RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MAP3K4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000014426

Ensembl transcript IDs: ENSMUST00000089058.7, ENSMUST00000233002.2, ENSMUST00000233012.2, ENSMUST00000233755.2

Found 413 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TTTCGAACAAGGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTaGAATAAACGTCCCGGACACCCGGGAACACTACATGTTCTTCTG +
Preference number: 1 (lower is better)
Translates to: FRTRRLHSQSQRPGG*NKRPGHPGTLHVLL
Trigger: CAGAAGAACATGTAGTGTTCCCGGGTGTCCGGGACGTTTATTTCAACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCCTTGTTCGAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
3UTR-3UTR CCA 90 bp ACCTTTTCTTCAGCTTCACTTACGAGCCTTTGCATAACAAACCTGCAGCTTTCGAGGGGACAGAGGCGGTaGCCCGTGTACAGTAGTAAT +
Preference number: 2 (lower is better)
Translates to: TFSSASLTSLCITNLQLSRGQRR*PVYSSN
Trigger: ATTACTACTGTACACGGGCCACCGCCTCTGTCCCCT...CGAAAGCTGCAGGTTTGTTATGCAAAGGCTCGTAAGTGAAGCTGAAGAAAAGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
3UTR-3UTR CCA 90 bp AACACTACATGTTCTTCTGAACCCCAGGAGCTCAAAAACACTGTGCTGATGACAAGGGGACAGAGGCGGTaGCCCGTGTACAGTAGTAAT +
Preference number: 2 (lower is better)
Translates to: NTTCSSEPQELKNTVLMTRGQRR*PVYSSN
Trigger: ATTACTACTGTACACGGGCCACCGCCTCTGTCCCCT...TGTCATCAGCACAGTGTTTTTGAGCTCCTGGGGTTCAGAAGAACATGTAGTGTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
3UTR-3UTR CCA 90 bp CTTTTCTTCAGCTTCACTTACGAGCCTTTGCATAACAAACCTGCAGCTTTCGAATGTAGTCTTCAGTCCTaGGAGGTTAGGAAGGCCGCC +
Preference number: 2 (lower is better)
Translates to: LFFSFTYEPLHNKPAAFECSLQS*EVRKAA
Trigger: GGCGGCCTTCCTAACCTCCCAGGACTGAAGACTACA...TTCGAAAGCTGCAGGTTTGTTATGCAAAGGCTCGTAAGTGAAGCTGAAGAAAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
3UTR CCA 72 bp AGAAGTGAGGCTTGTCACCCCTGTAGTCTTCAGTCCTaGGAGGTTAGGAAGGCCGCCTGCGCTGCAGTCTTT +
Preference number: 3 (lower is better)
Translates to: RSEACHPCSLQS*EVRKAACAAVF
Trigger: AAAGACTGCAGCGCAGGCGGCCTTCCTAACCTCCCAGGACTGAAGACTACAGGGGTGACAAGCCTCACTTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
3UTR TCA 72 bp AGGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTaGAATAAACGTCCCGGACACCCGGGAACACTACAT +
Preference number: 3 (lower is better)
Translates to: RRLHSQSQRPGG*NKRPGHPGTLH
Trigger: ATGTAGTGTTCCCGGGTGTCCGGGACGTTTATTTCAACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
3UTR GCA 72 bp AAAAGAACCTTTTCTTCAGCTTCACTTACGAGCCTTTaGATAACAAACCTGCAGCTTTCGAACAAGGAGGCT +
Preference number: 3 (lower is better)
Translates to: KRTFSSASLTSL*ITNLQLSNKEA
Trigger: AGCCTCCTTGTTCGAAAGCTGCAGGTTTGTTATGCAAAGGCTCGTAAGTGAAGCTGAAGAAAAGGTTCTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp AGCACTGTCACTCAGCAGGCGACAGGAGCAGCAGAAGTGAGGCTTGTCACCCCTGCCGCAGCTCCTCCATaGCGGCTGCAGGGGTGTCGG +
Preference number: 4 (lower is better)
Translates to: STVTQQATGAAEVRLVTPAAAPP*RLQGCR
Trigger: CCGACACCCCTGCAGCCGCCATGGAGGAGCTGCGGC...AGGGGTGACAAGCCTCACTTCTGCTGCTCCTGTCGCCTGCTGAGTGACAGTGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp CCTGCAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTGCCGCAGCTCCTCCATaGCGGCTGCAGGGGTGTCGG +
Preference number: 4 (lower is better)
Translates to: PAAFEQGGSTVRANDQEVAAAPP*RLQGCR
Trigger: CCGACACCCCTGCAGCCGCCATGGAGGAGCTGCGGC...AACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGCAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp GGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTGAAATAAACGTCCCGGACAGAGTCACCACCACCTaGGCCAGGGCGGCCAGCAGC +
Preference number: 4 (lower is better)
Translates to: GGSTVRANDQEVEINVPDRVTTT*ARAASS
Trigger: GCTGCTGGCCGCCCTGGCCCAGGTGGTGGTGACTCT...GTCCGGGACGTTTATTTCAACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089058.7
CDS-3UTR TCA 90 bp GGAGGGGACAGAGGCGGTGGCCCGTGTACAGTAGTAATGGCACTTAACGTGCGGCCTCTGGTGCTTGGCTaGCAGGCGTTTCATCTGTCG +
Preference number: 4 (lower is better)
Translates to: GGDRGGGPCTVVMALNVRPLVLG*QAFHLS
Trigger: CGACAGATGAAACGCCTGTCAGCCAAGCACCAGAGG...CCGCACGTTAAGTGCCATTACTACTGTACACGGGCCACCGCCTCTGTCCCCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp GGAGGGGACAGAGGCGGTGGCCCGTGTACAGTAGTAATGGCACTTAACGTGCGGTCATCTGTCGAGGTGTaGTTGGGGGTGAGGTGCCGT +
Preference number: 4 (lower is better)
Translates to: GGDRGGGPCTVVMALNVRSSVEV*LGVRCR
Trigger: ACGGCACCTCACCCCCAAGCACACCTCGACAGATGA...CCGCACGTTAAGTGCCATTACTACTGTACACGGGCCACCGCCTCTGTCCCCTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp TGGCACTTAACGTGCGGCTCCTTTAACCTCAGCACTGTCACTCAGCAGGCGACAGCTGGCCGGCCTCCCTaGGCTGTTCCTCTGGTGCTT +
Preference number: 4 (lower is better)
Translates to: WHLTCGSFNLSTVTQQATAGRPP*AVPLVL
Trigger: AAGCACCAGAGGAACAGCGCAGGGAGGCCGGCCAGC...TGTCGCCTGCTGAGTGACAGTGCTGAGGTTAAAGGAGCCGCACGTTAAGTGCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp GGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTGAAATAAACGTCCCGGACCTTGGGTGGCCCATCTaGGTCTTGTGCCTCTGCCGC +
Preference number: 4 (lower is better)
Translates to: GGSTVRANDQEVEINVPDLGWPI*VLCLCR
Trigger: GCGGCAGAGGCACAAGACCCAGATGGGCCACCCAAG...GTCCGGGACGTTTATTTCAACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp GGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTGAAATAAACGTCCCGGACTCTGCCGCACGTCCGTaGCCTTCTCCTTTGGCTCGG +
Preference number: 4 (lower is better)
Translates to: GGSTVRANDQEVEINVPDSAARP*PSPLAR
Trigger: CCGAGCCAAAGGAGAAGGCCACGGACGTGCGGCAGA...GTCCGGGACGTTTATTTCAACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp GTCGGAGGGGACAGAGGCGGTGGCCCGTGTACAGTAGTAATGGCACTTAACGTGGGTCGAGGAGCTGGCTaGCTGTCCACCGTATCTTCG +
Preference number: 4 (lower is better)
Translates to: VGGDRGGGPCTVVMALNVGRGAG*LSTVSS
Trigger: CGAAGATACGGTGGACAGCCAGCCAGCTCCTCGACC...CACGTTAAGTGCCATTACTACTGTACACGGGCCACCGCCTCTGTCCCCTCCGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR TCA 90 bp AGCACTGTCACTCAGCAGGCGACAGGAGCAGCAGAAGTGAGGCTTGTCACCCCTCCTCTGGTGCTTGGCTaGCAGGCGTTTCATCTGTCG +
Preference number: 4 (lower is better)
Translates to: STVTQQATGAAEVRLVTPPLVLG*QAFHLS
Trigger: CGACAGATGAAACGCCTGTCAGCCAAGCACCAGAGG...AGGGGTGACAAGCCTCACTTCTGCTGCTCCTGTCGCCTGCTGAGTGACAGTGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR TCA 90 bp GGAGGGGACAGAGGCGGTGGCCCGTGTACAGTAGTAATGGCACTTAACGTGCGGGCAGGAAGGCATCCATaGAGACGTCGTCTGGATCCT +
Preference number: 4 (lower is better)
Translates to: GGDRGGGPCTVVMALNVRAGRHP*RRRLDP
Trigger: AGGATCCAGACGACGTCTTCATGGATGCCTTCCTGC...CCGCACGTTAAGTGCCATTACTACTGTACACGGGCCACCGCCTCTGTCCCCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR TCA 90 bp GGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTGAAATAAACGTCCCGGACCTCTTCCGTGGGGCTTaGGTGCCGACTCAGAGACCT +
Preference number: 4 (lower is better)
Translates to: GGSTVRANDQEVEINVPDLFRGA*VPTQRP
Trigger: AGGTCTCTGAGTCGGCACTCAAGCCCCACGGAAGAG...GTCCGGGACGTTTATTTCAACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp GGAGGGGACAGAGGCGGTGGCCCGTGTACAGTAGTAATGGCACTTAACGTGCGGTCTCCTGAGGGGTTCTaGACTGGCCTTCTACCAAGG +
Preference number: 4 (lower is better)
Translates to: GGDRGGGPCTVVMALNVRSPEGF*TGLLPR
Trigger: CCTTGGTAGAAGGCCAGTGCAGAACCCCTCAGGAGA...CCGCACGTTAAGTGCCATTACTACTGTACACGGGCCACCGCCTCTGTCCCCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp AGCACTGTCACTCAGCAGGCGACAGGAGCAGCAGAAGTGAGGCTTGTCACCCCTCCCATCTGGGTCTTGTaGCTCTGCCGCTCTCGCATT +
Preference number: 4 (lower is better)
Translates to: STVTQQATGAAEVRLVTPPIWVL*LCRSRI
Trigger: AATGCGAGAGCGGCAGAGGCACAAGACCCAGATGGG...AGGGGTGACAAGCCTCACTTCTGCTGCTCCTGTCGCCTGCTGAGTGACAGTGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp GGAGGGGACAGAGGCGGTGGCCCGTGTACAGTAGTAATGGCACTTAACGTGCGGTGTCTCGGTGAACGATaGCGTGCTCATGGAGGACGT +
Preference number: 4 (lower is better)
Translates to: GGDRGGGPCTVVMALNVRCLGER*RAHGGR
Trigger: ACGTCCTCCATGAGCACGGCATCGTTCACCGAGACA...CCGCACGTTAAGTGCCATTACTACTGTACACGGGCCACCGCCTCTGTCCCCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp AGCACTGTCACTCAGCAGGCGACAGGAGCAGCAGAAGTGAGGCTTGTCACCCCTTCGAGACGGGCAGCTTaGCATTGCTACAGCCGAGAC +
Preference number: 4 (lower is better)
Translates to: STVTQQATGAAEVRLVTPSRRAA*HCYSRD
Trigger: GTCTCGGCTGTAGCAATGCCAAGCTGCCCGTCTCGA...AGGGGTGACAAGCCTCACTTCTGCTGCTCCTGTCGCCTGCTGAGTGACAGTGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp GGAGGGGACAGAGGCGGTGGCCCGTGTACAGTAGTAATGGCACTTAACGTGCGGTCAAACAATGCCTGCTaGCTTCAGGGCCACAGTCCG +
Preference number: 4 (lower is better)
Translates to: GGDRGGGPCTVVMALNVRSNNAC*LQGHSP
Trigger: CGGACTGTGGCCCTGAAGCCAGCAGGCATTGTTTGA...CCGCACGTTAAGTGCCATTACTACTGTACACGGGCCACCGCCTCTGTCCCCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp CCTGCAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTCGTCTCGCTCTTCCGTaGGGCTTGAGTGCCGACTCA +
Preference number: 4 (lower is better)
Translates to: PAAFEQGGSTVRANDQEVRLALP*GLSADS
Trigger: TGAGTCGGCACTCAAGCCCCACGGAAGAGCGAGACG...AACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGCAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp GGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTGAAATAAACGTCCCGGACGGTCGAGGAGCTGGCTaGCTGTCCACCGTATCTTCG +
Preference number: 4 (lower is better)
Translates to: GGSTVRANDQEVEINVPDGRGAG*LSTVSS
Trigger: CGAAGATACGGTGGACAGCCAGCCAGCTCCTCGACC...GTCCGGGACGTTTATTTCAACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR TCA 90 bp AGCACTGTCACTCAGCAGGCGACAGGAGCAGCAGAAGTGAGGCTTGTCACCCCTGTCGTCTGGATCCTTTaGGCAGTCCTTTCCTGTGGC +
Preference number: 4 (lower is better)
Translates to: STVTQQATGAAEVRLVTPVVWIL*AVLSCG
Trigger: GCCACAGGAAAGGACTGCTCAAAGGATCCAGACGAC...AGGGGTGACAAGCCTCACTTCTGCTGCTCCTGTCGCCTGCTGAGTGACAGTGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR TCA 90 bp GTCGGAGGGGACAGAGGCGGTGGCCCGTGTACAGTAGTAATGGCACTTAACGTGTATCAGGGGCAGTGTTaGCAGGTTTGGCTGGCACAG +
Preference number: 4 (lower is better)
Translates to: VGGDRGGGPCTVVMALNVYQGQC*QVWLAQ
Trigger: CTGTGCCAGCCAAACCTGTCAACACTGCCCCTGATA...CACGTTAAGTGCCATTACTACTGTACACGGGCCACCGCCTCTGTCCCCTCCGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089058.7
CDS-3UTR GCA 90 bp TTTAACCTCAGCACTGTCACTCAGCAGGCGACAGGAGCAGCAGAAGTGAGGCTTATGGTGCGGCCCGCGTaGCAGGCCTGCAGTTCTAAC +
Preference number: 4 (lower is better)
Translates to: FNLSTVTQQATGAAEVRLMVRPA*QACSSN
Trigger: GTTAGAACTGCAGGCCTGGCACGCGGGCCGCACCAT...AAGCCTCACTTCTGCTGCTCCTGTCGCCTGCTGAGTGACAGTGCTGAGGTTAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp GCAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTGAACTCTGGCGCTGGAGGTaGTCGTGGTACGATGAGCAG +
Preference number: 4 (lower is better)
Translates to: AAFEQGGSTVRANDQEVELWRWR*SWYDEQ
Trigger: CTGCTCATCGTACCACGAGCACCTCCAGCGCCAGAG...TTCAACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp GCAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTGAACCTGCGCTGTTCCTCTaGTGCTTGGCTGACAGGCGT +
Preference number: 4 (lower is better)
Translates to: AAFEQGGSTVRANDQEVEPALFL*CLADRR
Trigger: ACGCCTGTCAGCCAAGCACCAGAGGAACAGCGCAGG...TTCAACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp GGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTGAAATAAACGTCCCGGACTCGAGACGGGCAGCTTaGCATTGCTACAGCCGAGAC +
Preference number: 4 (lower is better)
Translates to: GGSTVRANDQEVEINVPDSRRAA*HCYSRD
Trigger: GTCTCGGCTGTAGCAATGCCAAGCTGCCCGTCTCGA...GTCCGGGACGTTTATTTCAACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp CCTGCAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTTCTGCCGTGCAGTTCTaGCTATCGGCATGGGCATCG +
Preference number: 4 (lower is better)
Translates to: PAAFEQGGSTVRANDQEVSAVQF*LSAWAS
Trigger: CGATGCCCATGCCGATAGCCAGAACTGCACGGCAGA...AACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGCAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp AGCACTGTCACTCAGCAGGCGACAGGAGCAGCAGAAGTGAGGCTTGTCACCCCTTGGAGGCTCTTTCCCTaGCTTCGTGGAAGAGCTCCT +
Preference number: 4 (lower is better)
Translates to: STVTQQATGAAEVRLVTPWRLFP*LRGRAP
Trigger: AGGAGCTCTTCCACGAAGCCAGGGAAAGAGCCTCCA...AGGGGTGACAAGCCTCACTTCTGCTGCTCCTGTCGCCTGCTGAGTGACAGTGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp GGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTGAAATAAACGTCCCGGACCAAAGCCCAGGGCCTTaGAGGCTCTTTCCCTGGCTT +
Preference number: 4 (lower is better)
Translates to: GGSTVRANDQEVEINVPDQSPGP*RLFPWL
Trigger: AAGCCAGGGAAAGAGCCTCCAAGGCCCTGGGCTTTG...GTCCGGGACGTTTATTTCAACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp GTCGGAGGGGACAGAGGCGGTGGCCCGTGTACAGTAGTAATGGCACTTAACGTGTGTGACAGGGCTGTGTaGCTTTCCTATGACGTGCCC +
Preference number: 4 (lower is better)
Translates to: VGGDRGGGPCTVVMALNVCDRAV*LSYDVP
Trigger: GGGCACGTCATAGGAAAGCCACACAGCCCTGTCACA...CACGTTAAGTGCCATTACTACTGTACACGGGCCACCGCCTCTGTCCCCTCCGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp AGCACTGTCACTCAGCAGGCGACAGGAGCAGCAGAAGTGAGGCTTGTCACCCCTACGATGCCGTGCTCATaGAGGACGTTGATGGCGACA +
Preference number: 4 (lower is better)
Translates to: STVTQQATGAAEVRLVTPTMPCS*RTLMAT
Trigger: TGTCGCCATCAACGTCCTCCATGAGCACGGCATCGT...AGGGGTGACAAGCCTCACTTCTGCTGCTCCTGTCGCCTGCTGAGTGACAGTGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR TCA 90 bp TGGCACTTAACGTGCGGCTCCTTTAACCTCAGCACTGTCACTCAGCAGGCGACACAGTCACCATCTCTATaGCGACGCACCCCAGACTCC +
Preference number: 4 (lower is better)
Translates to: WHLTCGSFNLSTVTQQATQSPSL*RRTPDS
Trigger: GGAGTCTGGGGTGCGTCGTCATAGAGATGGTGACTG...TGTCGCCTGCTGAGTGACAGTGCTGAGGTTAAAGGAGCCGCACGTTAAGTGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp GGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTGAAATAAACGTCCCGGACTCTCCTGAGGGGTTCTaGACTGGCCTTCTACCAAGG +
Preference number: 4 (lower is better)
Translates to: GGSTVRANDQEVEINVPDSPEGF*TGLLPR
Trigger: CCTTGGTAGAAGGCCAGTGCAGAACCCCTCAGGAGA...GTCCGGGACGTTTATTTCAACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp TTTAACCTCAGCACTGTCACTCAGCAGGCGACAGGAGCAGCAGAAGTGAGGCTTCTCTGGCGCTGGAGGTaGTCGTGGTACGATGAGCAG +
Preference number: 4 (lower is better)
Translates to: FNLSTVTQQATGAAEVRLLWRWR*SWYDEQ
Trigger: CTGCTCATCGTACCACGAGCACCTCCAGCGCCAGAG...AAGCCTCACTTCTGCTGCTCCTGTCGCCTGCTGAGTGACAGTGCTGAGGTTAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp CCTGCAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTCCTGAACTGCAGTTCTaGAGCTATGGAGGCCAAGCG +
Preference number: 4 (lower is better)
Translates to: PAAFEQGGSTVRANDQEVPELQF*SYGGQA
Trigger: CGCTTGGCCTCCATAGCTGCAGAACTGCAGTTCAGG...AACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp GCAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTGAATCTGCCGTGCAGTTCTaGCTATCGGCATGGGCATCG +
Preference number: 4 (lower is better)
Translates to: AAFEQGGSTVRANDQEVESAVQF*LSAWAS
Trigger: CGATGCCCATGCCGATAGCCAGAACTGCACGGCAGA...TTCAACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp TTTAACCTCAGCACTGTCACTCAGCAGGCGACAGGAGCAGCAGAAGTGAGGCTTGAGACCCTCTGGCGCTaGAGGTGCTCGTGGTACGAT +
Preference number: 4 (lower is better)
Translates to: FNLSTVTQQATGAAEVRLETLWR*RCSWYD
Trigger: ATCGTACCACGAGCACCTCCAGCGCCAGAGGGTCTC...AAGCCTCACTTCTGCTGCTCCTGTCGCCTGCTGAGTGACAGTGCTGAGGTTAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp TCTTCTGAACCCCAGGAGCTCAAAAACACTGTGCTGATGACACGGTTGGTTCTCGGACAGCCTGAGCTCTaGCACCCTCGGACTGGGGGT +
Preference number: 4 (lower is better)
Translates to: SSEPQELKNTVLMTRLVLGQPEL*HPRTGG
Trigger: ACCCCCAGTCCGAGGGTGCCAGAGCTCAGGCTGTCC...GAGAACCAACCGTGTCATCAGCACAGTGTTTTTGAGCTCCTGGGGTTCAGAAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp GAGCCTTTGCATAACAAACCTGCAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCTCTCCAGCTTCCTaGAGACGCAGCCCTGGGAGC +
Preference number: 4 (lower is better)
Translates to: EPLHNKPAAFEQGGSTVRASPAS*RRSPGS
Trigger: GCTCCCAGGGCTGCGTCTCCAGGAAGCTGGAGAGGC...TCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGCAGGTTTGTTATGCAAAGGCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp CCTGCAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTGCCCCACATGGGACCTaGAAAGTCAGAGAACTCCAC +
Preference number: 4 (lower is better)
Translates to: PAAFEQGGSTVRANDQEVAPHGT*KVRELH
Trigger: GTGGAGTTCTCTGACTTTCCAGGTCCCATGTGGGGC...AACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp GTCGGAGGGGACAGAGGCGGTGGCCCGTGTACAGTAGTAATGGCACTTAACGTGAATCCGAGCCCCACATaGGACCTGGAAAGTCAGAGA +
Preference number: 4 (lower is better)
Translates to: VGGDRGGGPCTVVMALNVNPSPT*DLESQR
Trigger: TCTCTGACTTTCCAGGTCCCATGTGGGGCTCGGATT...CACGTTAAGTGCCATTACTACTGTACACGGGCCACCGCCTCTGTCCCCTCCGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp CCTGCAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTAGGAAGGCAGGTCCATaGCTCTCAGTTCTTCCCAGG +
Preference number: 4 (lower is better)
Translates to: PAAFEQGGSTVRANDQEVRKAGP*LSVLPR
Trigger: CCTGGGAAGAACTGAGAGCCATGGACCTGCCTTCCT...AACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp GTCGGAGGGGACAGAGGCGGTGGCCCGTGTACAGTAGTAATGGCACTTAACGTGCTTTCCCTGGCTTCGTaGAAGAGCTCCTTGAGTGCT +
Preference number: 4 (lower is better)
Translates to: VGGDRGGGPCTVVMALNVLSLAS*KSSLSA
