSRGSLNIFRMGNCGRLSS*RTTLLG
Trigger: ACCCAGGAGGGTGGTCCTGCAGCTGGAAAGGCGTCC...ACAGTTCCCCATACGGAATATATTGAGGGATCCCCTTGATTGCCCTGAAATGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
CDS-3UTR CCA 90 bp GAAATGTACGAAGTGAGGAACGGGCTTGGTCACCTGCAGAGAGGTGACACCAAAAAGTCCTTCTGGTACTaGGTCTCGCGCTCGAAGGGC +
Preference number: 4 (lower is better)
Translates to: EMYEVRNGLGHLQRGDTKKSFWY*VSRSKG
Trigger: GCCCTTCGAGCGCGAGACCCAGTACCAGAAGGACTT...TTTGGTGTCACCTCTCTGCAGGTGACCAAGCCCGTTCCTCACTTCGTACATTTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR CCA 90 bp CTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGTCACCATCCATGCTaGCCCTGCCTTCCTACGTGT +
Preference number: 4 (lower is better)
Translates to: LCLPRRETLPLPAPSWHFSHHPC*PCLPTC
Trigger: ACACGTAGGAAGGCAGGGCCAGCATGGATGGTGACT...GAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp AAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCTCCTGGGTCTGGGATTaGGCTGGGGGCAGAGGCTTC +
Preference number: 4 (lower is better)
Translates to: KYMTLPPQKGNTSTASSFSWVWD*AGGRGF
Trigger: GAAGCCTCTGCCCCCAGCCCAATCCCAGACCCAGGA...GAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp TTCCAGCTCTCTCGCTCCAGGGTGAACAGAGAACAGAGGGAAATGTACGAAGTGAGTCACCATCCATGCTaGCCCTGCCTTCCTGCGTGT +
Preference number: 4 (lower is better)
Translates to: FQLSRSRVNREQREMYEVSHHPC*PCLPAC
Trigger: ACACGCAGGAAGGCAGGGCCAGCATGGATGGTGACT...CACTTCGTACATTTCCCTCTGTTCTCTGTTCACCCTGGAGCGAGAGAGCTGGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR CCA 90 bp ATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATCTGGGGGCTTGTACTaGGGCTTGGCTTTGATGGGT +
Preference number: 4 (lower is better)
Translates to: MTLPPQKGNTSTASSFMASGGLY*GLALMG
Trigger: ACCCATCAAAGCCAAGCCCCAGTACAAGCCCCCAGA...TGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp GACCTGGGGCCACAGAGCCTTGATCCTTGTGTGGCTCTTTGGTTACAGGACCTCACTGGGCGCTGTAGCTaGTCTCATGAACCATCTTGT +
Preference number: 4 (lower is better)
Translates to: DLGPQSLDPCVALWLQDLTGRCS*SHEPSC
Trigger: ACAAGATGGTTCATGAGACCAGCTACAGCGCCCAGT...GAGGTCCTGTAACCAAAGAGCCACACAAGGATCAAGGCTCTGTGGCCCCAGGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
CDS-3UTR CCA 90 bp TCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGCAATTTTTCTTGGCAGCCTaGCCCGACACCACCTGCTTG +
Preference number: 4 (lower is better)
Translates to: SPEGKHFHCQLLHGISGQFFLAA*PDTTCL
Trigger: CAAGCAGGTGGTGTCGGGCCAGGCTGCCAAGAAAAA...TTGCCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp GGGGAGCACTACATGATCCATAGACAATCTGTGGTATGCAACAACACCCGGGCCTTTTTCTTGGCAGCCTaGCCCGACACCACCTGCTTG +
Preference number: 4 (lower is better)
Translates to: GEHYMIHRQSVVCNNTRAFFLAA*PDTTCL
Trigger: CAAGCAGGTGGTGTCGGGCCAGGCTGCCAAGAAAAA...GGCCCGGGTGTTGTTGCATACCACAGATTGTCTATGGATCATGTAGTGCTCCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR CCA 90 bp CTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCCTGTGGTCTTTTTCTTaGCAGCCTGGCCCGACACCA +
Preference number: 4 (lower is better)
Translates to: LCLPRRETLPLPAPSWHFLWSFS*QPGPTP
Trigger: TGGTGTCGGGCCAGGCTGCCAAGAAAAAGACCACAG...GAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp TCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGCAACACTGGGGCCCTCTGTaGTCTTTTTCTTGGCAGCCT +
Preference number: 4 (lower is better)
Translates to: SPEGKHFHCQLLHGISGQHWGPL*SFSWQP
Trigger: AGGCTGCCAAGAAAAAGACCACAGAGGGCCCCAGTG...TTGCCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp CTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGCTCTTGGCCTTTTaGAAGACCTGGGGCCACAGA +
Preference number: 4 (lower is better)
Translates to: LCLPRRETLPLPAPSWHFRLLAF*KTWGHR
Trigger: TCTGTGGCCCCAGGTCTTCCAAAAGGCCAAGAGCCT...GAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp CTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGCAATCTTTTGGCAGTCCTaGCACCACAGGGCCTTGATC +
Preference number: 4 (lower is better)
Translates to: LPRRETLPLPAPSWHFRAIFWQS*HHRALI
Trigger: GATCAAGGCCCTGTGGTGCCAGGACTGCCAAAAGAT...TGCCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp CTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCGGGATAATGGGGTCTTaGCTCTTCACTGGCTCAGGG +
Preference number: 4 (lower is better)
Translates to: LCLPRRETLPLPAPSWHFGIMGS*LFTGSG
Trigger: CCCTGAGCCAGTGAAGAGCCAAGACCCCATTATCCC...GAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp TGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGTGAAGGTGAGACTGTaGGCAGTTGAGTGCCTTTGG +
Preference number: 4 (lower is better)
Translates to: CLPRRETLPLPAPSWHFRVKVRL*AVECLW
Trigger: CCAAAGGCACTCAACTGCCCACAGTCTCACCTTCAC...CCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
3UTR CAA 72 bp AGCAGTATGCTAAGGGCAGAGAAAAGCGGGCTCCCATaGCTCAGAGCTCCTCCTACACCATCTACAGCATCC +
Preference number: 4 (lower is better)
Translates to: SSMLRAEKSGLP*LRAPPTPSTAS
Trigger: GGATGCTGTAGATGGTGTAGGAGGAGCTCTGAGCAATGGGAGCCCGCTTTTCTCTGCCCTTAGCATACTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR TCA 90 bp CTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGCATCTTCAAAGAGGCCATaGTGGAGACATGCTGGTCCT +
Preference number: 4 (lower is better)
Translates to: LPRRETLPLPAPSWHFRASSKRP*WRHAGP
Trigger: AGGACCAGCATGTCTCCATCATGGCCTCTTTGAAGA...TGCCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR GCA 90 bp AGTACGTCAAGAGCTGTTTCTAAGCTTCGAAAGTCAAAGATGCTGGCTAAGCGCGGACGCCTTTCCAGCTaGAGGACCACCCTCCTGGGT +
Preference number: 4 (lower is better)
Translates to: STSRAVSKLRKSKMLAKRGRLSS*RTTLLG
Trigger: ACCCAGGAGGGTGGTCCTGCAGCTGGAAAGGCGTCC...GCGCTTAGCCAGCATCTTTGACTTTCGAAGCTTAGAAACAGCTCTTGACGTACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR GCA 90 bp GGCATTTCAGGGCAATCAAGGGGATCCCTCAATATATTCCGTATGGGGAACTGTCGGGTCCAGCCTTCCTaGGTGTGTCACGCTGATCTG +
Preference number: 4 (lower is better)
Translates to: GISGQSRGSLNIFRMGNCRVQPS*VCHADL
Trigger: CAGATCAGCGTGACACACGCAGGAAGGCTGGACCCG...ACAGTTCCCCATACGGAATATATTGAGGGATCCCCTTGATTGCCCTGAAATGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
CDS-3UTR GCA 90 bp TATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGACCTCCTCCCGGATTTaGCTGTTGAGGGCATCTGCC +
Preference number: 4 (lower is better)
Translates to: YMTLPPQKGNTSTASSFMTSSRI*LLRASA
Trigger: GGCAGATGCCCTCAACAGGCAAATCCGGGAGGAGGT...CATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR GCA 90 bp GACCTGGGGCCACAGAGCCTTGATCCTTGTGTGGCTCTTTGGTTACAGGACCTCCATTCCTGTAAGAGCTaGTTACTGTACTCGCCACCT +
Preference number: 4 (lower is better)
Translates to: DLGPQSLDPCVALWLQDLHSCKS*LLYSPP
Trigger: AGGTGGCGAGTACAGTAAGCAGCTCTTACAGGAATG...GAGGTCCTGTAACCAAAGAGCCACACAAGGATCAAGGCTCTGTGGCCCCAGGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
CDS-3UTR GCA 90 bp GCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGCATTCCTGTAAGAGCTaGTTACTGTACTCGCCACCT +
Preference number: 4 (lower is better)
Translates to: ASPEGKHFHCQLLHGISGHSCKS*LLYSPP
Trigger: AGGTGGCGAGTACAGTAAGCAGCTCTTACAGGAATG...CCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR GCA 90 bp TCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGCAACTGTGGGCAGTTGAGTaGCTTTGGGACCTTGAGTCT +
Preference number: 4 (lower is better)
Translates to: SPEGKHFHCQLLHGISGQLWAVE*LWDLES
Trigger: AGACTCAAGGTCCCAAAGGCACTCAACTGCCCACAG...TTGCCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp ATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCGCGCGGAAGTCCTTCTaGTACTGGGTCTCGCGCTCG +
Preference number: 4 (lower is better)
Translates to: IKYMTLPPQKGNTSTASSARKSF*YWVSRS
Trigger: CGAGCGCGAGACCCAGTACCAGAAGGACTTCCGCGC...GGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000207883.2
CDS-3UTR CCA 90 bp AGTACGTCAAGAGCTGTTTCTAAGCTTCGAAAGTCAAAGATGCTGGCTAAGCGCGCGCGGAAGTCCTTCTaGTACTGGGTCTCGCGCTCG +
Preference number: 4 (lower is better)
Translates to: STSRAVSKLRKSKMLAKRARKSF*YWVSRS
Trigger: CGAGCGCGAGACCCAGTACCAGAAGGACTTCCGCGC...GCGCTTAGCCAGCATCTTTGACTTTCGAAGCTTAGAAACAGCTCTTGACGTACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR CCA 90 bp ACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTAGTCACCATCCATGCTaGCCCTGCCTTCCTACGTGT +
Preference number: 4 (lower is better)
Translates to: TLPPQKGNTSTASSFMAFSHHPC*PCLPTC
Trigger: ACACGTAGGAAGGCAGGGCCAGCATGGATGGTGACT...AAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp AAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCGGTCTGGGATTGGGCTaGGGGCAGAGGCTTCTCTTC +
Preference number: 4 (lower is better)
Translates to: KYMTLPPQKGNTSTASSFGLGLG*GQRLLF
Trigger: GAAGAGAAGCCTCTGCCCCCAGCCCAATCCCAGACC...GAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp CAGATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTGGGTCTGGGATTaGGCTGGGGGCAGAGGCTTC +
Preference number: 4 (lower is better)
Translates to: QIKYMTLPPQKGNTSTASSWVWD*AGGRGF
Trigger: GAAGCCTCTGCCCCCAGCCCAATCCCAGACCCAGGA...GCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAATCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp TGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGAACCATCTTGTCATCTaGGGGCTTGTACTGGGGCTT +
Preference number: 4 (lower is better)
Translates to: CLPRRETLPLPAPSWHFRNHLVI*GLVLGL
Trigger: AAGCCCCAGTACAAGCCCCCAGATGACAAGATGGTT...CCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp TCCTGGCACCACAGGGCCTTGATCCTTCAAAGGCTCTTGGCCTTTTGGAAGACCAACCATCTTGTCATCTaGGGGCTTGTACTGGGGCTT +
Preference number: 4 (lower is better)
Translates to: SWHHRALILQRLLAFWKTNHLVI*GLVLGL
Trigger: AAGCCCCAGTACAAGCCCCCAGATGACAAGATGGTT...GGTCTTCCAAAAGGCCAAGAGCCTTTGAAGGATCAAGGCCCTGTGGTGCCAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
CDS-3UTR CCA 90 bp ACTAGGTGTTGGGCACATCAGCAGTATGCTAAGGGCAGAGAAAAGCGGGCTCCCAACCATCTTGTCATCTaGGGGCTTGTACTGGGGCTT +
Preference number: 4 (lower is better)
Translates to: TRCWAHQQYAKGREKRAPNHLVI*GLVLGL
Trigger: AAGCCCCAGTACAAGCCCCCAGATGACAAGATGGTT...GGGAGCCCGCTTTTCTCTGCCCTTAGCATACTGCTGATGTGCCCAACACCTAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR CCA 90 bp TGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGACTGGGCGCTGTAGCTaGTCTCATGAACCATCTTGT +
Preference number: 4 (lower is better)
Translates to: CLPRRETLPLPAPSWHFRTGRCS*SHEPSC
Trigger: ACAAGATGGTTCATGAGACCAGCTACAGCGCCCAGT...CCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp GCACACGAAGCCTTCCCTGTCTGCACGGAGAGACTTTGTTGGCTCTTTGGAGCTACTGGGCGCTGTAGCTaGTCTCATGAACCATCTTGT +
Preference number: 4 (lower is better)
Translates to: AHEAFPVCTERLCWLFGATGRCS*SHEPSC
Trigger: ACAAGATGGTTCATGAGACCAGCTACAGCGCCCAGT...AGCTCCAAAGAGCCAACAAAGTCTCTCCGTGCAGACAGGGAAGGCTTCGTGTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR CCA 90 bp TGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGCCTTGATCCTTGTGTaGCTCTTTGGTTACAGGACC +
Preference number: 4 (lower is better)
Translates to: CLPRRETLPLPAPSWHFRALILV*LFGYRT
Trigger: GGTCCTGTAACCAAAGAGCCACACAAGGATCAAGGC...CCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp CTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGCATCCTTCAAAGGCTCTTaGCCTTTTGGAAGACCTGGG +
Preference number: 4 (lower is better)
Translates to: LPRRETLPLPAPSWHFRASFKGS*PFGRPG
Trigger: CCCAGGTCTTCCAAAAGGCCAAGAGCCTTTGAAGGA...TGCCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp TCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGCAAATCTTTTGGCAGTCCTaGCACCACAGGGCCTTGATC +
Preference number: 4 (lower is better)
Translates to: SPEGKHFHCQLLHGISGQIFWQS*HHRALI
Trigger: GATCAAGGCCCTGTGGTGCCAGGACTGCCAAAAGAT...TTGCCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp ACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTGGCAACAGAGGGCTTTaGGCTTTGGCTGGTGCTAAG +
Preference number: 4 (lower is better)
Translates to: TLPPQKGNTSTASSFMAFGNRGL*ALAGAK
Trigger: CTTAGCACCAGCCAAAGCCCAAAGCCCTCTGTTGCC...AAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp CTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGCAGTCCCTTCAGATACCTaGGGGCTGTTGTATCTGTAC +
Preference number: 4 (lower is better)
Translates to: LPRRETLPLPAPSWHFRAVPSDT*GLLYLY
Trigger: GTACAGATACAACAGCCCCCAGGTATCTGAAGGGAC...TGCCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp TATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGACCTTGGTCCTTTGTTaGGGCTGGCACCAGGGGATC +
Preference number: 4 (lower is better)
Translates to: YMTLPPQKGNTSTASSFMTLVLC*GWHQGI
Trigger: GATCCCCTGGTGCCAGCCCCAACAAAGGACCAAGGT...CATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp TGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGCAGTTGAGTGCCTTTaGGACCTTGAGTCTTCAGAG +
Preference number: 4 (lower is better)
Translates to: CLPRRETLPLPAPSWHFRAVECL*DLESSE
Trigger: CTCTGAAGACTCAAGGTCCCAAAGGCACTCAACTGC...CCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp TCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGCAAGTGAAGGTGAGACTGTaGGCAGTTGAGTGCCTTTGG +
Preference number: 4 (lower is better)
Translates to: SPEGKHFHCQLLHGISGQVKVRL*AVECLW
Trigger: CCAAAGGCACTCAACTGCCCACAGTCTCACCTTCAC...TTGCCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR TCA 90 bp GGCATTTCAGGGCAATCAAGGGGATCCCTCAATATATTCCGTATGGGGAACTGTCCTCCGAGTACTTGGTaGAAACCAGCGGCACCGCAA +
Preference number: 4 (lower is better)
Translates to: GISGQSRGSLNIFRMGNCPPSTW*KPAAPQ
Trigger: TTGCGGTGCCGCTGGTTTTCACCAAGTACTCGGAGG...ACAGTTCCCCATACGGAATATATTGAGGGATCCCCTTGATTGCCCTGAAATGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122101.8
CDS-3UTR TCA 90 bp AAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCCCTCCGAGTACTTGGTaGAAACCAGCGGCACCGCAA +
Preference number: 4 (lower is better)
Translates to: KYMTLPPQKGNTSTASSFPPSTW*KPAAPQ
Trigger: TTGCGGTGCCGCTGGTTTTCACCAAGTACTCGGAGG...GAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000207883.2
CDS-3UTR TCA 90 bp GCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGTGTCAGTCCATGCTCTaGATTCATTCCTGTAAGAGC +
Preference number: 4 (lower is better)
Translates to: ASPEGKHFHCQLLHGISGCQSML*IHSCKS
Trigger: GCTCTTACAGGAATGAATTCAGAGCATGGACTGACA...CCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR TCA 90 bp TATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGGAACCACAGGACTCTaGTTCTTCAGAGGCTCTGGC +
Preference number: 4 (lower is better)
Translates to: YMTLPPQKGNTSTASSFMGTTGL*FFRGSG
Trigger: GCCAGAGCCTCTGAAGAATCAGAGTCCTGTGGTTCC...CATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR TCA 90 bp ATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCAGGTGTTGGGAAGCTTTaGTCCTTAGTGCTTGCTGGA +
Preference number: 4 (lower is better)
Translates to: MTLPPQKGNTSTASSFMAGVGKL*SLVLAG
Trigger: TCCAGCAAGCACTAAGGATCAAAGCTTCCCAACACC...TGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR TCA 90 bp ATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATCTTCAAAGAGGCCATaGTGGAGACATGCTGGTCCT +
Preference number: 4 (lower is better)
Translates to: MTLPPQKGNTSTASSFMASSKRP*WRHAGP
Trigger: AGGACCAGCATGTCTCCATCATGGCCTCTTTGAAGA...TGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR TCA 90 bp CTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCTCTTCAAAGAGGCCATaGTGGAGACATGCTGGTCCT +
Preference number: 4 (lower is better)
Translates to: LCLPRRETLPLPAPSWHFSSKRP*WRHAGP
Trigger: AGGACCAGCATGTCTCCATCATGGCCTCTTTGAAGA...GAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR TCA 90 bp AAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCGTGCCTTTGGGACCTTaGGTCTTCAGAGGGTCAGGG +
Preference number: 4 (lower is better)
Translates to: KYMTLPPQKGNTSTASSFVPLGP*VFRGSG
Trigger: CCCTGACCCTCTGAAGACTCAAGGTCCCAAAGGCAC...GAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR GCA 90 bp CAGATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCTCCCTGGGCTGGCTaGGTCTCTATGGCGACAGCA +
Preference number: 4 (lower is better)
Translates to: QIKYMTLPPQKGNTSTASSPWAG*VSMATA
Trigger: TGCTGTCGCCATAGAGACGCAGCCAGCCCAGGGAGA...GCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAATCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000207883.2
CDS-3UTR GCA 90 bp AAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCACCTCCTCCCGGATTTaGCTGTTGAGGGCATCTGCC +
Preference number: 4 (lower is better)
Translates to: KYMTLPPQKGNTSTASSFTSSRI*LLRASA
Trigger: GGCAGATGCCCTCAACAGGCAAATCCGGGAGGAGGT...GAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR GCA 90 bp GGTGCACACGAAGCCTTCCCTGTCTGCACGGAGAGACTTTGTTGGCTCTTTGGACATTCCTGTAAGAGCTaGTTACTGTACTCGCCACCT +
Preference number: 4 (lower is better)
Translates to: GAHEAFPVCTERLCWLFGHSCKS*LLYSPP
Trigger: AGGTGGCGAGTACAGTAAGCAGCTCTTACAGGAATG...TCCAAAGAGCCAACAAAGTCTCTCCGTGCAGACAGGGAAGGCTTCGTGTGCACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR GCA 90 bp ATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCAGGCTCCGTATTCTTCTaGGATCCATGGCCTTGTTGT +
Preference number: 4 (lower is better)
Translates to: MTLPPQKGNTSTASSFMAGSVFF*DPWPCC
Trigger: ACAACAAGGCCATGGATCGCAGAAGAATACGGAGCC...TGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR GCA 90 bp TATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGTGGCCCGACACCACCTaGTTGTCTTTGGCCTTCCTT +
Preference number: 4 (lower is better)
Translates to: YMTLPPQKGNTSTASSFMWPDTT*LSLAFL
Trigger: AAGGAAGGCCAAAGACAAGCAGGTGGTGTCGGGCCA...CATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR GCA 90 bp TGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGTTGATCCTTAGTGCTTaGTGGAACCACAGGACTCTG +
Preference number: 4 (lower is better)
Translates to: CLPRRETLPLPAPSWHFRLILSA*WNHRTL
Trigger: CAGAGTCCTGTGGTTCCAGCAAGCACTAAGGATCAA...CCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp ATGGCATTTCAGGGCAATCAAGGGGATCCCTCAATATATTCCGTATGGGGAACTTCCGCCTTGTCCAGCTaGTTCCAGAAGCGGGCGATG +
Preference number: 4 (lower is better)
Translates to: MAFQGNQGDPSIYSVWGTSALSS*FQKRAM
Trigger: CATCGCCCGCTTCTGGAACCAGCTGGACAAGGCGGA...AGTTCCCCATACGGAATATATTGAGGGATCCCCTTGATTGCCCTGAAATGCCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122101.8