Trigger: AGCACTCAAGGAGCTCTTCCACGAAGCCAGGGAAAG...CACGTTAAGTGCCATTACTACTGTACACGGGCCACCGCCTCTGTCCCCTCCGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp AGCACTGTCACTCAGCAGGCGACAGGAGCAGCAGAAGTGAGGCTTGTCACCCCTTTGGCGATGATGGGCTaGCTAGATGTCTGCTCATGG +
Preference number: 4 (lower is better)
Translates to: STVTQQATGAAEVRLVTPLAMMG*LDVCSW
Trigger: CCATGAGCAGACATCTAGCCAGCCCATCATCGCCAA...AGGGGTGACAAGCCTCACTTCTGCTGCTCCTGTCGCCTGCTGAGTGACAGTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp CAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTGAAACGGGGGCTGTTCCGATaGATAGCTGTGACAGGGCTG +
Preference number: 4 (lower is better)
Translates to: QLSNKEAPQSEPTTRRLKRGLFR*IAVTGL
Trigger: CAGCCCTGTCACAGCTATCCATCGGAACAGCCCCCG...TTTCAACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp CCTGCAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTTTAGGAGGGTCACTGTaGCATCGGGGCACCTTCACA +
Preference number: 4 (lower is better)
Translates to: PAAFEQGGSTVRANDQEVLGGSL*HRGTFT
Trigger: TGTGAAGGTGCCCCGATGCCACAGTGACCCTCCTAA...AACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp CCTTTGCATAACAAACCTGCAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCGCGTGGTCGAGGAGCTaGCTGGCTGTCCACCGTATC +
Preference number: 4 (lower is better)
Translates to: PLHNKPAAFEQGGSTVRAAWSRS*LAVHRI
Trigger: GATACGGTGGACAGCCAGCCAGCTCCTCGACCACGC...GGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGCAGGTTTGTTATGCAAAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR TCA 90 bp TGGCACTTAACGTGCGGCTCCTTTAACCTCAGCACTGTCACTCAGCAGGCGACATGTCTGATAGGTTCTTaGTGCCCAGCACGGTGCCCA +
Preference number: 4 (lower is better)
Translates to: WHLTCGSFNLSTVTQQATCLIGS*CPARCP
Trigger: TGGGCACCGTGCTGGGCATCAAGAACCTATCAGACA...TGTCGCCTGCTGAGTGACAGTGCTGAGGTTAAAGGAGCCGCACGTTAAGTGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR TCA 90 bp GGAGGGGACAGAGGCGGTGGCCCGTGTACAGTAGTAATGGCACTTAACGTGCGGCTCCTATCTTCTGCCTaGATTCCCCAGACATCAAAC +
Preference number: 4 (lower is better)
Translates to: GGDRGGGPCTVVMALNVRLLSSA*IPQTSN
Trigger: GTTTGATGTCTGGGGAATTCAGGCAGAAGATAGGAG...CCGCACGTTAAGTGCCATTACTACTGTACACGGGCCACCGCCTCTGTCCCCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR TCA 90 bp CAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTGAAAGTCGGGATGATGAGGTaGGGGTTAGGAGGGTCACTG +
Preference number: 4 (lower is better)
Translates to: QLSNKEAPQSEPTTRRLKVGMMR*GLGGSL
Trigger: CAGTGACCCTCCTAACCCTCACCTCATCATCCCGAC...TTTCAACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR TCA 90 bp TTTAACCTCAGCACTGTCACTCAGCAGGCGACAGGAGCAGCAGAAGTGAGGCTTCAGTCACCATCTCTATaGCGACGCACCCCAGACTCC +
Preference number: 4 (lower is better)
Translates to: FNLSTVTQQATGAAEVRLQSPSL*RRTPDS
Trigger: GGAGTCTGGGGTGCGTCGTCATAGAGATGGTGACTG...AAGCCTCACTTCTGCTGCTCCTGTCGCCTGCTGAGTGACAGTGCTGAGGTTAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp ACCTTTTCTTCAGCTTCACTTACGAGCCTTTGCATAACAAACCTGCAGCTTTCGGGGCTGTGGCGGCGGTaGTGGCCGCAGCTCCTCCAT +
Preference number: 4 (lower is better)
Translates to: TFSSASLTSLCITNLQLSGLWRR*WPQLLH
Trigger: ATGGAGGAGCTGCGGCCAGCACCGCCGCCACAGCCC...CGAAAGCTGCAGGTTTGTTATGCAAAGGCTCGTAAGTGAAGCTGAAGAAAAGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp CCTGCAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTAAAAGCTTTCCAGCCTaGGCTTCTCCGCCACGGATA +
Preference number: 4 (lower is better)
Translates to: PAAFEQGGSTVRANDQEVKSFPA*ASPPRI
Trigger: TATCCGTGGCGGAGAAGCGCAGGCTGGAAAGCTTTT...AACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp TGGCACTTAACGTGCGGCTCCTTTAACCTCAGCACTGTCACTCAGCAGGCGACAGGTTGTCCACCTGCATaGTTCTCAGGGTGTCCACAG +
Preference number: 4 (lower is better)
Translates to: WHLTCGSFNLSTVTQQATGCPPA*FSGCPQ
Trigger: CTGTGGACACCCTGAGAAGCATGCAGGTGGACAACC...TGTCGCCTGCTGAGTGACAGTGCTGAGGTTAAAGGAGCCGCACGTTAAGTGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp CAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTGAAATCCGTGGGGCTTGAGTaGCGACTCAGAGACCTGAAC +
Preference number: 4 (lower is better)
Translates to: QLSNKEAPQSEPTTRRLKSVGLE*RLRDLN
Trigger: GTTCAGGTCTCTGAGTCGGCACTCAAGCCCCACGGA...TTTCAACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp GGGAGGTTAGGAAGGCCGCCTGCGCTGCAGTCTTTATGTAAATATTACATACAGGGACAGCCTGAGCTCTaGCACCCTCGGACTGGGGGT +
Preference number: 4 (lower is better)
Translates to: GRLGRPPALQSLCKYYIQGQPEL*HPRTGG
Trigger: ACCCCCAGTCCGAGGGTGCCAGAGCTCAGGCTGTCC...CTGTATGTAATATTTACATAAAGACTGCAGCGCAGGCGGCCTTCCTAACCTCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp CCTGCAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTCTGTCCCCCAGCCTATaGAATCTTCCTCTGACTCGA +
Preference number: 4 (lower is better)
Translates to: PAAFEQGGSTVRANDQEVLSPSL*NLPLTR
Trigger: TCGAGTCAGAGGAAGATTCCATAGGCTGGGGGACAG...AACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGCAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp TGGCACTTAACGTGCGGCTCCTTTAACCTCAGCACTGTCACTCAGCAGGCGACAGCCCCACATGGGACCTaGAAAGTCAGAGAACTCCAC +
Preference number: 4 (lower is better)
Translates to: WHLTCGSFNLSTVTQQATAPHGT*KVRELH
Trigger: GTGGAGTTCTCTGACTTTCCAGGTCCCATGTGGGGC...TGTCGCCTGCTGAGTGACAGTGCTGAGGTTAAAGGAGCCGCACGTTAAGTGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp TTCGAACAAGGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTGAAATAAACCGTTGTCGTCGGCGCTaGTCCACAGCTCAGCACAGC +
Preference number: 4 (lower is better)
Translates to: FEQGGSTVRANDQEVEINRCRRR*STAQHS
Trigger: GCTGTGCTGAGCTGTGGACCAGCGCCGACGACAACG...GTTTATTTCAACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCCTTGTTCGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp TGGCACTTAACGTGCGGCTCCTTTAACCTCAGCACTGTCACTCAGCAGGCGACATGGAGGCTCTTTCCCTaGCTTCGTGGAAGAGCTCCT +
Preference number: 4 (lower is better)
Translates to: WHLTCGSFNLSTVTQQATWRLFP*LRGRAP
Trigger: AGGAGCTCTTCCACGAAGCCAGGGAAAGAGCCTCCA...TGTCGCCTGCTGAGTGACAGTGCTGAGGTTAAAGGAGCCGCACGTTAAGTGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp TTTAACCTCAGCACTGTCACTCAGCAGGCGACAGGAGCAGCAGAAGTGAGGCTTCAAAGCCCAGGGCCTTaGAGGCTCTTTCCCTGGCTT +
Preference number: 4 (lower is better)
Translates to: FNLSTVTQQATGAAEVRLQSPGP*RLFPWL
Trigger: AAGCCAGGGAAAGAGCCTCCAAGGCCCTGGGCTTTG...AAGCCTCACTTCTGCTGCTCCTGTCGCCTGCTGAGTGACAGTGCTGAGGTTAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp CAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTGAAACTCGGTCCCCATGCTTaGTCAGGAGCAGGAAGGCAT +
Preference number: 4 (lower is better)
Translates to: QLSNKEAPQSEPTTRRLKLGPHA*SGAGRH
Trigger: ATGCCTTCCTGCTCCTGACCAAGCATGGGGACCGAG...TTTCAACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp AGTCCTGGGAGGTTAGGAAGGCCGCCTGCGCTGCAGTCTTTATGTAAATATTACCTTGGGTGGCCCATCTaGGTCTTGTGCCTCTGCCGC +
Preference number: 4 (lower is better)
Translates to: SPGRLGRPPALQSLCKYYLGWPI*VLCLCR
Trigger: GCGGCAGAGGCACAAGACCCAGATGGGCCACCCAAG...GTAATATTTACATAAAGACTGCAGCGCAGGCGGCCTTCCTAACCTCCCAGGACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp CCTTTGCATAACAAACCTGCAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCCGGGGGCTGTTCCGATaGATAGCTGTGACAGGGCTG +
Preference number: 4 (lower is better)
Translates to: PLHNKPAAFEQGGSTVRARGLFR*IAVTGL
Trigger: CAGCCCTGTCACAGCTATCCATCGGAACAGCCCCCG...GGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGCAGGTTTGTTATGCAAAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp TGGCACTTAACGTGCGGCTCCTTTAACCTCAGCACTGTCACTCAGCAGGCGACAGTTGACAGGTTTGGCTaGCACAGAGTCACCACCACC +
Preference number: 4 (lower is better)
Translates to: WHLTCGSFNLSTVTQQATVDRFG*HRVTTT
Trigger: GGTGGTGGTGACTCTGTGCCAGCCAAACCTGTCAAC...TGTCGCCTGCTGAGTGACAGTGCTGAGGTTAAAGGAGCCGCACGTTAAGTGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089058.7
CDS-3UTR CCA 90 bp GCAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTGAACGTTTTCAGGGACACTaGAACCCCTGGTATCAGGGG +
Preference number: 4 (lower is better)
Translates to: AAFEQGGSTVRANDQEVERFQGH*NPWYQG
Trigger: CCCCTGATACCAGGGGTTCCAGTGTCCCTGAAAACG...TTCAACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089058.7
CDS-3UTR CCA 90 bp TTTAACCTCAGCACTGTCACTCAGCAGGCGACAGGAGCAGCAGAAGTGAGGCTTCCTTTCCGGGATTGGTaGCTTGTGTCCCATCCCCAC +
Preference number: 4 (lower is better)
Translates to: FNLSTVTQQATGAAEVRLPFRDW*LVSHPH
Trigger: GTGGGGATGGGACACAAGCCACCAATCCCGGAAAGG...AAGCCTCACTTCTGCTGCTCCTGTCGCCTGCTGAGTGACAGTGCTGAGGTTAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR TCA 90 bp GCAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTGAAGGTGAGCAGACTCCATaGCAACCAGCAGAAGGTTGT +
Preference number: 4 (lower is better)
Translates to: AAFEQGGSTVRANDQEVEGEQTP*QPAEGC
Trigger: ACAACCTTCTGCTGGTTGTCATGGAGTCTGCTCACC...TTCAACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR TCA 90 bp GGAGGGGACAGAGGCGGTGGCCCGTGTACAGTAGTAATGGCACTTAACGTGCGGCCAGGTTGGGGTGCTTaGTGCCTTCAAATATTTTCA +
Preference number: 4 (lower is better)
Translates to: GGDRGGGPCTVVMALNVRPGWGA*CLQIFS
Trigger: TGAAAATATTTGAAGGCATCAAGCACCCCAACCTGG...CCGCACGTTAAGTGCCATTACTACTGTACACGGGCCACCGCCTCTGTCCCCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp CTTTTCTTCAGCTTCACTTACGAGCCTTTGCATAACAAACCTGCAGCTTTCGAAGGGCTGTGGCGGCGGTaGTGGCCGCAGCTCCTCCAT +
Preference number: 4 (lower is better)
Translates to: LFFSFTYEPLHNKPAAFEGLWRR*WPQLLH
Trigger: ATGGAGGAGCTGCGGCCAGCACCGCCGCCACAGCCC...TTCGAAAGCTGCAGGTTTGTTATGCAAAGGCTCGTAAGTGAAGCTGAAGAAAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp CCTGCAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTAAGTCAAACAATGCCTaGTGGCTTCAGGGCCACAGT +
Preference number: 4 (lower is better)
Translates to: PAAFEQGGSTVRANDQEVKSNNA*WLQGHS
Trigger: ACTGTGGCCCTGAAGCCAGCAGGCATTGTTTGACTT...AACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGCAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp CCTGCAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTCAAAGGCATCCATGTTaGAGTCGGTCTTCTCCAGTC +
Preference number: 4 (lower is better)
Translates to: PAAFEQGGSTVRANDQEVQRHPC*SRSSPV
Trigger: GACTGGAGAAGACCGACTGCAACATGGATGCCTTTG...AACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGCAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp CCTGCAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTTGTTCCTCTGGTGCTTaGCTGACAGGCGTTTCATCT +
Preference number: 4 (lower is better)
Translates to: PAAFEQGGSTVRANDQEVCSSGA*LTGVSS
Trigger: AGATGAAACGCCTGTCAGCCAAGCACCAGAGGAACA...AACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGCAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp ACTTACGAGCCTTTGCATAACAAACCTGCAGCTTTCGAACAAGGAGGCTCCACACGTTGTCGTCGGCGCTaGTCCACAGCTCAGCACAGC +
Preference number: 4 (lower is better)
Translates to: TYEPLHNKPAAFEQGGSTRCRRR*STAQHS
Trigger: GCTGTGCTGAGCTGTGGACCAGCGCCGACGACAACG...TGTGGAGCCTCCTTGTTCGAAAGCTGCAGGTTTGTTATGCAAAGGCTCGTAAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp AGCACTGTCACTCAGCAGGCGACAGGAGCAGCAGAAGTGAGGCTTGTCACCCCTGGGGTATCGCACACTTaGCCGATGATATTCTTTCTC +
Preference number: 4 (lower is better)
Translates to: STVTQQATGAAEVRLVTPGVSHT*PMIFFL
Trigger: GAGAAAGAATATCATCGGCCAAGTGTGCGATACCCC...AGGGGTGACAAGCCTCACTTCTGCTGCTCCTGTCGCCTGCTGAGTGACAGTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp ACTTACGAGCCTTTGCATAACAAACCTGCAGCTTTCGAACAAGGAGGCTCCACATCTGCCGCACGTCCGTaGCCTTCTCCTTTGGCTCGG +
Preference number: 4 (lower is better)
Translates to: TYEPLHNKPAAFEQGGSTSAARP*PSPLAR
Trigger: CCGAGCCAAAGGAGAAGGCCACGGACGTGCGGCAGA...TGTGGAGCCTCCTTGTTCGAAAGCTGCAGGTTTGTTATGCAAAGGCTCGTAAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp TTTAACCTCAGCACTGTCACTCAGCAGGCGACAGGAGCAGCAGAAGTGAGGCTTACCTTGACAAAAGCGTaGTCGAGGAGCTGGCTGGCT +
Preference number: 4 (lower is better)
Translates to: FNLSTVTQQATGAAEVRLTLTKA*SRSWLA
Trigger: AGCCAGCCAGCTCCTCGACCACGCTTTTGTCAAGGT...AAGCCTCACTTCTGCTGCTCCTGTCGCCTGCTGAGTGACAGTGCTGAGGTTAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR TCA 90 bp AGTCCTGGGAGGTTAGGAAGGCCGCCTGCGCTGCAGTCTTTATGTAAATATTACACACGGTTTGTCTCCTaGGGGGTTCTGCACTGGCCT +
Preference number: 4 (lower is better)
Translates to: SPGRLGRPPALQSLCKYYTRFVS*GVLHWP
Trigger: AGGCCAGTGCAGAACCCCTCAGGAGACAAACCGTGT...GTAATATTTACATAAAGACTGCAGCGCAGGCGGCCTTCCTAACCTCCCAGGACT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR TCA 90 bp CCTTTGCATAACAAACCTGCAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCTGTCTGATAGGTTCTTaGTGCCCAGCACGGTGCCCA +
Preference number: 4 (lower is better)
Translates to: PLHNKPAAFEQGGSTVRACLIGS*CPARCP
Trigger: TGGGCACCGTGCTGGGCATCAAGAACCTATCAGACA...GGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGCAGGTTTGTTATGCAAAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR TCA 90 bp CCTGCAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTCTCCTATCTTCTGCCTaGATTCCCCAGACATCAAAC +
Preference number: 4 (lower is better)
Translates to: PAAFEQGGSTVRANDQEVLLSSA*IPQTSN
Trigger: GTTTGATGTCTGGGGAATTCAGGCAGAAGATAGGAG...AACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR TCA 90 bp GAGCCTTTGCATAACAAACCTGCAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGTCGGGATGATGAGGTaGGGGTTAGGAGGGTCACTG +
Preference number: 4 (lower is better)
Translates to: EPLHNKPAAFEQGGSTVRVGMMR*GLGGSL
Trigger: CAGTGACCCTCCTAACCCTCACCTCATCATCCCGAC...TCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGCAGGTTTGTTATGCAAAGGCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR TCA 90 bp CCTTTGCATAACAAACCTGCAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCGCCGACTCAGAGACCTaGACTGCAGTTCTGCAGCTA +
Preference number: 4 (lower is better)
Translates to: PLHNKPAAFEQGGSTVRAADSET*TAVLQL
Trigger: TAGCTGCAGAACTGCAGTTCAGGTCTCTGAGTCGGC...GGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGCAGGTTTGTTATGCAAAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp AGTCCTGGGAGGTTAGGAAGGCCGCCTGCGCTGCAGTCTTTATGTAAATATTACTCATCTGTCGAGGTGTaGTTGGGGGTGAGGTGCCGT +
Preference number: 4 (lower is better)
Translates to: SPGRLGRPPALQSLCKYYSSVEV*LGVRCR
Trigger: ACGGCACCTCACCCCCAAGCACACCTCGACAGATGA...GTAATATTTACATAAAGACTGCAGCGCAGGCGGCCTTCCTAACCTCCCAGGACT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp AACACTACATGTTCTTCTGAACCCCAGGAGCTCAAAAACACTGTGCTGATGACAGCTGGCCGGCCTCCCTaGGCTGTTCCTCTGGTGCTT +
Preference number: 4 (lower is better)
Translates to: NTTCSSEPQELKNTVLMTAGRPP*AVPLVL
Trigger: AAGCACCAGAGGAACAGCGCAGGGAGGCCGGCCAGC...TGTCATCAGCACAGTGTTTTTGAGCTCCTGGGGTTCAGAAGAACATGTAGTGTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp GCAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTGAACAAAGGCATCCATGTTaGAGTCGGTCTTCTCCAGTC +
Preference number: 4 (lower is better)
Translates to: AAFEQGGSTVRANDQEVEQRHPC*SRSSPV
Trigger: GACTGGAGAAGACCGACTGCAACATGGATGCCTTTG...TTCAACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp AGCACTGTCACTCAGCAGGCGACAGGAGCAGCAGAAGTGAGGCTTGTCACCCCTTTTCAGCAGCATCCCTaGGATGTCACAGAAAAGCTT +
Preference number: 4 (lower is better)
Translates to: STVTQQATGAAEVRLVTPFQQHP*DVTEKL
Trigger: AAGCTTTTCTGTGACATCGCAGGGATGCTGCTGAAA...AGGGGTGACAAGCCTCACTTCTGCTGCTCCTGTCGCCTGCTGAGTGACAGTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp GAGCCTTTGCATAACAAACCTGCAGCTTTCGAACAAGGAGGCTCCACAGTCAGACCCATCTGGGTCTTGTaGCTCTGCCGCTCTCGCATT +
Preference number: 4 (lower is better)
Translates to: EPLHNKPAAFEQGGSTVRPIWVL*LCRSRI
Trigger: AATGCGAGAGCGGCAGAGGCACAAGACCCAGATGGG...TCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGCAGGTTTGTTATGCAAAGGCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp GCAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTGAATGTCCTCAAAGTCCTTaGCGGCGTACCGTTCATAGT +
Preference number: 4 (lower is better)
Translates to: AAFEQGGSTVRANDQEVECPQSP*RRTVHS
Trigger: ACTATGAACGGTACGCCGCCAAGGACTTTGAGGACA...TTCAACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp GAGCCTTTGCATAACAAACCTGCAGCTTTCGAACAAGGAGGCTCCACAGTCAGACTCGGTCCCCATGCTTaGTCAGGAGCAGGAAGGCAT +
Preference number: 4 (lower is better)
Translates to: EPLHNKPAAFEQGGSTVRLGPHA*SGAGRH
Trigger: ATGCCTTCCTGCTCCTGACCAAGCATGGGGACCGAG...TCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGCAGGTTTGTTATGCAAAGGCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp TTTAACCTCAGCACTGTCACTCAGCAGGCGACAGGAGCAGCAGAAGTGAGGCTTTTGGCGATGATGGGCTaGCTAGATGTCTGCTCATGG +
Preference number: 4 (lower is better)
Translates to: FNLSTVTQQATGAAEVRLLAMMG*LDVCSW
Trigger: CCATGAGCAGACATCTAGCCAGCCCATCATCGCCAA...AAGCCTCACTTCTGCTGCTCCTGTCGCCTGCTGAGTGACAGTGCTGAGGTTAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp AGTCCTGGGAGGTTAGGAAGGCCGCCTGCGCTGCAGTCTTTATGTAAATATTACCCTTTCCGGGATTGGTaGCTTGTGTCCCATCCCCAC +
Preference number: 4 (lower is better)
Translates to: SPGRLGRPPALQSLCKYYPFRDW*LVSHPH
Trigger: GTGGGGATGGGACACAAGCCACCAATCCCGGAAAGG...GTAATATTTACATAAAGACTGCAGCGCAGGCGGCCTTCCTAACCTCCCAGGACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR TCA 90 bp GAGCCTTTGCATAACAAACCTGCAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGTCGTCTGGATCCTTTaGGCAGTCCTTTCCTGTGGC +
Preference number: 4 (lower is better)
Translates to: EPLHNKPAAFEQGGSTVRVVWIL*AVLSCG
Trigger: GCCACAGGAAAGGACTGCTCAAAGGATCCAGACGAC...TCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGCAGGTTTGTTATGCAAAGGCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR TCA 90 bp AGTCCTGGGAGGTTAGGAAGGCCGCCTGCGCTGCAGTCTTTATGTAAATATTACGCAGGAAGGCATCCATaGAGACGTCGTCTGGATCCT +
Preference number: 4 (lower is better)
Translates to: SPGRLGRPPALQSLCKYYAGRHP*RRRLDP
Trigger: AGGATCCAGACGACGTCTTCATGGATGCCTTCCTGC...GTAATATTTACATAAAGACTGCAGCGCAGGCGGCCTTCCTAACCTCCCAGGACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR TCA 90 bp TCTTCTGAACCCCAGGAGCTCAAAAACACTGTGCTGATGACACGGTTGGTTCTCGCCGACTCAGAGACCTaGACTGCAGTTCTGCAGCTA +
Preference number: 4 (lower is better)
Translates to: SSEPQELKNTVLMTRLVLADSET*TAVLQL
Trigger: TAGCTGCAGAACTGCAGTTCAGGTCTCTGAGTCGGC...GAGAACCAACCGTGTCATCAGCACAGTGTTTTTGAGCTCCTGGGGTTCAGAAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR TCA 90 bp GTCGGAGGGGACAGAGGCGGTGGCCCGTGTACAGTAGTAATGGCACTTAACGTGTTCAAACAGTCGGACTaGCTTCTGGATAGCTTCTAT +
Preference number: 4 (lower is better)
Translates to: VGGDRGGGPCTVVMALNVFKQSD*LLDSFY
Trigger: ATAGAAGCTATCCAGAAGTCAGTCCGACTGTTTGAA...CACGTTAAGTGCCATTACTACTGTACACGGGCCACCGCCTCTGTCCCCTCCGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp AACACTACATGTTCTTCTGAACCCCAGGAGCTCAAAAACACTGTGCTGATGACACCGACTCTCCCAACATaGACTCCTGCCTCGCCGCTG +
Preference number: 4 (lower is better)
Translates to: NTTCSSEPQELKNTVLMTPTLPT*TPASPL
Trigger: CAGCGGCGAGGCAGGAGTGCATGTTGGGAGAGTCGG...TGTCATCAGCACAGTGTTTTTGAGCTCCTGGGGTTCAGAAGAACATGTAGTGTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp AACACTACATGTTCTTCTGAACCCCAGGAGCTCAAAAACACTGTGCTGATGACAATGGTGCGGCCCGCGTaGCAGGCCTGCAGTTCTAAC +
Preference number: 4 (lower is better)
Translates to: NTTCSSEPQELKNTVLMTMVRPA*QACSSN
Trigger: GTTAGAACTGCAGGCCTGGCACGCGGGCCGCACCAT...TGTCATCAGCACAGTGTTTTTGAGCTCCTGGGGTTCAGAAGAACATGTAGTGTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp CAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTGAAAACCATCAGCATCTTCTaGAGGTCCTCCTCAAAGGCA +
Preference number: 4 (lower is better)
Translates to: QLSNKEAPQSEPTTRRLKTISIF*RSSSKA
Trigger: TGCCTTTGAGGAGGACCTGCAGAAGATGCTGATGGT...TTTCAACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp CCTGCAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTCTTAACATACTGCTTTaGTTTCAGAGCGTCCAGGAG +
Preference number: 4 (lower is better)
Translates to: PAAFEQGGSTVRANDQEVLNILL*FQSVQE
Trigger: CTCCTGGACGCTCTGAAAGCAAAGCAGTATGTTAAG...AACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGCAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp GGGAGGTTAGGAAGGCCGCCTGCGCTGCAGTCTTTATGTAAATATTACATACAGCCCGAGCTTCCCATGTaGCCCAGCCATCTTCTGAGT +
Preference number: 4 (lower is better)
Translates to: GRLGRPPALQSLCKYYIQPELPM*PSHLLS
Trigger: ACTCAGAAGATGGCTGGGGCACATGGGAAGCTCGGG...CTGTATGTAATATTTACATAAAGACTGCAGCGCAGGCGGCCTTCCTAACCTCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp ACATGTTCTTCTGAACCCCAGGAGCTCAAAAACACTGTGCTGATGACACGGTTGTCCGTGGGGCTTGAGTaGCGACTCAGAGACCTGAAC +
Preference number: 4 (lower is better)
Translates to: TCSSEPQELKNTVLMTRLSVGLE*RLRDLN
Trigger: GTTCAGGTCTCTGAGTCGGCACTCAAGCCCCACGGA...CAACCGTGTCATCAGCACAGTGTTTTTGAGCTCCTGGGGTTCAGAAGAACATGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp CAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTGAAATGTTCCTCTGGTGCTTaGCTGACAGGCGTTTCATCT +
Preference number: 4 (lower is better)
Translates to: QLSNKEAPQSEPTTRRLKCSSGA*LTGVSS
Trigger: AGATGAAACGCCTGTCAGCCAAGCACCAGAGGAACA...TTTCAACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp CTTTTCTTCAGCTTCACTTACGAGCCTTTGCATAACAAACCTGCAGCTTTCGAAGCCTCTCCAGCTTCCTaGAGACGCAGCCCTGGGAGC +
Preference number: 4 (lower is better)
Translates to: LFFSFTYEPLHNKPAAFEASPAS*RRSPGS
Trigger: GCTCCCAGGGCTGCGTCTCCAGGAAGCTGGAGAGGC...TTCGAAAGCTGCAGGTTTGTTATGCAAAGGCTCGTAAGTGAAGCTGAAGAAAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp CAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTGAAATGCCGCTCTCGCATTTaGTCAGCACGTAATTCATCC +
Preference number: 4 (lower is better)
Translates to: QLSNKEAPQSEPTTRRLKCRSRI*SARNSS
Trigger: GGATGAATTACGTGCTGACCAAATGCGAGAGCGGCA...TTTCAACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp TTCGAACAAGGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTGAAATAAACTGTGACAGGGCTGTGTaGCTTTCCTATGACGTGCCC +
Preference number: 4 (lower is better)
Translates to: FEQGGSTVRANDQEVEINCDRAV*LSYDVP
Trigger: GGGCACGTCATAGGAAAGCCACACAGCCCTGTCACA...GTTTATTTCAACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCCTTGTTCGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp GAGCCTTTGCATAACAAACCTGCAGCTTTCGAACAAGGAGGCTCCACAGTCAGATTAGGAGGGTCACTGTaGCATCGGGGCACCTTCACA +
Preference number: 4 (lower is better)
Translates to: EPLHNKPAAFEQGGSTVRLGGSL*HRGTFT
Trigger: TGTGAAGGTGCCCCGATGCCACAGTGACCCTCCTAA...TCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGCAGGTTTGTTATGCAAAGGCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp TCTTCTGAACCCCAGGAGCTCAAAAACACTGTGCTGATGACACGGTTGGTTCTCGGTGCTGAATCCCTCTaGAGTCGGGATGATGAGGTG +
Preference number: 4 (lower is better)
Translates to: SSEPQELKNTVLMTRLVLGAESL*SRDDEV
Trigger: CACCTCATCATCCCGACTCCAGAGGGATTCAGCACC...GAGAACCAACCGTGTCATCAGCACAGTGTTTTTGAGCTCCTGGGGTTCAGAAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000089058.7
CDS-3UTR CCA 90 bp CCTTTGCATAACAAACCTGCAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCGCAGTTCTGCAGCTATaGAGGCCAAGCGGTCGTTTT +
Preference number: 4 (lower is better)
Translates to: PLHNKPAAFEQGGSTVRAAVLQL*RPSGRF
Trigger: AAAACGACCGCTTGGCCTCCATAGCTGCAGAACTGC...GGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGCAGGTTTGTTATGCAAAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp CAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTGAAAATCGAATCTCCTTCATaGCCATCAGCTCCCCTGTGT +
Preference number: 4 (lower is better)
Translates to: QLSNKEAPQSEPTTRRLKIESPS*PSAPLC
Trigger: ACACAGGGGAGCTGATGGCCATGAAGGAGATTCGAT...TTTCAACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp AACACTACATGTTCTTCTGAACCCCAGGAGCTCAAAAACACTGTGCTGATGACAGCGTGGTCGAGGAGCTaGCTGGCTGTCCACCGTATC +
Preference number: 4 (lower is better)
Translates to: NTTCSSEPQELKNTVLMTAWSRS*LAVHRI
Trigger: GATACGGTGGACAGCCAGCCAGCTCCTCGACCACGC...TGTCATCAGCACAGTGTTTTTGAGCTCCTGGGGTTCAGAAGAACATGTAGTGTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp TTCGAACAAGGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTGAAATAAACACCCCTGAATCCCTCTaGAGTCGGGATGATGAGGTG +
Preference number: 4 (lower is better)
Translates to: FEQGGSTVRANDQEVEINTPESL*SRDDEV
Trigger: CACCTCATCATCCCGACTCCAGAGGGATTCAGGGGT...GTTTATTTCAACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCCTTGTTCGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233755.2
CDS-3UTR TCA 90 bp CCTTTGCATAACAAACCTGCAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCCTCGCACTAGCTGTTTaGTACTCAAGAGGGAAGGCT +
Preference number: 4 (lower is better)
Translates to: PLHNKPAAFEQGGSTVRALALAV*YSRGKA
Trigger: AGCCTTCCCTCTTGAGTATCAAACAGCTAGTGCGAG...GGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGCAGGTTTGTTATGCAAAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR TCA 90 bp ACATGTTCTTCTGAACCCCAGGAGCTCAAAAACACTGTGCTGATGACACGGTTGCCTTTGATGTCTCGGTaGACGATGCCGTGCTCATGG +
Preference number: 4 (lower is better)
Translates to: TCSSEPQELKNTVLMTRLPLMSR*TMPCSW
Trigger: CCATGAGCACGGCATCGTTCACCGAGACATCAAAGG...CAACCGTGTCATCAGCACAGTGTTTTTGAGCTCCTGGGGTTCAGAAGAACATGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp CTTTTCTTCAGCTTCACTTACGAGCCTTTGCATAACAAACCTGCAGCTTTCGAACCGACTCTCCCAACATaGACTCCTGCCTCGCCGCTG +
Preference number: 4 (lower is better)
Translates to: LFFSFTYEPLHNKPAAFEPTLPT*TPASPL
Trigger: CAGCGGCGAGGCAGGAGTGCATGTTGGGAGAGTCGG...TTCGAAAGCTGCAGGTTTGTTATGCAAAGGCTCGTAAGTGAAGCTGAAGAAAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp AGTCCTGGGAGGTTAGGAAGGCCGCCTGCGCTGCAGTCTTTATGTAAATATTACTGCTTGGGGGTGAGGTaGCGTAGAGAGTCTCTGTAT +
Preference number: 4 (lower is better)
Translates to: SPGRLGRPPALQSLCKYYCLGVR*RRESLY
Trigger: ATACAGAGACTCTCTACGGCACCTCACCCCCAAGCA...GTAATATTTACATAAAGACTGCAGCGCAGGCGGCCTTCCTAACCTCCCAGGACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp TGGCACTTAACGTGCGGCTCCTTTAACCTCAGCACTGTCACTCAGCAGGCGACATTTCTTAGCCCCATTTaGTTCAGTGCTTTGTCCACG +
Preference number: 4 (lower is better)
Translates to: WHLTCGSFNLSTVTQQATFLSPI*FSALST
Trigger: CGTGGACAAAGCACTGAAGCAAATGGGGCTAAGAAA...TGTCGCCTGCTGAGTGACAGTGCTGAGGTTAAAGGAGCCGCACGTTAAGTGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp TGGCACTTAACGTGCGGCTCCTTTAACCTCAGCACTGTCACTCAGCAGGCGACATTTCAGCAGCATCCCTaGGATGTCACAGAAAAGCTT +
Preference number: 4 (lower is better)
Translates to: WHLTCGSFNLSTVTQQATFQQHP*DVTEKL
Trigger: AAGCTTTTCTGTGACATCGCAGGGATGCTGCTGAAA...TGTCGCCTGCTGAGTGACAGTGCTGAGGTTAAAGGAGCCGCACGTTAAGTGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp CCTTTGCATAACAAACCTGCAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCGCATCGTTCTTGAGCTaGTGCAAACCTTTGGCGATG +
Preference number: 4 (lower is better)
Translates to: PLHNKPAAFEQGGSTVRAASFLS*CKPLAM
Trigger: CATCGCCAAAGGTTTGCAGCAGCTCAAGAACGATGC...GGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGCAGGTTTGTTATGCAAAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp CCTTTGCATAACAAACCTGCAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCGGCTTTCCTATGACGTaGCCGATGCACTCATTCATC +
Preference number: 4 (lower is better)
Translates to: PLHNKPAAFEQGGSTVRAGFPMT*PMHSFI
Trigger: GATGAATGAGTGCATCGGGCACGTCATAGGAAAGCC...GGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGCAGGTTTGTTATGCAAAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp GGAGGGGACAGAGGCGGTGGCCCGTGTACAGTAGTAATGGCACTTAACGTGCGGTATTTTCAACTCGTCTaGAGTCTCCTTGATAGTCTT +
Preference number: 4 (lower is better)
Translates to: GGDRGGGPCTVVMALNVRYFQLV*SLLDSL
Trigger: AAGACTATCAAGGAGACTGCAGACGAGTTGAAAATA...CCGCACGTTAAGTGCCATTACTACTGTACACGGGCCACCGCCTCTGTCCCCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp ACATGTTCTTCTGAACCCCAGGAGCTCAAAAACACTGTGCTGATGACACGGTTGTGTCTCGGTGAACGATaGCGTGCTCATGGAGGACGT +
Preference number: 4 (lower is better)
Translates to: TCSSEPQELKNTVLMTRLCLGER*RAHGGR
Trigger: ACGTCCTCCATGAGCACGGCATCGTTCACCGAGACA...CAACCGTGTCATCAGCACAGTGTTTTTGAGCTCCTGGGGTTCAGAAGAACATGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp ACCTTTTCTTCAGCTTCACTTACGAGCCTTTGCATAACAAACCTGCAGCTTTCGGAGACCCTCTGGCGCTaGAGGTGCTCGTGGTACGAT +
Preference number: 4 (lower is better)
Translates to: TFSSASLTSLCITNLQLSETLWR*RCSWYD
Trigger: ATCGTACCACGAGCACCTCCAGCGCCAGAGGGTCTC...CGAAAGCTGCAGGTTTGTTATGCAAAGGCTCGTAAGTGAAGCTGAAGAAAAGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp CCTTTGCATAACAAACCTGCAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCCAGAGCCTGCAAGGATaGGTAAAGTGCCTCCATGTA +
Preference number: 4 (lower is better)
Translates to: PLHNKPAAFEQGGSTVRAQSLQG*VKCLHV
Trigger: TACATGGAGGCACTTTACCCATCCTTGCAGGCTCTG...GGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGCAGGTTTGTTATGCAAAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp TCTTCTGAACCCCAGGAGCTCAAAAACACTGTGCTGATGACACGGTTGGTTCTCCTGTCCCCCAGCCTATaGAATCTTCCTCTGACTCGA +
Preference number: 4 (lower is better)
Translates to: SSEPQELKNTVLMTRLVLLSPSL*NLPLTR
Trigger: TCGAGTCAGAGGAAGATTCCATAGGCTGGGGGACAG...GAGAACCAACCGTGTCATCAGCACAGTGTTTTTGAGCTCCTGGGGTTCAGAAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp GAGCCTTTGCATAACAAACCTGCAGCTTTCGAACAAGGAGGCTCCACAGTCAGAAATCCGAGCCCCACATaGGACCTGGAAAGTCAGAGA +
Preference number: 4 (lower is better)
Translates to: EPLHNKPAAFEQGGSTVRNPSPT*DLESQR
Trigger: TCTCTGACTTTCCAGGTCCCATGTGGGGCTCGGATT...TCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGCAGGTTTGTTATGCAAAGGCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp CCTTTGCATAACAAACCTGCAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCAATCAAATCCTTGGGTaGCCCATCTGGGTCTTGTGC +
Preference number: 4 (lower is better)
Translates to: PLHNKPAAFEQGGSTVRANQILG*PIWVLC
Trigger: GCACAAGACCCAGATGGGCCACCCAAGGATTTGATT...GGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGCAGGTTTGTTATGCAAAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR TCA 90 bp AACACTACATGTTCTTCTGAACCCCAGGAGCTCAAAAACACTGTGCTGATGACAACACGGTTTGTCTCCTaGGGGGTTCTGCACTGGCCT +
Preference number: 4 (lower is better)
Translates to: NTTCSSEPQELKNTVLMTTRFVS*GVLHWP
Trigger: AGGCCAGTGCAGAACCCCTCAGGAGACAAACCGTGT...TGTCATCAGCACAGTGTTTTTGAGCTCCTGGGGTTCAGAAGAACATGTAGTGTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR TCA 90 bp GAGCCTTTGCATAACAAACCTGCAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGGACCTCCTGCAGCATaGACTGGTAATACTGCTTCA +
Preference number: 4 (lower is better)
Translates to: EPLHNKPAAFEQGGSTVRGPPAA*TGNTAS
Trigger: TGAAGCAGTATTACCAGTTCATGCTGCAGGAGGTCC...TCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGCAGGTTTGTTATGCAAAGGCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR TCA 90 bp ACTTACGAGCCTTTGCATAACAAACCTGCAGCTTTCGAACAAGGAGGCTCCACAGGTGAGCAGACTCCATaGCAACCAGCAGAAGGTTGT +
Preference number: 4 (lower is better)
Translates to: TYEPLHNKPAAFEQGGSTGEQTP*QPAEGC
Trigger: ACAACCTTCTGCTGGTTGTCATGGAGTCTGCTCACC...TGTGGAGCCTCCTTGTTCGAAAGCTGCAGGTTTGTTATGCAAAGGCTCGTAAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR TCA 90 bp CTTTTCTTCAGCTTCACTTACGAGCCTTTGCATAACAAACCTGCAGCTTTCGAACTCTTCCGTGGGGCTTaGGTGCCGACTCAGAGACCT +
Preference number: 4 (lower is better)
Translates to: LFFSFTYEPLHNKPAAFELFRGA*VPTQRP
Trigger: AGGTCTCTGAGTCGGCACTCAAGCCCCACGGAAGAG...TTCGAAAGCTGCAGGTTTGTTATGCAAAGGCTCGTAAGTGAAGCTGAAGAAAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp AACACTACATGTTCTTCTGAACCCCAGGAGCTCAAAAACACTGTGCTGATGACACCCGCGTGCCAGGCCTaGAGTTCTAACCAGATCAGT +
Preference number: 4 (lower is better)
Translates to: NTTCSSEPQELKNTVLMTPACQA*SSNQIS
Trigger: ACTGATCTGGTTAGAACTGCAGGCCTGGCACGCGGG...TGTCATCAGCACAGTGTTTTTGAGCTCCTGGGGTTCAGAAGAACATGTAGTGTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp TCTTCTGAACCCCAGGAGCTCAAAAACACTGTGCTGATGACACGGTTGGTTCTCAAGTCAAACAATGCCTaGTGGCTTCAGGGCCACAGT +
Preference number: 4 (lower is better)
Translates to: SSEPQELKNTVLMTRLVLKSNNA*WLQGHS
Trigger: ACTGTGGCCCTGAAGCCAGCAGGCATTGTTTGACTT...GAGAACCAACCGTGTCATCAGCACAGTGTTTTTGAGCTCCTGGGGTTCAGAAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp CCTTTGCATAACAAACCTGCAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCTCGTTCTTGAGCTGCTaGAAACCTTTGGCGATGATG +
Preference number: 4 (lower is better)
Translates to: PLHNKPAAFEQGGSTVRASFLSC*KPLAMM
Trigger: CATCATCGCCAAAGGTTTGCAGCAGCTCAAGAACGA...GGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGCAGGTTTGTTATGCAAAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp GAGCCTTTGCATAACAAACCTGCAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGGCTTTCCTATGACGTaGCCGATGCACTCATTCATC +
Preference number: 4 (lower is better)
Translates to: EPLHNKPAAFEQGGSTVRGFPMT*PMHSFI
Trigger: GATGAATGAGTGCATCGGGCACGTCATAGGAAAGCC...TCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGCAGGTTTGTTATGCAAAGGCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp TTCGAACAAGGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTGAAATAAACCTCAGAGACCTGAACTaGAGTTCTGCAGCTATGGAG +
Preference number: 4 (lower is better)
Translates to: FEQGGSTVRANDQEVEINLRDLN*SSAAME
Trigger: CTCCATAGCTGCAGAACTGCAGTTCAGGTCTCTGAG...GTTTATTTCAACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCCTTGTTCGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp CCTTTGCATAACAAACCTGCAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCCGGACCAGGTTGGGGTaGTTGATGCCTTCAAATATT +
Preference number: 4 (lower is better)
Translates to: PLHNKPAAFEQGGSTVRARTRLG*LMPSNI
Trigger: AATATTTGAAGGCATCAAGCACCCCAACCTGGTCCG...GGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGCAGGTTTGTTATGCAAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp CTTTTCTTCAGCTTCACTTACGAGCCTTTGCATAACAAACCTGCAGCTTTCGAACTGATGACGTGCTCCTaGAGGCCCAGTCGTGACACC +
Preference number: 4 (lower is better)
Translates to: LFFSFTYEPLHNKPAAFELMTCS*RPSRDT
Trigger: GGTGTCACGACTGGGCCTGCAGGAGCACGTCATCAG...TTCGAAAGCTGCAGGTTTGTTATGCAAAGGCTCGTAAGTGAAGCTGAAGAAAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp AGTCCTGGGAGGTTAGGAAGGCCGCCTGCGCTGCAGTCTTTATGTAAATATTACTGCCGCTCTCGCATTTaGTCAGCACGTAATTCATCC +
Preference number: 4 (lower is better)
Translates to: SPGRLGRPPALQSLCKYYCRSRI*SARNSS
Trigger: GGATGAATTACGTGCTGACCAAATGCGAGAGCGGCA...GTAATATTTACATAAAGACTGCAGCGCAGGCGGCCTTCCTAACCTCCCAGGACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp GGGAGGTTAGGAAGGCCGCCTGCGCTGCAGTCTTTATGTAAATATTACATACAGGCAGTTCTGCAGCTATaGAGGCCAAGCGGTCGTTTT +
Preference number: 4 (lower is better)
Translates to: GRLGRPPALQSLCKYYIQAVLQL*RPSGRF