CDS-3UTR CCA 90 bp ATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTCCGCCTTGTCCAGCTaGTTCCAGAAGCGGGCGATG +
Preference number: 4 (lower is better)
Translates to: IKYMTLPPQKGNTSTASSSALSS*FQKRAM
Trigger: CATCGCCCGCTTCTGGAACCAGCTGGACAAGGCGGA...GGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000207883.2
CDS-3UTR CCA 90 bp CTAAAAACAAAGGCTTGCCCAGTGCTGATGCATTCATTTTCAAACATGTCTCAAGCGCGGCCGGCAGCTTaGCTCGGGCCGCTGCACTTT +
Preference number: 4 (lower is better)
Translates to: LKTKACPVLMHSFSNMSQARPAA*LGPLHF
Trigger: AAAGTGCAGCGGCCCGAGCCAAGCTGCCGGCCGCGC...TTGAGACATGTTTGAAAATGAATGCATCAGCACTGGGCAAGCCTTTGTTTTTAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR CCA 90 bp GGCATTTCAGGGCAATCAAGGGGATCCCTCAATATATTCCGTATGGGGAACTGTAAGTCCTTCTGGTACTaGGTCTCGCGCTCGAAGGGC +
Preference number: 4 (lower is better)
Translates to: GISGQSRGSLNIFRMGNCKSFWY*VSRSKG
Trigger: GCCCTTCGAGCGCGAGACCCAGTACCAGAAGGACTT...ACAGTTCCCCATACGGAATATATTGAGGGATCCCCTTGATTGCCCTGAAATGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122101.8
CDS-3UTR CCA 90 bp ATGCAGATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCGCGCGGAAGTCCTTCTaGTACTGGGTCTCGCGCTCG +
Preference number: 4 (lower is better)
Translates to: MQIKYMTLPPQKGNTSTAARKSF*YWVSRS
Trigger: CGAGCGCGAGACCCAGTACCAGAAGGACTTCCGCGC...GGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAATCTGCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000207883.2
CDS-3UTR CCA 90 bp GGTGCTACAAACACAGAATCATGTCCCTTCAGATACCTGGGGGCTGTTGTATCTCTACGTGTGTCGCGCTaGTCTACACCGGACGCCTTT +
Preference number: 4 (lower is better)
Translates to: GATNTESCPFRYLGAVVSLRVSR*STPDAF
Trigger: AAAGGCGTCCGGTGTAGACCAGCGCGACACACGTAG...AGATACAACAGCCCCCAGGTATCTGAAGGGACATGATTCTGTGTTTGTAGCACC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
CDS-3UTR CCA 90 bp GGCATTTCAGGGCAATCAAGGGGATCCCTCAATATATTCCGTATGGGGAACTGTAGTCACCATCCATGCTaGCCCTGCCTTCCTGCGTGT +
Preference number: 4 (lower is better)
Translates to: GISGQSRGSLNIFRMGNCSHHPC*PCLPAC
Trigger: ACACGCAGGAAGGCAGGGCCAGCATGGATGGTGACT...ACAGTTCCCCATACGGAATATATTGAGGGATCCCCTTGATTGCCCTGAAATGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
CDS-3UTR CCA 90 bp TATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGTCTGGGGGCTTGTACTaGGGCTTGGCTTTGATGGGT +
Preference number: 4 (lower is better)
Translates to: YMTLPPQKGNTSTASSFMSGGLY*GLALMG
Trigger: ACCCATCAAAGCCAAGCCCCAGTACAAGCCCCCAGA...CATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp ATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCAACTGGGCGCTGTAGCTaGTCTCATGAACCATCTTGT +
Preference number: 4 (lower is better)
Translates to: MTLPPQKGNTSTASSFMATGRCS*SHEPSC
Trigger: ACAAGATGGTTCATGAGACCAGCTACAGCGCCCAGT...TGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp CTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCACTGGGCGCTGTAGCTaGTCTCATGAACCATCTTGT +
Preference number: 4 (lower is better)
Translates to: LCLPRRETLPLPAPSWHFTGRCS*SHEPSC
Trigger: ACAAGATGGTTCATGAGACCAGCTACAGCGCCCAGT...GAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp ATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCAGCCTTGATCCTTGTGTaGCTCTTTGGTTACAGGACC +
Preference number: 4 (lower is better)
Translates to: MTLPPQKGNTSTASSFMAALILV*LFGYRT
Trigger: GGTCCTGTAACCAAAGAGCCACACAAGGATCAAGGC...TGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp AAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCGAGGGCTTTGGGCTTTaGCTGGTGCTAAGGGGACAG +
Preference number: 4 (lower is better)
Translates to: KYMTLPPQKGNTSTASSFEGFGL*LVLRGQ
Trigger: CTGTCCCCTTAGCACCAGCCAAAGCCCAAAGCCCTC...GAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp TCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGCAAGCAGTTGAGTGCCTTTaGGACCTTGAGTCTTCAGAG +
Preference number: 4 (lower is better)
Translates to: SPEGKHFHCQLLHGISGQAVECL*DLESSE
Trigger: CTCTGAAGACTCAAGGTCCCAAAGGCACTCAACTGC...TTGCCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR TCA 90 bp CAGATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCCCTCCGAGTACTTGGTaGAAACCAGCGGCACCGCAA +
Preference number: 4 (lower is better)
Translates to: QIKYMTLPPQKGNTSTASPPSTW*KPAAPQ
Trigger: TTGCGGTGCCGCTGGTTTTCACCAAGTACTCGGAGG...GCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAATCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000207883.2
CDS-3UTR TCA 90 bp ATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCGGCACCACAGGGCCTTaGTCCTTCAAAGGCTCTTGG +
Preference number: 4 (lower is better)
Translates to: IKYMTLPPQKGNTSTASSGTTGP*SFKGSW
Trigger: CCAAGAGCCTTTGAAGGATCAAGGCCCTGTGGTGCC...GGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR TCA 90 bp ACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTGGTGTTGGGAAGCTTTaGTCCTTAGTGCTTGCTGGA +
Preference number: 4 (lower is better)
Translates to: TLPPQKGNTSTASSFMAFGVGKL*SLVLAG
Trigger: TCCAGCAAGCACTAAGGATCAAAGCTTCCCAACACC...AAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR TCA 90 bp TATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGAACTGTTGGGATCATaGCTGGGGGTGAAGGTGAGA +
Preference number: 4 (lower is better)
Translates to: YMTLPPQKGNTSTASSFMELLGS*LGVKVR
Trigger: TCTCACCTTCACCCCCAGTCATGATCCCAACAGTTC...CATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR GCA 90 bp ACCCTTGGAACCAAGGCAGATGGGAAGTCTCTAATTAGTTTTGTGGCCTTTTTGCGGGTCCAGCCTTCCTaGGTGTGTCACGCTGATCTG +
Preference number: 4 (lower is better)
Translates to: TLGTKADGKSLISFVAFLRVQPS*VCHADL
Trigger: CAGATCAGCGTGACACACGCAGGAAGGCTGGACCCG...CAAAAAGGCCACAAAACTAATTAGAGACTTCCCATCTGCCTTGGTTCCAAGGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR GCA 90 bp TACTGGGATTATAGGGTCTTGATTCTTTATAGGCCCAAGAACCACAGGGCTTTGCGGGTCCAGCCTTCCTaGGTGTGTCACGCTGATCTG +
Preference number: 4 (lower is better)
Translates to: YWDYRVLILYRPKNHRALRVQPS*VCHADL
Trigger: CAGATCAGCGTGACACACGCAGGAAGGCTGGACCCG...CAAAGCCCTGTGGTTCTTGGGCCTATAAAGAATCAAGACCCTATAATCCCAGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
CDS-3UTR GCA 90 bp ATGCAGATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCCGGGTCCAGCCTTCCTaGGTGTGTCACGCTGATCTG +
Preference number: 4 (lower is better)
Translates to: MQIKYMTLPPQKGNTSTARVQPS*VCHADL
Trigger: CAGATCAGCGTGACACACGCAGGAAGGCTGGACCCG...GGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAATCTGCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR GCA 90 bp AACAGAGGGCTTTGGGCTTTGGCTGGTGCTAAGGGGACAGAATCTTTATTCTTTACCTCCTCCCGGATTTaGCTGTTGAGGGCATCTGCC +
Preference number: 4 (lower is better)
Translates to: NRGLWALAGAKGTESLFFTSSRI*LLRASA
Trigger: GGCAGATGCCCTCAACAGGCAAATCCGGGAGGAGGT...AAAGAATAAAGATTCTGTCCCCTTAGCACCAGCCAAAGCCCAAAGCCCTCTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
CDS-3UTR GCA 90 bp ATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCACCTCCTCCCGGATTTaGCTGTTGAGGGCATCTGCC +
Preference number: 4 (lower is better)
Translates to: IKYMTLPPQKGNTSTASSTSSRI*LLRASA
Trigger: GGCAGATGCCCTCAACAGGCAAATCCGGGAGGAGGT...GGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR GCA 90 bp ATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCACATTCCTGTAAGAGCTaGTTACTGTACTCGCCACCT +
Preference number: 4 (lower is better)
Translates to: MTLPPQKGNTSTASSFMAHSCKS*LLYSPP
Trigger: AGGTGGCGAGTACAGTAAGCAGCTCTTACAGGAATG...TGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR GCA 90 bp TCCACTGCCAGCTCCTTCATGGCATTTCAGGGCAATCAAGGGGATCCCTCAATAGGCTCCGTATTCTTCTaGGATCCATGGCCTTGTTGT +
Preference number: 4 (lower is better)
Translates to: STASSFMAFQGNQGDPSIGSVFF*DPWPCC
Trigger: ACAACAAGGCCATGGATCGCAGAAGAATACGGAGCC...TATTGAGGGATCCCCTTGATTGCCCTGAAATGCCATGAAGGAGCTGGCAGTGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
CDS-3UTR GCA 90 bp ACTAGGTGTTGGGCACATCAGCAGTATGCTAAGGGCAGAGAAAAGCGGGCTCCCTTCATCTCTTTGCTTTaGTCCTTGTCGTCGGGTTTG +
Preference number: 4 (lower is better)
Translates to: TRCWAHQQYAKGREKRAPFISLL*SLSSGL
Trigger: CAAACCCGACGACAAGGAGCAAAGCAAAGAGATGAA...GGGAGCCCGCTTTTCTCTGCCCTTAGCATACTGCTGATGTGCCCAACACCTAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR CCA 90 bp CAGATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCAAGTCCTTCTGGTACTaGGTCTCGCGCTCGAAGGGC +
Preference number: 4 (lower is better)
Translates to: QIKYMTLPPQKGNTSTASKSFWY*VSRSKG
Trigger: GCCCTTCGAGCGCGAGACCCAGTACCAGAAGGACTT...GCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAATCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000207883.2
CDS-3UTR CCA 90 bp ATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCCTACGTGTGTCGCGCTaGTCTACACCGGACGCCTTT +
Preference number: 4 (lower is better)
Translates to: IKYMTLPPQKGNTSTASSLRVSR*STPDAF
Trigger: AAAGGCGTCCGGTGTAGACCAGCGCGACACACGTAG...GGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp CAAAGGTACTGGGATTATAGGGTCTTGATTCTTTATAGGCCCAAGAACCACAGGGGTCTGGGATTGGGCTaGGGGCAGAGGCTTCTCTTC +
Preference number: 4 (lower is better)
Translates to: QRYWDYRVLILYRPKNHRGLGLG*GQRLLF
Trigger: GAAGAGAAGCCTCTGCCCCCAGCCCAATCCCAGACC...CCTGTGGTTCTTGGGCCTATAAAGAATCAAGACCCTATAATCCCAGTACCTTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
CDS-3UTR CCA 90 bp ATGCAGATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCGGTCTGGGATTGGGCTaGGGGCAGAGGCTTCTCTTC +
Preference number: 4 (lower is better)
Translates to: MQIKYMTLPPQKGNTSTAGLGLG*GQRLLF
Trigger: GAAGAGAAGCCTCTGCCCCCAGCCCAATCCCAGACC...GGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAATCTGCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp ATGGCATTTCAGGGCAATCAAGGGGATCCCTCAATATATTCCGTATGGGGAACTAGTCACCATCCATGCTaGCCCTGCCTTCCTGCGTGT +
Preference number: 4 (lower is better)
Translates to: MAFQGNQGDPSIYSVWGTSHHPC*PCLPAC
Trigger: ACACGCAGGAAGGCAGGGCCAGCATGGATGGTGACT...AGTTCCCCATACGGAATATATTGAGGGATCCCCTTGATTGCCCTGAAATGCCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
CDS-3UTR CCA 90 bp CAGATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCAGTCACCATCCATGCTaGCCCTGCCTTCCTGCGTGT +
Preference number: 4 (lower is better)
Translates to: QIKYMTLPPQKGNTSTASSHHPC*PCLPAC
Trigger: ACACGCAGGAAGGCAGGGCCAGCATGGATGGTGACT...GCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAATCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp ATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCACCTTGGTCCTTTGTTaGGGCTGGCACCAGGGGATC +
Preference number: 4 (lower is better)
Translates to: IKYMTLPPQKGNTSTASSTLVLC*GWHQGI
Trigger: GATCCCCTGGTGCCAGCCCCAACAAAGGACCAAGGT...GGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp ATGCAGATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCGGGGCTGTAGGACCTTaGTCCTTTGTTGGGGCTGGC +
Preference number: 4 (lower is better)
Translates to: MQIKYMTLPPQKGNTSTAGAVGP*SFVGAG
Trigger: GCCAGCCCCAACAAAGGACCAAGGTCCTACAGCCCC...GGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAATCTGCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
3UTR CAA 72 bp AACTTGATCTTTTGGCAGTCCTGGCACCACAGGGCCTaGATCCTTCAAAGGCTCTTGGCCTTTTGGAAGACC +
Preference number: 4 (lower is better)
Translates to: NLIFWQSWHHRA*ILQRLLAFWKT
Trigger: GGTCTTCCAAAAGGCCAAGAGCCTTTGAAGGATCAAGGCCCTGTGGTGCCAGGACTGCCAAAAGATCAAGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
CDS-3UTR TCA 90 bp CAGATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCGATGCTATGTGGTCCTaGACCTTGATGGGTGCTGGG +
Preference number: 4 (lower is better)
Translates to: QIKYMTLPPQKGNTSTASDAMWS*TLMGAG
Trigger: CCCAGCACCCATCAAGGTTCAGGACCACATAGCATC...GCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAATCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR GCA 90 bp AAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTCCCCAGCTCCTTCAGGCCCTGTaGCTTGGGCATGGGCAGCGG +
Preference number: 4 (lower is better)
Translates to: KTIQHSFMQIKYMTLPPQLLQAL*LGHGQR
Trigger: CCGCTGCCCATGCCCAAGGCACAGGGCCTGAAGGAG...CTGGGGAGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR GCA 90 bp AGCAAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTCCCCTCCTTCAGGCCCTGTaGCTTGGGCATGGGCAGCGG +
Preference number: 4 (lower is better)
Translates to: SKTIQHSFMQIKYMTLPPLLQAL*LGHGQR
Trigger: CCGCTGCCCATGCCCAAGGCACAGGGCCTGAAGGAG...GGGAGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTTGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR GCA 90 bp ATGCAGATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCACCTCCTCCCGGATTTaGCTGTTGAGGGCATCTGCC +
Preference number: 4 (lower is better)
Translates to: MQIKYMTLPPQKGNTSTATSSRI*LLRASA
Trigger: GGCAGATGCCCTCAACAGGCAAATCCGGGAGGAGGT...GGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAATCTGCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR GCA 90 bp GCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGCTTGATGTCAGTCCATaGTCTGAATTCATTCCTGTA +
Preference number: 4 (lower is better)
Translates to: ASPEGKHFHCQLLHGISGLDVSP*SEFIPV
Trigger: TACAGGAATGAATTCAGAGCATGGACTGACATCAAG...CCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR GCA 90 bp ACCTGGGGCCACAGAGCCTTGATCCTTGTGTGGCTCTTTGGTTACAGGACCTCGCTTGATGTCAGTCCATaGTCTGAATTCATTCCTGTA +
Preference number: 4 (lower is better)
Translates to: TWGHRALILVWLFGYRTSLDVSP*SEFIPV
Trigger: TACAGGAATGAATTCAGAGCATGGACTGACATCAAG...CGAGGTCCTGTAACCAAAGAGCCACACAAGGATCAAGGCTCTGTGGCCCCAGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
CDS-3UTR GCA 90 bp ATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTCATCTCTTTGCTTTaGTCCTTGTCGTCGGGTTTG +
Preference number: 4 (lower is better)
Translates to: MTLPPQKGNTSTASSFMAFISLL*SLSSGL
Trigger: CAAACCCGACGACAAGGAGCAAAGCAAAGAGATGAA...TGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp CAGTTTTGTCCAGTACACTTGAGAGACAGAATAAGACCTGGAGAGCTTTGTTTGTCCGCCTTGTCCAGCTaGTTCCAGAAGCGGGCGATG +
Preference number: 4 (lower is better)
Translates to: QFCPVHLRDRIRPGELCLSALSS*FQKRAM
Trigger: CATCGCCCGCTTCTGGAACCAGCTGGACAAGGCGGA...CAAACAAAGCTCTCCAGGTCTTATTCTGTCTCTCAAGTGTACTGGACAAAACTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR CCA 90 bp TATCGCACCAGGACATTTCTGGTGGATAGTTTGTGTTTCCTCATAAGTCAGGAGCTACGTGTGTCGCGCTaGTCTACACCGGACGCCTTT +
Preference number: 4 (lower is better)
Translates to: YRTRTFLVDSLCFLISQELRVSR*STPDAF
Trigger: AAAGGCGTCCGGTGTAGACCAGCGCGACACACGTAG...CTCCTGACTTATGAGGAAACACAAACTATCCACCAGAAATGTCCTGGTGCGATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR CCA 90 bp AACAGAGGGCTTTGGGCTTTGGCTGGTGCTAAGGGGACAGAATCTTTATTCTTTAGTCACCATCCATGCTaGCCCTGCCTTCCTACGTGT +
Preference number: 4 (lower is better)
Translates to: NRGLWALAGAKGTESLFFSHHPC*PCLPTC
Trigger: ACACGTAGGAAGGCAGGGCCAGCATGGATGGTGACT...AAAGAATAAAGATTCTGTCCCCTTAGCACCAGCCAAAGCCCAAAGCCCTCTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
CDS-3UTR CCA 90 bp ATGCAGATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGTCACCATCCATGCTaGCCCTGCCTTCCTGCGTGT +
Preference number: 4 (lower is better)
Translates to: MQIKYMTLPPQKGNTSTASHHPC*PCLPAC
Trigger: ACACGCAGGAAGGCAGGGCCAGCATGGATGGTGACT...GGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAATCTGCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp AGCAAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTCCCTCAGGCCCTGTGCCTTaGGCATGGGCAGCGGGTGTC +
Preference number: 4 (lower is better)
Translates to: SKTIQHSFMQIKYMTLPPSGPVP*AWAAGV
Trigger: GACACCCGCTGCCCATGCCCAAGGCACAGGGCCTGA...GGGAGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTTGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp TATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGCCACCTGCTTGTCTTTaGCCTTCCTTGGGGGTTTAT +
Preference number: 4 (lower is better)
Translates to: YMTLPPQKGNTSTASSFMPPACL*PSLGVY
Trigger: ATAAACCCCCAAGGAAGGCCAAAGACAAGCAGGTGG...CATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp CAGATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCCACTGGGGCCCTCTGTaGTCTTTTTCTTGGCAGCCT +
Preference number: 4 (lower is better)
Translates to: QIKYMTLPPQKGNTSTASHWGPL*SFSWQP
Trigger: AGGCTGCCAAGAAAAAGACCACAGAGGGCCCCAGTG...GCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAATCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp CAGATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCAGGCTCTTGGCCTTTTaGAAGACCTGGGGCCACAGA +
Preference number: 4 (lower is better)
Translates to: QIKYMTLPPQKGNTSTASRLLAF*KTWGHR
Trigger: TCTGTGGCCCCAGGTCTTCCAAAAGGCCAAGAGCCT...GCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAATCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp CAGATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCGGCAACAGAGGGCTTTaGGCTTTGGCTGGTGCTAAG +
Preference number: 4 (lower is better)
Translates to: QIKYMTLPPQKGNTSTASGNRGL*ALAGAK
Trigger: CTTAGCACCAGCCAAAGCCCAAAGCCCTCTGTTGCC...GCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAATCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp CTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCATCCTTAGTGCTTGCTaGAACCACAGGACTCTGATT +
Preference number: 4 (lower is better)
Translates to: LCLPRRETLPLPAPSWHFILSAC*NHRTLI
Trigger: AATCAGAGTCCTGTGGTTCCAGCAAGCACTAAGGAT...GAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp AGCAAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTCCCGGGGATCACAGGGCCTaGGTCCTTCCGAGGTGCTGG +
Preference number: 4 (lower is better)
Translates to: SKTIQHSFMQIKYMTLPPGDHRA*VLPRCW
Trigger: CCAGCACCTCGGAAGGACCCAGGCCCTGTGATCCCC...GGGAGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTTGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
3UTR CAA 72 bp GTCTTGGCTCTTCACTGGCTCAGGGATCACTGGACCTaGGTTCTTCACAGGTGCTACAAACACAGAATCATG +
Preference number: 4 (lower is better)
Translates to: VLALHWLRDHWT*VLHRCYKHRIM
Trigger: CATGATTCTGTGTTTGTAGCACCTGTGAAGAACCAAGGTCCAGTGATCCCTGAGCCAGTGAAGAGCCAAGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
3UTR CAA 72 bp CTTGGTCACCTGCAGAGAGGTGACACCAAACATTGCTaGAGGAACCACGGTCAGTTTTGTCCAGTACACTTG +
Preference number: 4 (lower is better)
Translates to: LGHLQRGDTKHC*RNHGQFCPVHL
Trigger: CAAGTGTACTGGACAAAACTGACCGTGGTTCCTCAAGCAATGTTTGGTGTCACCTCTCTGCAGGTGACCAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR TCA 90 bp ACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTTGTCAGTCCATGCTCTaGATTCATTCCTGTAAGAGC +
Preference number: 4 (lower is better)
Translates to: TLPPQKGNTSTASSFMAFCQSML*IHSCKS
Trigger: GCTCTTACAGGAATGAATTCAGAGCATGGACTGACA...AAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR TCA 90 bp CAGATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCAGAACCACAGGGCTTTaGTTCTTTGGAGGCTCTGGG +
Preference number: 4 (lower is better)
Translates to: QIKYMTLPPQKGNTSTASRTTGL*FFGGSG
Trigger: CCCAGAGCCTCCAAAGAATCAAAGCCCTGTGGTTCT...GCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAATCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR TCA 90 bp CAGATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCGAACTGTTGGGATCATaGCTGGGGGTGAAGGTGAGA +
Preference number: 4 (lower is better)
Translates to: QIKYMTLPPQKGNTSTASELLGS*LGVKVR
Trigger: TCTCACCTTCACCCCCAGTCATGATCCCAACAGTTC...GCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAATCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR GCA 90 bp AGCAAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTCCCGGACGCCTTTCCAGCTaGAGGACCACCCTCCTGGGT +
Preference number: 4 (lower is better)
Translates to: SKTIQHSFMQIKYMTLPPGRLSS*RTTLLG
Trigger: ACCCAGGAGGGTGGTCCTGCAGCTGGAAAGGCGTCC...GGGAGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTTGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR GCA 90 bp TATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGCATTCCTGTAAGAGCTaGTTACTGTACTCGCCACCT +
Preference number: 4 (lower is better)
Translates to: YMTLPPQKGNTSTASSFMHSCKS*LLYSPP
Trigger: AGGTGGCGAGTACAGTAAGCAGCTCTTACAGGAATG...CATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp AGCAAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTCCCTCCTGGGTCTGGGATTaGGCTGGGGGCAGAGGCTTC +
Preference number: 4 (lower is better)
Translates to: SKTIQHSFMQIKYMTLPPSWVWD*AGGRGF
Trigger: GAAGCCTCTGCCCCCAGCCCAATCCCAGACCCAGGA...GGGAGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTTGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp TCCAGCAAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTTCAGGCCCTGTGCCTTaGGCATGGGCAGCGGGTGTC +
Preference number: 4 (lower is better)
Translates to: SSKTIQHSFMQIKYMTLPSGPVP*AWAAGV
Trigger: GACACCCGCTGCCCATGCCCAAGGCACAGGGCCTGA...AGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTTGCTGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp ACCCTTGGAACCAAGGCAGATGGGAAGTCTCTAATTAGTTTTGTGGCCTTTTTGTCTGGGGGCTTGTACTaGGGCTTGGCTTTGATGGGT +
Preference number: 4 (lower is better)
Translates to: TLGTKADGKSLISFVAFLSGGLY*GLALMG
Trigger: ACCCATCAAAGCCAAGCCCCAGTACAAGCCCCCAGA...CAAAAAGGCCACAAAACTAATTAGAGACTTCCCATCTGCCTTGGTTCCAAGGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR CCA 90 bp AAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCAACCATCTTGTCATCTaGGGGCTTGTACTGGGGCTT +
Preference number: 4 (lower is better)
Translates to: KYMTLPPQKGNTSTASSFNHLVI*GLVLGL
Trigger: AAGCCCCAGTACAAGCCCCCAGATGACAAGATGGTT...GAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp ATGCAGATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCTTTTTCTTGGCAGCCTaGCCCGACACCACCTGCTTG +
Preference number: 4 (lower is better)
Translates to: MQIKYMTLPPQKGNTSTAFFLAA*PDTTCL
Trigger: CAAGCAGGTGGTGTCGGGCCAGGCTGCCAAGAAAAA...GGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAATCTGCAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp ATGCAGATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCCACTGGGGCCCTCTGTaGTCTTTTTCTTGGCAGCCT +
Preference number: 4 (lower is better)
Translates to: MQIKYMTLPPQKGNTSTAHWGPL*SFSWQP
Trigger: AGGCTGCCAAGAAAAAGACCACAGAGGGCCCCAGTG...GGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAATCTGCAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp ATGCAGATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGGCTCTTGGCCTTTTaGAAGACCTGGGGCCACAGA +
Preference number: 4 (lower is better)
Translates to: MQIKYMTLPPQKGNTSTARLLAF*KTWGHR
Trigger: TCTGTGGCCCCAGGTCTTCCAAAAGGCCAAGAGCCT...GGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAATCTGCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp AAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCCCGAGGTGCTGGTGTTaGGAAGCTTTGATCCTTAGT +
Preference number: 4 (lower is better)
Translates to: KYMTLPPQKGNTSTASSFPRCWC*EALILS
Trigger: ACTAAGGATCAAAGCTTCCCAACACCAGCACCTCGG...GAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp CAGATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCGTGAAGGTGAGACTGTaGGCAGTTGAGTGCCTTTGG +
Preference number: 4 (lower is better)
Translates to: QIKYMTLPPQKGNTSTASVKVRL*AVECLW
Trigger: CCAAAGGCACTCAACTGCCCACAGTCTCACCTTCAC...GCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAATCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
3UTR CAA 72 bp TTCTTCAGAGGCTCTGGCAACAGAGGGCTTTGGGCTTaGGCTGGTGCTAAGGGGACAGAATCTTTATTCTTT +
Preference number: 4 (lower is better)
Translates to: FFRGSGNRGLWA*AGAKGTESLFF
Trigger: AAAGAATAAAGATTCTGTCCCCTTAGCACCAGCCAAAGCCCAAAGCCCTCTGTTGCCAGAGCCTCTGAAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
CDS-3UTR TCA 90 bp AAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTCCCCAGTGTGGTCCTGAACCTTaGTGGGTGCTGGGGCCACTG +
Preference number: 4 (lower is better)
Translates to: KTIQHSFMQIKYMTLPPQCGPEP*WVLGPL
Trigger: CAGTGGCCCCAGCACCCATCAAGGTTCAGGACCACA...CTGGGGAGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR GCA 90 bp TCTGCTAAAAACAAAGGCTTGCCCAGTGCTGATGCATTCATTTTCAAACATGTCACCTCCTCCCGGATTTaGCTGTTGAGGGCATCTGCC +
Preference number: 4 (lower is better)
Translates to: SAKNKGLPSADAFIFKHVTSSRI*LLRASA
Trigger: GGCAGATGCCCTCAACAGGCAAATCCGGGAGGAGGT...GACATGTTTGAAAATGAATGCATCAGCACTGGGCAAGCCTTTGTTTTTAGCAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR GCA 90 bp ATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCACTTGATGTCAGTCCATaGTCTGAATTCATTCCTGTA +
Preference number: 4 (lower is better)
Translates to: MTLPPQKGNTSTASSFMALDVSP*SEFIPV
Trigger: TACAGGAATGAATTCAGAGCATGGACTGACATCAAG...TGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR GCA 90 bp AACAGAGGGCTTTGGGCTTTGGCTGGTGCTAAGGGGACAGAATCTTTATTCTTTGGCTCCGTATTCTTCTaGGATCCATGGCCTTGTTGT +
Preference number: 4 (lower is better)
Translates to: NRGLWALAGAKGTESLFFGSVFF*DPWPCC
Trigger: ACAACAAGGCCATGGATCGCAGAAGAATACGGAGCC...AAAGAATAAAGATTCTGTCCCCTTAGCACCAGCCAAAGCCCAAAGCCCTCTGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
CDS-3UTR GCA 90 bp AAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCTTGATCCTTAGTGCTTaGTGGAACCACAGGACTCTG +
Preference number: 4 (lower is better)
Translates to: KYMTLPPQKGNTSTASSFLILSA*WNHRTL
Trigger: CAGAGTCCTGTGGTTCCAGCAAGCACTAAGGATCAA...GAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp TGGCTGGTGCTAAGGGGACAGAATCTTTATTCTTTAAAAGCTCAGATGCTATGTCTACGTGTGTCGCGCTaGTCTACACCGGACGCCTTT +
Preference number: 4 (lower is better)
Translates to: WLVLRGQNLYSLKAQMLCLRVSR*STPDAF
Trigger: AAAGGCGTCCGGTGTAGACCAGCGCGACACACGTAG...ACATAGCATCTGAGCTTTTAAAGAATAAAGATTCTGTCCCCTTAGCACCAGCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
CDS-3UTR CCA 90 bp AGCAAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTCCCGGTCTGGGATTGGGCTaGGGGCAGAGGCTTCTCTTC +
Preference number: 4 (lower is better)
Translates to: SKTIQHSFMQIKYMTLPPGLGLG*GQRLLF
Trigger: GAAGAGAAGCCTCTGCCCCCAGCCCAATCCCAGACC...GGGAGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTTGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp ATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCAGGAACTTGATCTTTTaGCAGTCCTGGCACCACAGG +
Preference number: 4 (lower is better)
Translates to: IKYMTLPPQKGNTSTASSRNLIF*QSWHHR
Trigger: CCTGTGGTGCCAGGACTGCCAAAAGATCAAGTTCCT...GGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp CAGATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCCCGAGGTGCTGGTGTTaGGAAGCTTTGATCCTTAGT +
Preference number: 4 (lower is better)
Translates to: QIKYMTLPPQKGNTSTASPRCWC*EALILS
Trigger: ACTAAGGATCAAAGCTTCCCAACACCAGCACCTCGG...GCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAATCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp AAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTCCCCAGTACGCTCTGGGACCGTaGGAGCTCGATCCTTCTCGG +
Preference number: 4 (lower is better)
Translates to: KTIQHSFMQIKYMTLPPQYALGP*ELDPSR
Trigger: CCGAGAAGGATCGAGCTCCCACGGTCCCAGAGCGTA...CTGGGGAGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp ATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCGTCCCTTCAGATACCTaGGGGCTGTTGTATCTGTAC +
Preference number: 4 (lower is better)
Translates to: IKYMTLPPQKGNTSTASSVPSDT*GLLYLY
Trigger: GTACAGATACAACAGCCCCCAGGTATCTGAAGGGAC...GGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp AAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTCCCCAGGGGGCTGTAGGACCTTaGTCCTTTGTTGGGGCTGGC +
Preference number: 4 (lower is better)
Translates to: KTIQHSFMQIKYMTLPPQGAVGP*SFVGAG
Trigger: GCCAGCCCCAACAAAGGACCAAGGTCCTACAGCCCC...CTGGGGAGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp AGCAAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTCCCGGGGCTGTAGGACCTTaGTCCTTTGTTGGGGCTGGC +
Preference number: 4 (lower is better)
Translates to: SKTIQHSFMQIKYMTLPPGAVGP*SFVGAG
Trigger: GCCAGCCCCAACAAAGGACCAAGGTCCTACAGCCCC...GGGAGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTTGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR TCA 90 bp GGTGCTACAAACACAGAATCATGTCCCTTCAGATACCTGGGGGCTGTTGTATCTTGTCAGTCCATGCTCTaGATTCATTCCTGTAAGAGC +
Preference number: 4 (lower is better)
Translates to: GATNTESCPFRYLGAVVSCQSML*IHSCKS
Trigger: GCTCTTACAGGAATGAATTCAGAGCATGGACTGACA...AGATACAACAGCCCCCAGGTATCTGAAGGGACATGATTCTGTGTTTGTAGCACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
CDS-3UTR TCA 90 bp AGCAAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTCCCGGGGCCACAGAGCCTTaGTCCTTGTGTGGCTCTTTG +
Preference number: 4 (lower is better)
Translates to: SKTIQHSFMQIKYMTLPPGATEP*SLCGSL
Trigger: CAAAGAGCCACACAAGGATCAAGGCTCTGTGGCCCC...GGGAGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR TCA 90 bp AAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTCCCCAGGGCACCACAGGGCCTTaGTCCTTCAAAGGCTCTTGG +
Preference number: 4 (lower is better)
Translates to: KTIQHSFMQIKYMTLPPQGTTGP*SFKGSW
Trigger: CCAAGAGCCTTTGAAGGATCAAGGCCCTGTGGTGCC...CTGGGGAGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR TCA 90 bp TCCAGCAAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTTGTGGTCCTGAACCTTaGTGGGTGCTGGGGCCACTG +
Preference number: 4 (lower is better)
Translates to: SSKTIQHSFMQIKYMTLPCGPEP*WVLGPL
Trigger: CAGTGGCCCCAGCACCCATCAAGGTTCAGGACCACA...AGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTTGCTGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR GCA 90 bp TCCAGCAAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTCGGGTCCAGCCTTCCTaGGTGTGTCACGCTGATCTG +
Preference number: 4 (lower is better)
Translates to: SSKTIQHSFMQIKYMTLPRVQPS*VCHADL
Trigger: CAGATCAGCGTGACACACGCAGGAAGGCTGGACCCG...AGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTTGCTGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR GCA 90 bp ATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCCATTCCTGTAAGAGCTaGTTACTGTACTCGCCACCT +
Preference number: 4 (lower is better)
Translates to: IKYMTLPPQKGNTSTASSHSCKS*LLYSPP
Trigger: AGGTGGCGAGTACAGTAAGCAGCTCTTACAGGAATG...GGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR GCA 90 bp TATCGCACCAGGACATTTCTGGTGGATAGTTTGTGTTTCCTCATAAGTCAGGAGGGCTCCGTATTCTTCTaGGATCCATGGCCTTGTTGT +
Preference number: 4 (lower is better)
Translates to: YRTRTFLVDSLCFLISQEGSVFF*DPWPCC
Trigger: ACAACAAGGCCATGGATCGCAGAAGAATACGGAGCC...CTCCTGACTTATGAGGAAACACAAACTATCCACCAGAAATGTCCTGGTGCGATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR CCA 90 bp AAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTCCCCAGAAGTCCTTCTGGTACTaGGTCTCGCGCTCGAAGGGC +
Preference number: 4 (lower is better)
Translates to: KTIQHSFMQIKYMTLPPQKSFWY*VSRSKG
Trigger: GCCCTTCGAGCGCGAGACCCAGTACCAGAAGGACTT...CTGGGGAGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000207883.2
CDS-3UTR CCA 90 bp AAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTCCCCAGCTACGTGTGTCGCGCTaGTCTACACCGGACGCCTTT +
Preference number: 4 (lower is better)
Translates to: KTIQHSFMQIKYMTLPPQLRVSR*STPDAF
Trigger: AAAGGCGTCCGGTGTAGACCAGCGCGACACACGTAG...CTGGGGAGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp TGGCTGGTGCTAAGGGGACAGAATCTTTATTCTTTAAAAGCTCAGATGCTATGTTCTGGGGGCTTGTACTaGGGCTTGGCTTTGATGGGT +
Preference number: 4 (lower is better)
Translates to: WLVLRGQNLYSLKAQMLCSGGLY*GLALMG
Trigger: ACCCATCAAAGCCAAGCCCCAGTACAAGCCCCCAGA...ACATAGCATCTGAGCTTTTAAAGAATAAAGATTCTGTCCCCTTAGCACCAGCCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
CDS-3UTR CCA 90 bp ATGCAGATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCTCCTTCAAAGGCTCTTaGCCTTTTGGAAGACCTGGG +
Preference number: 4 (lower is better)
Translates to: MQIKYMTLPPQKGNTSTASFKGS*PFGRPG
Trigger: CCCAGGTCTTCCAAAAGGCCAAGAGCCTTTGAAGGA...GGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAATCTGCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp AAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTCCCCAGGAGGGCTTTGGGCTTTaGCTGGTGCTAAGGGGACAG +
Preference number: 4 (lower is better)
Translates to: KTIQHSFMQIKYMTLPPQEGFGL*LVLRGQ
Trigger: CTGTCCCCTTAGCACCAGCCAAAGCCCAAAGCCCTC...CTGGGGAGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR TCA 90 bp AACAGAGGGCTTTGGGCTTTGGCTGGTGCTAAGGGGACAGAATCTTTATTCTTTTGTCAGTCCATGCTCTaGATTCATTCCTGTAAGAGC +
Preference number: 4 (lower is better)
Translates to: NRGLWALAGAKGTESLFFCQSML*IHSCKS
Trigger: GCTCTTACAGGAATGAATTCAGAGCATGGACTGACA...AAAGAATAAAGATTCTGTCCCCTTAGCACCAGCCAAAGCCCAAAGCCCTCTGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
CDS-3UTR TCA 90 bp AGCAAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTCCCGGAACCACAGGACTCTaGTTCTTCAGAGGCTCTGGC +
Preference number: 4 (lower is better)
Translates to: SKTIQHSFMQIKYMTLPPGTTGL*FFRGSG
Trigger: GCCAGAGCCTCTGAAGAATCAGAGTCCTGTGGTTCC...GGGAGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTTGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR GCA 90 bp TACTGGGATTATAGGGTCTTGATTCTTTATAGGCCCAAGAACCACAGGGCTTTGCATTCCTGTAAGAGCTaGTTACTGTACTCGCCACCT +
Preference number: 4 (lower is better)
Translates to: YWDYRVLILYRPKNHRALHSCKS*LLYSPP
Trigger: AGGTGGCGAGTACAGTAAGCAGCTCTTACAGGAATG...CAAAGCCCTGTGGTTCTTGGGCCTATAAAGAATCAAGACCCTATAATCCCAGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
CDS-3UTR GCA 90 bp ATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATCTCTTTGCTTTaGTCCTTGTCGTCGGGTTTG +
Preference number: 4 (lower is better)
Translates to: IKYMTLPPQKGNTSTASSFISLL*SLSSGL
Trigger: CAAACCCGACGACAAGGAGCAAAGCAAAGAGATGAA...GGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp TCCAGCAAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTAGTCACCATCCATGCTaGCCCTGCCTTCCTGCGTGT +
Preference number: 4 (lower is better)
Translates to: SSKTIQHSFMQIKYMTLPSHHPC*PCLPAC
Trigger: ACACGCAGGAAGGCAGGGCCAGCATGGATGGTGACT...AGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTTGCTGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp AAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTCCCCAGCTGTGGTCTTTTTCTTaGCAGCCTGGCCCGACACCA +
Preference number: 4 (lower is better)
Translates to: KTIQHSFMQIKYMTLPPQLWSFS*QPGPTP
Trigger: TGGTGTCGGGCCAGGCTGCCAAGAAAAAGACCACAG...CTGGGGAGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp AGCAAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTCCCGGGATAATGGGGTCTTaGCTCTTCACTGGCTCAGGG +
Preference number: 4 (lower is better)
Translates to: SKTIQHSFMQIKYMTLPPGIMGS*LFTGSG
Trigger: CCCTGAGCCAGTGAAGAGCCAAGACCCCATTATCCC...GGGAGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTTGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp TATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGTCAATATATTCCGTATaGGGAACTGTTGGGATCATG +
Preference number: 4 (lower is better)
Translates to: YMTLPPQKGNTSTASSFMSIYSV*GTVGIM
Trigger: CATGATCCCAACAGTTCCCCATACGGAATATATTGA...CATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
3UTR CAA 72 bp TGCTTGAGGAACCACGGTCAGTTTTGTCCAGTACACTaGAGAGACAGAATAAGACCTGGAGAGCTTTGTTTG +
Preference number: 4 (lower is better)
Translates to: CLRNHGQFCPVH*RDRIRPGELCL
Trigger: CAAACAAAGCTCTCCAGGTCTTATTCTGTCTCTCAAGTGTACTGGACAAAACTGACCGTGGTTCCTCAAGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR TCA 90 bp TACTGGGATTATAGGGTCTTGATTCTTTATAGGCCCAAGAACCACAGGGCTTTGTGTCAGTCCATGCTCTaGATTCATTCCTGTAAGAGC +
Preference number: 4 (lower is better)
Translates to: YWDYRVLILYRPKNHRALCQSML*IHSCKS
Trigger: GCTCTTACAGGAATGAATTCAGAGCATGGACTGACA...CAAAGCCCTGTGGTTCTTGGGCCTATAAAGAATCAAGACCCTATAATCCCAGTA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
CDS-3UTR GCA 90 bp AAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCCTTGATGTCAGTCCATaGTCTGAATTCATTCCTGTA +
Preference number: 4 (lower is better)
Translates to: KYMTLPPQKGNTSTASSFLDVSP*SEFIPV
Trigger: TACAGGAATGAATTCAGAGCATGGACTGACATCAAG...GAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR GCA 90 bp AAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTCCCCAGCTGTGGGCAGTTGAGTaGCTTTGGGACCTTGAGTCT +
Preference number: 4 (lower is better)