Trigger: AAAACGACCGCTTGGCCTCCATAGCTGCAGAACTGC...CTGTATGTAATATTTACATAAAGACTGCAGCGCAGGCGGCCTTCCTAACCTCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp CCTTTGCATAACAAACCTGCAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCGGGGTATCGCACACTTaGCCGATGATATTCTTTCTC +
Preference number: 4 (lower is better)
Translates to: PLHNKPAAFEQGGSTVRAGVSHT*PMIFFL
Trigger: GAGAAAGAATATCATCGGCCAAGTGTGCGATACCCC...GGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGCAGGTTTGTTATGCAAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR TCA 90 bp ACATGTTCTTCTGAACCCCAGGAGCTCAAAAACACTGTGCTGATGACACGGTTGGGACCTCCTGCAGCATaGACTGGTAATACTGCTTCA +
Preference number: 4 (lower is better)
Translates to: TCSSEPQELKNTVLMTRLGPPAA*TGNTAS
Trigger: TGAAGCAGTATTACCAGTTCATGCTGCAGGAGGTCC...CAACCGTGTCATCAGCACAGTGTTTTTGAGCTCCTGGGGTTCAGAAGAACATGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR TCA 90 bp ACATGTTCTTCTGAACCCCAGGAGCTCAAAAACACTGTGCTGATGACACGGTTGGGTCGATGGCATCGCTaGTTCTGTTGCATAGCTCAA +
Preference number: 4 (lower is better)
Translates to: TCSSEPQELKNTVLMTRLGRWHR*FCCIAQ
Trigger: TTGAGCTATGCAACAGAATCAGCGATGCCATCGACC...CAACCGTGTCATCAGCACAGTGTTTTTGAGCTCCTGGGGTTCAGAAGAACATGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR TCA 90 bp ACTTACGAGCCTTTGCATAACAAACCTGCAGCTTTCGAACAAGGAGGCTCCACAGGTCGATGGCATCGCTaGTTCTGTTGCATAGCTCAA +
Preference number: 4 (lower is better)
Translates to: TYEPLHNKPAAFEQGGSTGRWHR*FCCIAQ
Trigger: TTGAGCTATGCAACAGAATCAGCGATGCCATCGACC...TGTGGAGCCTCCTTGTTCGAAAGCTGCAGGTTTGTTATGCAAAGGCTCGTAAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR TCA 90 bp CCTTTGCATAACAAACCTGCAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCCCAGGTTGGGGTGCTTaGTGCCTTCAAATATTTTCA +
Preference number: 4 (lower is better)
Translates to: PLHNKPAAFEQGGSTVRAPGWGA*CLQIFS
Trigger: TGAAAATATTTGAAGGCATCAAGCACCCCAACCTGG...GGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGCAGGTTTGTTATGCAAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR TCA 90 bp CCTTTGCATAACAAACCTGCAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCCATCACAGTACTCCATaGAGATGTACATCTCTTCCC +
Preference number: 4 (lower is better)
Translates to: PLHNKPAAFEQGGSTVRAHHSTP*RCTSLP
Trigger: GGGAAGAGATGTACATCTTCATGGAGTACTGTGATG...GGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGCAGGTTTGTTATGCAAAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp CTTTTCTTCAGCTTCACTTACGAGCCTTTGCATAACAAACCTGCAGCTTTCGAACCCGCGTGCCAGGCCTaGAGTTCTAACCAGATCAGT +
Preference number: 4 (lower is better)
Translates to: LFFSFTYEPLHNKPAAFEPACQA*SSNQIS
Trigger: ACTGATCTGGTTAGAACTGCAGGCCTGGCACGCGGG...TTCGAAAGCTGCAGGTTTGTTATGCAAAGGCTCGTAAGTGAAGCTGAAGAAAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp GGGAGGTTAGGAAGGCCGCCTGCGCTGCAGTCTTTATGTAAATATTACATACAGATTATCCGCTTCACCTaGTCAAACGAGACCCTCTGG +
Preference number: 4 (lower is better)
Translates to: GRLGRPPALQSLCKYYIQIIRFT*SNETLW
Trigger: CCAGAGGGTCTCGTTTGAGCAGGTGAAGCGGATAAT...CTGTATGTAATATTTACATAAAGACTGCAGCGCAGGCGGCCTTCCTAACCTCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp CTTTTCTTCAGCTTCACTTACGAGCCTTTGCATAACAAACCTGCAGCTTTCGAACCCGAGCTTCCCATGTaGCCCAGCCATCTTCTGAGT +
Preference number: 4 (lower is better)
Translates to: LFFSFTYEPLHNKPAAFEPELPM*PSHLLS
Trigger: ACTCAGAAGATGGCTGGGGCACATGGGAAGCTCGGG...TTCGAAAGCTGCAGGTTTGTTATGCAAAGGCTCGTAAGTGAAGCTGAAGAAAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp ACATGTTCTTCTGAACCCCAGGAGCTCAAAAACACTGTGCTGATGACACGGTTGCTCAGAGACCTGAACTaGAGTTCTGCAGCTATGGAG +
Preference number: 4 (lower is better)
Translates to: TCSSEPQELKNTVLMTRLLRDLN*SSAAME
Trigger: CTCCATAGCTGCAGAACTGCAGTTCAGGTCTCTGAG...CAACCGTGTCATCAGCACAGTGTTTTTGAGCTCCTGGGGTTCAGAAGAACATGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp GAGCCTTTGCATAACAAACCTGCAGCTTTCGAACAAGGAGGCTCCACAGTCAGACGGACCAGGTTGGGGTaGTTGATGCCTTCAAATATT +
Preference number: 4 (lower is better)
Translates to: EPLHNKPAAFEQGGSTVRRTRLG*LMPSNI
Trigger: AATATTTGAAGGCATCAAGCACCCCAACCTGGTCCG...TCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGCAGGTTTGTTATGCAAAGGCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp AACACTACATGTTCTTCTGAACCCCAGGAGCTCAAAAACACTGTGCTGATGACATCAAACAATGCCTGCTaGCTTCAGGGCCACAGTCCG +
Preference number: 4 (lower is better)
Translates to: NTTCSSEPQELKNTVLMTSNNAC*LQGHSP
Trigger: CGGACTGTGGCCCTGAAGCCAGCAGGCATTGTTTGA...TGTCATCAGCACAGTGTTTTTGAGCTCCTGGGGTTCAGAAGAACATGTAGTGTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp ACCTTTTCTTCAGCTTCACTTACGAGCCTTTGCATAACAAACCTGCAGCTTTCGAGGAAGGCAGGTCCATaGCTCTCAGTTCTTCCCAGG +
Preference number: 4 (lower is better)
Translates to: TFSSASLTSLCITNLQLSRKAGP*LSVLPR
Trigger: CCTGGGAAGAACTGAGAGCCATGGACCTGCCTTCCT...CGAAAGCTGCAGGTTTGTTATGCAAAGGCTCGTAAGTGAAGCTGAAGAAAAGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp ACTTACGAGCCTTTGCATAACAAACCTGCAGCTTTCGAACAAGGAGGCTCCACAGCCGAGTCTTTGGTCTaGCTGATGAGTGTTCGAAGT +
Preference number: 4 (lower is better)
Translates to: TYEPLHNKPAAFEQGGSTAESLV*LMSVRS
Trigger: ACTTCGAACACTCATCAGCCAGACCAAAGACTCGGC...TGTGGAGCCTCCTTGTTCGAAAGCTGCAGGTTTGTTATGCAAAGGCTCGTAAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp ACCTTTTCTTCAGCTTCACTTACGAGCCTTTGCATAACAAACCTGCAGCTTTCGACGATGCCGTGCTCATaGAGGACGTTGATGGCGACA +
Preference number: 4 (lower is better)
Translates to: TFSSASLTSLCITNLQLSTMPCS*RTLMAT
Trigger: TGTCGCCATCAACGTCCTCCATGAGCACGGCATCGT...CGAAAGCTGCAGGTTTGTTATGCAAAGGCTCGTAAGTGAAGCTGAAGAAAAGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp ACCTTTTCTTCAGCTTCACTTACGAGCCTTTGCATAACAAACCTGCAGCTTTCGACCTTGACAAAAGCGTaGTCGAGGAGCTGGCTGGCT +
Preference number: 4 (lower is better)
Translates to: TFSSASLTSLCITNLQLSTLTKA*SRSWLA
Trigger: AGCCAGCCAGCTCCTCGACCACGCTTTTGTCAAGGT...CGAAAGCTGCAGGTTTGTTATGCAAAGGCTCGTAAGTGAAGCTGAAGAAAAGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR TCA 90 bp CCTTTGCATAACAAACCTGCAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCATGATCCGCAGCTTCTaGTTTAGATCTTTCGTGATG +
Preference number: 4 (lower is better)
Translates to: PLHNKPAAFEQGGSTVRAMIRSF*FRSFVM
Trigger: CATCACGAAAGATCTAAATCAGAAGCTGCGGATCAT...GGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGCAGGTTTGTTATGCAAAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp AGTCCTGGGAGGTTAGGAAGGCCGCCTGCGCTGCAGTCTTTATGTAAATATTACTTTCTTAGCCCCATTTaGTTCAGTGCTTTGTCCACG +
Preference number: 4 (lower is better)
Translates to: SPGRLGRPPALQSLCKYYFLSPI*FSALST
Trigger: CGTGGACAAAGCACTGAAGCAAATGGGGCTAAGAAA...GTAATATTTACATAAAGACTGCAGCGCAGGCGGCCTTCCTAACCTCCCAGGACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp AACACTACATGTTCTTCTGAACCCCAGGAGCTCAAAAACACTGTGCTGATGACAAAAAGCTTTCCAGCCTaGGCTTCTCCGCCACGGATA +
Preference number: 4 (lower is better)
Translates to: NTTCSSEPQELKNTVLMTKSFPA*ASPPRI
Trigger: TATCCGTGGCGGAGAAGCGCAGGCTGGAAAGCTTTT...TGTCATCAGCACAGTGTTTTTGAGCTCCTGGGGTTCAGAAGAACATGTAGTGTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp CTTTTCTTCAGCTTCACTTACGAGCCTTTGCATAACAAACCTGCAGCTTTCGAAGGTTGTCCACCTGCATaGTTCTCAGGGTGTCCACAG +
Preference number: 4 (lower is better)
Translates to: LFFSFTYEPLHNKPAAFEGCPPA*FSGCPQ
Trigger: CTGTGGACACCCTGAGAAGCATGCAGGTGGACAACC...TTCGAAAGCTGCAGGTTTGTTATGCAAAGGCTCGTAAGTGAAGCTGAAGAAAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp GGGAGGTTAGGAAGGCCGCCTGCGCTGCAGTCTTTATGTAAATATTACATACAGTCGTTCTTGAGCTGCTaGAAACCTTTGGCGATGATG +
Preference number: 4 (lower is better)
Translates to: GRLGRPPALQSLCKYYIQSFLSC*KPLAMM
Trigger: CATCATCGCCAAAGGTTTGCAGCAGCTCAAGAACGA...CTGTATGTAATATTTACATAAAGACTGCAGCGCAGGCGGCCTTCCTAACCTCCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp CAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTGAAATCATTCATCAGGGCTTaGAAACTCAAGAAGTCATCT +
Preference number: 4 (lower is better)
Translates to: QLSNKEAPQSEPTTRRLKSFIRA*KLKKSS
Trigger: AGATGACTTCTTGAGTTTGCAAGCCCTGATGAATGA...TTTCAACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp CTTTTCTTCAGCTTCACTTACGAGCCTTTGCATAACAAACCTGCAGCTTTCGAACCTGAACTGCAGTTCTaGAGCTATGGAGGCCAAGCG +
Preference number: 4 (lower is better)
Translates to: LFFSFTYEPLHNKPAAFEPELQF*SYGGQA
Trigger: CGCTTGGCCTCCATAGCTGCAGAACTGCAGTTCAGG...TTCGAAAGCTGCAGGTTTGTTATGCAAAGGCTCGTAAGTGAAGCTGAAGAAAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp ACCTTTTCTTCAGCTTCACTTACGAGCCTTTGCATAACAAACCTGCAGCTTTCGAGTCGGACTGACTTCTaGATAGCTTCTATGGGCCCC +
Preference number: 4 (lower is better)
Translates to: TFSSASLTSLCITNLQLSSRTDF*IASMGP
Trigger: GGGGCCCATAGAAGCTATCCAGAAGTCAGTCCGACT...CGAAAGCTGCAGGTTTGTTATGCAAAGGCTCGTAAGTGAAGCTGAAGAAAAGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR TCA 90 bp ACCTTTTCTTCAGCTTCACTTACGAGCCTTTGCATAACAAACCTGCAGCTTTCGCTCGCACTAGCTGTTTaGTACTCAAGAGGGAAGGCT +
Preference number: 4 (lower is better)
Translates to: TFSSASLTSLCITNLQLSLALAV*YSRGKA
Trigger: AGCCTTCCCTCTTGAGTATCAAACAGCTAGTGCGAG...CGAAAGCTGCAGGTTTGTTATGCAAAGGCTCGTAAGTGAAGCTGAAGAAAAGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp ACCTTTTCTTCAGCTTCACTTACGAGCCTTTGCATAACAAACCTGCAGCTTTCGATTATCCGCTTCACCTaGTCAAACGAGACCCTCTGG +
Preference number: 4 (lower is better)
Translates to: TFSSASLTSLCITNLQLSIIRFT*SNETLW
Trigger: CCAGAGGGTCTCGTTTGAGCAGGTGAAGCGGATAAT...CGAAAGCTGCAGGTTTGTTATGCAAAGGCTCGTAAGTGAAGCTGAAGAAAAGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp AACACTACATGTTCTTCTGAACCCCAGGAGCTCAAAAACACTGTGCTGATGACAACCATCAGCATCTTCTaGAGGTCCTCCTCAAAGGCA +
Preference number: 4 (lower is better)
Translates to: NTTCSSEPQELKNTVLMTTISIF*RSSSKA
Trigger: TGCCTTTGAGGAGGACCTGCAGAAGATGCTGATGGT...TGTCATCAGCACAGTGTTTTTGAGCTCCTGGGGTTCAGAAGAACATGTAGTGTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp CTTTATGTAAATATTACATACAGTAGTGATCACGGGATTCTGTCCACACACTACCTGATGACGTGCTCCTaGAGGCCCAGTCGTGACACC +
Preference number: 4 (lower is better)
Translates to: LYVNITYSSDHGILSTHYLMTCS*RPSRDT
Trigger: GGTGTCACGACTGGGCCTGCAGGAGCACGTCATCAG...GTAGTGTGTGGACAGAATCCCGTGATCACTACTGTATGTAATATTTACATAAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp ACCTTTTCTTCAGCTTCACTTACGAGCCTTTGCATAACAAACCTGCAGCTTTCGAATCAAATCCTTGGGTaGCCCATCTGGGTCTTGTGC +
Preference number: 4 (lower is better)
Translates to: TFSSASLTSLCITNLQLSNQILG*PIWVLC
Trigger: GCACAAGACCCAGATGGGCCACCCAAGGATTTGATT...CGAAAGCTGCAGGTTTGTTATGCAAAGGCTCGTAAGTGAAGCTGAAGAAAAGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp CTTTATGTAAATATTACATACAGTAGTGATCACGGGATTCTGTCCACACACTACCGTCTCGCTCTTCCGTaGGGCTTGAGTGCCGACTCA +
Preference number: 4 (lower is better)
Translates to: LYVNITYSSDHGILSTHYRLALP*GLSADS
Trigger: TGAGTCGGCACTCAAGCCCCACGGAAGAGCGAGACG...GTAGTGTGTGGACAGAATCCCGTGATCACTACTGTATGTAATATTTACATAAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp ACCTTTTCTTCAGCTTCACTTACGAGCCTTTGCATAACAAACCTGCAGCTTTCGGCCGAGTCTTTGGTCTaGCTGATGAGTGTTCGAAGT +
Preference number: 4 (lower is better)
Translates to: TFSSASLTSLCITNLQLSAESLV*LMSVRS
Trigger: ACTTCGAACACTCATCAGCCAGACCAAAGACTCGGC...CGAAAGCTGCAGGTTTGTTATGCAAAGGCTCGTAAGTGAAGCTGAAGAAAAGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp AACACTACATGTTCTTCTGAACCCCAGGAGCTCAAAAACACTGTGCTGATGACAATCGAATCTCCTTCATaGCCATCAGCTCCCCTGTGT +
Preference number: 4 (lower is better)
Translates to: NTTCSSEPQELKNTVLMTIESPS*PSAPLC
Trigger: ACACAGGGGAGCTGATGGCCATGAAGGAGATTCGAT...TGTCATCAGCACAGTGTTTTTGAGCTCCTGGGGTTCAGAAGAACATGTAGTGTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp ACTTACGAGCCTTTGCATAACAAACCTGCAGCTTTCGAACAAGGAGGCTCCACATGTACCTTAACATACTaGTTTGCTTTCAGAGCGTCC +
Preference number: 4 (lower is better)
Translates to: TYEPLHNKPAAFEQGGSTCTLTY*FAFRAS
Trigger: GGACGCTCTGAAAGCAAAGCAGTATGTTAAGGTACA...TGTGGAGCCTCCTTGTTCGAAAGCTGCAGGTTTGTTATGCAAAGGCTCGTAAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp GAGCCTTTGCATAACAAACCTGCAGCTTTCGAACAAGGAGGCTCCACAGTCAGATCATTCATCAGGGCTTaGAAACTCAAGAAGTCATCT +
Preference number: 4 (lower is better)
Translates to: EPLHNKPAAFEQGGSTVRSFIRA*KLKKSS
Trigger: AGATGACTTCTTGAGTTTGCAAGCCCTGATGAATGA...TCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGCAGGTTTGTTATGCAAAGGCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp CTTTTCTTCAGCTTCACTTACGAGCCTTTGCATAACAAACCTGCAGCTTTCGAATGTCCTCAAAGTCCTTaGCGGCGTACCGTTCATAGT +
Preference number: 4 (lower is better)
Translates to: LFFSFTYEPLHNKPAAFECPQSP*RRTVHS
Trigger: ACTATGAACGGTACGCCGCCAAGGACTTTGAGGACA...TTCGAAAGCTGCAGGTTTGTTATGCAAAGGCTCGTAAGTGAAGCTGAAGAAAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR TCA 90 bp AACACTACATGTTCTTCTGAACCCCAGGAGCTCAAAAACACTGTGCTGATGACACATCACAGTACTCCATaGAGATGTACATCTCTTCCC +
Preference number: 4 (lower is better)
Translates to: NTTCSSEPQELKNTVLMTHHSTP*RCTSLP
Trigger: GGGAAGAGATGTACATCTTCATGGAGTACTGTGATG...TGTCATCAGCACAGTGTTTTTGAGCTCCTGGGGTTCAGAAGAACATGTAGTGTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR TCA 90 bp CTTTATGTAAATATTACATACAGTAGTGATCACGGGATTCTGTCCACACACTACCCTTTGATGTCTCGGTaGACGATGCCGTGCTCATGG +
Preference number: 4 (lower is better)
Translates to: LYVNITYSSDHGILSTHYPLMSR*TMPCSW
Trigger: CCATGAGCACGGCATCGTTCACCGAGACATCAAAGG...GTAGTGTGTGGACAGAATCCCGTGATCACTACTGTATGTAATATTTACATAAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp CTTTTCTTCAGCTTCACTTACGAGCCTTTGCATAACAAACCTGCAGCTTTCGAACCCCATTTGCTTCAGTaGTTTGTCCACGAATGGTCT +
Preference number: 4 (lower is better)
Translates to: LFFSFTYEPLHNKPAAFEPHLLQ*FVHEWS
Trigger: AGACCATTCGTGGACAAAGCACTGAAGCAAATGGGG...TTCGAAAGCTGCAGGTTTGTTATGCAAAGGCTCGTAAGTGAAGCTGAAGAAAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp CTTTTCTTCAGCTTCACTTACGAGCCTTTGCATAACAAACCTGCAGCTTTCGAATTGTCTCCTATCTTCTaGCTGAATTCCCCAGACATC +
Preference number: 4 (lower is better)
Translates to: LFFSFTYEPLHNKPAAFELSPIF*LNSPDI
Trigger: GATGTCTGGGGAATTCAGGCAGAAGATAGGAGACAA...TTCGAAAGCTGCAGGTTTGTTATGCAAAGGCTCGTAAGTGAAGCTGAAGAAAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp CTTTATGTAAATATTACATACAGTAGTGATCACGGGATTCTGTCCACACACTACCTTTCCCTGGCTTCGTaGAAGAGCTCCTTGAGTGCT +
Preference number: 4 (lower is better)
Translates to: LYVNITYSSDHGILSTHYLSLAS*KSSLSA
Trigger: AGCACTCAAGGAGCTCTTCCACGAAGCCAGGGAAAG...GTAGTGTGTGGACAGAATCCCGTGATCACTACTGTATGTAATATTTACATAAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp CTTTATGTAAATATTACATACAGTAGTGATCACGGGATTCTGTCCACACACTACAGTCGGACTGACTTCTaGATAGCTTCTATGGGCCCC +
Preference number: 4 (lower is better)
Translates to: LYVNITYSSDHGILSTHYSRTDF*IASMGP
Trigger: GGGGCCCATAGAAGCTATCCAGAAGTCAGTCCGACT...GTAGTGTGTGGACAGAATCCCGTGATCACTACTGTATGTAATATTTACATAAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
3UTR CAA 72 bp AAAAAGAACCTTTTCTTCAGCTTCACTTACGAGCCTTaGCATAACAAACCTGCAGCTTTCGAACAAGGAGGC +
Preference number: 4 (lower is better)
Translates to: KKNLFFSFTYEP*HNKPAAFEQGG
Trigger: GCCTCCTTGTTCGAAAGCTGCAGGTTTGTTATGCAAAGGCTCGTAAGTGAAGCTGAAGAAAAGGTTCTTTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR TCA 90 bp CTTTTCTTCAGCTTCACTTACGAGCCTTTGCATAACAAACCTGCAGCTTTCGAATTCAAACAGTCGGACTaGCTTCTGGATAGCTTCTAT +
Preference number: 4 (lower is better)
Translates to: LFFSFTYEPLHNKPAAFEFKQSD*LLDSFY
Trigger: ATAGAAGCTATCCAGAAGTCAGTCCGACTGTTTGAA...TTCGAAAGCTGCAGGTTTGTTATGCAAAGGCTCGTAAGTGAAGCTGAAGAAAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp CTTTTCTTCAGCTTCACTTACGAGCCTTTGCATAACAAACCTGCAGCTTTCGAATGTACCTTAACATACTaGTTTGCTTTCAGAGCGTCC +
Preference number: 4 (lower is better)
Translates to: LFFSFTYEPLHNKPAAFECTLTY*FAFRAS
Trigger: GGACGCTCTGAAAGCAAAGCAGTATGTTAAGGTACA...TTCGAAAGCTGCAGGTTTGTTATGCAAAGGCTCGTAAGTGAAGCTGAAGAAAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp CTTTATGTAAATATTACATACAGTAGTGATCACGGGATTCTGTCCACACACTACGCATCGTTCTTGAGCTaGTGCAAACCTTTGGCGATG +
Preference number: 4 (lower is better)
Translates to: LYVNITYSSDHGILSTHYASFLS*CKPLAM
Trigger: CATCGCCAAAGGTTTGCAGCAGCTCAAGAACGATGC...GTAGTGTGTGGACAGAATCCCGTGATCACTACTGTATGTAATATTTACATAAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CCA 90 bp CTTTATGTAAATATTACATACAGTAGTGATCACGGGATTCTGTCCACACACTACTGTAGCCCTGAATCATaGCTTCTCGGTAGTACTGCT +
Preference number: 4 (lower is better)
Translates to: LYVNITYSSDHGILSTHYCSPES*LLGSTA
Trigger: AGCAGTACTACCGAGAAGCCATGATTCAGGGCTACA...GTAGTGTGTGGACAGAATCCCGTGATCACTACTGTATGTAATATTTACATAAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp CTTTATGTAAATATTACATACAGTAGTGATCACGGGATTCTGTCCACACACTACCTTAACATACTGCTTTaGTTTCAGAGCGTCCAGGAG +
Preference number: 4 (lower is better)
Translates to: LYVNITYSSDHGILSTHYLNILL*FQSVQE
Trigger: CTCCTGGACGCTCTGAAAGCAAAGCAGTATGTTAAG...GTAGTGTGTGGACAGAATCCCGTGATCACTACTGTATGTAATATTTACATAAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp CTTTATGTAAATATTACATACAGTAGTGATCACGGGATTCTGTCCACACACTACTTGTCTCCTATCTTCTaGCTGAATTCCCCAGACATC +
Preference number: 4 (lower is better)
Translates to: LYVNITYSSDHGILSTHYLSPIF*LNSPDI
Trigger: GATGTCTGGGGAATTCAGGCAGAAGATAGGAGACAA...GTAGTGTGTGGACAGAATCCCGTGATCACTACTGTATGTAATATTTACATAAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR GCA 90 bp CTTTTCTTCAGCTTCACTTACGAGCCTTTGCATAACAAACCTGCAGCTTTCGAATATTTTCAACTCGTCTaGAGTCTCCTTGATAGTCTT +