Translates to: KTIQHSFMQIKYMTLPPQLWAVE*LWDLES
Trigger: AGACTCAAGGTCCCAAAGGCACTCAACTGCCCACAG...CTGGGGAGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp TCCAGCAAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTAGTCACCATCCATGCTaGCCCTGCCTTCCTACGTGT +
Preference number: 4 (lower is better)
Translates to: SSKTIQHSFMQIKYMTLPSHHPC*PCLPTC
Trigger: ACACGTAGGAAGGCAGGGCCAGCATGGATGGTGACT...AGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTTGCTGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp ATGCAGATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCATCCTTAGTGCTTGCTaGAACCACAGGACTCTGATT +
Preference number: 4 (lower is better)
Translates to: MQIKYMTLPPQKGNTSTAILSAC*NHRTLI
Trigger: AATCAGAGTCCTGTGGTTCCAGCAAGCACTAAGGAT...GGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAATCTGCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
3UTR CAA 72 bp ATACAGCACAGTTTCATGCAGATTAAATATATGACTTaGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGC +
Preference number: 4 (lower is better)
Translates to: IQHSFMQIKYMT*PPQKGNTSTAS
Trigger: GCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR GCA 90 bp AAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTCCCCAGGGCTCCGTATTCTTCTaGGATCCATGGCCTTGTTGT +
Preference number: 4 (lower is better)
Translates to: KTIQHSFMQIKYMTLPPQGSVFF*DPWPCC
Trigger: ACAACAAGGCCATGGATCGCAGAAGAATACGGAGCC...CTGGGGAGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp AGCAAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTCCCAACCATCTTGTCATCTaGGGGCTTGTACTGGGGCTT +
Preference number: 4 (lower is better)
Translates to: SKTIQHSFMQIKYMTLPPNHLVI*GLVLGL
Trigger: AAGCCCCAGTACAAGCCCCCAGATGACAAGATGGTT...GGGAGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTTGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp AAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTCCCCAGACTGGGCGCTGTAGCTaGTCTCATGAACCATCTTGT +
Preference number: 4 (lower is better)
Translates to: KTIQHSFMQIKYMTLPPQTGRCS*SHEPSC
Trigger: ACAAGATGGTTCATGAGACCAGCTACAGCGCCCAGT...CTGGGGAGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp CTAAAAACAAAGGCTTGCCCAGTGCTGATGCATTCATTTTCAAACATGTCTCAACCACCTGCTTGTCTTTaGCCTTCCTTGGGGGTTTAT +
Preference number: 4 (lower is better)
Translates to: LKTKACPVLMHSFSNMSQPPACL*PSLGVY
Trigger: ATAAACCCCCAAGGAAGGCCAAAGACAAGCAGGTGG...TTGAGACATGTTTGAAAATGAATGCATCAGCACTGGGCAAGCCTTTGTTTTTAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR CCA 90 bp AAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTCCCCAGGCCTTGATCCTTGTGTaGCTCTTTGGTTACAGGACC +
Preference number: 4 (lower is better)
Translates to: KTIQHSFMQIKYMTLPPQALILV*LFGYRT
Trigger: GGTCCTGTAACCAAAGAGCCACACAAGGATCAAGGC...CTGGGGAGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp AGCAAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTCCCTCCTTCAAAGGCTCTTaGCCTTTTGGAAGACCTGGG +
Preference number: 4 (lower is better)
Translates to: SKTIQHSFMQIKYMTLPPSFKGS*PFGRPG
Trigger: CCCAGGTCTTCCAAAAGGCCAAGAGCCTTTGAAGGA...GGGAGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTTGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp AAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTCCCCAGAGGAACTTGATCTTTTaGCAGTCCTGGCACCACAGG +
Preference number: 4 (lower is better)
Translates to: KTIQHSFMQIKYMTLPPQRNLIF*QSWHHR
Trigger: CCTGTGGTGCCAGGACTGCCAAAAGATCAAGTTCCT...CTGGGGAGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp AGCAAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTCCCCCGAGGTGCTGGTGTTaGGAAGCTTTGATCCTTAGT +
Preference number: 4 (lower is better)
Translates to: SKTIQHSFMQIKYMTLPPPRCWC*EALILS
Trigger: ACTAAGGATCAAAGCTTCCCAACACCAGCACCTCGG...GGGAGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTTGCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp CAGATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCAATATATTCCGTATaGGGAACTGTTGGGATCATG +
Preference number: 4 (lower is better)
Translates to: QIKYMTLPPQKGNTSTASSIYSV*GTVGIM
Trigger: CATGATCCCAACAGTTCCCCATACGGAATATATTGA...GCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAATCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR TCA 90 bp TCTGCTAAAAACAAAGGCTTGCCCAGTGCTGATGCATTCATTTTCAAACATGTCTGTCAGTCCATGCTCTaGATTCATTCCTGTAAGAGC +
Preference number: 4 (lower is better)
Translates to: SAKNKGLPSADAFIFKHVCQSML*IHSCKS
Trigger: GCTCTTACAGGAATGAATTCAGAGCATGGACTGACA...GACATGTTTGAAAATGAATGCATCAGCACTGGGCAAGCCTTTGTTTTTAGCAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR TCA 90 bp TCCAGCAAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTGGTGTTGGGAAGCTTTaGTCCTTAGTGCTTGCTGGA +
Preference number: 4 (lower is better)
Translates to: SSKTIQHSFMQIKYMTLPGVGKL*SLVLAG
Trigger: TCCAGCAAGCACTAAGGATCAAAGCTTCCCAACACC...AGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTTGCTGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR GCA 90 bp ATGCAGATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCCTTGATGTCAGTCCATaGTCTGAATTCATTCCTGTA +
Preference number: 4 (lower is better)
Translates to: MQIKYMTLPPQKGNTSTALDVSP*SEFIPV
Trigger: TACAGGAATGAATTCAGAGCATGGACTGACATCAAG...GGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAATCTGCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR GCA 90 bp CAAAGGTACTGGGATTATAGGGTCTTGATTCTTTATAGGCCCAAGAACCACAGGCTTGATGTCAGTCCATaGTCTGAATTCATTCCTGTA +
Preference number: 4 (lower is better)
Translates to: QRYWDYRVLILYRPKNHRLDVSP*SEFIPV
Trigger: TACAGGAATGAATTCAGAGCATGGACTGACATCAAG...CCTGTGGTTCTTGGGCCTATAAAGAATCAAGACCCTATAATCCCAGTACCTTTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
CDS-3UTR GCA 90 bp TCCAGCAAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTGGCTCCGTATTCTTCTaGGATCCATGGCCTTGTTGT +
Preference number: 4 (lower is better)
Translates to: SSKTIQHSFMQIKYMTLPGSVFF*DPWPCC
Trigger: ACAACAAGGCCATGGATCGCAGAAGAATACGGAGCC...AGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTTGCTGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp TCCAGCAAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTAACCATCTTGTCATCTaGGGGCTTGTACTGGGGCTT +
Preference number: 4 (lower is better)
Translates to: SSKTIQHSFMQIKYMTLPNHLVI*GLVLGL
Trigger: AAGCCCCAGTACAAGCCCCCAGATGACAAGATGGTT...AGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTTGCTGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp TCCAGCAAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTCCACCTGCTTGTCTTTaGCCTTCCTTGGGGGTTTAT +
Preference number: 4 (lower is better)
Translates to: SSKTIQHSFMQIKYMTLPPPACL*PSLGVY
Trigger: ATAAACCCCCAAGGAAGGCCAAAGACAAGCAGGTGG...AGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTTGCTGGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp TCCAGCAAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTGTCCCTTCAGATACCTaGGGGCTGTTGTATCTGTAC +
Preference number: 4 (lower is better)
Translates to: SSKTIQHSFMQIKYMTLPVPSDT*GLLYLY
Trigger: GTACAGATACAACAGCCCCCAGGTATCTGAAGGGAC...AGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTTGCTGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp TCCAGCAAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTGCAGTTGAGTGCCTTTaGGACCTTGAGTCTTCAGAG +
Preference number: 4 (lower is better)
Translates to: SSKTIQHSFMQIKYMTLPAVECL*DLESSE
Trigger: CTCTGAAGACTCAAGGTCCCAAAGGCACTCAACTGC...AGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTTGCTGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR GCA 90 bp AGCAAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTCCCTTCATCTCTTTGCTTTaGTCCTTGTCGTCGGGTTTG +
Preference number: 4 (lower is better)
Translates to: SKTIQHSFMQIKYMTLPPFISLL*SLSSGL
Trigger: CAAACCCGACGACAAGGAGCAAAGCAAAGAGATGAA...GGGAGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTTGCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR TCA 90 bp TCCAGCAAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTTGTCAGTCCATGCTCTaGATTCATTCCTGTAAGAGC +
Preference number: 4 (lower is better)
Translates to: SSKTIQHSFMQIKYMTLPCQSML*IHSCKS
Trigger: GCTCTTACAGGAATGAATTCAGAGCATGGACTGACA...AGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTTGCTGGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR GCA 90 bp TCTGCTAAAAACAAAGGCTTGCCCAGTGCTGATGCATTCATTTTCAAACATGTCCTTGATGTCAGTCCATaGTCTGAATTCATTCCTGTA +
Preference number: 4 (lower is better)
Translates to: SAKNKGLPSADAFIFKHVLDVSP*SEFIPV
Trigger: TACAGGAATGAATTCAGAGCATGGACTGACATCAAG...GACATGTTTGAAAATGAATGCATCAGCACTGGGCAAGCCTTTGTTTTTAGCAGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR CCA 90 bp TCCAGCAAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTATCCTTAGTGCTTGCTaGAACCACAGGACTCTGATT +
Preference number: 4 (lower is better)
Translates to: SSKTIQHSFMQIKYMTLPILSAC*NHRTLI
Trigger: AATCAGAGTCCTGTGGTTCCAGCAAGCACTAAGGAT...AGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTTGCTGGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CCA 90 bp TCCAGCAAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTTCAATATATTCCGTATaGGGAACTGTTGGGATCATG +
Preference number: 4 (lower is better)
Translates to: SSKTIQHSFMQIKYMTLPSIYSV*GTVGIM
Trigger: CATGATCCCAACAGTTCCCCATACGGAATATATTGA...AGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTTGCTGGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS CCA 90 bp CCAGCCCGCTCCGGCCGGGGGCGGCTACAGTCTCGCGGTCGACGCTaGGCCCGGGCGCAGGCCCTGTTGCCCGGGCAACTGCATCCGACT +
Preference number: 5 (lower is better)
Translates to: PARSGRGRLQSRGRR*ARAQALLPGQLHPT
Trigger: AGTCGGATGCAGTTGCCCGGGCAACAGGGCCTGCGCCCGGGCCCAGCGTCGACCGCGAGACTGTAGCCGCCCCCGGCCGGAGCGGGCTGG
77% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
CDS GCA 90 bp ACTGGGTCTCGCGCTCGAAGGGCGCGTCGGACGGCTGGTACTCGCTaGGCGGCCGGCAGCTTGGCTCGGGCCGCTGCACTTTCCAGGCGC +
Preference number: 5 (lower is better)
Translates to: TGSRARRARRTAGTR*AAGSLARAAALSRR
Trigger: GCGCCTGGAAAGTGCAGCGGCCCGAGCCAAGCTGCCGGCCGCGCAGCGAGTACCAGCCGTCCGACGCGCCCTTCGAGCGCGAGACCCAGT
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
CDS CCA 90 bp TCCCCGCGCCGGGGCAGCGGCCAGGCGCGGAAGTCCTTCTGGTACTaGGTCTCGCGCTCGAAGGGCGCGTCGGACGGCTGGTACTCGCTG +
Preference number: 5 (lower is better)
Translates to: SPRRGSGQARKSFWY*VSRSKGASDGWYSL
Trigger: CAGCGAGTACCAGCCGTCCGACGCGCCCTTCGAGCGCGAGACCCAGTACCAGAAGGACTTCCGCGCCTGGCCGCTGCCCCGGCGCGGGGA
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
CDS CCA 90 bp GGATGGTCCCCGCGCCGGGGCAGCGGCCAGGCGCGGAAGTCCTTCTaGTACTGGGTCTCGCGCTCGAAGGGCGCGTCGGACGGCTGGTAC +
Preference number: 5 (lower is better)
Translates to: GWSPRRGSGQARKSF*YWVSRSKGASDGWY
Trigger: GTACCAGCCGTCCGACGCGCCCTTCGAGCGCGAGACCCAGTACCAGAAGGACTTCCGCGCCTGGCCGCTGCCCCGGCGCGGGGACCATCC
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
CDS GCA 90 bp GCGGTCGACGCTGGGCCCGGGCGCAGGCCCTGTTGCCCGGGCAACTaGATCCGACTCTCCCTGGGCTGGCTGCGTCTCTATGGCGACAGC +
Preference number: 5 (lower is better)
Translates to: AVDAGPGRRPCCPGN*IRLSLGWLRLYGDS
Trigger: GCTGTCGCCATAGAGACGCAGCCAGCCCAGGGAGAGTCGGATGCAGTTGCCCGGGCAACAGGGCCTGCGCCCGGGCCCAGCGTCGACCGC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
CDS GCA 90 bp GGCTACAGTCTCGCGGTCGACGCTGGGCCCGGGCGCAGGCCCTGTTaGCCGGGCAACTGCATCCGACTCTCCCTGGGCTGGCTGCGTCTC +
Preference number: 5 (lower is better)
Translates to: GYSLAVDAGPGRRPC*PGNCIRLSLGWLRL
Trigger: GAGACGCAGCCAGCCCAGGGAGAGTCGGATGCAGTTGCCCGGGCAACAGGGCCTGCGCCCGGGCCCAGCGTCGACCGCGAGACTGTAGCC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
CDS GCA 90 bp GGCCGGCCCCGCCTTCCTCCTCGTGTCGCGCTCGTCTGCACCAGATaGCTTTCCAGCTGCGGGGCCGCCCTCCTGGGTCTGAGACTGGGC +
Preference number: 5 (lower is better)
Translates to: GRPRLPPRVALVCTR*LSSCGAALLGLRLG
Trigger: GCCCAGTCTCAGACCCAGGAGGGCGGCCCCGCAGCTGGAAAGGCATCTGGTGCAGACGAGCGCGACACGAGGAGGAAGGCGGGGCCGGCC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS GCA 90 bp TGCCTTCCTACGTGTGTCGCGCTGGTCTACACCGGACGCCTTTCCTaGCGCCAGCACCCCGGCTCCTCCAGCACCCTCCGGGTCCCGGGC +
Preference number: 5 (lower is better)
Translates to: CLPTCVALVYTGRLS*RQHPGSSSTLRVPG
Trigger: GCCCGGGACCCGGAGGGTGCTGGAGGAGCCGGGGTGCTGGCGGCAGGAAAGGCGTCCGGTGTAGACCAGCGCGACACACGTAGGAAGGCA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS CCA 90 bp GAAGGGCGCGTCGGACGGCTGGTACTCGCTGCGCGGCCGGCAGCTTaGCTCGGGCCGCTGCACTTTCCAGGCGCGGTAGTCCTGTCGCAT +
Preference number: 5 (lower is better)
Translates to: EGRVGRLVLAARPAA*LGPLHFPGAVVLSH
Trigger: ATGCGACAGGACTACCGCGCCTGGAAAGTGCAGCGGCCCGAGCCAAGCTGCCGGCCGCGCAGCGAGTACCAGCCGTCCGACGCGCCCTTC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
CDS CCA 90 bp TCCTTCTGGTACTGGGTCTCGCGCTCGAAGGGCGCGTCGGACGGCTaGTACTCGCTGCGCGGCCGGCAGCTTGGCTCGGGCCGCTGCACT +
Preference number: 5 (lower is better)
Translates to: SFWYWVSRSKGASDG*YSLRGRQLGSGRCT
Trigger: AGTGCAGCGGCCCGAGCCAAGCTGCCGGCCGCGCAGCGAGTACCAGCCGTCCGACGCGCCCTTCGAGCGCGAGACCCAGTACCAGAAGGA
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
CDS CCA 90 bp GCATCTGCCACCGCGCGCCCCTTGCCTCCTTCAGGCCCTGTGCCTTaGGCATGGGCAGCGGGTGTCTGTTCGTGCCCCTCCGAGCGACGC +
Preference number: 5 (lower is better)
Translates to: ASATARPLPPSGPVP*AWAAGVCSCPSERR
Trigger: GCGTCGCTCGGAGGGGCACGAACAGACACCCGCTGCCCATGCCCAAGGCACAGGGCCTGAAGGAGGCAAGGGGCGCGCGGTGGCAGATGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS GCA 90 bp CTTCCTCCTCGTGTCGCGCTCGTCTGCACCAGATGCCTTTCCAGCTaGGGGGCCGCCCTCCTGGGTCTGAGACTGGGCGGGTGGCAGCGG +
Preference number: 5 (lower is better)
Translates to: LPPRVALVCTRCLSS*GAALLGLRLGGWQR
Trigger: CCGCTGCCACCCGCCCAGTCTCAGACCCAGGAGGGCGGCCCCGCAGCTGGAAAGGCATCTGGTGCAGACGAGCGCGACACGAGGAGGAAG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS CCA 90 bp GAACAGGTTGGGAAGGCTGCGAAGTCGCAGGGATTTGCACCGGCTTaGGGATCCAGGGATGGTCCCCGCGCCGGGGCAGCGGCCAGGCGC +
Preference number: 5 (lower is better)
Translates to: EQVGKAAKSQGFAPA*GSRDGPRAGAAARR
Trigger: GCGCCTGGCCGCTGCCCCGGCGCGGGGACCATCCCTGGATCCCCAAGCCGGTGCAAATCCCTGCGACTTCGCAGCCTTCCCAACCTGTTC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
CDS CCA 90 bp CTTTCCAGCTGCGGGGCCGCCCTCCTGGGTCTGAGACTGGGCGGGTaGCAGCGGCGTCTCCTCGTGCCCTTCCGTGCGAGTCACCATCCA +
Preference number: 5 (lower is better)
Translates to: LSSCGAALLGLRLGG*QRRLLVPFRASHHP
Trigger: TGGATGGTGACTCGCACGGAAGGGCACGAGGAGACGCCGCTGCCACCCGCCCAGTCTCAGACCCAGGAGGGCGGCCCCGCAGCTGGAAAG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS GCA 90 bp TCTGAGACTGGGCGGGTGGCAGCGGCGTCTCCTCGTGCCCTTCCGTaGGAGTCACCATCCACGCGGGTCCAGCCTTCCTGCGTGTGTCAC +
Preference number: 5 (lower is better)
Translates to: SETGRVAAASPRALP*ESPSTRVQPSCVCH
Trigger: GTGACACACGCAGGAAGGCTGGACCCGCGTGGATGGTGACTCGCACGGAAGGGCACGAGGAGACGCCGCTGCCACCCGCCCAGTCTCAGA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS CCA 90 bp CGAGTCACCATCCATGCTGGCCCTGCCTTCCTACGTGTGTCGCGCTaGTCTACACCGGACGCCTTTCCTGCCGCCAGCACCCCGGCTCCT +
Preference number: 5 (lower is better)
Translates to: RVTIHAGPAFLRVSR*STPDAFPAASTPAP
Trigger: AGGAGCCGGGGTGCTGGCGGCAGGAAAGGCGTCCGGTGTAGACCAGCGCGACACACGTAGGAAGGCAGGGCCAGCATGGATGGTGACTCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS TCA 90 bp GCTGCGGAGGGGCGCCTGGGTGTTCGGTGGCCTCCGAGTACTTGGTaGAAACCAGCGGCACCGCAATGTCCGCCTTGTCCAGCTGGTTCC +
Preference number: 5 (lower is better)
Translates to: AAEGRLGVRWPPSTW*KPAAPQCPPCPAGS
Trigger: GGAACCAGCTGGACAAGGCGGACATTGCGGTGCCGCTGGTTTTCACCAAGTACTCGGAGGCCACCGAACACCCAGGCGCCCCTCCGCAGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
CDS TCA 90 bp CGAGTCACCATCCACGCGGGTCCAGCCTTCCTGCGTGTGTCACGCTaGTCTGCACCGGACGCCTTTCCAGCTGCAGGACCACCCTCCTGG +
Preference number: 5 (lower is better)
Translates to: RVTIHAGPAFLRVSR*SAPDAFPAAGPPSW
Trigger: CCAGGAGGGTGGTCCTGCAGCTGGAAAGGCGTCCGGTGCAGATCAGCGTGACACACGCAGGAAGGCTGGACCCGCGTGGATGGTGACTCG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS GCA 90 bp CACCATCCACGCGGGTCCAGCCTTCCTGCGTGTGTCACGCTGATCTaGACCGGACGCCTTTCCAGCTGCAGGACCACCCTCCTGGGTCTG +
Preference number: 5 (lower is better)
Translates to: HHPRGSSLPACVTLI*TGRLSSCRTTLLGL
Trigger: CAGACCCAGGAGGGTGGTCCTGCAGCTGGAAAGGCGTCCGGTGCAGATCAGCGTGACACACGCAGGAAGGCTGGACCCGCGTGGATGGTG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS GCA 90 bp CGTGCCCTTCCGTGCGAGTCACCATCCACGCGGGTCCAGCCTTCCTaGGTGTGTCACGCTGATCTGCACCGGACGCCTTTCCAGCTGCAG +
Preference number: 5 (lower is better)
Translates to: RALPCESPSTRVQPS*VCHADLHRTPFQLQ
Trigger: CTGCAGCTGGAAAGGCGTCCGGTGCAGATCAGCGTGACACACGCAGGAAGGCTGGACCCGCGTGGATGGTGACTCGCACGGAAGGGCACG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS GCA 90 bp TACTGTACTCGCCACCTCCTCCCGGATTTGCCTGTTGAGGGCATCTaGCACCGCGCGCCCCTTGCCTCCTTCAGGCCCTGTGCCTTGGGC +
Preference number: 5 (lower is better)
Translates to: YCTRHLLPDLPVEGI*HRAPLASFRPCALG
Trigger: GCCCAAGGCACAGGGCCTGAAGGAGGCAAGGGGCGCGCGGTGGCAGATGCCCTCAACAGGCAAATCCGGGAGGAGGTGGCGAGTACAGTA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS TCA 90 bp CGAGTCACCATCCATGCTGGCCCTGCCTTCCTGCGTGTGTCACGCTaGTCTGCACCGGACGCCTTTCCAGCTGCAGGACCACCCTCCTGG +
Preference number: 5 (lower is better)
Translates to: RVTIHAGPAFLRVSR*SAPDAFPAAGPPSW
Trigger: CCAGGAGGGTGGTCCTGCAGCTGGAAAGGCGTCCGGTGCAGATCAGCGTGACACACGCAGGAAGGCAGGGCCAGCATGGATGGTGACTCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS GCA 90 bp CACCATCCATGCTGGCCCTGCCTTCCTGCGTGTGTCACGCTGATCTaGACCGGACGCCTTTCCAGCTGCAGGACCACCCTCCTGGGTCTG +
Preference number: 5 (lower is better)
Translates to: HHPCWPCLPACVTLI*TGRLSSCRTTLLGL
Trigger: CAGACCCAGGAGGGTGGTCCTGCAGCTGGAAAGGCGTCCGGTGCAGATCAGCGTGACACACGCAGGAAGGCAGGGCCAGCATGGATGGTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS GCA 90 bp CGTGCCCTTCGCTGCGAGTCACCATCCATGCTGGCCCTGCCTTCCTaGGTGTGTCACGCTGATCTGCACCGGACGCCTTTCCAGCTGCAG +
Preference number: 5 (lower is better)
Translates to: RALRCESPSMLALPS*VCHADLHRTPFQLQ
Trigger: CTGCAGCTGGAAAGGCGTCCGGTGCAGATCAGCGTGACACACGCAGGAAGGCAGGGCCAGCATGGATGGTGACTCGCAGCGAAGGGCACG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS TCA 90 bp AAGAGCTGCTTACTGTACTCGCCACCTCCTCCCGGATTTGCCTGTTaGGGGCATCTGCCACCGCGCGCCCCTTGCCTCCTTCAGGCCCTG +
Preference number: 5 (lower is better)
Translates to: KSCLLYSPPPPGFAC*GHLPPRAPCLLQAL
Trigger: CAGGGCCTGAAGGAGGCAAGGGGCGCGCGGTGGCAGATGCCCTCAACAGGCAAATCCGGGAGGAGGTGGCGAGTACAGTAAGCAGCTCTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS GCA 90 bp GGGCAGAGGCTTCTCTTCGTGCCCTTCGCTGCGAGTCACCATCCATaGTGGCCCTGCCTTCCTGCGTGTGTCACGCTGATCTGCACCGGA +
Preference number: 5 (lower is better)
Translates to: GQRLLFVPFAASHHP*WPCLPACVTLICTG
Trigger: TCCGGTGCAGATCAGCGTGACACACGCAGGAAGGCAGGGCCAGCATGGATGGTGACTCGCAGCGAAGGGCACGAAGAGAAGCCTCTGCCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS GCA 90 bp TCTGGGATTGGGCTGGGGGCAGAGGCTTCTCTTCGTGCCCTTCGCTaGGAGTCACCATCCATGCTGGCCCTGCCTTCCTGCGTGTGTCAC +
Preference number: 5 (lower is better)
Translates to: SGIGLGAEASLRALR*ESPSMLALPSCVCH
Trigger: GTGACACACGCAGGAAGGCAGGGCCAGCATGGATGGTGACTCGCAGCGAAGGGCACGAAGAGAAGCCTCTGCCCCCAGCCCAATCCCAGA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp CTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGCATGCGCGGCCGGCAGCTaGGCTCGGGCCGCTGCACTT +
Preference number: 5 (lower is better)
Translates to: LPRRETLPLPAPSWHFRACAAGS*ARAAAL
Trigger: AAGTGCAGCGGCCCGAGCCAAGCTGCCGGCCGCGCA...TGCCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000207883.2
CDS-3UTR CAA 90 bp CTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGCAGCCACCGCGCGCCCCTaGCCTCCTTCAGGCCCTGTG +
Preference number: 5 (lower is better)
Translates to: LPRRETLPLPAPSWHFRAATARP*PPSGPV
Trigger: CACAGGGCCTGAAGGAGGCAAGGGGCGCGCGGTGGC...TGCCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS GCA 90 bp CTTCTCTTCGTGCCCTTCGCTGCGAGTCACCATCCATGCTGGCCCTaGCTTCCTGCGTGTGTCACGCTGATCTGCACCGGACGCCTTTCC +
Preference number: 5 (lower is better)
Translates to: LLFVPFAASHHPCWP*LPACVTLICTGRLS
Trigger: GGAAAGGCGTCCGGTGCAGATCAGCGTGACACACGCAGGAAGGCAGGGCCAGCATGGATGGTGACTCGCAGCGAAGGGCACGAAGAGAAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp TCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGCAAGCCACCGCGCGCCCCTaGCCTCCTTCAGGCCCTGTG +
Preference number: 5 (lower is better)
Translates to: SPEGKHFHCQLLHGISGQATARP*PPSGPV
Trigger: CACAGGGCCTGAAGGAGGCAAGGGGCGCGCGGTGGC...TTGCCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp CGTGGGAGCTCGATCCTTCTCGGGCTCGGGGATCACAGGGCCTGGGTCCTTCCGTACTGGGGCTTGGCTTaGATGGGTTTCACAGGCTTG +
Preference number: 5 (lower is better)
Translates to: RGSSILLGLGDHRAWVLPYWGLA*MGFTGL
Trigger: CAAGCCTGTGAAACCCATCAAAGCCAAGCCCCAGTA...CGGAAGGACCCAGGCCCTGTGATCCCCGAGCCCGAGAAGGATCGAGCTCCCACG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
CDS-3UTR CAA 90 bp CTGCTGTCTGGGAGCTGGGGCAGAGAACGGGAAGCCGGGCATAGCTTCCAGGAGTCTGTGGTCTTTTTCTaGGCAGCCTGGCCCGACACC +
Preference number: 5 (lower is better)
Translates to: LLSGSWGREREAGHSFQESVVFF*AAWPDT
Trigger: GGTGTCGGGCCAGGCTGCCAAGAAAAAGACCACAGA...CTCCTGGAAGCTATGCCCGGCTTCCCGTTCTCTGCCCCAGCTCCCAGACAGCAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS GCA 90 bp CTTCTCTTCGTGCCCTTCGTTGCGAGTCACCATCCATGCTGGCCCTaGCTTCCTACGTGTGTCGCGCTGGTCTACACCGGACGCCTTTCC +
Preference number: 5 (lower is better)
Translates to: LLFVPFVASHHPCWP*LPTCVALVYTGRLS
Trigger: GGAAAGGCGTCCGGTGTAGACCAGCGCGACACACGTAGGAAGGCAGGGCCAGCATGGATGGTGACTCGCAACGAAGGGCACGAAGAGAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp CTGGGAGCTGGGGCAGAGAACGGGAAGCCGGGCATAGCTTCCAGGAGTTTTGCATCCTTGTCGTCGGGTTaGGTAGCACTGGGGCCCTCT +
Preference number: 5 (lower is better)
Translates to: LGAGAENGKPGIASRSFASLSSG*VALGPS
Trigger: AGAGGGCCCCAGTGCTACCAAACCCGACGACAAGGA...TGCAAAACTCCTGGAAGCTATGCCCGGCTTCCCGTTCTCTGCCCCAGCTCCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR CAA 90 bp TGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGTTCAGGCCCTGTGCCTaGGGCATGGGCAGCGGGTGT +
Preference number: 5 (lower is better)
Translates to: CLPRRETLPLPAPSWHFRFRPCA*GMGSGC
Trigger: ACACCCGCTGCCCATGCCCAAGGCACAGGGCCTGAA...CCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp TGGCCACATGCTCAGCACATTGACCTTTCTGTGGAGCAGAGCAAGAGCTCGGTCTTCAGGCCCTGTGCCTaGGGCATGGGCAGCGGGTGT +
Preference number: 5 (lower is better)
Translates to: WPHAQHIDLSVEQSKSSVFRPCA*GMGSGC
Trigger: ACACCCGCTGCCCATGCCCAAGGCACAGGGCCTGAA...GACCGAGCTCTTGCTCTGCTCCACAGAAAGGTCAATGTGCTGAGCATGTGGCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR CAA 90 bp ACCTGGGGCCACAGAGCCTTGATCCTTGTGTGGCTCTTTGGTTACAGGACCTCGTCCCGGATTTGCCTGTaGAGGGCATCTGCCACCGCG +
Preference number: 5 (lower is better)
Translates to: TWGHRALILVWLFGYRTSSRICL*RASATA
Trigger: CGCGGTGGCAGATGCCCTCAACAGGCAAATCCGGGA...CGAGGTCCTGTAACCAAAGAGCCACACAAGGATCAAGGCTCTGTGGCCCCAGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
CDS-3UTR CAA 90 bp GCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGTCCCGGATTTGCCTGTaGAGGGCATCTGCCACCGCG +
Preference number: 5 (lower is better)
Translates to: ASPEGKHFHCQLLHGISGSRICL*RASATA
Trigger: CGCGGTGGCAGATGCCCTCAACAGGCAAATCCGGGA...CCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS GCA 90 bp GGGCCCTCTGTGGTCTTTTTCTTGGCAGCCTGGCCCGACACCACCTaGTTGTCTTTGGCCTTCCTTGGGGGTTTATGGCTCGTTGAGGTC +
Preference number: 5 (lower is better)
Translates to: GPSVVFFLAAWPDTT*LSLAFLGGLWLVEV
Trigger: GACCTCAACGAGCCATAAACCCCCAAGGAAGGCCAAAGACAAGCAGGTGGTGTCGGGCCAGGCTGCCAAGAAAAAGACCACAGAGGGCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000068973.11
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp AAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCTGCGCGGCCGGCAGCTaGGCTCGGGCCGCTGCACTT +
Preference number: 5 (lower is better)
Translates to: KYMTLPPQKGNTSTASSFCAAGS*ARAAAL
Trigger: AAGTGCAGCGGCCCGAGCCAAGCTGCCGGCCGCGCA...GAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000207883.2
CDS-3UTR CAA 90 bp TCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGCAATTCAGGCCCTGTGCCTaGGGCATGGGCAGCGGGTGT +
Preference number: 5 (lower is better)
Translates to: SPEGKHFHCQLLHGISGQFRPCA*GMGSGC
Trigger: ACACCCGCTGCCCATGCCCAAGGCACAGGGCCTGAA...TTGCCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp GGTGCACACGAAGCCTTCCCTGTCTGCACGGAGAGACTTTGTTGGCTCTTTGGACTGCGATCCATGGCCTaGTTGTCCGCTGCACTGGGC +
Preference number: 5 (lower is better)
Translates to: GAHEAFPVCTERLCWLFGLRSMA*LSAALG
Trigger: GCCCAGTGCAGCGGACAACAAGGCCATGGATCGCAG...TCCAAAGAGCCAACAAAGTCTCTCCGTGCAGACAGGGAAGGCTTCGTGTGCACC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR CAA 90 bp TGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGCTGCGATCCATGGCCTaGTTGTCCGCTGCACTGGGC +
Preference number: 5 (lower is better)
Translates to: CLPRRETLPLPAPSWHFRLRSMA*LSAALG
Trigger: GCCCAGTGCAGCGGACAACAAGGCCATGGATCGCAG...CCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp GCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGCCCGACACCACCTGCTaGTCTTTGGCCTTCCTTGGG +
Preference number: 5 (lower is better)
Translates to: ASPEGKHFHCQLLHGISGPDTTC*SLAFLG
Trigger: CCCAAGGAAGGCCAAAGACAAGCAGGTGGTGTCGGG...CCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp CTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGCACGAAGTCGCAGGGATTaGCACCGGCTTGGGGATCCA +
Preference number: 5 (lower is better)
Translates to: LPRRETLPLPAPSWHFRARSRRD*HRLGDP
Trigger: TGGATCCCCAAGCCGGTGCAAATCCCTGCGACTTCG...TGCCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000207883.2
CDS-3UTR CAA 90 bp CAGATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCGCCACCGCGCGCCCCTaGCCTCCTTCAGGCCCTGTG +
Preference number: 5 (lower is better)
Translates to: QIKYMTLPPQKGNTSTASATARP*PPSGPV
Trigger: CACAGGGCCTGAAGGAGGCAAGGGGCGCGCGGTGGC...GCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAATCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp CTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCTCCCGGATTTGCCTGTaGAGGGCATCTGCCACCGCG +
Preference number: 5 (lower is better)
Translates to: LCLPRRETLPLPAPSWHFSRICL*RASATA
Trigger: CGCGGTGGCAGATGCCCTCAACAGGCAAATCCGGGA...GAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp TCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGCAACTGCGATCCATGGCCTaGTTGTCCGCTGCACTGGGC +
Preference number: 5 (lower is better)
Translates to: SPEGKHFHCQLLHGISGQLRSMA*LSAALG
Trigger: GCCCAGTGCAGCGGACAACAAGGCCATGGATCGCAG...TTGCCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp GCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGAGAGGGCTTTGGGCTTaGGCTGGTGCTAAGGGGACA +
Preference number: 5 (lower is better)
Translates to: ASPEGKHFHCQLLHGISGRGLWA*AGAKGT
Trigger: TGTCCCCTTAGCACCAGCCAAAGCCCAAAGCCCTCT...CCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS GCA 90 bp GTAGAGGCTCCGTATTCTTCTGCGATCCATGGCCTTGTTGTCCGCTaGACTGGGCTTATTGGCCTCCCCTTTGAACTGGGCGCTGTAGCT +
Preference number: 5 (lower is better)
Translates to: VEAPYSSAIHGLVVR*TGLIGLPFELGAVA
Trigger: AGCTACAGCGCCCAGTTCAAAGGGGAGGCCAATAAGCCCAGTGCAGCGGACAACAAGGCCATGGATCGCAGAAGAATACGGAGCCTCTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp TATCGCACCAGGACATTTCTGGTGGATAGTTTGTGTTTCCTCATAAGTCAGGAGTGCGCGGCCGGCAGCTaGGCTCGGGCCGCTGCACTT +
Preference number: 5 (lower is better)
Translates to: YRTRTFLVDSLCFLISQECAAGS*ARAAAL
Trigger: AAGTGCAGCGGCCCGAGCCAAGCTGCCGGCCGCGCA...CTCCTGACTTATGAGGAAACACAAACTATCCACCAGAAATGTCCTGGTGCGATA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR CAA 90 bp GCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGTCTTCGTGCCCTTCGTaGCGAGTCACCATCCATGCT +
Preference number: 5 (lower is better)
Translates to: ASPEGKHFHCQLLHGISGSSCPS*RVTIHA
Trigger: AGCATGGATGGTGACTCGCAACGAAGGGCACGAAGA...CCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp TCCACTGCCAGCTCCTTCATGGCATTTCAGGGCAATCAAGGGGATCCCTCAATATCCCGGATTTGCCTGTaGAGGGCATCTGCCACCGCG +
Preference number: 5 (lower is better)
Translates to: STASSFMAFQGNQGDPSISRICL*RASATA
Trigger: CGCGGTGGCAGATGCCCTCAACAGGCAAATCCGGGA...TATTGAGGGATCCCCTTGATTGCCCTGAAATGCCATGAAGGAGCTGGCAGTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
CDS-3UTR CAA 90 bp GAAATGTACGAAGTGAGGAACGGGCTTGGTCACCTGCAGAGAGGTGACACCAAATCCCGGATTTGCCTGTaGAGGGCATCTGCCACCGCG +
Preference number: 5 (lower is better)
Translates to: EMYEVRNGLGHLQRGDTKSRICL*RASATA
Trigger: CGCGGTGGCAGATGCCCTCAACAGGCAAATCCGGGA...TTTGGTGTCACCTCTCTGCAGGTGACCAAGCCCGTTCCTCACTTCGTACATTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR CAA 90 bp GCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGTTGTCATCTGGGGGCTaGTACTGGGGCTTGGCTTTG +
Preference number: 5 (lower is better)
Translates to: ASPEGKHFHCQLLHGISGLSSGG*YWGLAL
Trigger: CAAAGCCAAGCCCCAGTACAAGCCCCCAGATGACAA...CCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp TCCACTGCCAGCTCCTTCATGGCATTTCAGGGCAATCAAGGGGATCCCTCAATACTGCGATCCATGGCCTaGTTGTCCGCTGCACTGGGC +
Preference number: 5 (lower is better)
Translates to: STASSFMAFQGNQGDPSILRSMA*LSAALG
Trigger: GCCCAGTGCAGCGGACAACAAGGCCATGGATCGCAG...TATTGAGGGATCCCCTTGATTGCCCTGAAATGCCATGAAGGAGCTGGCAGTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
CDS-3UTR CAA 90 bp ATTGACCTTTCTGTGGAGCAGAGCAAGAGCTCGGTCGGGGCTGGAGGGTGCATCACCACCTGCTTGTCTTaGGCCTTCCTTGGGGGTTTA +
Preference number: 5 (lower is better)
Translates to: IDLSVEQSKSSVGAGGCITTCLS*AFLGGL
Trigger: TAAACCCCCAAGGAAGGCCAAAGACAAGCAGGTGGT...GATGCACCCTCCAGCCCCGACCGAGCTCTTGCTCTGCTCCACAGAAAGGTCAAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR CAA 90 bp ATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCACCCGACACCACCTGCTaGTCTTTGGCCTTCCTTGGG +
Preference number: 5 (lower is better)
Translates to: MTLPPQKGNTSTASSFMAPDTTC*SLAFLG
Trigger: CCCAAGGAAGGCCAAAGACAAGCAGGTGGTGTCGGG...TGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp CTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGCATCTGTGGTCTTTTTCTaGGCAGCCTGGCCCGACACC +
Preference number: 5 (lower is better)
Translates to: LPRRETLPLPAPSWHFRASVVFF*AAWPDT
Trigger: GGTGTCGGGCCAGGCTGCCAAGAAAAAGACCACAGA...TGCCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp TGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGTCTGTGGTCTTTTTCTaGGCAGCCTGGCCCGACACC +
Preference number: 5 (lower is better)
Translates to: CLPRRETLPLPAPSWHFRSVVFF*AAWPDT
Trigger: GGTGTCGGGCCAGGCTGCCAAGAAAAAGACCACAGA...CCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp GCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGTGGCACCACAGGGCCTaGATCCTTCAAAGGCTCTTG +
Preference number: 5 (lower is better)
Translates to: ASPEGKHFHCQLLHGISGWHHRA*ILQRLL
Trigger: CAAGAGCCTTTGAAGGATCAAGGCCCTGTGGTGCCA...CCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS TCA 90 bp CCATGGCCTTGTTGTCCGCTGCACTGGGCTTATTGGCCTCCCCTTTaGACTGGGCGCTGTAGCTGGTCTCATGAACCATCTTGTCATCTG +
Preference number: 5 (lower is better)
Translates to: PWPCCPLHWAYWPPL*TGRCSWSHEPSCHL
Trigger: CAGATGACAAGATGGTTCATGAGACCAGCTACAGCGCCCAGTTCAAAGGGGAGGCCAATAAGCCCAGTGCAGCGGACAACAAGGCCATGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp CTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCACCGCAATGTCCGCCTaGTCCAGCTGGTTCCAGAAG +
Preference number: 5 (lower is better)
Translates to: LCLPRRETLPLPAPSWHFTAMSA*SSWFQK
Trigger: CTTCTGGAACCAGCTGGACAAGGCGGACATTGCGGT...GAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000207883.2
CDS-3UTR CAA 90 bp TCGGGGACCATAGGAGCTTCGTTCTTCAAAGAGGCCATGATGGAGACATGCTGGACCGCAATGTCCGCCTaGTCCAGCTGGTTCCAGAAG +
Preference number: 5 (lower is better)
Translates to: SGTIGASFFKEAMMETCWTAMSA*SSWFQK
Trigger: CTTCTGGAACCAGCTGGACAAGGCGGACATTGCGGT...CCAGCATGTCTCCATCATGGCCTCTTTGAAGAACGAAGCTCCTATGGTCCCCGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122101.8
CDS-3UTR CAA 90 bp ACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTGTGGCCTCCGAGTACTaGGTGAAAACCAGCGGCACC +
Preference number: 5 (lower is better)
Translates to: TLPPQKGNTSTASSFMAFVASEY*VKTSGT
Trigger: GGTGCCGCTGGTTTTCACCAAGTACTCGGAGGCCAC...AAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000207883.2
CDS-3UTR CAA 90 bp ACTAGGTGTTGGGCACATCAGCAGTATGCTAAGGGCAGAGAAAAGCGGGCTCCCTCTTCGTGCCCTTCGTaGCGAGTCACCATCCATGCT +
Preference number: 5 (lower is better)
Translates to: TRCWAHQQYAKGREKRAPSSCPS*RVTIHA
Trigger: AGCATGGATGGTGACTCGCAACGAAGGGCACGAAGA...GGGAGCCCGCTTTTCTCTGCCCTTAGCATACTGCTGATGTGCCCAACACCTAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR CAA 90 bp GGTGCTACAAACACAGAATCATGTCCCTTCAGATACCTGGGGGCTGTTGTATCTTTCAGGCCCTGTGCCTaGGGCATGGGCAGCGGGTGT +
Preference number: 5 (lower is better)
Translates to: GATNTESCPFRYLGAVVSFRPCA*GMGSGC
Trigger: ACACCCGCTGCCCATGCCCAAGGCACAGGGCCTGAA...AGATACAACAGCCCCCAGGTATCTGAAGGGACATGATTCTGTGTTTGTAGCACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
CDS-3UTR CAA 90 bp AAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCTTCAGGCCCTGTGCCTaGGGCATGGGCAGCGGGTGT +
Preference number: 5 (lower is better)
Translates to: KYMTLPPQKGNTSTASSFFRPCA*GMGSGC
Trigger: ACACCCGCTGCCCATGCCCAAGGCACAGGGCCTGAA...GAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp GCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGGGCTTGTACTGGGGCTaGGCTTTGATGGGTTTCACA +
Preference number: 5 (lower is better)
Translates to: ASPEGKHFHCQLLHGISGGLYWG*ALMGFT
Trigger: TGTGAAACCCATCAAAGCCAAGCCCCAGTACAAGCC...CCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp ACTAGGTGTTGGGCACATCAGCAGTATGCTAAGGGCAGAGAAAAGCGGGCTCCCTTGTCATCTGGGGGCTaGTACTGGGGCTTGGCTTTG +
Preference number: 5 (lower is better)
Translates to: TRCWAHQQYAKGREKRAPLSSGG*YWGLAL
Trigger: CAAAGCCAAGCCCCAGTACAAGCCCCCAGATGACAA...GGGAGCCCGCTTTTCTCTGCCCTTAGCATACTGCTGATGTGCCCAACACCTAGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR CAA 90 bp TATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGCTGCGATCCATGGCCTaGTTGTCCGCTGCACTGGGC +
Preference number: 5 (lower is better)
Translates to: YMTLPPQKGNTSTASSFMLRSMA*LSAALG
Trigger: GCCCAGTGCAGCGGACAACAAGGCCATGGATCGCAG...CATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp GCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGTGTCTTTGGCCTTCCTaGGGGGTTTATGGCTCGTTG +
Preference number: 5 (lower is better)
Translates to: ASPEGKHFHCQLLHGISGCLWPS*GVYGSL
Trigger: CAACGAGCCATAAACCCCCAAGGAAGGCCAAAGACA...CCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp GCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGACCACCTGCTTGTCTTaGGCCTTCCTTGGGGGTTTA +
Preference number: 5 (lower is better)
Translates to: ASPEGKHFHCQLLHGISGTTCLS*AFLGGL
Trigger: TAAACCCCCAAGGAAGGCCAAAGACAAGCAGGTGGT...CCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp ACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTGCATCACTGGTGGGTTaGACCCGGCTCTCTTTCGCC +
Preference number: 5 (lower is better)
Translates to: TLPPQKGNTSTASSFMAFASLVG*TRLSFA
Trigger: GGCGAAAGAGAGCCGGGTCAAACCCACCAGTGATGC...AAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp CTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGCATGGCACCACAGGGCCTaGATCCTTCAAAGGCTCTTG +
Preference number: 5 (lower is better)
Translates to: LPRRETLPLPAPSWHFRAWHHRA*ILQRLL
Trigger: CAAGAGCCTTTGAAGGATCAAGGCCCTGTGGTGCCA...TGCCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp CTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGCACAGGGCTTTGATTCTTaGGAGGCTCTGGGAGCATGG +
Preference number: 5 (lower is better)
Translates to: LPRRETLPLPAPSWHFRAQGFDS*EALGAW
Trigger: CCATGCTCCCAGAGCCTCCAAAGAATCAAAGCCCTG...TGCCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS GCA 90 bp CGGCTCTCTTTCGCCTCAGCCAGTTTATTGTTCATCTCTTTGCTTTaGTCCTTGTCGTCGGGTTTGGTAGCACTGGGGCCCTCTGTGGTC +
Preference number: 5 (lower is better)
Translates to: RLSFASASLLFISLL*SLSSGLVALGPSVV