Preference number: 4 (lower is better)
Translates to: LFFSFTYEPLHNKPAAFEYFQLV*SLLDSL
Trigger: AAGACTATCAAGGAGACTGCAGACGAGTTGAAAATA...TTCGAAAGCTGCAGGTTTGTTATGCAAAGGCTCGTAAGTGAAGCTGAAGAAAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS GCA 90 bp CTCGGGCTGTGGCGGCGGTGCTGGCCGCAGCTCCTCCATGGCGGCTaGAGGGGTGTCGGCGAGGGCAGGAGGGGGCACCGGCTCGGCGAT +
Preference number: 5 (lower is better)
Translates to: LGLWRRCWPQLLHGG*RGVGEGRRGHRLGD
Trigger: ATCGCCGAGCCGGTGCCCCCTCCTGCCCTCGCCGACACCCCTGCAGCCGCCATGGAGGAGCTGCGGCCAGCACCGCCGCCACAGCCCGAG
77% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CCA 90 bp GATCCGGCTCGGGCTGTGGCGGCGGTGCTGGCCGCAGCTCCTCCATaGCGGCTGCAGGGGTGTCGGCGAGGGCAGGAGGGGGCACCGGCT +
Preference number: 5 (lower is better)
Translates to: DPARAVAAVLAAAPP*RLQGCRRGQEGAPA
Trigger: AGCCGGTGCCCCCTCCTGCCCTCGCCGACACCCCTGCAGCCGCCATGGAGGAGCTGCGGCCAGCACCGCCGCCACAGCCCGAGCCGGATC
77% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CCA 90 bp GGCGTCTGTGGACAGCCTGAGCTCTGGCACCCTCGGACTGGGGGTTaGCTCCTCGTCACTCTCCTCCGTCCCGCTCTCCAGCTCCCTCAG +
Preference number: 5 (lower is better)
Translates to: GVCGQPELWHPRTGG*LLVTLLRPALQLPQ
Trigger: CTGAGGGAGCTGGAGAGCGGGACGGAGGAGAGTGACGAGGAGCCAACCCCCAGTCCGAGGGTGCCAGAGCTCAGGCTGTCCACAGACGCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CCA 90 bp GCACAGAGTCACCACCACCTGGGCCAGGGCGGCCAGCAGCAGTGGTaGCGGCGGCAGCAACAGCAGCAGCAGCAGCAACAGAGTTGCCAT +
Preference number: 5 (lower is better)
Translates to: AQSHHHLGQGGQQQW*RRQQQQQQQQQSCH
Trigger: ATGGCAACTCTGTTGCTGCTGCTGCTGCTGTTGCTGCCGCCGCCACCACTGCTGCTGGCCGCCCTGGCCCAGGTGGTGGTGACTCTGTGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089058.7
CDS CCA 90 bp GTGGCGGCGGCAGCAACAGCAGCAGCAGCAGCAACAGAGTTGCCATaGGTCCGAGCGTCGGAAGGCACGCTCCGGGTGCTGAATCCCTCT +
Preference number: 5 (lower is better)
Translates to: VAAAATAAAAATELP*VRASEGTLRVLNPS
Trigger: AGAGGGATTCAGCACCCGGAGCGTGCCTTCCGACGCTCGGACCCATGGCAACTCTGTTGCTGCTGCTGCTGCTGTTGCTGCCGCCGCCAC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089058.7
CDS TCA 90 bp TTCAGGGCCACAGTCCGCTGTCCCCCAGCCTATGGAATCTTCCTCTaGCTCGAGCCTCTCCAGCTTCCTGGAGACGCAGCCCTGGGAGCG +
Preference number: 5 (lower is better)
Translates to: FRATVRCPPAYGIFL*LEPLQLPGDAALGA
Trigger: CGCTCCCAGGGCTGCGTCTCCAGGAAGCTGGAGAGGCTCGAGTCAGAGGAAGATTCCATAGGCTGGGGGACAGCGGACTGTGGCCCTGAA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS TCA 90 bp GGCACGCTCCGGGTGCTGAATCCCTCTGGAGTCGGGATGATGAGGTaGGGGTTAGGAGGGTCACTGTGGCATCGGGGCACCTTCACAGGG +
Preference number: 5 (lower is better)
Translates to: GTLRVLNPSGVGMMR*GLGGSLWHRGTFTG
Trigger: CCCTGTGAAGGTGCCCCGATGCCACAGTGACCCTCCTAACCCTCACCTCATCATCCCGACTCCAGAGGGATTCAGCACCCGGAGCGTGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089058.7
CDS CCA 90 bp AGTTCGATCGGCTGGCCGGCCTCCCTGCGCTGTTCCTCTGGTGCTTaGCTGACAGGCGTTTCATCTGTCGAGGTGTGCTTGGGGGTGAGG +
Preference number: 5 (lower is better)
Translates to: SSIGWPASLRCSSGA*LTGVSSVEVCLGVR
Trigger: CCTCACCCCCAAGCACACCTCGACAGATGAAACGCCTGTCAGCCAAGCACCAGAGGAACAGCGCAGGGAGGCCGGCCAGCCGATCGAACT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000089058.7
ENSMUST00000233002.2
ENSMUST00000233012.2
ENSMUST00000233755.2
CDS CCA 90 bp CTCCAGCTCCCTCAGCTCAACCTCCGTGTCCTCGACCTCGTCCTCTaGCTCGTAGCCCTTGGACGGCCGAGGGGAGGGGATTTCAAACAC +
Preference number: 5 (lower is better)
Translates to: LQLPQLNLRVLDLVL*LVALGRPRGGDFKH
Trigger: GTGTTTGAAATCCCCTCCCCTCGGCCGTCCAAGGGCTACGAGCCAGAGGACGAGGTCGAGGACACGGAGGTTGAGCTGAGGGAGCTGGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CCA 90 bp GACACTGGAACCCCTGGTATCAGGGGCAGTGTTGACAGGTTTGGCTaGCACAGAGTCACCACCACCTGGGCCAGGGCGGCCAGCAGCAGT +
Preference number: 5 (lower is better)
Translates to: DTGTPGIRGSVDRFG*HRVTTTWARAASSS
Trigger: ACTGCTGCTGGCCGCCCTGGCCCAGGTGGTGGTGACTCTGTGCCAGCCAAACCTGTCAACACTGCCCCTGATACCAGGGGTTCCAGTGTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089058.7
CDS TCA 90 bp CTGCTCAAACGAGACCCTCTGGCGCTGGAGGTGCTCGTGGTACGATaGGCAGCCCACACGGTTTGTCTCCTGAGGGGTTCTGCACTGGCC +
Preference number: 5 (lower is better)
Translates to: LLKRDPLALEVLVVR*AAHTVCLLRGSALA
Trigger: GGCCAGTGCAGAACCCCTCAGGAGACAAACCGTGTGGGCTGCTCATCGTACCACGAGCACCTCCAGCGCCAGAGGGTCTCGTTTGAGCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CCA 90 bp GCTCAACCTCCGTGTCCTCGACCTCGTCCTCTGGCTCGTAGCCCTTaGACGGCCGAGGGGAGGGGATTTCAAACACTGGCCAGCCAATGT +
Preference number: 5 (lower is better)
Translates to: AQPPCPRPRPLARSP*TAEGRGFQTLASQC
Trigger: ACATTGGCTGGCCAGTGTTTGAAATCCCCTCCCCTCGGCCGTCCAAGGGCTACGAGCCAGAGGACGAGGTCGAGGACACGGAGGTTGAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS GCA 90 bp CTCCGAGGATACGCTGGCTCGTCTCGCTCTTCCGTGGGGCTTGAGTaGCGACTCAGAGACCTGAACTGCAGTTCTGCAGCTATGGAGGCC +
Preference number: 5 (lower is better)
Translates to: LRGYAGSSRSSVGLE*RLRDLNCSSAAMEA
Trigger: GGCCTCCATAGCTGCAGAACTGCAGTTCAGGTCTCTGAGTCGGCACTCAAGCCCCACGGAAGAGCGAGACGAGCCAGCGTATCCTCGGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS GCA 90 bp TCCCATGTGCCCCAGCCATCTTCTGAGTCACGGGCTCGGTCCCCATaGTTGGTCAGGAGCAGGAAGGCATCCATGAAGACGTCGTCTGGA +
Preference number: 5 (lower is better)
Translates to: SHVPQPSSESRARSP*LVRSRKASMKTSSG
Trigger: TCCAGACGACGTCTTCATGGATGCCTTCCTGCTCCTGACCAAGCATGGGGACCGAGCCCGTGACTCAGAAGATGGCTGGGGCACATGGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CCA 90 bp TCTTTCAAGTTCGATCGGCTGGCCGGCCTCCCTGCGCTGTTCCTCTaGTGCTTGGCTGACAGGCGTTTCATCTGTCGAGGTGTGCTTGGG +
Preference number: 5 (lower is better)
Translates to: SFKFDRLAGLPALFL*CLADRRFICRGVLG
Trigger: CCCAAGCACACCTCGACAGATGAAACGCCTGTCAGCCAAGCACCAGAGGAACAGCGCAGGGAGGCCGGCCAGCCGATCGAACTTGAAAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000089058.7
ENSMUST00000233002.2
ENSMUST00000233012.2
ENSMUST00000233755.2
CDS TCA 90 bp GGAGCCCGCCCTTTAGGACCTCTTTACACTCTCGCACTAGCTGTTTaGTACTCAAGAGGGAAGGCTCCCCGGCAGGCCTCTGTTCCAGCC +
Preference number: 5 (lower is better)
Translates to: GARPLGPLYTLALAV*YSRGKAPRQASVPA
Trigger: GGCTGGAACAGAGGCCTGCCGGGGAGCCTTCCCTCTTGAGTATCAAACAGCTAGTGCGAGAGTGTAAAGAGGTCCTAAAGGGCGGGCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS TCA 90 bp CACGGGCTCGGTCCCCATGCTTGGTCAGGAGCAGGAAGGCATCCATaGAGACGTCGTCTGGATCCTTTGAGCAGTCCTTTCCTGTGGCAG +
Preference number: 5 (lower is better)
Translates to: HGLGPHAWSGAGRHP*RRRLDPLSSPFLWQ
Trigger: CTGCCACAGGAAAGGACTGCTCAAAGGATCCAGACGACGTCTTCATGGATGCCTTCCTGCTCCTGACCAAGCATGGGGACCGAGCCCGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS TCA 90 bp GCTCGTCTCGCTCTTCCGTGGGGCTTGAGTGCCGACTCAGAGACCTaGACTGCAGTTCTGCAGCTATGGAGGCCAAGCGGTCGTTTTCAG +
Preference number: 5 (lower is better)
Translates to: ARLALPWGLSADSET*TAVLQLWRPSGRFQ
Trigger: CTGAAAACGACCGCTTGGCCTCCATAGCTGCAGAACTGCAGTTCAGGTCTCTGAGTCGGCACTCAAGCCCCACGGAAGAGCGAGACGAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS TCA 90 bp GTCACTCCGAGGATACGCTGGCTCGTCTCGCTCTTCCGTGGGGCTTaGGTGCCGACTCAGAGACCTGAACTGCAGTTCTGCAGCTATGGA +
Preference number: 5 (lower is better)
Translates to: VTPRIRWLVSLFRGA*VPTQRPELQFCSYG
Trigger: TCCATAGCTGCAGAACTGCAGTTCAGGTCTCTGAGTCGGCACTCAAGCCCCACGGAAGAGCGAGACGAGCCAGCGTATCCTCGGAGTGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CCA 90 bp AGCTCCATTATCCGCTTCACCTGCTCAAACGAGACCCTCTGGCGCTaGAGGTGCTCGTGGTACGATGAGCAGCCCACACGGTTTGTCTCC +
Preference number: 5 (lower is better)
Translates to: SSIIRFTCSNETLWR*RCSWYDEQPTRFVS
Trigger: GGAGACAAACCGTGTGGGCTGCTCATCGTACCACGAGCACCTCCAGCGCCAGAGGGTCTCGTTTGAGCAGGTGAAGCGGATAATGGAGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CCA 90 bp TCCAGCAGCTCCATTATCCGCTTCACCTGCTCAAACGAGACCCTCTaGCGCTGGAGGTGCTCGTGGTACGATGAGCAGCCCACACGGTTT +
Preference number: 5 (lower is better)
Translates to: SSSSIIRFTCSNETL*RWRCSWYDEQPTRF
Trigger: AAACCGTGTGGGCTGCTCATCGTACCACGAGCACCTCCAGCGCCAGAGGGTCTCGTTTGAGCAGGTGAAGCGGATAATGGAGCTGCTGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS TCA 90 bp AGGTTGTCCACCTGCATGCTTCTCAGGGTGTCCACAGTCTCCACCTaGGGCACAATTTTGACAGCCCGAGCTTCCCATGTGCCCCAGCCA +
Preference number: 5 (lower is better)
Translates to: RLSTCMLLRVSTVST*GTILTARASHVPQP
Trigger: TGGCTGGGGCACATGGGAAGCTCGGGCTGTCAAAATTGTGCCTCAGGTGGAGACTGTGGACACCCTGAGAAGCATGCAGGTGGACAACCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS GCA 90 bp TCTCGCTCTTCCGTGGGGCTTGAGTGCCGACTCAGAGACCTGAACTaGAGTTCTGCAGCTATGGAGGCCAAGCGGTCGTTTTCAGGGACA +
Preference number: 5 (lower is better)
Translates to: SRSSVGLECRLRDLN*SSAAMEAKRSFSGT
Trigger: TGTCCCTGAAAACGACCGCTTGGCCTCCATAGCTGCAGAACTGCAGTTCAGGTCTCTGAGTCGGCACTCAAGCCCCACGGAAGAGCGAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CAA 90 bp CCTGCAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTTCTACCAAGGGCCCGTaGAAACCGGCTCCATTGCTG +
Preference number: 5 (lower is better)
Translates to: PAAFEQGGSTVRANDQEVSTKGP*KPAPLL
Trigger: CAGCAATGGAGCCGGTTTCAACGGGCCCTTGGTAGA...AACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGCAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CAA 90 bp GTCGGAGGGGACAGAGGCGGTGGCCCGTGTACAGTAGTAATGGCACTTAACGTGCGTCGTCTGGATCCTTaGAGCAGTCCTTTCCTGTGG +
Preference number: 5 (lower is better)
Translates to: VGGDRGGGPCTVVMALNVRRLDP*SSPFLW
Trigger: CCACAGGAAAGGACTGCTCAAAGGATCCAGACGACG...CACGTTAAGTGCCATTACTACTGTACACGGGCCACCGCCTCTGTCCCCTCCGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CAA 90 bp GCAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTGAATCCGGGATTGGTGGCTaGTGTCCCATCCCCACCTTG +
Preference number: 5 (lower is better)
Translates to: AAFEQGGSTVRANDQEVESGIGG*CPIPTL
Trigger: CAAGGTGGGGATGGGACACAAGCCACCAATCCCGGA...TTCAACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS TCA 90 bp GCATGCTTCTCAGGGTGTCCACAGTCTCCACCTGAGGCACAATTTTaGCAGCCCGAGCTTCCCATGTGCCCCAGCCATCTTCTGAGTCAC +
Preference number: 5 (lower is better)
Translates to: ACFSGCPQSPPEAQF*QPELPMCPSHLLSH
Trigger: GTGACTCAGAAGATGGCTGGGGCACATGGGAAGCTCGGGCTGTCAAAATTGTGCCTCAGGTGGAGACTGTGGACACCCTGAGAAGCATGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS GCA 90 bp GCCAGTCACCATCTCTATGACGACGCACCCCAGACTCCAGATATCTaGCGCACGTCCGTGGCCTTCTCCTTTGGCTCGGGTAATAACTTC +
Preference number: 5 (lower is better)
Translates to: ASHHLYDDAPQTPDI*RTSVAFSFGSGNNF
Trigger: GAAGTTATTACCCGAGCCAAAGGAGAAGGCCACGGACGTGCGGCAGATATCTGGAGTCTGGGGTGCGTCGTCATAGAGATGGTGACTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CCA 90 bp AGGTGTTCCCGACAACTGCACATAATCCGAGCCCCACATGGGACCTaGAAAGTCAGAGAACTCCACTGGACGGTCGTCCTTCACCAGAGC +
Preference number: 5 (lower is better)
Translates to: RCSRQLHIIRAPHGT*KVRELHWTVVLHQS
Trigger: GCTCTGGTGAAGGACGACCGTCCAGTGGAGTTCTCTGACTTTCCAGGTCCCATGTGGGGCTCGGATTATGTGCAGTTGTCGGGAACACCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CAA 90 bp CAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTGAAATCTGTCGAGGTGTGCTaGGGGGTGAGGTGCCGTAGA +
Preference number: 5 (lower is better)
Translates to: QLSNKEAPQSEPTTRRLKSVEVC*GVRCRR
Trigger: TCTACGGCACCTCACCCCCAAGCACACCTCGACAGA...TTTCAACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CAA 90 bp GCAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTGAATCGTGGAAGAGCTCCTaGAGTGCTCGGCTGATCTCG +
Preference number: 5 (lower is better)
Translates to: AAFEQGGSTVRANDQEVESWKSS*SARLIS
Trigger: CGAGATCAGCCGAGCACTCAAGGAGCTCTTCCACGA...TTCAACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CAA 90 bp GTCGGAGGGGACAGAGGCGGTGGCCCGTGTACAGTAGTAATGGCACTTAACGTGAAATACCGGACCAGGTaGGGGTGCTTGATGCCTTCA +
Preference number: 5 (lower is better)
Translates to: VGGDRGGGPCTVVMALNVKYRTR*GCLMPS
Trigger: TGAAGGCATCAAGCACCCCAACCTGGTCCGGTATTT...CACGTTAAGTGCCATTACTACTGTACACGGGCCACCGCCTCTGTCCCCTCCGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CAA 90 bp CCTGCAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTTGCTCATGGAGGACGTaGATGGCGACAGTGATCTGC +
Preference number: 5 (lower is better)
Translates to: PAAFEQGGSTVRANDQEVCSWRT*MATVIC
Trigger: GCAGATCACTGTCGCCATCAACGTCCTCCATGAGCA...AACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS TCA 90 bp CATGGCTCTCAGTTCTTCCCAGGACACAGCGCTACACTTCTGCTCTaGGGAAGGAGGTGTTCCCGACAACTGCACATAATCCGAGCCCCA +
Preference number: 5 (lower is better)
Translates to: HGSQFFPGHSATLLL*GRRCSRQLHIIRAP
Trigger: TGGGGCTCGGATTATGTGCAGTTGTCGGGAACACCTCCTTCCTCAGAGCAGAAGTGTAGCGCTGTGTCCTGGGAAGAACTGAGAGCCATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CCA 90 bp AGGAAGGAGGTGTTCCCGACAACTGCACATAATCCGAGCCCCACATaGGACCTGGAAAGTCAGAGAACTCCACTGGACGGTCGTCCTTCA +
Preference number: 5 (lower is better)
Translates to: RKEVFPTTAHNPSPT*DLESQRTPLDGRPS
Trigger: TGAAGGACGACCGTCCAGTGGAGTTCTCTGACTTTCCAGGTCCCATGTGGGGCTCGGATTATGTGCAGTTGTCGGGAACACCTCCTTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CCA 90 bp CACTCTTCATCTGTGCAAACCTTGACAAAAGCGTGGTCGAGGAGCTaGCTGGCTGTCCACCGTATCTTCGGGTCACTTTCCAGGCAGTGC +
Preference number: 5 (lower is better)
Translates to: HSSSVQTLTKAWSRS*LAVHRIFGSLSRQC
Trigger: GCACTGCCTGGAAAGTGACCCGAAGATACGGTGGACAGCCAGCCAGCTCCTCGACCACGCTTTTGTCAAGGTTTGCACAGATGAAGAGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CAA 90 bp GAGCCTTTGCATAACAAACCTGCAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCTCTTCCGTGGGGCTaGAGTGCCGACTCAGAGACC +
Preference number: 5 (lower is better)
Translates to: EPLHNKPAAFEQGGSTVRALPWG*SADSET
Trigger: GGTCTCTGAGTCGGCACTCAAGCCCCACGGAAGAGC...TCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGCAGGTTTGTTATGCAAAGGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CAA 90 bp TGGCACTTAACGTGCGGCTCCTTTAACCTCAGCACTGTCACTCAGCAGGCGACATCATGCCAAGGCCGCTaGCCAGTCACCATCTCTATG +
Preference number: 5 (lower is better)
Translates to: WHLTCGSFNLSTVTQQATSCQGR*PVTISM
Trigger: CATAGAGATGGTGACTGGCAAGCGGCCTTGGCATGA...TGTCGCCTGCTGAGTGACAGTGCTGAGGTTAAAGGAGCCGCACGTTAAGTGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS GCA 90 bp AGAAAGAGGTCCTGGTCATTGATGGTGCGGCCCGCGTGCCAGGCCTaGAGTTCTAACCAGATCAGTTCGTTCGATCGGTTGAACCAGAAA +
Preference number: 5 (lower is better)
Translates to: RKRSWSLMVRPACQA*SSNQISSFDRLNQK
Trigger: TTTCTGGTTCAACCGATCGAACGAACTGATCTGGTTAGAACTGCAGGCCTGGCACGCGGGCCGCACCATCAATGACCAGGACCTCTTTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS GCA 90 bp TTGAGCTGCTGCAAACCTTTGGCGATGATGGGCTGGCTAGATGTCTaGTCATGGCGTACAGTCATCAGCCCCTCAATGGACTGCTGGAAG +
Preference number: 5 (lower is better)
Translates to: LSCCKPLAMMGWLDV*SWRTVISPSMDCWK
Trigger: CTTCCAGCAGTCCATTGAGGGGCTGATGACTGTACGCCATGAGCAGACATCTAGCCAGCCCATCATCGCCAAAGGTTTGCAGCAGCTCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CCA 90 bp CTTGGCGGCGTACCGTTCATAGTCCTTCTGCAGAGCCTGCAAGGATaGGTAAAGTGCCTCCATGTACTCCAGCAGCTCCATTATCCGCTT +
Preference number: 5 (lower is better)
Translates to: LGGVPFIVLLQSLQG*VKCLHVLQQLHYPL
Trigger: AAGCGGATAATGGAGCTGCTGGAGTACATGGAGGCACTTTACCCATCCTTGCAGGCTCTGCAGAAGGACTATGAACGGTACGCCGCCAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CCA 90 bp ATTTTAGCAAAGCCCAGGGCCTTGGAGGCTCTTTCCCTGGCTTCGTaGAAGAGCTCCTTGAGTGCTCGGCTGATCTCGATGACAGATCTC +
Preference number: 5 (lower is better)
Translates to: ILAKPRALEALSLAS*KSSLSARLISMTDL
Trigger: GAGATCTGTCATCGAGATCAGCCGAGCACTCAAGGAGCTCTTCCACGAAGCCAGGGAAAGAGCCTCCAAGGCCCTGGGCTTTGCTAAAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CCA 90 bp GACTCAGACTCCTCGACCTCAGCATCGAACTCCAGGGTGAACATGTaGTCCACACGGTCGATGGCATCGCTGATTCTGTTGCATAGCTCA +
Preference number: 5 (lower is better)
Translates to: DSDSSTSASNSRVNM*STRSMASLILLHSS
Trigger: TGAGCTATGCAACAGAATCAGCGATGCCATCGACCGTGTGGACCACATGTTCACCCTGGAGTTCGATGCTGAGGTCGAGGAGTCTGAGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CAA 90 bp ACTTACGAGCCTTTGCATAACAAACCTGCAGCTTTCGAACAAGGAGGCTCCACAGCAAAGCCCAGGGCCTaGGAGGCTCTTTCCCTGGCT +
Preference number: 5 (lower is better)
Translates to: TYEPLHNKPAAFEQGGSTAKPRA*EALSLA
Trigger: AGCCAGGGAAAGAGCCTCCAAGGCCCTGGGCTTTGC...TGTGGAGCCTCCTTGTTCGAAAGCTGCAGGTTTGTTATGCAAAGGCTCGTAAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CAA 90 bp TGGCACTTAACGTGCGGCTCCTTTAACCTCAGCACTGTCACTCAGCAGGCGACAACAACCAGCAGAAGGTaGTCCACCTGCATGCTTCTC +
Preference number: 5 (lower is better)
Translates to: WHLTCGSFNLSTVTQQATTTSRR*STCMLL
Trigger: GAGAAGCATGCAGGTGGACAACCTTCTGCTGGTTGT...TGTCGCCTGCTGAGTGACAGTGCTGAGGTTAAAGGAGCCGCACGTTAAGTGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CAA 90 bp GCAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTGAAACAACCAGCAGAAGGTaGTCCACCTGCATGCTTCTC +
Preference number: 5 (lower is better)
Translates to: AAFEQGGSTVRANDQEVETTSRR*STCMLL
Trigger: GAGAAGCATGCAGGTGGACAACCTTCTGCTGGTTGT...TTCAACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CAA 90 bp CAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTGAAATGCTCATGGAGGACGTaGATGGCGACAGTGATCTGC +
Preference number: 5 (lower is better)
Translates to: QLSNKEAPQSEPTTRRLKCSWRT*MATVIC