Trigger: GACCACAGAGGGCCCCAGTGCTACCAAACCCGACGACAAGGAGCAAAGCAAAGAGATGAACAATAAACTGGCTGAGGCGAAAGAGAGCCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp ATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCAGGCCCTGTGCCTaGGGCATGGGCAGCGGGTGT +
Preference number: 5 (lower is better)
Translates to: IKYMTLPPQKGNTSTASSFRPCA*GMGSGC
Trigger: ACACCCGCTGCCCATGCCCAAGGCACAGGGCCTGAA...GGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp GCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGATGGGTTTCACAGGCTaGATGTCAGTCCATGCTCTG +
Preference number: 5 (lower is better)
Translates to: ASPEGKHFHCQLLHGISGMGFTG*MSVHAL
Trigger: CAGAGCATGGACTGACATCAAGCCTGTGAAACCCAT...CCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp TGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGTACTGGGGCTTGGCTTaGATGGGTTTCACAGGCTTG +
Preference number: 5 (lower is better)
Translates to: CLPRRETLPLPAPSWHFRYWGLA*MGFTGL
Trigger: CAAGCCTGTGAAACCCATCAAAGCCAAGCCCCAGTA...CCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp TGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGGCTTGTACTGGGGCTaGGCTTTGATGGGTTTCACA +
Preference number: 5 (lower is better)
Translates to: CLPRRETLPLPAPSWHFRGLYWG*ALMGFT
Trigger: TGTGAAACCCATCAAAGCCAAGCCCCAGTACAAGCC...CCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp ATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTGTCATCTGGGGGCTaGTACTGGGGCTTGGCTTTG +
Preference number: 5 (lower is better)
Translates to: MTLPPQKGNTSTASSFMALSSGG*YWGLAL
Trigger: CAAAGCCAAGCCCCAGTACAAGCCCCCAGATGACAA...TGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp TATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATCACTGGTGGGTTaGACCCGGCTCTCTTTCGCC +
Preference number: 5 (lower is better)
Translates to: YMTLPPQKGNTSTASSFMASLVG*TRLSFA
Trigger: GGCGAAAGAGAGCCGGGTCAAACCCACCAGTGATGC...CATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp CTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGCAATGGGACCTTGGTCCTaGGCTAGTGCTGGGATAATG +
Preference number: 5 (lower is better)
Translates to: LPRRETLPLPAPSWHFRAMGPWS*ASAGIM
Trigger: CATTATCCCAGCACTAGCCAAGGACCAAGGTCCCAT...TGCCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp TCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGCAACAGGGCTTTGATTCTTaGGAGGCTCTGGGAGCATGG +
Preference number: 5 (lower is better)
Translates to: SPEGKHFHCQLLHGISGQQGFDS*EALGAW
Trigger: CCATGCTCCCAGAGCCTCCAAAGAATCAAAGCCCTG...TTGCCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp ATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCAAGTGCCTTTGGGACCTaGAGTCTTCAGAGGGTCAGG +
Preference number: 5 (lower is better)
Translates to: MTLPPQKGNTSTASSFMASAFGT*SLQRVR
Trigger: CCTGACCCTCTGAAGACTCAAGGTCCCAAAGGCACT...TGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS GCA 90 bp TTGATCCTTGTGTGGCTCTTTGGTTACAGGACCTCGGTTCTTAGATaGATCACTGGTGGGTTTGACCCGGCTCTCTTTCGCCTCAGCCAG +
Preference number: 5 (lower is better)
Translates to: LILVWLFGYRTSVLR*ITGGFDPALFRLSQ
Trigger: CTGGCTGAGGCGAAAGAGAGCCGGGTCAAACCCACCAGTGATGCATCTAAGAACCGAGGTCCTGTAACCAAAGAGCCACACAAGGATCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp AAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTCCCCAGTGCGCGGCCGGCAGCTaGGCTCGGGCCGCTGCACTT +
Preference number: 5 (lower is better)
Translates to: KTIQHSFMQIKYMTLPPQCAAGS*ARAAAL
Trigger: AAGTGCAGCGGCCCGAGCCAAGCTGCCGGCCGCGCA...CTGGGGAGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000207883.2
CDS-3UTR CAA 90 bp AAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTCCCCAGGCCACCGCGCGCCCCTaGCCTCCTTCAGGCCCTGTG +
Preference number: 5 (lower is better)
Translates to: KTIQHSFMQIKYMTLPPQATARP*PPSGPV
Trigger: CACAGGGCCTGAAGGAGGCAAGGGGCGCGCGGTGGC...CTGGGGAGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp CTAAAAACAAAGGCTTGCCCAGTGCTGATGCATTCATTTTCAAACATGTCTCAAGCCACCGCGCGCCCCTaGCCTCCTTCAGGCCCTGTG +
Preference number: 5 (lower is better)
Translates to: LKTKACPVLMHSFSNMSQATARP*PPSGPV
Trigger: CACAGGGCCTGAAGGAGGCAAGGGGCGCGCGGTGGC...TTGAGACATGTTTGAAAATGAATGCATCAGCACTGGGCAAGCCTTTGTTTTTAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR CAA 90 bp ATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTCCCGGATTTGCCTGTaGAGGGCATCTGCCACCGCG +
Preference number: 5 (lower is better)
Translates to: IKYMTLPPQKGNTSTASSSRICL*RASATA
Trigger: CGCGGTGGCAGATGCCCTCAACAGGCAAATCCGGGA...GGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp CTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCTACTGGGGCTTGGCTTaGATGGGTTTCACAGGCTTG +
Preference number: 5 (lower is better)
Translates to: LCLPRRETLPLPAPSWHFYWGLA*MGFTGL
Trigger: CAAGCCTGTGAAACCCATCAAAGCCAAGCCCCAGTA...GAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp ATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCAGGCTTGTACTGGGGCTaGGCTTTGATGGGTTTCACA +
Preference number: 5 (lower is better)
Translates to: MTLPPQKGNTSTASSFMAGLYWG*ALMGFT
Trigger: TGTGAAACCCATCAAAGCCAAGCCCCAGTACAAGCC...TGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp CTGGGAGCTGGGGCAGAGAACGGGAAGCCGGGCATAGCTTCCAGGAGTTTTGCATCGTTGAGGTCTTTTTaGGTTTGGAACTCTGAACAC +
Preference number: 5 (lower is better)
Translates to: LGAGAENGKPGIASRSFASLRSF*VWNSEH
Trigger: GTGTTCAGAGTTCCAAACCAAAAAAGACCTCAACGA...TGCAAAACTCCTGGAAGCTATGCCCGGCTTCCCGTTCTCTGCCCCAGCTCCCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR CAA 90 bp AAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCTCCTTGTCGTCGGGTTaGGTAGCACTGGGGCCCTCT +
Preference number: 5 (lower is better)
Translates to: KYMTLPPQKGNTSTASSFSLSSG*VALGPS
Trigger: AGAGGGCCCCAGTGCTACCAAACCCGACGACAAGGA...GAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp TGGCCACATGCTCAGCACATTGACCTTTCTGTGGAGCAGAGCAAGAGCTCGGTCTCTTTGCTTTGCTCCTaGTCGTCGGGTTTGGTAGCA +
Preference number: 5 (lower is better)
Translates to: WPHAQHIDLSVEQSKSSVSLLCS*SSGLVA
Trigger: TGCTACCAAACCCGACGACAAGGAGCAAAGCAAAGA...GACCGAGCTCTTGCTCTGCTCCACAGAAAGGTCAATGTGCTGAGCATGTGGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR CAA 90 bp GCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGGTTCATCTCTTTGCTTaGCTCCTTGTCGTCGGGTTT +
Preference number: 5 (lower is better)
Translates to: ASPEGKHFHCQLLHGISGVHLFA*LLVVGF
Trigger: AAACCCGACGACAAGGAGCAAAGCAAAGAGATGAAC...CCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp GGGGACCCTTGGCTAGATGCTGTGCCACCAGTAGTAAGAGTCGGTGGCCTCAGAGCCTCAGCCAGTTTATaGTTCATCTCTTTGCTTTGC +
Preference number: 5 (lower is better)
Translates to: GDPWLDAVPPVVRVGGLRASASL*FISLLC
Trigger: GCAAAGCAAAGAGATGAACAATAAACTGGCTGAGGC...TCTGAGGCCACCGACTCTTACTACTGGTGGCACAGCATCTAGCCAAGGGTCCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR CAA 90 bp ACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTTGGGGCCACAGAGCCTaGATCCTTGTGTGGCTCTTT +
Preference number: 5 (lower is better)
Translates to: TLPPQKGNTSTASSFMAFWGHRA*ILVWLF
Trigger: AAAGAGCCACACAAGGATCAAGGCTCTGTGGCCCCA...AAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp TATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGAGAGGGCTTTGGGCTTaGGCTGGTGCTAAGGGGACA +
Preference number: 5 (lower is better)
Translates to: YMTLPPQKGNTSTASSFMRGLWA*AGAKGT
Trigger: TGTCCCCTTAGCACCAGCCAAAGCCCAAAGCCCTCT...CATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS CCA 90 bp TTTGAACTGGGCGCTGTAGCTGGTCTCATGAACCATCTTGTCATCTaGGGGCTTGTACTGGGGCTTGGCTTTGATGGGTTTCACAGGCTT +
Preference number: 5 (lower is better)
Translates to: FELGAVAGLMNHLVI*GLVLGLGFDGFHRL
Trigger: AAGCCTGTGAAACCCATCAAAGCCAAGCCCCAGTACAAGCCCCCAGATGACAAGATGGTTCATGAGACCAGCTACAGCGCCCAGTTCAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp ATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCCGAAGTCGCAGGGATTaGCACCGGCTTGGGGATCCA +
Preference number: 5 (lower is better)
Translates to: IKYMTLPPQKGNTSTASSRSRRD*HRLGDP
Trigger: TGGATCCCCAAGCCGGTGCAAATCCCTGCGACTTCG...GGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000207883.2
CDS-3UTR CAA 90 bp CAGATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCCGAAGTCGCAGGGATTaGCACCGGCTTGGGGATCCA +
Preference number: 5 (lower is better)
Translates to: QIKYMTLPPQKGNTSTASRSRRD*HRLGDP
Trigger: TGGATCCCCAAGCCGGTGCAAATCCCTGCGACTTCG...GCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAATCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000207883.2
CDS-3UTR CAA 90 bp AGTACGTCAAGAGCTGTTTCTAAGCTTCGAAAGTCAAAGATGCTGGCTAAGCGCCGAAGTCGCAGGGATTaGCACCGGCTTGGGGATCCA +
Preference number: 5 (lower is better)
Translates to: STSRAVSKLRKSKMLAKRRSRRD*HRLGDP
Trigger: TGGATCCCCAAGCCGGTGCAAATCCCTGCGACTTCG...GCGCTTAGCCAGCATCTTTGACTTTCGAAGCTTAGAAACAGCTCTTGACGTACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR CAA 90 bp TGGGCTTTGGCTGGTGCTAAGGGGACAGAATCTTTATTCTTTAAAAGCTCAGATTTCAGGCCCTGTGCCTaGGGCATGGGCAGCGGGTGT +
Preference number: 5 (lower is better)
Translates to: WALAGAKGTESLFFKSSDFRPCA*GMGSGC
Trigger: ACACCCGCTGCCCATGCCCAAGGCACAGGGCCTGAA...ATCTGAGCTTTTAAAGAATAAAGATTCTGTCCCCTTAGCACCAGCCAAAGCCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
CDS-3UTR CAA 90 bp TCCAGCAAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTGCCACCGCGCGCCCCTaGCCTCCTTCAGGCCCTGTG +
Preference number: 5 (lower is better)
Translates to: SSKTIQHSFMQIKYMTLPATARP*PPSGPV
Trigger: CACAGGGCCTGAAGGAGGCAAGGGGCGCGCGGTGGC...AGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTTGCTGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp ATGCAGATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCTCCCGGATTTGCCTGTaGAGGGCATCTGCCACCGCG +
Preference number: 5 (lower is better)
Translates to: MQIKYMTLPPQKGNTSTASRICL*RASATA
Trigger: CGCGGTGGCAGATGCCCTCAACAGGCAAATCCGGGA...GGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAATCTGCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp TCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGCAAATGGGTTTCACAGGCTaGATGTCAGTCCATGCTCTG +
Preference number: 5 (lower is better)
Translates to: SPEGKHFHCQLLHGISGQMGFTG*MSVHAL
Trigger: CAGAGCATGGACTGACATCAAGCCTGTGAAACCCAT...TTGCCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp TTCCAGCTCTCTCGCTCCAGGGTGAACAGAGAACAGAGGGAAATGTACGAAGTGTGTCTTTGGCCTTCCTaGGGGGTTTATGGCTCGTTG +
Preference number: 5 (lower is better)
Translates to: FQLSRSRVNREQREMYEVCLWPS*GVYGSL
Trigger: CAACGAGCCATAAACCCCCAAGGAAGGCCAAAGACA...CACTTCGTACATTTCCCTCTGTTCTCTGTTCACCCTGGAGCGAGAGAGCTGGAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR CAA 90 bp AAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCTCTGTGGTCTTTTTCTaGGCAGCCTGGCCCGACACC +
Preference number: 5 (lower is better)
Translates to: KYMTLPPQKGNTSTASSFSVVFF*AAWPDT
Trigger: GGTGTCGGGCCAGGCTGCCAAGAAAAAGACCACAGA...GAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp ACCTTCCCAAACTGCAGGGACCTGAAGAGACCAAGGAGCCATCAGATCTGCCCTGTTCATCTCTTTGCTTaGCTCCTTGTCGTCGGGTTT +
Preference number: 5 (lower is better)
Translates to: TFPNCRDLKRPRSHQICPVHLFA*LLVVGF
Trigger: AAACCCGACGACAAGGAGCAAAGCAAAGAGATGAAC...AGGGCAGATCTGATGGCTCCTTGGTCTCTTCAGGTCCCTGCAGTTTGGGAAGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR CAA 90 bp TATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGTGGGGCCACAGAGCCTaGATCCTTGTGTGGCTCTTT +
Preference number: 5 (lower is better)
Translates to: YMTLPPQKGNTSTASSFMWGHRA*ILVWLF
Trigger: AAAGAGCCACACAAGGATCAAGGCTCTGTGGCCCCA...CATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp CTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCATCCTTCAAAGGCTCTaGGCCTTTTGGAAGACCTGG +
Preference number: 5 (lower is better)
Translates to: LCLPRRETLPLPAPSWHFILQRL*AFWKTW
Trigger: CCAGGTCTTCCAAAAGGCCAAGAGCCTTTGAAGGAT...GAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp ATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCAATCCTTCAAAGGCTCTaGGCCTTTTGGAAGACCTGG +
Preference number: 5 (lower is better)
Translates to: MTLPPQKGNTSTASSFMAILQRL*AFWKTW
Trigger: CCAGGTCTTCCAAAAGGCCAAGAGCCTTTGAAGGAT...TGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp ATTTGCTTTCTGAGCAGGCACAGACCACGTGACGTCACAATCAATTGGCTATACACCGCAATGTCCGCCTaGTCCAGCTGGTTCCAGAAG +
Preference number: 5 (lower is better)
Translates to: ICFLSRHRPRDVTINWLYTAMSA*SSWFQK
Trigger: CTTCTGGAACCAGCTGGACAAGGCGGACATTGCGGT...GTATAGCCAATTGATTGTGACGTCACGTGGTCTGTGCCTGCTCAGAAAGCAAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR CAA 90 bp AAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCTCTTCGTGCCCTTCGTaGCGAGTCACCATCCATGCT +
Preference number: 5 (lower is better)
Translates to: KYMTLPPQKGNTSTASSFSSCPS*RVTIHA
Trigger: AGCATGGATGGTGACTCGCAACGAAGGGCACGAAGA...GAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp AGGGTGAACAGAGAACAGAGGGAAATGTACGAAGTGAGGAACGGGCTTGGTCACATGGGTTTCACAGGCTaGATGTCAGTCCATGCTCTG +
Preference number: 5 (lower is better)
Translates to: RVNREQREMYEVRNGLGHMGFTG*MSVHAL
Trigger: CAGAGCATGGACTGACATCAAGCCTGTGAAACCCAT...GTGACCAAGCCCGTTCCTCACTTCGTACATTTCCCTCTGTTCTCTGTTCACCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR CAA 90 bp TATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGTACTGGGGCTTGGCTTaGATGGGTTTCACAGGCTTG +
Preference number: 5 (lower is better)
Translates to: YMTLPPQKGNTSTASSFMYWGLA*MGFTGL
Trigger: CAAGCCTGTGAAACCCATCAAAGCCAAGCCCCAGTA...CATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp AAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCTTGTCATCTGGGGGCTaGTACTGGGGCTTGGCTTTG +
Preference number: 5 (lower is better)
Translates to: KYMTLPPQKGNTSTASSFLSSGG*YWGLAL
Trigger: CAAAGCCAAGCCCCAGTACAAGCCCCCAGATGACAA...GAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp TATCGCACCAGGACATTTCTGGTGGATAGTTTGTGTTTCCTCATAAGTCAGGAGCCCGACACCACCTGCTaGTCTTTGGCCTTCCTTGGG +
Preference number: 5 (lower is better)
Translates to: YRTRTFLVDSLCFLISQEPDTTC*SLAFLG
Trigger: CCCAAGGAAGGCCAAAGACAAGCAGGTGGTGTCGGG...CTCCTGACTTATGAGGAAACACAAACTATCCACCAGAAATGTCCTGGTGCGATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR CAA 90 bp ATGCAGATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCCCCGACACCACCTGCTaGTCTTTGGCCTTCCTTGGG +
Preference number: 5 (lower is better)
Translates to: MQIKYMTLPPQKGNTSTAPDTTC*SLAFLG
Trigger: CCCAAGGAAGGCCAAAGACAAGCAGGTGGTGTCGGG...GGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAATCTGCAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp CTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCGTTCATCTCTTTGCTTaGCTCCTTGTCGTCGGGTTT +
Preference number: 5 (lower is better)
Translates to: LCLPRRETLPLPAPSWHFVHLFA*LLVVGF
Trigger: AAACCCGACGACAAGGAGCAAAGCAAAGAGATGAAC...GAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp CTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGGCAGCCTCAGCCAGTTTATaGTTCATCTCTTTGCTTTGC +
Preference number: 5 (lower is better)
Translates to: LPRRETLPLPAPSWHFRAASASL*FISLLC
Trigger: GCAAAGCAAAGAGATGAACAATAAACTGGCTGAGGC...TGCCCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp ATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCAAGGCTCTTGGCCTTTaGGAAGACCTGGGGCCACAG +
Preference number: 5 (lower is better)
Translates to: IKYMTLPPQKGNTSTASSKALGL*EDLGPQ
Trigger: CTGTGGCCCCAGGTCTTCCAAAAGGCCAAGAGCCTT...GGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp ACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTATCCTTCAAAGGCTCTaGGCCTTTTGGAAGACCTGG +
Preference number: 5 (lower is better)
Translates to: TLPPQKGNTSTASSFMAFILQRL*AFWKTW
Trigger: CCAGGTCTTCCAAAAGGCCAAGAGCCTTTGAAGGAT...AAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp CAGATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCAGAGGGCTTTGGGCTTaGGCTGGTGCTAAGGGGACA +
Preference number: 5 (lower is better)
Translates to: QIKYMTLPPQKGNTSTASRGLWA*AGAKGT
Trigger: TGTCCCCTTAGCACCAGCCAAAGCCCAAAGCCCTCT...GCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAATCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp ATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTCTTCGTGCCCTTCGTaGCGAGTCACCATCCATGCT +
Preference number: 5 (lower is better)
Translates to: IKYMTLPPQKGNTSTASSSSCPS*RVTIHA
Trigger: AGCATGGATGGTGACTCGCAACGAAGGGCACGAAGA...GGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp CAGATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCTTCGTGCCCTTCGTaGCGAGTCACCATCCATGCT +
Preference number: 5 (lower is better)
Translates to: QIKYMTLPPQKGNTSTASSSCPS*RVTIHA
Trigger: AGCATGGATGGTGACTCGCAACGAAGGGCACGAAGA...GCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAATCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp GGCATTTCAGGGCAATCAAGGGGATCCCTCAATATATTCCGTATGGGGAACTGTTACTGGGGCTTGGCTTaGATGGGTTTCACAGGCTTG +
Preference number: 5 (lower is better)
Translates to: GISGQSRGSLNIFRMGNCYWGLA*MGFTGL
Trigger: CAAGCCTGTGAAACCCATCAAAGCCAAGCCCCAGTA...ACAGTTCCCCATACGGAATATATTGAGGGATCCCCTTGATTGCCCTGAAATGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
CDS-3UTR CAA 90 bp GGCATTTCAGGGCAATCAAGGGGATCCCTCAATATATTCCGTATGGGGAACTGTGGCTTGTACTGGGGCTaGGCTTTGATGGGTTTCACA +
Preference number: 5 (lower is better)
Translates to: GISGQSRGSLNIFRMGNCGLYWG*ALMGFT
Trigger: TGTGAAACCCATCAAAGCCAAGCCCCAGTACAAGCC...ACAGTTCCCCATACGGAATATATTGAGGGATCCCCTTGATTGCCCTGAAATGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
CDS-3UTR CAA 90 bp CAGATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTTGTCATCTGGGGGCTaGTACTGGGGCTTGGCTTTG +
Preference number: 5 (lower is better)
Translates to: QIKYMTLPPQKGNTSTASLSSGG*YWGLAL
Trigger: CAAAGCCAAGCCCCAGTACAAGCCCCCAGATGACAA...GCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAATCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp TGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGTCGTTGAGGTCTTTTTaGGTTTGGAACTCTGAACAC +
Preference number: 5 (lower is better)
Translates to: CLPRRETLPLPAPSWHFRSLRSF*VWNSEH