Trigger: GCAGATCACTGTCGCCATCAACGTCCTCCATGAGCA...TTTCAACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CAA 90 bp GGAGGGGACAGAGGCGGTGGCCCGTGTACAGTAGTAATGGCACTTAACGTGCGGGGCATGGTCTGGGCGTaGTTTTTAAGTTTTACAGAG +
Preference number: 5 (lower is better)
Translates to: GGDRGGGPCTVVMALNVRGMVWA*FLSFTE
Trigger: CTCTGTAAAACTTAAAAACAACGCCCAGACCATGCC...CCGCACGTTAAGTGCCATTACTACTGTACACGGGCCACCGCCTCTGTCCCCTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS GCA 90 bp ATGGCGACAGTGATCTGCTTGGTATATAACCTGATGACGTGCTCCTaGAGGCCCAGTCGTGACACCTCCTCTAGTGTACCCTCATCACAG +
Preference number: 5 (lower is better)
Translates to: MATVICLVYNLMTCS*RPSRDTSSSVPSSQ
Trigger: CTGTGATGAGGGTACACTAGAGGAGGTGTCACGACTGGGCCTGCAGGAGCACGTCATCAGGTTATATACCAAGCAGATCACTGTCGCCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS GCA 90 bp ACGTTGATGGCGACAGTGATCTGCTTGGTATATAACCTGATGACGTaGTCCTGCAGGCCCAGTCGTGACACCTCCTCTAGTGTACCCTCA +
Preference number: 5 (lower is better)
Translates to: TLMATVICLVYNLMT*SCRPSRDTSSSVPS
Trigger: TGAGGGTACACTAGAGGAGGTGTCACGACTGGGCCTGCAGGAGCACGTCATCAGGTTATATACCAAGCAGATCACTGTCGCCATCAACGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CCA 90 bp TGCTGCAAACCTTTGGCGATGATGGGCTGGCTAGATGTCTGCTCATaGCGTACAGTCATCAGCCCCTCAATGGACTGCTGGAAGGCTTTT +
Preference number: 5 (lower is better)
Translates to: CCKPLAMMGWLDVCS*RTVISPSMDCWKAF
Trigger: AAAAGCCTTCCAGCAGTCCATTGAGGGGCTGATGACTGTACGCCATGAGCAGACATCTAGCCAGCCCATCATCGCCAAAGGTTTGCAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CCA 90 bp AGTGCATCGTTCTTGAGCTGCTGCAAACCTTTGGCGATGATGGGCTaGCTAGATGTCTGCTCATGGCGTACAGTCATCAGCCCCTCAATG +
Preference number: 5 (lower is better)
Translates to: SASFLSCCKPLAMMG*LDVCSWRTVISPSM
Trigger: CATTGAGGGGCTGATGACTGTACGCCATGAGCAGACATCTAGCCAGCCCATCATCGCCAAAGGTTTGCAGCAGCTCAAGAACGATGCACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CCA 90 bp TGGATAGCTTCTATGGGCCCCTGCTTAGAGGCCGAGTCTTTGGTCTaGCTGATGAGTGTTCGAAGTTCCCAGCTTCTCCGAGTTGATCCA +
Preference number: 5 (lower is better)
Translates to: WIASMGPCLEAESLV*LMSVRSSQLLRVDP
Trigger: TGGATCAACTCGGAGAAGCTGGGAACTTCGAACACTCATCAGCCAGACCAAAGACTCGGCCTCTAAGCAGGGGCCCATAGAAGCTATCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CAA 90 bp ACATGTTCTTCTGAACCCCAGGAGCTCAAAAACACTGTGCTGATGACACGGTTGTCTGTCGAGGTGTGCTaGGGGGTGAGGTGCCGTAGA +
Preference number: 5 (lower is better)
Translates to: TCSSEPQELKNTVLMTRLSVEVC*GVRCRR
Trigger: TCTACGGCACCTCACCCCCAAGCACACCTCGACAGA...CAACCGTGTCATCAGCACAGTGTTTTTGAGCTCCTGGGGTTCAGAAGAACATGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CAA 90 bp CCTTTGCATAACAAACCTGCAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCCGTCGTCTGGATCCTTaGAGCAGTCCTTTCCTGTGG +
Preference number: 5 (lower is better)
Translates to: PLHNKPAAFEQGGSTVRARRLDP*SSPFLW
Trigger: CCACAGGAAAGGACTGCTCAAAGGATCCAGACGACG...GGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGCAGGTTTGTTATGCAAAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CAA 90 bp GGAGGGGACAGAGGCGGTGGCCCGTGTACAGTAGTAATGGCACTTAACGTGCGGGCGAAGCTTATATATTaGTCTCCTATCTTCTGCCTG +
Preference number: 5 (lower is better)
Translates to: GGDRGGGPCTVVMALNVRAKLIY*SPIFCL
Trigger: CAGGCAGAAGATAGGAGACAAATATATAAGCTTCGC...CCGCACGTTAAGTGCCATTACTACTGTACACGGGCCACCGCCTCTGTCCCCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CAA 90 bp AGCACTGTCACTCAGCAGGCGACAGGAGCAGCAGAAGTGAGGCTTGTCACCCCTCTCATTCATCAGGGCTaGCAAACTCAAGAAGTCATC +
Preference number: 5 (lower is better)
Translates to: STVTQQATGAAEVRLVTPLIHQG*QTQEVI
Trigger: GATGACTTCTTGAGTTTGCAAGCCCTGATGAATGAG...AGGGGTGACAAGCCTCACTTCTGCTGCTCCTGTCGCCTGCTGAGTGACAGTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CAA 90 bp AGCACTGTCACTCAGCAGGCGACAGGAGCAGCAGAAGTGAGGCTTGTCACCCCTCCAAAATCTCCCAGCTaGATTAGTCCAGATGACGTA +
Preference number: 5 (lower is better)
Translates to: STVTQQATGAAEVRLVTPPKSPS*ISPDDV
Trigger: TACGTCATCTGGACTAATCAAGCTGGGAGATTTTGG...AGGGGTGACAAGCCTCACTTCTGCTGCTCCTGTCGCCTGCTGAGTGACAGTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CAA 90 bp GGGAGGTTAGGAAGGCCGCCTGCGCTGCAGTCTTTATGTAAATATTACATACAGTCCGGGATTGGTGGCTaGTGTCCCATCCCCACCTTG +
Preference number: 5 (lower is better)
Translates to: GRLGRPPALQSLCKYYIQSGIGG*CPIPTL
Trigger: CAAGGTGGGGATGGGACACAAGCCACCAATCCCGGA...CTGTATGTAATATTTACATAAAGACTGCAGCGCAGGCGGCCTTCCTAACCTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS TCA 90 bp ACTGCTGGAAGGCTTTTCTCTGAAGTACGAGGTGAGCAGACTCCATaGCAACCAGCAGAAGGTTGTCCACCTGCATGCTTCTCAGGGTGT +
Preference number: 5 (lower is better)
Translates to: TAGRLFSEVRGEQTP*QPAEGCPPACFSGC
Trigger: ACACCCTGAGAAGCATGCAGGTGGACAACCTTCTGCTGGTTGTCATGGAGTCTGCTCACCTCGTACTTCAGAGAAAAGCCTTCCAGCAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS TCA 90 bp CTTTCTCCTCATCTCTCGATACCTCCTCTCTTCAAACAGTCGGACTaGCTTCTGGATAGCTTCTATGGGCCCCTGCTTAGAGGCCGAGTC +
Preference number: 5 (lower is better)
Translates to: LSPHLSIPPLFKQSD*LLDSFYGPLLRGRV
Trigger: GACTCGGCCTCTAAGCAGGGGCCCATAGAAGCTATCCAGAAGTCAGTCCGACTGTTTGAAGAGAGGAGGTATCGAGAGATGAGGAGAAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS TCA 90 bp TCCGGGATTGGTGGCTTGTGTCCCATCCCCACCTTGTACATAATCTaGAAGTTGTGTTCATACTCATGCCAAGGCCGCTTGCCAGTCACC +
Preference number: 5 (lower is better)
Translates to: SGIGGLCPIPTLYII*KLCSYSCQGRLPVT
Trigger: GGTGACTGGCAAGCGGCCTTGGCATGAGTATGAACACAACTTTCAGATTATGTACAAGGTGGGGATGGGACACAAGCCACCAATCCCGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS GCA 90 bp TATTTGTTTCATCAGAAAAGTCCTCTGGATCGGATTCCATACTTTTaGGAGCCGACTCTCCCAACATGCACTCCTGCCTCGCCGCTGGGC +
Preference number: 5 (lower is better)
Translates to: YLFHQKSPLDRIPYF*EPTLPTCTPASPLG
Trigger: GCCCAGCGGCGAGGCAGGAGTGCATGTTGGGAGAGTCGGCTCGCAAAAGTATGGAATCCGATCCAGAGGACTTTTCTGATGAAACAAATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS GCA 90 bp TGTTCCTCTGGTGCTTGGCTGACAGGCGTTTCATCTGTCGAGGTGTaGTTGGGGGTGAGGTGCCGTAGAGAGTCTCTGTATTTGTTTCAT +
Preference number: 5 (lower is better)
Translates to: CSSGAWLTGVSSVEV*LGVRCRRESLYLFH
Trigger: ATGAAACAAATACAGAGACTCTCTACGGCACCTCACCCCCAAGCACACCTCGACAGATGAAACGCCTGTCAGCCAAGCACCAGAGGAACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000089058.7
ENSMUST00000233002.2
ENSMUST00000233012.2
ENSMUST00000233755.2
CDS CCA 90 bp CTTGGGTGGCCCATCTGGGTCTTGTGCCTCTGCCGCTCTCGCATTTaGTCAGCACGTAATTCATCCACTTCTGGGCGAAGCTTATATATT +
Preference number: 5 (lower is better)
Translates to: LGWPIWVLCLCRSRI*SARNSSTSGRSLYI
Trigger: AATATATAAGCTTCGCCCAGAAGTGGATGAATTACGTGCTGACCAAATGCGAGAGCGGCAGAGGCACAAGACCCAGATGGGCCACCCAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CCA 90 bp CAGGTTCAATGGCTTGTAGGAAATCAAATCCTTGGGTGGCCCATCTaGGTCTTGTGCCTCTGCCGCTCTCGCATTTGGTCAGCACGTAAT +
Preference number: 5 (lower is better)
Translates to: QVQWLVGNQILGWPI*VLCLCRSRIWSARN
Trigger: ATTACGTGCTGACCAAATGCGAGAGCGGCAGAGGCACAAGACCCAGATGGGCCACCCAAGGATTTGATTTCCTACAAGCCATTGAACCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CCA 90 bp CTCATCTCTCGATACCTCCTCTCTTCAAACAGTCGGACTGACTTCTaGATAGCTTCTATGGGCCCCTGCTTAGAGGCCGAGTCTTTGGTC +
Preference number: 5 (lower is better)
Translates to: LISRYLLSSNSRTDF*IASMGPCLEAESLV
Trigger: GACCAAAGACTCGGCCTCTAAGCAGGGGCCCATAGAAGCTATCCAGAAGTCAGTCCGACTGTTTGAAGAGAGGAGGTATCGAGAGATGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CAA 90 bp AACACTACATGTTCTTCTGAACCCCAGGAGCTCAAAAACACTGTGCTGATGACAGCTCTTCCGTGGGGCTaGAGTGCCGACTCAGAGACC +
Preference number: 5 (lower is better)
Translates to: NTTCSSEPQELKNTVLMTALPWG*SADSET
Trigger: GGTCTCTGAGTCGGCACTCAAGCCCCACGGAAGAGC...TGTCATCAGCACAGTGTTTTTGAGCTCCTGGGGTTCAGAAGAACATGTAGTGTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS GCA 90 bp TCTTCAAACAGTCGGACTGACTTCTGGATAGCTTCTATGGGCCCCTaGTTAGAGGCCGAGTCTTTGGTCTGGCTGATGAGTGTTCGAAGT +
Preference number: 5 (lower is better)
Translates to: SSNSRTDFWIASMGP*LEAESLVWLMSVRS
Trigger: ACTTCGAACACTCATCAGCCAGACCAAAGACTCGGCCTCTAAGCAGGGGCCCATAGAAGCTATCCAGAAGTCAGTCCGACTGTTTGAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CAA 90 bp AACACTACATGTTCTTCTGAACCCCAGGAGCTCAAAAACACTGTGCTGATGACAACGGGCAGCTTGGCATaGCTACAGCCGAGACTGAGG +
Preference number: 5 (lower is better)
Translates to: NTTCSSEPQELKNTVLMTTGSLA*LQPRLR
Trigger: CCTCAGTCTCGGCTGTAGCAATGCCAAGCTGCCCGT...TGTCATCAGCACAGTGTTTTTGAGCTCCTGGGGTTCAGAAGAACATGTAGTGTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CAA 90 bp CAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTGAAATCAAGTGCATCGTTCTaGAGCTGCTGCAAACCTTTG +
Preference number: 5 (lower is better)
Translates to: QLSNKEAPQSEPTTRRLKSSASF*SCCKPL
Trigger: CAAAGGTTTGCAGCAGCTCAAGAACGATGCACTTGA...TTTCAACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CAA 90 bp CTTTTCTTCAGCTTCACTTACGAGCCTTTGCATAACAAACCTGCAGCTTTCGAAGCAGCAGCAACAGAGTaGCCATGGGTCCGAGCGTCG +
Preference number: 5 (lower is better)
Translates to: LFFSFTYEPLHNKPAAFEAAATE*PWVRAS
Trigger: CGACGCTCGGACCCATGGCAACTCTGTTGCTGCTGC...TTCGAAAGCTGCAGGTTTGTTATGCAAAGGCTCGTAAGTGAAGCTGAAGAAAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089058.7
CDS-3UTR CAA 90 bp CAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTGAAAAGGGGTATCGCACACTaGGCCGATGATATTCTTTCT +
Preference number: 5 (lower is better)
Translates to: QLSNKEAPQSEPTTRRLKRGIAH*ADDILS
Trigger: AGAAAGAATATCATCGGCCAAGTGTGCGATACCCCT...TTTCAACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CAA 90 bp TTTAACCTCAGCACTGTCACTCAGCAGGCGACAGGAGCAGCAGAAGTGAGGCTTAGGGGTATCGCACACTaGGCCGATGATATTCTTTCT +
Preference number: 5 (lower is better)
Translates to: FNLSTVTQQATGAAEVRLRGIAH*ADDILS
Trigger: AGAAAGAATATCATCGGCCAAGTGTGCGATACCCCT...AAGCCTCACTTCTGCTGCTCCTGTCGCCTGCTGAGTGACAGTGCTGAGGTTAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CAA 90 bp TGGCACTTAACGTGCGGCTCCTTTAACCTCAGCACTGTCACTCAGCAGGCGACAACCAGGTTGGGGTGCTaGATGCCTTCAAATATTTTC +
Preference number: 5 (lower is better)
Translates to: WHLTCGSFNLSTVTQQATTRLGC*MPSNIF
Trigger: GAAAATATTTGAAGGCATCAAGCACCCCAACCTGGT...TGTCGCCTGCTGAGTGACAGTGCTGAGGTTAAAGGAGCCGCACGTTAAGTGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CAA 90 bp CAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTGAAAGCGACAGTGATCTGCTaGGTATATAACCTGATGACG +
Preference number: 5 (lower is better)
Translates to: QLSNKEAPQSEPTTRRLKATVIC*VYNLMT
Trigger: CGTCATCAGGTTATATACCAAGCAGATCACTGTCGC...TTTCAACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CAA 90 bp TGGCACTTAACGTGCGGCTCCTTTAACCTCAGCACTGTCACTCAGCAGGCGACACCAAAATCTCCCAGCTaGATTAGTCCAGATGACGTA +
Preference number: 5 (lower is better)
Translates to: WHLTCGSFNLSTVTQQATPKSPS*ISPDDV
Trigger: TACGTCATCTGGACTAATCAAGCTGGGAGATTTTGG...TGTCGCCTGCTGAGTGACAGTGCTGAGGTTAAAGGAGCCGCACGTTAAGTGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CAA 90 bp ACATGTTCTTCTGAACCCCAGGAGCTCAAAAACACTGTGCTGATGACACGGTTGTCATGCCAAGGCCGCTaGCCAGTCACCATCTCTATG +
Preference number: 5 (lower is better)
Translates to: TCSSEPQELKNTVLMTRLSCQGR*PVTISM
Trigger: CATAGAGATGGTGACTGGCAAGCGGCCTTGGCATGA...CAACCGTGTCATCAGCACAGTGTTTTTGAGCTCCTGGGGTTCAGAAGAACATGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS TCA 90 bp CCAGTCGTGACACCTCCTCTAGTGTACCCTCATCACAGTACTCCATaGAGATGTACATCTCTTCCCTGTGAAGCTCCACGCCAAAATACC +
Preference number: 5 (lower is better)
Translates to: PVVTPPLVYPHHSTP*RCTSLPCEAPRQNT
Trigger: GGTATTTTGGCGTGGAGCTTCACAGGGAAGAGATGTACATCTTCATGGAGTACTGTGATGAGGGTACACTAGAGGAGGTGTCACGACTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS GCA 90 bp TTTTGGCAAAGACCCAGCCACCGAGTCCAACATGAACGAGCACTGTaGATTTTTCTTATGGTCTCGCTCCGTTGTTCTCAGAGTTGCTCG +
Preference number: 5 (lower is better)
Translates to: FWQRPSHRVQHERAL*IFLMVSLRCSQSCS
Trigger: CGAGCAACTCTGAGAACAACGGAGCGAGACCATAAGAAAAATGCACAGTGCTCGTTCATGTTGGACTCGGTGGCTGGGTCTTTGCCAAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CAA 90 bp ACCTTTTCTTCAGCTTCACTTACGAGCCTTTGCATAACAAACCTGCAGCTTTCGTCTACCAAGGGCCCGTaGAAACCGGCTCCATTGCTG +
Preference number: 5 (lower is better)
Translates to: TFSSASLTSLCITNLQLSSTKGP*KPAPLL
Trigger: CAGCAATGGAGCCGGTTTCAACGGGCCCTTGGTAGA...CGAAAGCTGCAGGTTTGTTATGCAAAGGCTCGTAAGTGAAGCTGAAGAAAAGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CAA 90 bp CAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTGAAACTCATTCATCAGGGCTaGCAAACTCAAGAAGTCATC +
Preference number: 5 (lower is better)
Translates to: QLSNKEAPQSEPTTRRLKLIHQG*QTQEVI
Trigger: GATGACTTCTTGAGTTTGCAAGCCCTGATGAATGAG...TTTCAACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CAA 90 bp GGGAGGTTAGGAAGGCCGCCTGCGCTGCAGTCTTTATGTAAATATTACATACAGAAATACCGGACCAGGTaGGGGTGCTTGATGCCTTCA +
Preference number: 5 (lower is better)
Translates to: GRLGRPPALQSLCKYYIQKYRTR*GCLMPS
Trigger: TGAAGGCATCAAGCACCCCAACCTGGTCCGGTATTT...CTGTATGTAATATTTACATAAAGACTGCAGCGCAGGCGGCCTTCCTAACCTCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CAA 90 bp CAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTGAAAGGCATGGTCTGGGCGTaGTTTTTAAGTTTTACAGAG +
Preference number: 5 (lower is better)
Translates to: QLSNKEAPQSEPTTRRLKGMVWA*FLSFTE
Trigger: CTCTGTAAAACTTAAAAACAACGCCCAGACCATGCC...TTTCAACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS GCA 90 bp TTCGATCGGTTGAACCAGAAAGCAGCCGTGTTTTCTTGTCCCCTCTaGTCCCTGTCCTTCTTCTTCGAGACTGAGGTAAGCTTTAGCAAA +
Preference number: 5 (lower is better)
Translates to: FDRLNQKAAVFSCPL*SLSFFFETEVSFSK
Trigger: TTTGCTAAAGCTTACCTCAGTCTCGAAGAAGAAGGACAGGGAGCAGAGGGGACAAGAAAACACGGCTGCTTTCTGGTTCAACCGATCGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS GCA 90 bp AACACGTGCAAATTCTCTAACCCGGGAATCTGTACCTTAACATACTaGTTTGCTTTCAGAGCGTCCAGGAGCTCTCGGGCTGATGCAGAT +
Preference number: 5 (lower is better)
Translates to: NTCKFSNPGICTLTY*FAFRASRSSRADAD
Trigger: ATCTGCATCAGCCCGAGAGCTCCTGGACGCTCTGAAAGCAAAGCAGTATGTTAAGGTACAGATTCCCGGGTTAGAGAATTTGCACGTGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CCA 90 bp CAACTTCTTTATGATACTCAAACCCAAAGTTGTAGCCCTGAATCATaGCTTCTCGGTAGTACTGCTGCAGCGTGGCCGACTCAGACTCCT +
Preference number: 5 (lower is better)
Translates to: QLLYDTQTQSCSPES*LLGSTAAAWPTQTP
Trigger: AGGAGTCTGAGTCGGCCACGCTGCAGCAGTACTACCGAGAAGCCATGATTCAGGGCTACAACTTTGGGTTTGAGTATCATAAAGAAGTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CAA 90 bp TTCGAACAAGGAGGCTCCACAGTCAGAGCCAACGACCAGGAGGTTGAAATAAACAGCTACACGAGCTCTTaGCAAGGACCCATTCATAAG +
Preference number: 5 (lower is better)
Translates to: FEQGGSTVRANDQEVEINSYTSS*QGPIHK
Trigger: CTTATGAATGGGTCCTTGCAAAGAGCTCGTGTAGCT...GTTTATTTCAACCTCCTGGTCGTTGGCTCTGACTGTGGAGCCTCCTTGTTCGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CAA 90 bp AGTCCTGGGAGGTTAGGAAGGCCGCCTGCGCTGCAGTCTTTATGTAAATATTACTCAAGTGCATCGTTCTaGAGCTGCTGCAAACCTTTG +
Preference number: 5 (lower is better)
Translates to: SPGRLGRPPALQSLCKYYSSASF*SCCKPL
Trigger: CAAAGGTTTGCAGCAGCTCAAGAACGATGCACTTGA...GTAATATTTACATAAAGACTGCAGCGCAGGCGGCCTTCCTAACCTCCCAGGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CAA 90 bp AGTCCTGGGAGGTTAGGAAGGCCGCCTGCGCTGCAGTCTTTATGTAAATATTACGACGTAAGGAAGATATaGGCACCTTTGATGTCTCGG +
Preference number: 5 (lower is better)
Translates to: SPGRLGRPPALQSLCKYYDVRKI*APLMSR
Trigger: CCGAGACATCAAAGGTGCCAATATCTTCCTTACGTC...GTAATATTTACATAAAGACTGCAGCGCAGGCGGCCTTCCTAACCTCCCAGGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CCA 90 bp GGTGCCGTAGAGAGTCTCTGTATTTGTTTCATCAGAAAAGTCCTCTaGATCGGATTCCATACTTTTGCGAGCCGACTCTCCCAACATGCA +
Preference number: 5 (lower is better)
Translates to: GAVESLCICFIRKVL*IGFHTFASRLSQHA
Trigger: TGCATGTTGGGAGAGTCGGCTCGCAAAAGTATGGAATCCGATCCAGAGGACTTTTCTGATGAAACAAATACAGAGACTCTCTACGGCACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000089058.7
ENSMUST00000233002.2
ENSMUST00000233755.2
CDS-3UTR CAA 90 bp GGGAGGTTAGGAAGGCCGCCTGCGCTGCAGTCTTTATGTAAATATTACATACAGAGCTACACGAGCTCTTaGCAAGGACCCATTCATAAG +
Preference number: 5 (lower is better)
Translates to: GRLGRPPALQSLCKYYIQSYTSS*QGPIHK
Trigger: CTTATGAATGGGTCCTTGCAAAGAGCTCGTGTAGCT...CTGTATGTAATATTTACATAAAGACTGCAGCGCAGGCGGCCTTCCTAACCTCCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CAA 90 bp CTTTATGTAAATATTACATACAGTAGTGATCACGGGATTCTGTCCACACACTACGCAAAGCCCAGGGCCTaGGAGGCTCTTTCCCTGGCT +
Preference number: 5 (lower is better)
Translates to: LYVNITYSSDHGILSTHYAKPRA*EALSLA
Trigger: AGCCAGGGAAAGAGCCTCCAAGGCCCTGGGCTTTGC...GTAGTGTGTGGACAGAATCCCGTGATCACTACTGTATGTAATATTTACATAAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CAA 90 bp TTTAACCTCAGCACTGTCACTCAGCAGGCGACAGGAGCAGCAGAAGTGAGGCTTTTTCCTGTGGCAGCATaGAGTAGCTGCAAAATAATT +
Preference number: 5 (lower is better)
Translates to: FNLSTVTQQATGAAEVRLFPVAA*SSCKII
Trigger: AATTATTTTGCAGCTACTCAATGCTGCCACAGGAAA...AAGCCTCACTTCTGCTGCTCCTGTCGCCTGCTGAGTGACAGTGCTGAGGTTAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CAA 90 bp GAGCCTTTGCATAACAAACCTGCAGCTTTCGAACAAGGAGGCTCCACAGTCAGAACCAGGTTGGGGTGCTaGATGCCTTCAAATATTTTC +
Preference number: 5 (lower is better)
Translates to: EPLHNKPAAFEQGGSTVRTRLGC*MPSNIF
Trigger: GAAAATATTTGAAGGCATCAAGCACCCCAACCTGGT...TCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGCAGGTTTGTTATGCAAAGGCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CAA 90 bp ACATGTTCTTCTGAACCCCAGGAGCTCAAAAACACTGTGCTGATGACACGGTTGGCGACAGTGATCTGCTaGGTATATAACCTGATGACG +
Preference number: 5 (lower is better)
Translates to: TCSSEPQELKNTVLMTRLATVIC*VYNLMT
Trigger: CGTCATCAGGTTATATACCAAGCAGATCACTGTCGC...CAACCGTGTCATCAGCACAGTGTTTTTGAGCTCCTGGGGTTCAGAAGAACATGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CAA 90 bp TTTAACCTCAGCACTGTCACTCAGCAGGCGACAGGAGCAGCAGAAGTGAGGCTTAGAGAGTCTCTGTATTaGTTTCATCAGAAAAGTCCT +
Preference number: 5 (lower is better)
Translates to: FNLSTVTQQATGAAEVRLRESLY*FHQKSP
Trigger: AGGACTTTTCTGATGAAACAAATACAGAGACTCTCT...AAGCCTCACTTCTGCTGCTCCTGTCGCCTGCTGAGTGACAGTGCTGAGGTTAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS GCA 90 bp GACCAGGTTGGGGTGCTTGATGCCTTCAAATATTTTCAACTCGTCTaGAGTCTCCTTGATAGTCTTGTGGTCGTTAGGCTGAAATCGAAT +
Preference number: 5 (lower is better)
Translates to: DQVGVLDAFKYFQLV*SLLDSLVVVRLKSN
Trigger: ATTCGATTTCAGCCTAACGACCACAAGACTATCAAGGAGACTGCAGACGAGTTGAAAATATTTGAAGGCATCAAGCACCCCAACCTGGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CAA 90 bp CCTTTGCATAACAAACCTGCAGCTTTCGAACAAGGAGGCTCCACAGTCAGAGCCAGAGAGTCTCTGTATTaGTTTCATCAGAAAAGTCCT +
Preference number: 5 (lower is better)
Translates to: PLHNKPAAFEQGGSTVRARESLY*FHQKSP
Trigger: AGGACTTTTCTGATGAAACAAATACAGAGACTCTCT...GGCTCTGACTGTGGAGCCTCCTTGTTCGAAAGCTGCAGGTTTGTTATGCAAAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CAA 90 bp AGTCCTGGGAGGTTAGGAAGGCCGCCTGCGCTGCAGTCTTTATGTAAATATTACTTTCCTGTGGCAGCATaGAGTAGCTGCAAAATAATT +
Preference number: 5 (lower is better)
Translates to: SPGRLGRPPALQSLCKYYFPVAA*SSCKII
Trigger: AATTATTTTGCAGCTACTCAATGCTGCCACAGGAAA...GTAATATTTACATAAAGACTGCAGCGCAGGCGGCCTTCCTAACCTCCCAGGACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CAA 90 bp GGGAGGTTAGGAAGGCCGCCTGCGCTGCAGTCTTTATGTAAATATTACATACAGGCGAAGCTTATATATTaGTCTCCTATCTTCTGCCTG +
Preference number: 5 (lower is better)
Translates to: GRLGRPPALQSLCKYYIQAKLIY*SPIFCL
Trigger: CAGGCAGAAGATAGGAGACAAATATATAAGCTTCGC...CTGTATGTAATATTTACATAAAGACTGCAGCGCAGGCGGCCTTCCTAACCTCCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CAA 90 bp ACCTTTTCTTCAGCTTCACTTACGAGCCTTTGCATAACAAACCTGCAGCTTTCGTCGTCTGCAGTCTCCTaGATAGTCTTGTGGTCGTTA +
Preference number: 5 (lower is better)
Translates to: TFSSASLTSLCITNLQLSSSAVS*IVLWSL
Trigger: TAACGACCACAAGACTATCAAGGAGACTGCAGACGA...CGAAAGCTGCAGGTTTGTTATGCAAAGGCTCGTAAGTGAAGCTGAAGAAAAGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CAA 90 bp AACACTACATGTTCTTCTGAACCCCAGGAGCTCAAAAACACTGTGCTGATGACAGACGTAAGGAAGATATaGGCACCTTTGATGTCTCGG +
Preference number: 5 (lower is better)
Translates to: NTTCSSEPQELKNTVLMTDVRKI*APLMSR
Trigger: CCGAGACATCAAAGGTGCCAATATCTTCCTTACGTC...TGTCATCAGCACAGTGTTTTTGAGCTCCTGGGGTTCAGAAGAACATGTAGTGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS-3UTR CAA 90 bp CTTTTCTTCAGCTTCACTTACGAGCCTTTGCATAACAAACCTGCAGCTTTCGAATCGTCTGCAGTCTCCTaGATAGTCTTGTGGTCGTTA +
Preference number: 5 (lower is better)
Translates to: LFFSFTYEPLHNKPAAFESSAVS*IVLWSL
Trigger: TAACGACCACAAGACTATCAAGGAGACTGCAGACGA...TTCGAAAGCTGCAGGTTTGTTATGCAAAGGCTCGTAAGTGAAGCTGAAGAAAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS TCA 90 bp ACCAGAGCTACACGAGCTCTTTGCAAGGACCCATTCATAAGCTTATaGAGTCGTAAAATTAACTTTCTTAGCCCCATTTGCTTCAGTGCT +
Preference number: 5 (lower is better)
Translates to: TRATRALCKDPFISL*SRKINFLSPICFSA
Trigger: AGCACTGAAGCAAATGGGGCTAAGAAAGTTAATTTTACGACTTCATAAGCTTATGAATGGGTCCTTGCAAAGAGCTCGTGTAGCTCTGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS TCA 90 bp TCCACTTCTGGGCGAAGCTTATATATTTGTCTCCTATCTTCTGCCTaGATTCCCCAGACATCAAACGAACAACTTCTTTATGATACTCAA +
Preference number: 5 (lower is better)
Translates to: STSGRSLYICLLSSA*IPQTSNEQLLYDTQ
Trigger: TTGAGTATCATAAAGAAGTTGTTCGTTTGATGTCTGGGGAATTCAGGCAGAAGATAGGAGACAAATATATAAGCTTCGCCCAGAAGTGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS GCA 72 bp TGGCGGCGGTGCTGGCCGCAGCTCCTCCATGGCGGCTaGAGGGGTGTCGGCGAGGGCAGGAGGGGGCACCGG +
Preference number: 6 (lower is better)
Translates to: WRRCWPQLLHGG*RGVGEGRRGHR
Trigger: CCGGTGCCCCCTCCTGCCCTCGCCGACACCCCTGCAGCCGCCATGGAGGAGCTGCGGCCAGCACCGCCGCCA
78% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS GCA 72 bp GCAGCACTCCGGATCCGGCTCGGGCTGTGGCGGCGGTaGTGGCCGCAGCTCCTCCATGGCGGCTGCAGGGGT +
Preference number: 6 (lower is better)
Translates to: AALRIRLGLWRR*WPQLLHGGCRG
Trigger: ACCCCTGCAGCCGCCATGGAGGAGCTGCGGCCAGCACCGCCGCCACAGCCCGAGCCGGATCCGGAGTGCTGC
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CCA 72 bp AGCCGACTCTCCCAACATGCACTCCTGCCTCGCCGCTaGGCAGCACTCCGGATCCGGCTCGGGCTGTGGCGG +
Preference number: 6 (lower is better)
Translates to: SRLSQHALLPRR*AALRIRLGLWR
Trigger: CCGCCACAGCCCGAGCCGGATCCGGAGTGCTGCCCAGCGGCGAGGCAGGAGTGCATGTTGGGAGAGTCGGCT
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CCA 72 bp CACCACCACCTGGGCCAGGGCGGCCAGCAGCAGTGGTaGCGGCGGCAGCAACAGCAGCAGCAGCAGCAACAG +
Preference number: 6 (lower is better)
Translates to: HHHLGQGGQQQW*RRQQQQQQQQQ
Trigger: CTGTTGCTGCTGCTGCTGCTGTTGCTGCCGCCGCCACCACTGCTGCTGGCCGCCCTGGCCCAGGTGGTGGTG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089058.7
CDS GCA 72 bp CGGCGGCAGCAACAGCAGCAGCAGCAGCAACAGAGTTaGCATGGGTCCGAGCGTCGGAAGGCACGCTCCGGG +
Preference number: 6 (lower is better)
Translates to: RRQQQQQQQQQS*HGSERRKARSG
Trigger: CCCGGAGCGTGCCTTCCGACGCTCGGACCCATGGCAACTCTGTTGCTGCTGCTGCTGCTGTTGCTGCCGCCG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089058.7
CDS CAA 72 bp GCGGCGGCAGCAACAGCAGCAGCAGCAGCAACAGAGTaGCCATGGGTCCGAGCGTCGGAAGGCACGCTCCGG +
Preference number: 6 (lower is better)
Translates to: AAAATAAAAATE*PWVRASEGTLR
Trigger: CCGGAGCGTGCCTTCCGACGCTCGGACCCATGGCAACTCTGTTGCTGCTGCTGCTGCTGTTGCTGCCGCCGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089058.7
CDS TCA 72 bp GGCCGGCCTCCCTGCGCTGTTCCTCTGGTGCTTGGCTaGCAGGCGTTTCATCTGTCGAGGTGTGCTTGGGGG +
Preference number: 6 (lower is better)
Translates to: GRPPCAVPLVLG*QAFHLSRCAWG
Trigger: CCCCCAAGCACACCTCGACAGATGAAACGCCTGTCAGCCAAGCACCAGAGGAACAGCGCAGGGAGGCCGGCC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000089058.7
ENSMUST00000233002.2
ENSMUST00000233012.2
ENSMUST00000233755.2
CDS TCA 72 bp GGGAGCGACTGTCCAAGATGGCGTCTGTGGACAGCCTaGGCTCTGGCACCCTCGGACTGGGGGTTGGCTCCT +
Preference number: 6 (lower is better)
Translates to: GSDCPRWRLWTA*ALAPSDWGLAP
Trigger: AGGAGCCAACCCCCAGTCCGAGGGTGCCAGAGCTCAGGCTGTCCACAGACGCCATCTTGGACAGTCGCTCCC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CCA 72 bp CCGTGTCCTCGACCTCGTCCTCTGGCTCGTAGCCCTTaGACGGCCGAGGGGAGGGGATTTCAAACACTGGCC +
Preference number: 6 (lower is better)
Translates to: PCPRPRPLARSP*TAEGRGFQTLA
Trigger: GGCCAGTGTTTGAAATCCCCTCCCCTCGGCCGTCCAAGGGCTACGAGCCAGAGGACGAGGTCGAGGACACGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CCA 72 bp GCAGCAACAGCAGCAGCAGCAGCAACAGAGTTGCCATaGGTCCGAGCGTCGGAAGGCACGCTCCGGGTGCTG +
Preference number: 6 (lower is better)
Translates to: AATAAAAATELP*VRASEGTLRVL
Trigger: CAGCACCCGGAGCGTGCCTTCCGACGCTCGGACCCATGGCAACTCTGTTGCTGCTGCTGCTGCTGTTGCTGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089058.7
CDS CCA 72 bp ACCCCTGGTATCAGGGGCAGTGTTGACAGGTTTGGCTaGCACAGAGTCACCACCACCTGGGCCAGGGCGGCC +
Preference number: 6 (lower is better)
Translates to: TPGIRGSVDRFG*HRVTTTWARAA
Trigger: GGCCGCCCTGGCCCAGGTGGTGGTGACTCTGTGCCAGCCAAACCTGTCAACACTGCCCCTGATACCAGGGGT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089058.7
CDS TCA 72 bp GACAGCCCGAGCTTCCCATGTGCCCCAGCCATCTTCTaGGTCACGGGCTCGGTCCCCATGCTTGGTCAGGAG +
Preference number: 6 (lower is better)
Translates to: DSPSFPCAPAIF*VTGSVPMLGQE
Trigger: CTCCTGACCAAGCATGGGGACCGAGCCCGTGACTCAGAAGATGGCTGGGGCACATGGGAAGCTCGGGCTGTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CCA 72 bp GGCTGGCCGGCCTCCCTGCGCTGTTCCTCTGGTGCTTaGCTGACAGGCGTTTCATCTGTCGAGGTGTGCTTG +
Preference number: 6 (lower is better)
Translates to: GWPASLRCSSGA*LTGVSSVEVCL
Trigger: CAAGCACACCTCGACAGATGAAACGCCTGTCAGCCAAGCACCAGAGGAACAGCGCAGGGAGGCCGGCCAGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000089058.7
ENSMUST00000233002.2
ENSMUST00000233012.2
ENSMUST00000233755.2
CDS CAA 90 bp TCAGGGACACTGGAACCCCTGGTATCAGGGGCAGTGTTGACAGGTTaGGCTGGCACAGAGTCACCACCACCTGGGCCAGGGCGGCCAGCA +
Preference number: 6 (lower is better)
Translates to: SGTLEPLVSGAVLTG*AGTESPPPGPGRPA
Trigger: TGCTGGCCGCCCTGGCCCAGGTGGTGGTGACTCTGTGCCAGCCAAACCTGTCAACACTGCCCCTGATACCAGGGGTTCCAGTGTCCCTGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089058.7
CDS CAA 90 bp CGGCTGATCTCGATGACAGATCTCCTTAGCTCGTCGGCAGCACCGTaGTCGTCGGCGCTGGTCCACAGCTCAGCACAGCTCTCCTGCAGG +
Preference number: 6 (lower is better)
Translates to: RLISMTDLLSSSAAP*SSALVHSSAQLSCR
Trigger: CCTGCAGGAGAGCTGTGCTGAGCTGTGGACCAGCGCCGACGACAACGGTGCTGCCGACGAGCTAAGGAGATCTGTCATCGAGATCAGCCG
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS TCA 72 bp CCTGGCGGGCTGTGTAGAGAAAGAGGTCCTGGTCATTaGTGGTGCGGCCCGCGTGCCAGGCCTGCAGTTCTA +
Preference number: 6 (lower is better)
Translates to: PGGLCRERGPGH*WCGPRARPAVL
Trigger: TAGAACTGCAGGCCTGGCACGCGGGCCGCACCATCAATGACCAGGACCTCTTTCTCTACACAGCCCGCCAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS TCA 72 bp CGAGACCCTCTGGCGCTGGAGGTGCTCGTGGTACGATaGGCAGCCCACACGGTTTGTCTCCTGAGGGGTTCT +
Preference number: 6 (lower is better)
Translates to: RDPLALEVLVVR*AAHTVCLLRGS
Trigger: AGAACCCCTCAGGAGACAAACCGTGTGGGCTGCTCATCGTACCACGAGCACCTCCAGCGCCAGAGGGTCTCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS TCA 72 bp CGGGTGCTGAATCCCTCTGGAGTCGGGATGATGAGGTaGGGGTTAGGAGGGTCACTGTGGCATCGGGGCACC +
Preference number: 6 (lower is better)
Translates to: RVLNPSGVGMMR*GLGGSLWHRGT
Trigger: GGTGCCCCGATGCCACAGTGACCCTCCTAACCCTCACCTCATCATCCCGACTCCAGAGGGATTCAGCACCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089058.7
CDS CCA 72 bp TTCGATCGGCTGGCCGGCCTCCCTGCGCTGTTCCTCTaGTGCTTGGCTGACAGGCGTTTCATCTGTCGAGGT +
Preference number: 6 (lower is better)
Translates to: FDRLAGLPALFL*CLADRRFICRG
Trigger: ACCTCGACAGATGAAACGCCTGTCAGCCAAGCACCAGAGGAACAGCGCAGGGAGGCCGGCCAGCCGATCGAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000089058.7
ENSMUST00000233002.2
ENSMUST00000233012.2
ENSMUST00000233755.2
CDS CCA 72 bp ATCCGCTTCACCTGCTCAAACGAGACCCTCTGGCGCTaGAGGTGCTCGTGGTACGATGAGCAGCCCACACGG +
Preference number: 6 (lower is better)
Translates to: IRFTCSNETLWR*RCSWYDEQPTR
Trigger: CCGTGTGGGCTGCTCATCGTACCACGAGCACCTCCAGCGCCAGAGGGTCTCGTTTGAGCAGGTGAAGCGGAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CCA 72 bp AGCGTCGGAAGGCACGCTCCGGGTGCTGAATCCCTCTaGAGTCGGGATGATGAGGTGAGGGTTAGGAGGGTC +
Preference number: 6 (lower is better)
Translates to: SVGRHAPGAESL*SRDDEVRVRRV
Trigger: GACCCTCCTAACCCTCACCTCATCATCCCGACTCCAGAGGGATTCAGCACCCGGAGCGTGCCTTCCGACGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089058.7
CDS CAA 72 bp CTGGAACCCCTGGTATCAGGGGCAGTGTTGACAGGTTaGGCTGGCACAGAGTCACCACCACCTGGGCCAGGG +
Preference number: 6 (lower is better)
Translates to: LEPLVSGAVLTG*AGTESPPPGPG
Trigger: CCCTGGCCCAGGTGGTGGTGACTCTGTGCCAGCCAAACCTGTCAACACTGCCCCTGATACCAGGGGTTCCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089058.7
CDS TCA 72 bp TCGTGGTACGATGAGCAGCCCACACGGTTTGTCTCCTaGGGGGTTCTGCACTGGCCTTCTACCAAGGGCCCG +
Preference number: 6 (lower is better)
Translates to: SWYDEQPTRFVS*GVLHWPSTKGP
Trigger: CGGGCCCTTGGTAGAAGGCCAGTGCAGAACCCCTCAGGAGACAAACCGTGTGGGCTGCTCATCGTACCACGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS TCA 72 bp ACAGTCCGCTGTCCCCCAGCCTATGGAATCTTCCTCTaGCTCGAGCCTCTCCAGCTTCCTGGAGACGCAGCC +
Preference number: 6 (lower is better)
Translates to: TVRCPPAYGIFL*LEPLQLPGDAA
Trigger: GGCTGCGTCTCCAGGAAGCTGGAGAGGCTCGAGTCAGAGGAAGATTCCATAGGCTGGGGGACAGCGGACTGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS GCA 72 bp CGGATTCCATACTTTTGCGAGCCGACTCTCCCAACATaGACTCCTGCCTCGCCGCTGGGCAGCACTCCGGAT +
Preference number: 6 (lower is better)
Translates to: RIPYFCEPTLPT*TPASPLGSTPD
Trigger: ATCCGGAGTGCTGCCCAGCGGCGAGGCAGGAGTGCATGTTGGGAGAGTCGGCTCGCAAAAGTATGGAATCCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS GCA 72 bp CCCCAGCCATCTTCTGAGTCACGGGCTCGGTCCCCATaGTTGGTCAGGAGCAGGAAGGCATCCATGAAGACG +
Preference number: 6 (lower is better)
Translates to: PQPSSESRARSP*LVRSRKASMKT
Trigger: CGTCTTCATGGATGCCTTCCTGCTCCTGACCAAGCATGGGGACCGAGCCCGTGACTCAGAAGATGGCTGGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CCA 72 bp TCCGGGAAGTCTGCCGTGCAGTTCTGGCTATCGGCATaGGCATCGAGACGGGCAGCTTGGCATTGCTACAGC +
Preference number: 6 (lower is better)
Translates to: SGKSAVQFWLSA*ASRRAAWHCYS
Trigger: GCTGTAGCAATGCCAAGCTGCCCGTCTCGATGCCCATGCCGATAGCCAGAACTGCACGGCAGACTTCCCGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CAA 72 bp TCGATGACAGATCTCCTTAGCTCGTCGGCAGCACCGTaGTCGTCGGCGCTGGTCCACAGCTCAGCACAGCTC +
Preference number: 6 (lower is better)
Translates to: SMTDLLSSSAAP*SSALVHSSAQL
Trigger: GAGCTGTGCTGAGCTGTGGACCAGCGCCGACGACAACGGTGCTGCCGACGAGCTAAGGAGATCTGTCATCGA
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CAA 90 bp CATGTGCCCCAGCCATCTTCTGAGTCACGGGCTCGGTCCCCATGCTaGGTCAGGAGCAGGAAGGCATCCATGAAGACGTCGTCTGGATCC +
Preference number: 6 (lower is better)
Translates to: HVPQPSSESRARSPC*VRSRKASMKTSSGS
Trigger: GGATCCAGACGACGTCTTCATGGATGCCTTCCTGCTCCTGACCAAGCATGGGGACCGAGCCCGTGACTCAGAAGATGGCTGGGGCACATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS TCA 72 bp GAGGGGTTCTGCACTGGCCTTCTACCAAGGGCCCGTTaGAACCGGCTCCATTGCTGGAGAAGGCAATGCTCC +
Preference number: 6 (lower is better)
Translates to: EGFCTGLLPRAR*NRLHCWRRQCS
Trigger: GGAGCATTGCCTTCTCCAGCAATGGAGCCGGTTTCAACGGGCCCTTGGTAGAAGGCCAGTGCAGAACCCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS TCA 72 bp CGGTCTTCTCCAGTCCGCCCAGGACCTCCTGCAGCATaGACTGGTAATACTGCTTCATCAGGAGCCCGCCCT +
Preference number: 6 (lower is better)
Translates to: RSSPVRPGPPAA*TGNTASSGARP
Trigger: AGGGCGGGCTCCTGATGAAGCAGTATTACCAGTTCATGCTGCAGGAGGTCCTGGGCGGACTGGAGAAGACCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS TCA 72 bp CAGGGACACTGGAACCCCTGGTATCAGGGGCAGTGTTaGCAGGTTTGGCTGGCACAGAGTCACCACCACCTG +
Preference number: 6 (lower is better)
Translates to: QGHWNPWYQGQC*QVWLAQSHHHL
Trigger: CAGGTGGTGGTGACTCTGTGCCAGCCAAACCTGTCAACACTGCCCCTGATACCAGGGGTTCCAGTGTCCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089058.7
CDS TCA 72 bp GCTCTTCCGTGGGGCTTGAGTGCCGACTCAGAGACCTaGACTGCAGTTCTGCAGCTATGGAGGCCAAGCGGT +
Preference number: 6 (lower is better)
Translates to: ALPWGLSADSET*TAVLQLWRPSG
Trigger: ACCGCTTGGCCTCCATAGCTGCAGAACTGCAGTTCAGGTCTCTGAGTCGGCACTCAAGCCCCACGGAAGAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS TCA 72 bp AGGATACGCTGGCTCGTCTCGCTCTTCCGTGGGGCTTaGGTGCCGACTCAGAGACCTGAACTGCAGTTCTGC +
Preference number: 6 (lower is better)
Translates to: RIRWLVSLFRGA*VPTQRPELQFC
Trigger: GCAGAACTGCAGTTCAGGTCTCTGAGTCGGCACTCAAGCCCCACGGAAGAGCGAGACGAGCCAGCGTATCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS GCA 72 bp TTCACCTGCTCAAACGAGACCCTCTGGCGCTGGAGGTaGTCGTGGTACGATGAGCAGCCCACACGGTTTGTC +
Preference number: 6 (lower is better)
Translates to: FTCSNETLWRWR*SWYDEQPTRFV
Trigger: GACAAACCGTGTGGGCTGCTCATCGTACCACGAGCACCTCCAGCGCCAGAGGGTCTCGTTTGAGCAGGTGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS GCA 72 bp TACGCTGGCTCGTCTCGCTCTTCCGTGGGGCTTGAGTaGCGACTCAGAGACCTGAACTGCAGTTCTGCAGCT +
Preference number: 6 (lower is better)
Translates to: YAGSSRSSVGLE*RLRDLNCSSAA
Trigger: AGCTGCAGAACTGCAGTTCAGGTCTCTGAGTCGGCACTCAAGCCCCACGGAAGAGCGAGACGAGCCAGCGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS GCA 72 bp CATCTCTATGACGACGCACCCCAGACTCCAGATATCTaGCGCACGTCCGTGGCCTTCTCCTTTGGCTCGGGT +
Preference number: 6 (lower is better)
Translates to: HLYDDAPQTPDI*RTSVAFSFGSG
Trigger: ACCCGAGCCAAAGGAGAAGGCCACGGACGTGCGGCAGATATCTGGAGTCTGGGGTGCGTCGTCATAGAGATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CCA 72 bp TCCATTATCCGCTTCACCTGCTCAAACGAGACCCTCTaGCGCTGGAGGTGCTCGTGGTACGATGAGCAGCCC +
Preference number: 6 (lower is better)
Translates to: SIIRFTCSNETL*RWRCSWYDEQP
Trigger: GGGCTGCTCATCGTACCACGAGCACCTCCAGCGCCAGAGGGTCTCGTTTGAGCAGGTGAAGCGGATAATGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CAA 72 bp CAGCCATCTTCTGAGTCACGGGCTCGGTCCCCATGCTaGGTCAGGAGCAGGAAGGCATCCATGAAGACGTCG +
Preference number: 6 (lower is better)
Translates to: QPSSESRARSPC*VRSRKASMKTS
Trigger: CGACGTCTTCATGGATGCCTTCCTGCTCCTGACCAAGCATGGGGACCGAGCCCGTGACTCAGAAGATGGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CAA 90 bp CCCAGGGCCTTGGAGGCTCTTTCCCTGGCTTCGTGGAAGAGCTCCTaGAGTGCTCGGCTGATCTCGATGACAGATCTCCTTAGCTCGTCG +
Preference number: 6 (lower is better)
Translates to: PRALEALSLASWKSS*SARLISMTDLLSSS
Trigger: CGACGAGCTAAGGAGATCTGTCATCGAGATCAGCCGAGCACTCAAGGAGCTCTTCCACGAAGCCAGGGAAAGAGCCTCCAAGGCCCTGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS TCA 72 bp ACTCATGCCAAGGCCGCTTGCCAGTCACCATCTCTATaGCGACGCACCCCAGACTCCAGATATCTGCCGCAC +