Trigger: GTGTTCAGAGTTCCAAACCAAAAAAGACCTCAACGA...CCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp TGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATTTCAGGTTATTGTTCATCTCTTaGCTTTGCTCCTTGTCGTCG +
Preference number: 5 (lower is better)
Translates to: CLPRRETLPLPAPSWHFRLLFIS*LCSLSS
Trigger: CGACGACAAGGAGCAAAGCAAAGAGATGAACAATAA...CCTGAAATGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp ATGCAGATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCTCTTCGTGCCCTTCGTaGCGAGTCACCATCCATGCT +
Preference number: 5 (lower is better)
Translates to: MQIKYMTLPPQKGNTSTASSCPS*RVTIHA
Trigger: AGCATGGATGGTGACTCGCAACGAAGGGCACGAAGA...GGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAATCTGCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp CAGATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCGGCTTGTACTGGGGCTaGGCTTTGATGGGTTTCACA +
Preference number: 5 (lower is better)
Translates to: QIKYMTLPPQKGNTSTASGLYWG*ALMGFT
Trigger: TGTGAAACCCATCAAAGCCAAGCCCCAGTACAAGCC...GCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAATCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp ATGCAGATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCTTGTCATCTGGGGGCTaGTACTGGGGCTTGGCTTTG +
Preference number: 5 (lower is better)
Translates to: MQIKYMTLPPQKGNTSTALSSGG*YWGLAL
Trigger: CAAAGCCAAGCCCCAGTACAAGCCCCCAGATGACAA...GGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAATCTGCAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp TACTGGGATTATAGGGTCTTGATTCTTTATAGGCCCAAGAACCACAGGGCTTTGTTGTCATCTGGGGGCTaGTACTGGGGCTTGGCTTTG +
Preference number: 5 (lower is better)
Translates to: YWDYRVLILYRPKNHRALLSSGG*YWGLAL
Trigger: CAAAGCCAAGCCCCAGTACAAGCCCCCAGATGACAA...CAAAGCCCTGTGGTTCTTGGGCCTATAAAGAATCAAGACCCTATAATCCCAGTA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
CDS-3UTR CAA 90 bp ATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCATCGTTGAGGTCTTTTTaGGTTTGGAACTCTGAACAC +
Preference number: 5 (lower is better)
Translates to: MTLPPQKGNTSTASSFMASLRSF*VWNSEH
Trigger: GTGTTCAGAGTTCCAAACCAAAAAAGACCTCAACGA...TGCCATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp ATGCAGATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCCAGGGCTTTGATTCTTaGGAGGCTCTGGGAGCATGG +
Preference number: 5 (lower is better)
Translates to: MQIKYMTLPPQKGNTSTAQGFDS*EALGAW
Trigger: CCATGCTCCCAGAGCCTCCAAAGAATCAAAGCCCTG...GGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAATCTGCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp ATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCATGGGTTTCACAGGCTaGATGTCAGTCCATGCTCTG +
Preference number: 5 (lower is better)
Translates to: IKYMTLPPQKGNTSTASSMGFTG*MSVHAL
Trigger: CAGAGCATGGACTGACATCAAGCCTGTGAAACCCAT...GGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp CAGATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCATGGGTTTCACAGGCTaGATGTCAGTCCATGCTCTG +
Preference number: 5 (lower is better)
Translates to: QIKYMTLPPQKGNTSTASMGFTG*MSVHAL
Trigger: CAGAGCATGGACTGACATCAAGCCTGTGAAACCCAT...GCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAATCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp TATCGCACCAGGACATTTCTGGTGGATAGTTTGTGTTTCCTCATAAGTCAGGAGTACTGGGGCTTGGCTTaGATGGGTTTCACAGGCTTG +
Preference number: 5 (lower is better)
Translates to: YRTRTFLVDSLCFLISQEYWGLA*MGFTGL
Trigger: CAAGCCTGTGAAACCCATCAAAGCCAAGCCCCAGTA...CTCCTGACTTATGAGGAAACACAAACTATCCACCAGAAATGTCCTGGTGCGATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR CAA 90 bp TACTGGGATTATAGGGTCTTGATTCTTTATAGGCCCAAGAACCACAGGGCTTTGGGCTTGTACTGGGGCTaGGCTTTGATGGGTTTCACA +
Preference number: 5 (lower is better)
Translates to: YWDYRVLILYRPKNHRALGLYWG*ALMGFT
Trigger: TGTGAAACCCATCAAAGCCAAGCCCCAGTACAAGCC...CAAAGCCCTGTGGTTCTTGGGCCTATAAAGAATCAAGACCCTATAATCCCAGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000208605.2
CDS-3UTR CAA 90 bp TCCAGCAAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTCTGCGATCCATGGCCTaGTTGTCCGCTGCACTGGGC +
Preference number: 5 (lower is better)
Translates to: SSKTIQHSFMQIKYMTLPLRSMA*LSAALG
Trigger: GCCCAGTGCAGCGGACAACAAGGCCATGGATCGCAG...AGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTTGCTGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp ATGCAGATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCTGTCTTTGGCCTTCCTaGGGGGTTTATGGCTCGTTG +
Preference number: 5 (lower is better)
Translates to: MQIKYMTLPPQKGNTSTACLWPS*GVYGSL
Trigger: CAACGAGCCATAAACCCCCAAGGAAGGCCAAAGACA...GGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAATCTGCAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp ATGCAGATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCACCACCTGCTTGTCTTaGGCCTTCCTTGGGGGTTTA +
Preference number: 5 (lower is better)
Translates to: MQIKYMTLPPQKGNTSTATTCLS*AFLGGL
Trigger: TAAACCCCCAAGGAAGGCCAAAGACAAGCAGGTGGT...GGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAATCTGCAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp CAGATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCTTTGCTTTGCTCCTaGTCGTCGGGTTTGGTAGCA +
Preference number: 5 (lower is better)
Translates to: QIKYMTLPPQKGNTSTASSLLCS*SSGLVA
Trigger: TGCTACCAAACCCGACGACAAGGAGCAAAGCAAAGA...GCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAATCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp TATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCATGGCCTCAGCCAGTTTATaGTTCATCTCTTTGCTTTGC +
Preference number: 5 (lower is better)
Translates to: YMTLPPQKGNTSTASSFMASASL*FISLLC
Trigger: GCAAAGCAAAGAGATGAACAATAAACTGGCTGAGGC...CATGAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp CAGTTTTGTCCAGTACACTTGAGAGACAGAATAAGACCTGGAGAGCTTTGTTTGGGCTTGTACTGGGGCTaGGCTTTGATGGGTTTCACA +
Preference number: 5 (lower is better)
Translates to: QFCPVHLRDRIRPGELCLGLYWG*ALMGFT
Trigger: TGTGAAACCCATCAAAGCCAAGCCCCAGTACAAGCC...CAAACAAAGCTCTCCAGGTCTTATTCTGTCTCTCAAGTGTACTGGACAAAACTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR CAA 90 bp TCCAGCAAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTTCCTTGTCGTCGGGTTaGGTAGCACTGGGGCCCTCT +
Preference number: 5 (lower is better)
Translates to: SSKTIQHSFMQIKYMTLPSLSSG*VALGPS
Trigger: AGAGGGCCCCAGTGCTACCAAACCCGACGACAAGGA...AGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTTGCTGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp ATGCAGATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCTCTTTGCTTTGCTCCTaGTCGTCGGGTTTGGTAGCA +
Preference number: 5 (lower is better)
Translates to: MQIKYMTLPPQKGNTSTASLLCS*SSGLVA
Trigger: TGCTACCAAACCCGACGACAAGGAGCAAAGCAAAGA...GGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAATCTGCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp ATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCGTTCATCTCTTTGCTTaGCTCCTTGTCGTCGGGTTT +
Preference number: 5 (lower is better)
Translates to: IKYMTLPPQKGNTSTASSVHLFA*LLVVGF
Trigger: AAACCCGACGACAAGGAGCAAAGCAAAGAGATGAAC...GGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp TCCAGCAAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTGCATCACTGGTGGGTTaGACCCGGCTCTCTTTCGCC +
Preference number: 5 (lower is better)
Translates to: SSKTIQHSFMQIKYMTLPASLVG*TRLSFA
Trigger: GGCGAAAGAGAGCCGGGTCAAACCCACCAGTGATGC...AGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTTGCTGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp AGCAAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTCCCAAGGCTCTTGGCCTTTaGGAAGACCTGGGGCCACAG +
Preference number: 5 (lower is better)
Translates to: SKTIQHSFMQIKYMTLPPKALGL*EDLGPQ
Trigger: CTGTGGCCCCAGGTCTTCCAAAAGGCCAAGAGCCTT...GGGAGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp AAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTCCCCAGAAGGCTCTTGGCCTTTaGGAAGACCTGGGGCCACAG +
Preference number: 5 (lower is better)
Translates to: KTIQHSFMQIKYMTLPPQKALGL*EDLGPQ
Trigger: CTGTGGCCCCAGGTCTTCCAAAAGGCCAAGAGCCTT...CTGGGGAGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp TCCAGCAAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTACCGCAATGTCCGCCTaGTCCAGCTGGTTCCAGAAG +
Preference number: 5 (lower is better)
Translates to: SSKTIQHSFMQIKYMTLPTAMSA*SSWFQK
Trigger: CTTCTGGAACCAGCTGGACAAGGCGGACATTGCGGT...AGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTTGCTGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000207883.2
CDS-3UTR CAA 90 bp AAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCTCCTTCTCGTTGAGGTCTTTTTaGGTTTGGAACTCTGAACAC +
Preference number: 5 (lower is better)
Translates to: KYMTLPPQKGNTSTASSFSLRSF*VWNSEH
Trigger: GTGTTCAGAGTTCCAAACCAAAAAAGACCTCAACGA...GAAGGAGCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp CAGATTAAATATATGACTTTGCCTCCCCAGAAGGGAAACACTTCCACTGCCAGCGCCTCAGCCAGTTTATaGTTCATCTCTTTGCTTTGC +
Preference number: 5 (lower is better)
Translates to: QIKYMTLPPQKGNTSTASASASL*FISLLC
Trigger: GCAAAGCAAAGAGATGAACAATAAACTGGCTGAGGC...GCTGGCAGTGGAAGTGTTTCCCTTCTGGGGAGGCAAAGTCATATATTTAATCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp AGCAAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTCCCTGGCACCACAGGGCCTaGATCCTTCAAAGGCTCTTG +
Preference number: 5 (lower is better)
Translates to: SKTIQHSFMQIKYMTLPPWHHRA*ILQRLL
Trigger: CAAGAGCCTTTGAAGGATCAAGGCCCTGTGGTGCCA...GGGAGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTTGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp AGCAAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTCCCAGTGCCTTTGGGACCTaGAGTCTTCAGAGGGTCAGG +
Preference number: 5 (lower is better)
Translates to: SKTIQHSFMQIKYMTLPPSAFGT*SLQRVR
Trigger: CCTGACCCTCTGAAGACTCAAGGTCCCAAAGGCACT...GGGAGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTTGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp TCCAGCAAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTTCTTCGTGCCCTTCGTaGCGAGTCACCATCCATGCT +
Preference number: 5 (lower is better)
Translates to: SSKTIQHSFMQIKYMTLPSSCPS*RVTIHA
Trigger: AGCATGGATGGTGACTCGCAACGAAGGGCACGAAGA...AGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTTGCTGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp TCCAGCAAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTTGGGGCCACAGAGCCTaGATCCTTGTGTGGCTCTTT +
Preference number: 5 (lower is better)
Translates to: SSKTIQHSFMQIKYMTLPWGHRA*ILVWLF
Trigger: AAAGAGCCACACAAGGATCAAGGCTCTGTGGCCCCA...AGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTTGCTGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp TCCAGCAAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTAGTGCCTTTGGGACCTaGAGTCTTCAGAGGGTCAGG +
Preference number: 5 (lower is better)
Translates to: SSKTIQHSFMQIKYMTLPSAFGT*SLQRVR
Trigger: CCTGACCCTCTGAAGACTCAAGGTCCCAAAGGCACT...AGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTTGCTGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp AAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTCCCCAGATGGGTTTCACAGGCTaGATGTCAGTCCATGCTCTG +
Preference number: 5 (lower is better)
Translates to: KTIQHSFMQIKYMTLPPQMGFTG*MSVHAL
Trigger: CAGAGCATGGACTGACATCAAGCCTGTGAAACCCAT...CTGGGGAGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp TCCAGCAAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTTGTCTTTGGCCTTCCTaGGGGGTTTATGGCTCGTTG +
Preference number: 5 (lower is better)
Translates to: SSKTIQHSFMQIKYMTLPCLWPS*GVYGSL
Trigger: CAACGAGCCATAAACCCCCAAGGAAGGCCAAAGACA...AGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTTGCTGGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp TCCAGCAAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTACCACCTGCTTGTCTTaGGCCTTCCTTGGGGGTTTA +
Preference number: 5 (lower is better)
Translates to: SSKTIQHSFMQIKYMTLPTTCLS*AFLGGL
Trigger: TAAACCCCCAAGGAAGGCCAAAGACAAGCAGGTGGT...AGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTTGCTGGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp TCCAGCAAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTATGGGACCTTGGTCCTaGGCTAGTGCTGGGATAATG +
Preference number: 5 (lower is better)
Translates to: SSKTIQHSFMQIKYMTLPMGPWS*ASAGIM
Trigger: CATTATCCCAGCACTAGCCAAGGACCAAGGTCCCAT...AGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTTGCTGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp TCCAGCAAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTATGGGTTTCACAGGCTaGATGTCAGTCCATGCTCTG +
Preference number: 5 (lower is better)
Translates to: SSKTIQHSFMQIKYMTLPMGFTG*MSVHAL
Trigger: CAGAGCATGGACTGACATCAAGCCTGTGAAACCCAT...AGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTTGCTGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS-3UTR CAA 90 bp TCTGCTAAAAACAAAGGCTTGCCCAGTGCTGATGCATTCATTTTCAAACATGTCTTATTGTTCATCTCTTaGCTTTGCTCCTTGTCGTCG +
Preference number: 5 (lower is better)
Translates to: SAKNKGLPSADAFIFKHVLLFIS*LCSLSS
Trigger: CGACGACAAGGAGCAAAGCAAAGAGATGAACAATAA...GACATGTTTGAAAATGAATGCATCAGCACTGGGCAAGCCTTTGTTTTTAGCAGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2
CDS-3UTR CAA 90 bp AGCAAGACTATACAGCACAGTTTCATGCAGATTAAATATATGACTTTGCCTCCCTTATTGTTCATCTCTTaGCTTTGCTCCTTGTCGTCG +
Preference number: 5 (lower is better)
Translates to: SKTIQHSFMQIKYMTLPPLLFIS*LCSLSS
Trigger: CGACGACAAGGAGCAAAGCAAAGAGATGAACAATAA...GGGAGGCAAAGTCATATATTTAATCTGCATGAAACTGTGCTGTATAGTCTTGCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS CCA 72 bp TCCGGCCGGGGGCGGCTACAGTCTCGCGGTCGACGCTaGGCCCGGGCGCAGGCCCTGTTGCCCGGGCAACTG +
Preference number: 6 (lower is better)
Translates to: SGRGRLQSRGRR*ARAQALLPGQL
Trigger: CAGTTGCCCGGGCAACAGGGCCTGCGCCCGGGCCCAGCGTCGACCGCGAGACTGTAGCCGCCCCCGGCCGGA
78% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
CDS GCA 72 bp CTCGCGGTCGACGCTGGGCCCGGGCGCAGGCCCTGTTaGCCGGGCAACTGCATCCGACTCTCCCTGGGCTGG +
Preference number: 6 (lower is better)
Translates to: LAVDAGPGRRPC*PGNCIRLSLGW
Trigger: CCAGCCCAGGGAGAGTCGGATGCAGTTGCCCGGGCAACAGGGCCTGCGCCCGGGCCCAGCGTCGACCGCGAG
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
CDS GCA 72 bp CGCGCTCGAAGGGCGCGTCGGACGGCTGGTACTCGCTaGGCGGCCGGCAGCTTGGCTCGGGCCGCTGCACTT +
Preference number: 6 (lower is better)
Translates to: RARRARRTAGTR*AAGSLARAAAL
Trigger: AAGTGCAGCGGCCCGAGCCAAGCTGCCGGCCGCGCAGCGAGTACCAGCCGTCCGACGCGCCCTTCGAGCGCG
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
CDS CCA 72 bp GTCGCATCACCGAGTCCGCGGGGCCTGAGCCGGAAGTaGAGGCTGAGGCCGCGCCCAAGCCCAGCCCGCTCC +
Preference number: 6 (lower is better)
Translates to: VASPSPRGLSRK*RLRPRPSPARS
Trigger: GGAGCGGGCTGGGCTTGGGCGCGGCCTCAGCCTCCACTTCCGGCTCAGGCCCCGCGGACTCGGTGATGCGAC
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
CDS CCA 72 bp CCGCGCCGGGGCAGCGGCCAGGCGCGGAAGTCCTTCTaGTACTGGGTCTCGCGCTCGAAGGGCGCGTCGGAC +
Preference number: 6 (lower is better)
Translates to: PRRGSGQARKSF*YWVSRSKGASD
Trigger: GTCCGACGCGCCCTTCGAGCGCGAGACCCAGTACCAGAAGGACTTCCGCGCCTGGCCGCTGCCCCGGCGCGG
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
CDS CCA 72 bp TACTGGGTCTCGCGCTCGAAGGGCGCGTCGGACGGCTaGTACTCGCTGCGCGGCCGGCAGCTTGGCTCGGGC +
Preference number: 6 (lower is better)
Translates to: YWVSRSKGASDG*YSLRGRQLGSG
Trigger: GCCCGAGCCAAGCTGCCGGCCGCGCAGCGAGTACCAGCCGTCCGACGCGCCCTTCGAGCGCGAGACCCAGTA
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
CDS CCA 72 bp CGGGGCAGCGGCCAGGCGCGGAAGTCCTTCTGGTACTaGGTCTCGCGCTCGAAGGGCGCGTCGGACGGCTGG +
Preference number: 6 (lower is better)
Translates to: RGSGQARKSFWY*VSRSKGASDGW
Trigger: CCAGCCGTCCGACGCGCCCTTCGAGCGCGAGACCCAGTACCAGAAGGACTTCCGCGCCTGGCCGCTGCCCCG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
CDS CCA 72 bp TGCGGGGCCGCCCTCCTGGGTCTGAGACTGGGCGGGTaGCAGCGGCGTCTCCTCGTGCCCTTCCGTGCGAGT +
Preference number: 6 (lower is better)
Translates to: CGAALLGLRLGG*QRRLLVPFRAS
Trigger: ACTCGCACGGAAGGGCACGAGGAGACGCCGCTGCCACCCGCCCAGTCTCAGACCCAGGAGGGCGGCCCCGCA
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS CAA 90 bp CGAAGGGCGCGTCGGACGGCTGGTACTCGCTGCGCGGCCGGCAGCTaGGCTCGGGCCGCTGCACTTTCCAGGCGCGGTAGTCCTGTCGCA +
Preference number: 6 (lower is better)
Translates to: RRARRTAGTRCAAGS*ARAAALSRRGSPVA
Trigger: TGCGACAGGACTACCGCGCCTGGAAAGTGCAGCGGCCCGAGCCAAGCTGCCGGCCGCGCAGCGAGTACCAGCCGTCCGACGCGCCCTTCG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
CDS GCA 72 bp GGGCGGGTGGCAGCGGCGTCTCCTCGTGCCCTTCCGTaGGAGTCACCATCCACGCGGGTCCAGCCTTCCTGC +
Preference number: 6 (lower is better)
Translates to: GRVAAASPRALP*ESPSTRVQPSC
Trigger: GCAGGAAGGCTGGACCCGCGTGGATGGTGACTCGCACGGAAGGGCACGAGGAGACGCCGCTGCCACCCGCCC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS CCA 72 bp GTCGGACGGCTGGTACTCGCTGCGCGGCCGGCAGCTTaGCTCGGGCCGCTGCACTTTCCAGGCGCGGTAGTC +
Preference number: 6 (lower is better)
Translates to: VGRLVLAARPAA*LGPLHFPGAVV
Trigger: GACTACCGCGCCTGGAAAGTGCAGCGGCCCGAGCCAAGCTGCCGGCCGCGCAGCGAGTACCAGCCGTCCGAC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
CDS CAA 72 bp CGTCGGACGGCTGGTACTCGCTGCGCGGCCGGCAGCTaGGCTCGGGCCGCTGCACTTTCCAGGCGCGGTAGT +
Preference number: 6 (lower is better)
Translates to: RRTAGTRCAAGS*ARAAALSRRGS
Trigger: ACTACCGCGCCTGGAAAGTGCAGCGGCCCGAGCCAAGCTGCCGGCCGCGCAGCGAGTACCAGCCGTCCGACG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
CDS GCA 72 bp ACGTGTGTCGCGCTGGTCTACACCGGACGCCTTTCCTaGCGCCAGCACCCCGGCTCCTCCAGCACCCTCCGG +
Preference number: 6 (lower is better)
Translates to: TCVALVYTGRLS*RQHPGSSSTLR
Trigger: CCGGAGGGTGCTGGAGGAGCCGGGGTGCTGGCGGCAGGAAAGGCGTCCGGTGTAGACCAGCGCGACACACGT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS GCA 72 bp CGTGTCGCGCTCGTCTGCACCAGATGCCTTTCCAGCTaGGGGGCCGCCCTCCTGGGTCTGAGACTGGGCGGG +
Preference number: 6 (lower is better)
Translates to: RVALVCTRCLSS*GAALLGLRLGG
Trigger: CCCGCCCAGTCTCAGACCCAGGAGGGCGGCCCCGCAGCTGGAAAGGCATCTGGTGCAGACGAGCGCGACACG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS GCA 72 bp CTGCCACCGCGCGCCCCTTGCCTCCTTCAGGCCCTGTaGCTTGGGCATGGGCAGCGGGTGTCTGTTCGTGCC +
Preference number: 6 (lower is better)
Translates to: LPPRAPCLLQAL*LGHGQRVSVRA
Trigger: GGCACGAACAGACACCCGCTGCCCATGCCCAAGGCACAGGGCCTGAAGGAGGCAAGGGGCGCGCGGTGGCAG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS CCA 72 bp GGGAAGGCTGCGAAGTCGCAGGGATTTGCACCGGCTTaGGGATCCAGGGATGGTCCCCGCGCCGGGGCAGCG +
Preference number: 6 (lower is better)
Translates to: GKAAKSQGFAPA*GSRDGPRAGAA
Trigger: CGCTGCCCCGGCGCGGGGACCATCCCTGGATCCCCAAGCCGGTGCAAATCCCTGCGACTTCGCAGCCTTCCC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
CDS CCA 72 bp ACCGCGCGCCCCTTGCCTCCTTCAGGCCCTGTGCCTTaGGCATGGGCAGCGGGTGTCTGTTCGTGCCCCTCC +
Preference number: 6 (lower is better)
Translates to: TARPLPPSGPVP*AWAAGVCSCPS
Trigger: GGAGGGGCACGAACAGACACCCGCTGCCCATGCCCAAGGCACAGGGCCTGAAGGAGGCAAGGGGCGCGCGGT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS CAA 72 bp CACCGCGCGCCCCTTGCCTCCTTCAGGCCCTGTGCCTaGGGCATGGGCAGCGGGTGTCTGTTCGTGCCCCTC +
Preference number: 6 (lower is better)
Translates to: HRAPLASFRPCA*GMGSGCLFVPL
Trigger: GAGGGGCACGAACAGACACCCGCTGCCCATGCCCAAGGCACAGGGCCTGAAGGAGGCAAGGGGCGCGCGGTG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS CAA 90 bp CCCGGCTCCTCCAGCACCCTCCGGGTCCCGGGCATCAGCAGAAAGTaGCATGGGCCCGCGCTCTTGGCTCTGAGGCCGACGCTTGGGCAC +
Preference number: 6 (lower is better)
Translates to: PGSSSTLRVPGISRK*HGPALLALRPTLGH
Trigger: GTGCCCAAGCGTCGGCCTCAGAGCCAAGAGCGCGGGCCCATGCAACTTTCTGCTGATGCCCGGGACCCGGAGGGTGCTGGAGGAGCCGGG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
CDS GCA 72 bp CGCCTTCCTCCTCGTGTCGCGCTCGTCTGCACCAGATaGCTTTCCAGCTGCGGGGCCGCCCTCCTGGGTCTG +
Preference number: 6 (lower is better)
Translates to: RLPPRVALVCTR*LSSCGAALLGL
Trigger: CAGACCCAGGAGGGCGGCCCCGCAGCTGGAAAGGCATCTGGTGCAGACGAGCGCGACACGAGGAGGAAGGCG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS CCA 72 bp CGCCCCTTGCCTCCTTCAGGCCCTGTGCCTTGGGCATaGGCAGCGGGTGTCTGTTCGTGCCCCTCCGAGCGA +
Preference number: 6 (lower is better)
Translates to: RPLPPSGPVPWA*AAGVCSCPSER
Trigger: TCGCTCGGAGGGGCACGAACAGACACCCGCTGCCCATGCCCAAGGCACAGGGCCTGAAGGAGGCAAGGGGCG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS CAA 90 bp GGCGGCTGCGGAGGGGCGCCTGGGTGTTCGGTGGCCTCCGAGTACTaGGTGAAAACCAGCGGCACCGCAATGTCCGCCTTGTCCAGCTGG +
Preference number: 6 (lower is better)
Translates to: GGCGGAPGCSVASEY*VKTSGTAMSALSSW
Trigger: CCAGCTGGACAAGGCGGACATTGCGGTGCCGCTGGTTTTCACCAAGTACTCGGAGGCCACCGAACACCCAGGCGCCCCTCCGCAGCCGCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
CDS CCA 72 bp GGCCCTGTTGCCCGGGCAACTGCATCCGACTCTCCCTaGGCTGGCTGCGTCTCTATGGCGACAGCACGCGAG +
Preference number: 6 (lower is better)
Translates to: GPVARATASDSP*AGCVSMATARE
Trigger: CTCGCGTGCTGTCGCCATAGAGACGCAGCCAGCCCAGGGAGAGTCGGATGCAGTTGCCCGGGCAACAGGGCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
CDS CAA 72 bp TCCAGCACCCTCCGGGTCCCGGGCATCAGCAGAAAGTaGCATGGGCCCGCGCTCTTGGCTCTGAGGCCGACG +
Preference number: 6 (lower is better)
Translates to: SSTLRVPGISRK*HGPALLALRPT
Trigger: CGTCGGCCTCAGAGCCAAGAGCGCGGGCCCATGCAACTTTCTGCTGATGCCCGGGACCCGGAGGGTGCTGGA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
CDS GCA 72 bp GGGCTGGGGGCAGAGGCTTCTCTTCGTGCCCTTCGCTaGGAGTCACCATCCATGCTGGCCCTGCCTTCCTGC +
Preference number: 6 (lower is better)
Translates to: GLGAEASLRALR*ESPSMLALPSC
Trigger: GCAGGAAGGCAGGGCCAGCATGGATGGTGACTCGCAGCGAAGGGCACGAAGAGAAGCCTCTGCCCCCAGCCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS CAA 72 bp CCGGGCATCAGCAGAAAGTTGCATGGGCCCGCGCTCTaGGCTCTGAGGCCGACGCTTGGGCACCCCGAGAAC +
Preference number: 6 (lower is better)
Translates to: PGISRKLHGPAL*ALRPTLGHPEN
Trigger: GTTCTCGGGGTGCCCAAGCGTCGGCCTCAGAGCCAAGAGCGCGGGCCCATGCAACTTTCTGCTGATGCCCGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
CDS GCA 72 bp CCGTGCGAGTCACCATCCACGCGGGTCCAGCCTTCCTaGGTGTGTCACGCTGATCTGCACCGGACGCCTTTC +
Preference number: 6 (lower is better)
Translates to: PCESPSTRVQPS*VCHADLHRTPF
Trigger: GAAAGGCGTCCGGTGCAGATCAGCGTGACACACGCAGGAAGGCTGGACCCGCGTGGATGGTGACTCGCACGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS CCA 72 bp ATCCATGCTGGCCCTGCCTTCCTACGTGTGTCGCGCTaGTCTACACCGGACGCCTTTCCTGCCGCCAGCACC +
Preference number: 6 (lower is better)
Translates to: IHAGPAFLRVSR*STPDAFPAAST
Trigger: GGTGCTGGCGGCAGGAAAGGCGTCCGGTGTAGACCAGCGCGACACACGTAGGAAGGCAGGGCCAGCATGGAT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS CAA 72 bp GGAGGGGCGCCTGGGTGTTCGGTGGCCTCCGAGTACTaGGTGAAAACCAGCGGCACCGCAATGTCCGCCTTG +
Preference number: 6 (lower is better)
Translates to: GGAPGCSVASEY*VKTSGTAMSAL
Trigger: CAAGGCGGACATTGCGGTGCCGCTGGTTTTCACCAAGTACTCGGAGGCCACCGAACACCCAGGCGCCCCTCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
CDS CAA 90 bp GCGCTCTTGGCTCTGAGGCCGACGCTTGGGCACCCCGAGAACAGGTaGGGAAGGCTGCGAAGTCGCAGGGATTTGCACCGGCTTGGGGAT +
Preference number: 6 (lower is better)
Translates to: ALLALRPTLGHPENR*GRLRSRRDLHRLGD
Trigger: ATCCCCAAGCCGGTGCAAATCCCTGCGACTTCGCAGCCTTCCCAACCTGTTCTCGGGGTGCCCAAGCGTCGGCCTCAGAGCCAAGAGCGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
CDS TCA 72 bp GGGCGCCTGGGTGTTCGGTGGCCTCCGAGTACTTGGTaGAAACCAGCGGCACCGCAATGTCCGCCTTGTCCA +
Preference number: 6 (lower is better)
Translates to: GRLGVRWPPSTW*KPAAPQCPPCP
Trigger: TGGACAAGGCGGACATTGCGGTGCCGCTGGTTTTCACCAAGTACTCGGAGGCCACCGAACACCCAGGCGCCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
CDS GCA 72 bp AGAACAGGTTGGGAAGGCTGCGAAGTCGCAGGGATTTaGACCGGCTTGGGGATCCAGGGATGGTCCCCGCGC +
Preference number: 6 (lower is better)
Translates to: RTGWEGCEVAGI*TGLGIQGWSPR
Trigger: GCGCGGGGACCATCCCTGGATCCCCAAGCCGGTGCAAATCCCTGCGACTTCGCAGCCTTCCCAACCTGTTCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
CDS GCA 72 bp CGACGCTTGGGCACCCCGAGAACAGGTTGGGAAGGCTaGGAAGTCGCAGGGATTTGCACCGGCTTGGGGATC +
Preference number: 6 (lower is better)
Translates to: RRLGTPRTGWEG*EVAGICTGLGI
Trigger: GATCCCCAAGCCGGTGCAAATCCCTGCGACTTCGCAGCCTTCCCAACCTGTTCTCGGGGTGCCCAAGCGTCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
CDS GCA 72 bp CGCTGCGAGTCACCATCCATGCTGGCCCTGCCTTCCTaGGTGTGTCACGCTGATCTGCACCGGACGCCTTTC +
Preference number: 6 (lower is better)
Translates to: RCESPSMLALPS*VCHADLHRTPF
Trigger: GAAAGGCGTCCGGTGCAGATCAGCGTGACACACGCAGGAAGGCAGGGCCAGCATGGATGGTGACTCGCAGCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS GCA 72 bp GTCTGGGATTGGGCTGGGGGCAGAGGCTTCTCTTCGTaGCCTTCGCTGCGAGTCACCATCCATGCTGGCCCT +
Preference number: 6 (lower is better)
Translates to: VWDWAGGRGFSS*PSLRVTIHAGP
Trigger: AGGGCCAGCATGGATGGTGACTCGCAGCGAAGGGCACGAAGAGAAGCCTCTGCCCCCAGCCCAATCCCAGAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS GCA 72 bp GAGCTGCTTACTGTACTCGCCACCTCCTCCCGGATTTaGCTGTTGAGGGCATCTGCCACCGCGCGCCCCTTG +
Preference number: 6 (lower is better)
Translates to: ELLTVLATSSRI*LLRASATARPL
Trigger: CAAGGGGCGCGCGGTGGCAGATGCCCTCAACAGGCAAATCCGGGAGGAGGTGGCGAGTACAGTAAGCAGCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS CAA 72 bp GAGAACAGGTTGGGAAGGCTGCGAAGTCGCAGGGATTaGCACCGGCTTGGGGATCCAGGGATGGTCCCCGCG +
Preference number: 6 (lower is better)
Translates to: ENRLGRLRSRRD*HRLGDPGMVPA
Trigger: CGCGGGGACCATCCCTGGATCCCCAAGCCGGTGCAAATCCCTGCGACTTCGCAGCCTTCCCAACCTGTTCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000068973.11
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
CDS CAA 90 bp GTCTGGGATTGGGCTGGGGGCAGAGGCTTCTCTTCGTGCCCTTCGTaGCGAGTCACCATCCATGCTGGCCCTGCCTTCCTACGTGTGTCG +
Preference number: 6 (lower is better)
Translates to: VWDWAGGRGFSSCPS*RVTIHAGPAFLRVS
Trigger: CGACACACGTAGGAAGGCAGGGCCAGCATGGATGGTGACTCGCAACGAAGGGCACGAAGAGAAGCCTCTGCCCCCAGCCCAATCCCAGAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS TCA 72 bp TTACTGTACTCGCCACCTCCTCCCGGATTTGCCTGTTaGGGGCATCTGCCACCGCGCGCCCCTTGCCTCCTT +
Preference number: 6 (lower is better)
Translates to: LLYSPPPPGFAC*GHLPPRAPCLL
Trigger: AAGGAGGCAAGGGGCGCGCGGTGGCAGATGCCCTCAACAGGCAAATCCGGGAGGAGGTGGCGAGTACAGTAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS GCA 72 bp GTCTGGGATTGGGCTGGGGGCAGAGGCTTCTCTTCGTaGCCTTCGTTGCGAGTCACCATCCATGCTGGCCCT +
Preference number: 6 (lower is better)
Translates to: VWDWAGGRGFSS*PSLRVTIHAGP
Trigger: AGGGCCAGCATGGATGGTGACTCGCAACGAAGGGCACGAAGAGAAGCCTCTGCCCCCAGCCCAATCCCAGAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS CAA 72 bp TGGGCTGGGGGCAGAGGCTTCTCTTCGTGCCCTTCGTaGCGAGTCACCATCCATGCTGGCCCTGCCTTCCTA +
Preference number: 6 (lower is better)
Translates to: WAGGRGFSSCPS*RVTIHAGPAFL
Trigger: TAGGAAGGCAGGGCCAGCATGGATGGTGACTCGCAACGAAGGGCACGAAGAGAAGCCTCTGCCCCCAGCCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS CAA 72 bp AGAGCTGCTTACTGTACTCGCCACCTCCTCCCGGATTaGCCTGTTGAGGGCATCTGCCACCGCGCGCCCCTT +
Preference number: 6 (lower is better)
Translates to: RAAYCTRHLLPD*PVEGICHRAPL
Trigger: AAGGGGCGCGCGGTGGCAGATGCCCTCAACAGGCAAATCCGGGAGGAGGTGGCGAGTACAGTAAGCAGCTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS GCA 72 bp CTTCTCTTCGTGCCCTTCGTTGCGAGTCACCATCCATaGTGGCCCTGCCTTCCTACGTGTGTCGCGCTGGTC +
Preference number: 6 (lower is better)
Translates to: LLFVPFVASHHP*WPCLPTCVALV
Trigger: GACCAGCGCGACACACGTAGGAAGGCAGGGCCAGCATGGATGGTGACTCGCAACGAAGGGCACGAAGAGAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS CCA 72 bp CTCTTCGTGCCCTTCGTTGCGAGTCACCATCCATGCTaGCCCTGCCTTCCTACGTGTGTCGCGCTGGTCTAC +
Preference number: 6 (lower is better)
Translates to: LFVPFVASHHPC*PCLPTCVALVY
Trigger: GTAGACCAGCGCGACACACGTAGGAAGGCAGGGCCAGCATGGATGGTGACTCGCAACGAAGGGCACGAAGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS CAA 90 bp ATTCCTGTAAGAGCTGCTTACTGTACTCGCCACCTCCTCCCGGATTaGCCTGTTGAGGGCATCTGCCACCGCGCGCCCCTTGCCTCCTTC +
Preference number: 6 (lower is better)
Translates to: IPVRAAYCTRHLLPD*PVEGICHRAPLASF
Trigger: GAAGGAGGCAAGGGGCGCGCGGTGGCAGATGCCCTCAACAGGCAAATCCGGGAGGAGGTGGCGAGTACAGTAAGCAGCTCTTACAGGAAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS CAA 72 bp TTCTTGGCAGCCTGGCCCGACACCACCTGCTTGTCTTaGGCCTTCCTTGGGGGTTTATGGCTCGTTGAGGTC +
Preference number: 6 (lower is better)
Translates to: FLAAWPDTTCLS*AFLGGLWLVEV
Trigger: GACCTCAACGAGCCATAAACCCCCAAGGAAGGCCAAAGACAAGCAGGTGGTGTCGGGCCAGGCTGCCAAGAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000068973.11
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS CAA 72 bp GGTTTGGTAGCACTGGGGCCCTCTGTGGTCTTTTTCTaGGCAGCCTGGCCCGACACCACCTGCTTGTCTTTG +
Preference number: 6 (lower is better)
Translates to: GLVALGPSVVFF*AAWPDTTCLSL
Trigger: CAAAGACAAGCAGGTGGTGTCGGGCCAGGCTGCCAAGAAAAAGACCACAGAGGGCCCCAGTGCTACCAAACC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000068973.11
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS GCA 72 bp CCGTATTCTTCTGCGATCCATGGCCTTGTTGTCCGCTaGACTGGGCTTATTGGCCTCCCCTTTGAACTGGGC +
Preference number: 6 (lower is better)
Translates to: PYSSAIHGLVVR*TGLIGLPFELG
Trigger: GCCCAGTTCAAAGGGGAGGCCAATAAGCCCAGTGCAGCGGACAACAAGGCCATGGATCGCAGAAGAATACGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS GCA 72 bp GTGGTCTTTTTCTTGGCAGCCTGGCCCGACACCACCTaGTTGTCTTTGGCCTTCCTTGGGGGTTTATGGCTC +
Preference number: 6 (lower is better)
Translates to: VVFFLAAWPDTT*LSLAFLGGLWL
Trigger: GAGCCATAAACCCCCAAGGAAGGCCAAAGACAAGCAGGTGGTGTCGGGCCAGGCTGCCAAGAAAAAGACCAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000068973.11
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS CAA 90 bp CCCTCTGTGGTCTTTTTCTTGGCAGCCTGGCCCGACACCACCTGCTaGTCTTTGGCCTTCCTTGGGGGTTTATGGCTCGTTGAGGTCTTT +
Preference number: 6 (lower is better)
Translates to: PSVVFFLAAWPDTTC*SLAFLGGLWLVEVF
Trigger: AAAGACCTCAACGAGCCATAAACCCCCAAGGAAGGCCAAAGACAAGCAGGTGGTGTCGGGCCAGGCTGCCAAGAAAAAGACCACAGAGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000068973.11
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS TCA 72 bp TGTTGTCCGCTGCACTGGGCTTATTGGCCTCCCCTTTaGACTGGGCGCTGTAGCTGGTCTCATGAACCATCT +
Preference number: 6 (lower is better)
Translates to: CCPLHWAYWPPL*TGRCSWSHEPS
Trigger: AGATGGTTCATGAGACCAGCTACAGCGCCCAGTTCAAAGGGGAGGCCAATAAGCCCAGTGCAGCGGACAACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS CAA 72 bp GTCTTTTTCTTGGCAGCCTGGCCCGACACCACCTGCTaGTCTTTGGCCTTCCTTGGGGGTTTATGGCTCGTT +
Preference number: 6 (lower is better)
Translates to: VFFLAAWPDTTC*SLAFLGGLWLV
Trigger: AACGAGCCATAAACCCCCAAGGAAGGCCAAAGACAAGCAGGTGGTGTCGGGCCAGGCTGCCAAGAAAAAGAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000068973.11
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS CAA 90 bp CCGGCTCTCTTTCGCCTCAGCCAGTTTATTGTTCATCTCTTTGCTTaGCTCCTTGTCGTCGGGTTTGGTAGCACTGGGGCCCTCTGTGGT +
Preference number: 6 (lower is better)
Translates to: PALFRLSQFIVHLFA*LLVVGFGSTGALCG
Trigger: ACCACAGAGGGCCCCAGTGCTACCAAACCCGACGACAAGGAGCAAAGCAAAGAGATGAACAATAAACTGGCTGAGGCGAAAGAGAGCCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS CCA 72 bp GGCGCTGTAGCTGGTCTCATGAACCATCTTGTCATCTaGGGGCTTGTACTGGGGCTTGGCTTTGATGGGTTT +
Preference number: 6 (lower is better)
Translates to: GAVAGLMNHLVI*GLVLGLGFDGF
Trigger: AAACCCATCAAAGCCAAGCCCCAGTACAAGCCCCCAGATGACAAGATGGTTCATGAGACCAGCTACAGCGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000068973.11
ENSMUST00000107100.3
ENSMUST00000122101.8
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208605.2
ENSMUST00000208924.2
CDS CAA 90 bp TTGACCCGGCTCTCTTTCGCCTCAGCCAGTTTATTGTTCATCTCTTaGCTTTGCTCCTTGTCGTCGGGTTTGGTAGCACTGGGGCCCTCT +
Preference number: 6 (lower is better)
Translates to: LTRLSFASASLLFIS*LCSLSSGLVALGPS
Trigger: AGAGGGCCCCAGTGCTACCAAACCCGACGACAAGGAGCAAAGCAAAGAGATGAACAATAAACTGGCTGAGGCGAAAGAGAGCCGGGTCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS GCA 72 bp TTCGCCTCAGCCAGTTTATTGTTCATCTCTTTGCTTTaGTCCTTGTCGTCGGGTTTGGTAGCACTGGGGCCC +
Preference number: 6 (lower is better)
Translates to: FASASLLFISLL*SLSSGLVALGP
Trigger: GGGCCCCAGTGCTACCAAACCCGACGACAAGGAGCAAAGCAAAGAGATGAACAATAAACTGGCTGAGGCGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068973.11
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS CAA 72 bp ACAGGACCTCGGTTCTTAGATGCATCACTGGTGGGTTaGACCCGGCTCTCTTTCGCCTCAGCCAGTTTATTG +
Preference number: 6 (lower is better)
Translates to: TGPRFLDASLVG*TRLSFASASLL
Trigger: CAATAAACTGGCTGAGGCGAAAGAGAGCCGGGTCAAACCCACCAGTGATGCATCTAAGAACCGAGGTCCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS CAA 90 bp GCCAGTTTATTGTTCATCTCTTTGCTTTGCTCCTTGTCGTCGGGTTaGGTAGCACTGGGGCCCTCTGTGGTCTTTTTCTTGGCAGCCTGG +
Preference number: 6 (lower is better)
Translates to: ASLLFISLLCSLSSG*VALGPSVVFFLAAW
Trigger: CCAGGCTGCCAAGAAAAAGACCACAGAGGGCCCCAGTGCTACCAAACCCGACGACAAGGAGCAAAGCAAAGAGATGAACAATAAACTGGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000068973.11
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS CAA 90 bp TCACTGGTGGGTTTGACCCGGCTCTCTTTCGCCTCAGCCAGTTTATaGTTCATCTCTTTGCTTTGCTCCTTGTCGTCGGGTTTGGTAGCA +
Preference number: 6 (lower is better)
Translates to: SLVGLTRLSFASASL*FISLLCSLSSGLVA
Trigger: TGCTACCAAACCCGACGACAAGGAGCAAAGCAAAGAGATGAACAATAAACTGGCTGAGGCGAAAGAGAGCCGGGTCAAACCCACCAGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS CAA 72 bp TCAGCCAGTTTATTGTTCATCTCTTTGCTTTGCTCCTaGTCGTCGGGTTTGGTAGCACTGGGGCCCTCTGTG +
Preference number: 6 (lower is better)
Translates to: SASLLFISLLCS*SSGLVALGPSV
Trigger: CACAGAGGGCCCCAGTGCTACCAAACCCGACGACAAGGAGCAAAGCAAAGAGATGAACAATAAACTGGCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068973.11
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS CAA 72 bp TTTCGCCTCAGCCAGTTTATTGTTCATCTCTTTGCTTaGCTCCTTGTCGTCGGGTTTGGTAGCACTGGGGCC +
Preference number: 6 (lower is better)
Translates to: FRLSQFIVHLFA*LLVVGFGSTGA
Trigger: GGCCCCAGTGCTACCAAACCCGACGACAAGGAGCAAAGCAAAGAGATGAACAATAAACTGGCTGAGGCGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000068973.11
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS CAA 90 bp TCTTTCGCCTCAGCCAGTTTATTGTTCATCTCTTTGCTTTGCTCCTaGTCGTCGGGTTTGGTAGCACTGGGGCCCTCTGTGGTCTTTTTC +
Preference number: 6 (lower is better)
Translates to: SFASASLLFISLLCS*SSGLVALGPSVVFF
Trigger: GAAAAAGACCACAGAGGGCCCCAGTGCTACCAAACCCGACGACAAGGAGCAAAGCAAAGAGATGAACAATAAACTGGCTGAGGCGAAAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000068973.11
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS CAA 72 bp TTGTTCATCTCTTTGCTTTGCTCCTTGTCGTCGGGTTaGGTAGCACTGGGGCCCTCTGTGGTCTTTTTCTTG +
Preference number: 6 (lower is better)
Translates to: LFISLLCSLSSG*VALGPSVVFFL
Trigger: CAAGAAAAAGACCACAGAGGGCCCCAGTGCTACCAAACCCGACGACAAGGAGCAAAGCAAAGAGATGAACAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000068973.11
ENSMUST00000127492.2
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS CAA 90 bp TCTTTGGTTACAGGACCTCGGTTCTTAGATGCATCACTGGTGGGTTaGACCCGGCTCTCTTTCGCCTCAGCCAGTTTATTGTTCATCTCT +
Preference number: 6 (lower is better)
Translates to: SLVTGPRFLDASLVG*TRLSFASASLLFIS
Trigger: AGAGATGAACAATAAACTGGCTGAGGCGAAAGAGAGCCGGGTCAAACCCACCAGTGATGCATCTAAGAACCGAGGTCCTGTAACCAAAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS CAA 72 bp CTCTCTTTCGCCTCAGCCAGTTTATTGTTCATCTCTTaGCTTTGCTCCTTGTCGTCGGGTTTGGTAGCACTG +
Preference number: 6 (lower is better)
Translates to: LSFASASLLFIS*LCSLSSGLVAL
Trigger: CAGTGCTACCAAACCCGACGACAAGGAGCAAAGCAAAGAGATGAACAATAAACTGGCTGAGGCGAAAGAGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068973.11
ENSMUST00000207883.2
ENSMUST00000208924.2
CDS CAA 72 bp TACTCTTTCGCCTCAGCCAGTTTATTGTTCATCTCTTaGCTTTGCTCCTTGTCGTCGGGTTTGGTAGCACTG +
Preference number: 6 (lower is better)
Translates to: YSFASASLLFIS*LCSLSSGLVAL
Trigger: CAGTGCTACCAAACCCGACGACAAGGAGCAAAGCAAAGAGATGAACAATAAACTGGCTGAGGCGAAAGAGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127492.2