Preference number: 6 (lower is better)
Translates to: THAKAACQSPSL*RRTPDSRYLPH
Trigger: GTGCGGCAGATATCTGGAGTCTGGGGTGCGTCGTCATAGAGATGGTGACTGGCAAGCGGCCTTGGCATGAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS GCA 72 bp TCCTGGTCATTGATGGTGCGGCCCGCGTGCCAGGCCTaGAGTTCTAACCAGATCAGTTCGTTCGATCGGTTG +
Preference number: 6 (lower is better)
Translates to: SWSLMVRPACQA*SSNQISSFDRL
Trigger: CAACCGATCGAACGAACTGATCTGGTTAGAACTGCAGGCCTGGCACGCGGGCCGCACCATCAATGACCAGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS GCA 72 bp TCCATGTACTCCAGCAGCTCCATTATCCGCTTCACCTaGTCAAACGAGACCCTCTGGCGCTGGAGGTGCTCG +
Preference number: 6 (lower is better)
Translates to: SMYSSSSIIRFT*SNETLWRWRCS
Trigger: CGAGCACCTCCAGCGCCAGAGGGTCTCGTTTGAGCAGGTGAAGCGGATAATGGAGCTGCTGGAGTACATGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CCA 72 bp ACAGGCAGAGCGCCTGCACTCTGTCCTCAAAGTCCTTaGCGGCGTACCGTTCATAGTCCTTCTGCAGAGCCT +
Preference number: 6 (lower is better)
Translates to: TGRAPALCPQSP*RRTVHSPSAEP
Trigger: AGGCTCTGCAGAAGGACTATGAACGGTACGCCGCCAAGGACTTTGAGGACAGAGTGCAGGCGCTCTGCCTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CCA 72 bp GCCCCACATGGGACCTGGAAAGTCAGAGAACTCCACTaGACGGTCGTCCTTCACCAGAGCTACACGAGCTCT +
Preference number: 6 (lower is better)
Translates to: APHGTWKVRELH*TVVLHQSYTSS
Trigger: AGAGCTCGTGTAGCTCTGGTGAAGGACGACCGTCCAGTGGAGTTCTCTGACTTTCCAGGTCCCATGTGGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CCA 72 bp ACGCACCCCAGACTCCAGATATCTGCCGCACGTCCGTaGCCTTCTCCTTTGGCTCGGGTAATAACTTCAGGG +
Preference number: 6 (lower is better)
Translates to: THPRLQISAARP*PSPLARVITSG
Trigger: CCCTGAAGTTATTACCCGAGCCAAAGGAGAAGGCCACGGACGTGCGGCAGATATCTGGAGTCTGGGGTGCGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CAA 90 bp TACACCATCAGCATCTTCTGCAGGTCCTCCTCAAAGGCATCCATGTaGCAGTCGGTCTTCTCCAGTCCGCCCAGGACCTCCTGCAGCATG +
Preference number: 6 (lower is better)
Translates to: YTISIFCRSSSKASM*QSVFSSPPRTSCSM
Trigger: CATGCTGCAGGAGGTCCTGGGCGGACTGGAGAAGACCGACTGCAACATGGATGCCTTTGAGGAGGACCTGCAGAAGATGCTGATGGTGTA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS TCA 72 bp TCAGGGTGTCCACAGTCTCCACCTGAGGCACAATTTTaGCAGCCCGAGCTTCCCATGTGCCCCAGCCATCTT +
Preference number: 6 (lower is better)
Translates to: SGCPQSPPEAQF*QPELPMCPSHL
Trigger: AAGATGGCTGGGGCACATGGGAAGCTCGGGCTGTCAAAATTGTGCCTCAGGTGGAGACTGTGGACACCCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS GCA 72 bp GGTGCTTGGCTGACAGGCGTTTCATCTGTCGAGGTGTaGTTGGGGGTGAGGTGCCGTAGAGAGTCTCTGTAT +
Preference number: 6 (lower is better)
Translates to: GAWLTGVSSVEV*LGVRCRRESLY
Trigger: ATACAGAGACTCTCTACGGCACCTCACCCCCAAGCACACCTCGACAGATGAAACGCCTGTCAGCCAAGCACC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000089058.7
ENSMUST00000233002.2
ENSMUST00000233012.2
ENSMUST00000233755.2
CDS GCA 72 bp AGAAAGAGGTCCTGGTCATTGATGGTGCGGCCCGCGTaGCAGGCCTGCAGTTCTAACCAGATCAGTTCGTTC +
Preference number: 6 (lower is better)
Translates to: RKRSWSLMVRPA*QACSSNQISSF
Trigger: GAACGAACTGATCTGGTTAGAACTGCAGGCCTGGCACGCGGGCCGCACCATCAATGACCAGGACCTCTTTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CCA 72 bp CCTTTGGCGATGATGGGCTGGCTAGATGTCTGCTCATaGCGTACAGTCATCAGCCCCTCAATGGACTGCTGG +
Preference number: 6 (lower is better)
Translates to: PLAMMGWLDVCS*RTVISPSMDCW
Trigger: CCAGCAGTCCATTGAGGGGCTGATGACTGTACGCCATGAGCAGACATCTAGCCAGCCCATCATCGCCAAAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CCA 72 bp CCTGAATCATGGCTTCTCGGTAGTACTGCTGCAGCGTaGCCGACTCAGACTCCTCGACCTCAGCATCGAACT +
Preference number: 6 (lower is better)
Translates to: PESWLLGSTAAA*PTQTPRPQHRT
Trigger: AGTTCGATGCTGAGGTCGAGGAGTCTGAGTCGGCCACGCTGCAGCAGTACTACCGAGAAGCCATGATTCAGG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CCA 72 bp CCCATCTGGGTCTTGTGCCTCTGCCGCTCTCGCATTTaGTCAGCACGTAATTCATCCACTTCTGGGCGAAGC +
Preference number: 6 (lower is better)
Translates to: PIWVLCLCRSRI*SARNSSTSGRS
Trigger: GCTTCGCCCAGAAGTGGATGAATTACGTGCTGACCAAATGCGAGAGCGGCAGAGGCACAAGACCCAGATGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CCA 72 bp GTCGTTTTCAGGGACACTGGAACCCCTGAATCCCTCTaGAGTCGGGATGATGAGGTGAGGGTTAGGAGGGTC +
Preference number: 6 (lower is better)
Translates to: VVFRDTGTPESL*SRDDEVRVRRV
Trigger: GACCCTCCTAACCCTCACCTCATCATCCCGACTCCAGAGGGATTCAGGGGTTCCAGTGTCCCTGAAAACGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000233755.2
CDS CAA 90 bp GCGTGCCAGGCCTGCAGTTCTAACCAGATCAGTTCGTTCGATCGGTaGAACCAGAAAGCAGCCGTGTTTTCTTGTCCCCTCTGCTCCCTG +
Preference number: 6 (lower is better)
Translates to: ACQACSSNQISSFDR*NQKAAVFSCPLCSL
Trigger: CAGGGAGCAGAGGGGACAAGAAAACACGGCTGCTTTCTGGTTCAACCGATCGAACGAACTGATCTGGTTAGAACTGCAGGCCTGGCACGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CAA 90 bp ACGATGCCGTGCTCATGGAGGACGTTGATGGCGACAGTGATCTGCTaGGTATATAACCTGATGACGTGCTCCTGCAGGCCCAGTCGTGAC +
Preference number: 6 (lower is better)
Translates to: TMPCSWRTLMATVIC*VYNLMTCSCRPSRD
Trigger: GTCACGACTGGGCCTGCAGGAGCACGTCATCAGGTTATATACCAAGCAGATCACTGTCGCCATCAACGTCCTCCATGAGCACGGCATCGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS TCA 72 bp GGTCCCCATGCTTGGTCAGGAGCAGGAAGGCATCCATaGAGACGTCGTCTGGATCCTTTGAGCAGTCCTTTC +
Preference number: 6 (lower is better)
Translates to: GPHAWSGAGRHP*RRRLDPLSSPF
Trigger: GAAAGGACTGCTCAAAGGATCCAGACGACGTCTTCATGGATGCCTTCCTGCTCCTGACCAAGCATGGGGACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS TCA 72 bp ACCTGCATGCTTCTCAGGGTGTCCACAGTCTCCACCTaGGGCACAATTTTGACAGCCCGAGCTTCCCATGTG +
Preference number: 6 (lower is better)
Translates to: TCMLLRVSTVST*GTILTARASHV
Trigger: CACATGGGAAGCTCGGGCTGTCAAAATTGTGCCTCAGGTGGAGACTGTGGACACCCTGAGAAGCATGCAGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS GCA 72 bp GCTCTCAGTTCTTCCCAGGACACAGCGCTACACTTCTaGTCTGAGGAAGGAGGTGTTCCCGACAACTGCACA +
Preference number: 6 (lower is better)
Translates to: ALSSSQDTALHF*SEEGGVPDNCT
Trigger: TGTGCAGTTGTCGGGAACACCTCCTTCCTCAGAGCAGAAGTGTAGCGCTGTGTCCTGGGAAGAACTGAGAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS GCA 72 bp CAAATCCTTGGGTGGCCCATCTGGGTCTTGTGCCTCTaGCGCTCTCGCATTTGGTCAGCACGTAATTCATCC +
Preference number: 6 (lower is better)
Translates to: QILGWPIWVLCL*RSRIWSARNSS
Trigger: GGATGAATTACGTGCTGACCAAATGCGAGAGCGGCAGAGGCACAAGACCCAGATGGGCCACCCAAGGATTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CCA 72 bp GTGTTCCCGACAACTGCACATAATCCGAGCCCCACATaGGACCTGGAAAGTCAGAGAACTCCACTGGACGGT +
Preference number: 6 (lower is better)
Translates to: VFPTTAHNPSPT*DLESQRTPLDG
Trigger: ACCGTCCAGTGGAGTTCTCTGACTTTCCAGGTCCCATGTGGGGCTCGGATTATGTGCAGTTGTCGGGAACAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CCA 72 bp TCCTCGACCTCAGCATCGAACTCCAGGGTGAACATGTaGTCCACACGGTCGATGGCATCGCTGATTCTGTTG +
Preference number: 6 (lower is better)
Translates to: SSTSASNSRVNM*STRSMASLILL
Trigger: CAACAGAATCAGCGATGCCATCGACCGTGTGGACCACATGTTCACCCTGGAGTTCGATGCTGAGGTCGAGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CCA 72 bp CAGGTTCAATGGCTTGTAGGAAATCAAATCCTTGGGTaGCCCATCTGGGTCTTGTGCCTCTGCCGCTCTCGC +
Preference number: 6 (lower is better)
Translates to: QVQWLVGNQILG*PIWVLCLCRSR
Trigger: GCGAGAGCGGCAGAGGCACAAGACCCAGATGGGCCACCCAAGGATTTGATTTCCTACAAGCCATTGAACCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CCA 72 bp GGGGCTGTTCCGATGGATAGCTGTGACAGGGCTGTGTaGCTTTCCTATGACGTGCCCGATGCACTCATTCAT +
Preference number: 6 (lower is better)
Translates to: GAVPMDSCDRAV*LSYDVPDALIH
Trigger: ATGAATGAGTGCATCGGGCACGTCATAGGAAAGCCACACAGCCCTGTCACAGCTATCCATCGGAACAGCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CCA 72 bp TCTATGGGCCCCTGCTTAGAGGCCGAGTCTTTGGTCTaGCTGATGAGTGTTCGAAGTTCCCAGCTTCTCCGA +
Preference number: 6 (lower is better)
Translates to: SMGPCLEAESLV*LMSVRSSQLLR
Trigger: TCGGAGAAGCTGGGAACTTCGAACACTCATCAGCCAGACCAAAGACTCGGCCTCTAAGCAGGGGCCCATAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CCA 72 bp TCTGTGCAAACCTTGACAAAAGCGTGGTCGAGGAGCTaGCTGGCTGTCCACCGTATCTTCGGGTCACTTTCC +
Preference number: 6 (lower is better)
Translates to: SVQTLTKAWSRS*LAVHRIFGSLS
Trigger: GGAAAGTGACCCGAAGATACGGTGGACAGCCAGCCAGCTCCTCGACCACGCTTTTGTCAAGGTTTGCACAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CAA 72 bp GTAGGAAATCAAATCCTTGGGTGGCCCATCTGGGTCTaGTGCCTCTGCCGCTCTCGCATTTGGTCAGCACGT +
Preference number: 6 (lower is better)
Translates to: VGNQILGWPIWV*CLCRSRIWSAR
Trigger: ACGTGCTGACCAAATGCGAGAGCGGCAGAGGCACAAGACCCAGATGGGCCACCCAAGGATTTGATTTCCTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CAA 72 bp GTGTTCGAAGTTCCCAGCTTCTCCGAGTTGATCCACTaGAGTCACTCCGAGGATACGCTGGCTCGTCTCGCT +
Preference number: 6 (lower is better)
Translates to: VFEVPSFSELIH*SHSEDTLARLA
Trigger: AGCGAGACGAGCCAGCGTATCCTCGGAGTGACTCAAGTGGATCAACTCGGAGAAGCTGGGAACTTCGAACAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS TCA 72 bp CCTTTAGGACCTCTTTACACTCTCGCACTAGCTGTTTaGTACTCAAGAGGGAAGGCTCCCCGGCAGGCCTCT +
Preference number: 6 (lower is better)
Translates to: PLGPLYTLALAV*YSRGKAPRQAS
Trigger: AGAGGCCTGCCGGGGAGCCTTCCCTCTTGAGTATCAAACAGCTAGTGCGAGAGTGTAAAGAGGTCCTAAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS GCA 72 bp TGCAAACCTTTGGCGATGATGGGCTGGCTAGATGTCTaGTCATGGCGTACAGTCATCAGCCCCTCAATGGAC +
Preference number: 6 (lower is better)
Translates to: CKPLAMMGWLDV*SWRTVISPSMD
Trigger: GTCCATTGAGGGGCTGATGACTGTACGCCATGAGCAGACATCTAGCCAGCCCATCATCGCCAAAGGTTTGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS GCA 72 bp AGTCGGACTGACTTCTGGATAGCTTCTATGGGCCCCTaGTTAGAGGCCGAGTCTTTGGTCTGGCTGATGAGT +
Preference number: 6 (lower is better)
Translates to: SRTDFWIASMGP*LEAESLVWLMS
Trigger: ACTCATCAGCCAGACCAAAGACTCGGCCTCTAAGCAGGGGCCCATAGAAGCTATCCAGAAGTCAGTCCGACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS GCA 72 bp GTGATCTGCTTGGTATATAACCTGATGACGTGCTCCTaGAGGCCCAGTCGTGACACCTCCTCTAGTGTACCC +
Preference number: 6 (lower is better)
Translates to: VICLVYNLMTCS*RPSRDTSSSVP
Trigger: GGGTACACTAGAGGAGGTGTCACGACTGGGCCTGCAGGAGCACGTCATCAGGTTATATACCAAGCAGATCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS GCA 72 bp GCGACAGTGATCTGCTTGGTATATAACCTGATGACGTaGTCCTGCAGGCCCAGTCGTGACACCTCCTCTAGT +
Preference number: 6 (lower is better)
Translates to: ATVICLVYNLMT*SCRPSRDTSSS
Trigger: ACTAGAGGAGGTGTCACGACTGGGCCTGCAGGAGCACGTCATCAGGTTATATACCAAGCAGATCACTGTCGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS GCA 72 bp CCGTGCTCATGGAGGACGTTGATGGCGACAGTGATCTaGTTGGTATATAACCTGATGACGTGCTCCTGCAGG +
Preference number: 6 (lower is better)
Translates to: PCSWRTLMATVI*LVYNLMTCSCR
Trigger: CCTGCAGGAGCACGTCATCAGGTTATATACCAAGCAGATCACTGTCGCCATCAACGTCCTCCATGAGCACGG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CCA 72 bp CGATACCTCCTCTCTTCAAACAGTCGGACTGACTTCTaGATAGCTTCTATGGGCCCCTGCTTAGAGGCCGAG +
Preference number: 6 (lower is better)
Translates to: RYLLSSNSRTDF*IASMGPCLEAE
Trigger: CTCGGCCTCTAAGCAGGGGCCCATAGAAGCTATCCAGAAGTCAGTCCGACTGTTTGAAGAGAGGAGGTATCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CAA 72 bp TGCTCATGGAGGACGTTGATGGCGACAGTGATCTGCTaGGTATATAACCTGATGACGTGCTCCTGCAGGCCC +
Preference number: 6 (lower is better)
Translates to: CSWRTLMATVIC*VYNLMTCSCRP
Trigger: GGGCCTGCAGGAGCACGTCATCAGGTTATATACCAAGCAGATCACTGTCGCCATCAACGTCCTCCATGAGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CAA 90 bp TCCTCTGGTGCTTGGCTGACAGGCGTTTCATCTGTCGAGGTGTGCTaGGGGGTGAGGTGCCGTAGAGAGTCTCTGTATTTGTTTCATCAG +
Preference number: 6 (lower is better)
Translates to: SSGAWLTGVSSVEVC*GVRCRRESLYLFHQ
Trigger: CTGATGAAACAAATACAGAGACTCTCTACGGCACCTCACCCCCAAGCACACCTCGACAGATGAAACGCCTGTCAGCCAAGCACCAGAGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000089058.7
ENSMUST00000233002.2
ENSMUST00000233012.2
ENSMUST00000233755.2
CDS GCA 72 bp CATCAGAAAAGTCCTCTGGATCGGATTCCATACTTTTaGGAGCCGACTCTCCCAACATGCACTCCTGCCTCG +
Preference number: 6 (lower is better)
Translates to: HQKSPLDRIPYF*EPTLPTCTPAS
Trigger: CGAGGCAGGAGTGCATGTTGGGAGAGTCGGCTCGCAAAAGTATGGAATCCGATCCAGAGGACTTTTCTGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS GCA 72 bp TTCCAGAAAGCTCCCTGTGGATTTCAGCAGCATCCCTaGGATGTCACAGAAAAGCTTTCCAGCCTGCGCTTC +
Preference number: 6 (lower is better)
Translates to: FQKAPCGFQQHP*DVTEKLSSLRF
Trigger: GAAGCGCAGGCTGGAAAGCTTTTCTGTGACATCGCAGGGATGCTGCTGAAATCCACAGGGAGCTTTCTGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CCA 72 bp GTACCGTTCATAGTCCTTCTGCAGAGCCTGCAAGGATaGGTAAAGTGCCTCCATGTACTCCAGCAGCTCCAT +
Preference number: 6 (lower is better)
Translates to: VPFIVLLQSLQG*VKCLHVLQQLH
Trigger: ATGGAGCTGCTGGAGTACATGGAGGCACTTTACCCATCCTTGCAGGCTCTGCAGAAGGACTATGAACGGTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CCA 72 bp TTCTTGAGCTGCTGCAAACCTTTGGCGATGATGGGCTaGCTAGATGTCTGCTCATGGCGTACAGTCATCAGC +
Preference number: 6 (lower is better)
Translates to: FLSCCKPLAMMG*LDVCSWRTVIS
Trigger: GCTGATGACTGTACGCCATGAGCAGACATCTAGCCAGCCCATCATCGCCAAAGGTTTGCAGCAGCTCAAGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CAA 72 bp ATTTCAAACACTGGCCAGCCAATGTCTGATAGGTTCTaGATGCCCAGCACGGTGCCCATGATCCGCAGCTTC +
Preference number: 6 (lower is better)
Translates to: ISNTGQPMSDRF*MPSTVPMIRSF
Trigger: GAAGCTGCGGATCATGGGCACCGTGCTGGGCATCAAGAACCTATCAGACATTGGCTGGCCAGTGTTTGAAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CAA 72 bp AGCTCAAGTGCATCGTTCTTGAGCTGCTGCAAACCTTaGGCGATGATGGGCTGGCTAGATGTCTGCTCATGG +
Preference number: 6 (lower is better)
Translates to: SSSASFLSCCKP*AMMGWLDVCSW
Trigger: CCATGAGCAGACATCTAGCCAGCCCATCATCGCCAAAGGTTTGCAGCAGCTCAAGAACGATGCACTTGAGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CAA 72 bp ATGTGGTCCACACGGTCGATGGCATCGCTGATTCTGTaGCATAGCTCAAGTGCATCGTTCTTGAGCTGCTGC +
Preference number: 6 (lower is better)
Translates to: MWSTRSMASLIL*HSSSASFLSCC
Trigger: GCAGCAGCTCAAGAACGATGCACTTGAGCTATGCAACAGAATCAGCGATGCCATCGACCGTGTGGACCACAT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CAA 72 bp ATAGCTTCTATGGGCCCCTGCTTAGAGGCCGAGTCTTaGGTCTGGCTGATGAGTGTTCGAAGTTCCCAGCTT +
Preference number: 6 (lower is better)
Translates to: IASMGPCLEAES*VWLMSVRSSQL
Trigger: AAGCTGGGAACTTCGAACACTCATCAGCCAGACCAAAGACTCGGCCTCTAAGCAGGGGCCCATAGAAGCTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CAA 90 bp GTATTTGTTTCATCAGAAAAGTCCTCTGGATCGGATTCCATACTTTaGCGAGCCGACTCTCCCAACATGCACTCCTGCCTCGCCGCTGGG +
Preference number: 6 (lower is better)
Translates to: VFVSSEKSSGSDSIL*RADSPNMHSCLAAG
Trigger: CCCAGCGGCGAGGCAGGAGTGCATGTTGGGAGAGTCGGCTCGCAAAAGTATGGAATCCGATCCAGAGGACTTTTCTGATGAAACAAATAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CAA 90 bp CTGTTGCATAGCTCAAGTGCATCGTTCTTGAGCTGCTGCAAACCTTaGGCGATGATGGGCTGGCTAGATGTCTGCTCATGGCGTACAGTC +
Preference number: 6 (lower is better)
Translates to: LLHSSSASFLSCCKP*AMMGWLDVCSWRTV
Trigger: GACTGTACGCCATGAGCAGACATCTAGCCAGCCCATCATCGCCAAAGGTTTGCAGCAGCTCAAGAACGATGCACTTGAGCTATGCAACAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CAA 90 bp CAATGGCTTGTAGGAAATCAAATCCTTGGGTGGCCCATCTGGGTCTaGTGCCTCTGCCGCTCTCGCATTTGGTCAGCACGTAATTCATCC +
Preference number: 6 (lower is better)
Translates to: QWLVGNQILGWPIWV*CLCRSRIWSARNSS
Trigger: GGATGAATTACGTGCTGACCAAATGCGAGAGCGGCAGAGGCACAAGACCCAGATGGGCCACCCAAGGATTTGATTTCCTACAAGCCATTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CAA 90 bp AGGGTGAACATGTGGTCCACACGGTCGATGGCATCGCTGATTCTGTaGCATAGCTCAAGTGCATCGTTCTTGAGCTGCTGCAAACCTTTG +
Preference number: 6 (lower is better)
Translates to: RVNMWSTRSMASLIL*HSSSASFLSCCKPL
Trigger: CAAAGGTTTGCAGCAGCTCAAGAACGATGCACTTGAGCTATGCAACAGAATCAGCGATGCCATCGACCGTGTGGACCACATGTTCACCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS TCA 72 bp AGGCTTTTCTCTGAAGTACGAGGTGAGCAGACTCCATaGCAACCAGCAGAAGGTTGTCCACCTGCATGCTTC +
Preference number: 6 (lower is better)
Translates to: RLFSEVRGEQTP*QPAEGCPPACF
Trigger: GAAGCATGCAGGTGGACAACCTTCTGCTGGTTGTCATGGAGTCTGCTCACCTCGTACTTCAGAGAAAAGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS GCA 72 bp TTGAACCAGAAAGCAGCCGTGTTTTCTTGTCCCCTCTaGTCCCTGTCCTTCTTCTTCGAGACTGAGGTAAGC +
Preference number: 6 (lower is better)
Translates to: LNQKAAVFSCPL*SLSFFFETEVS
Trigger: GCTTACCTCAGTCTCGAAGAAGAAGGACAGGGAGCAGAGGGGACAAGAAAACACGGCTGCTTTCTGGTTCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS GCA 72 bp CATCAGAAAAGTCCTCTGGATCGGATTCCATACTTTTaGGAGCCGACTCTCCCAACATGCACTCCTGCCTTC +
Preference number: 6 (lower is better)
Translates to: HQKSPLDRIPYF*EPTLPTCTPAF
Trigger: GAAGGCAGGAGTGCATGTTGGGAGAGTCGGCTCGCAAAAGTATGGAATCCGATCCAGAGGACTTTTCTGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000233002.2
CDS CAA 72 bp TCATCAGAAAAGTCCTCTGGATCGGATTCCATACTTTaGCGAGCCGACTCTCCCAACATGCACTCCTGCCTC +
Preference number: 6 (lower is better)
Translates to: SSEKSSGSDSIL*RADSPNMHSCL
Trigger: GAGGCAGGAGTGCATGTTGGGAGAGTCGGCTCGCAAAAGTATGGAATCCGATCCAGAGGACTTTTCTGATGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CAA 72 bp GCCTGCAGTTCTAACCAGATCAGTTCGTTCGATCGGTaGAACCAGAAAGCAGCCGTGTTTTCTTGTCCCCTC +
Preference number: 6 (lower is better)
Translates to: ACSSNQISSFDR*NQKAAVFSCPL
Trigger: GAGGGGACAAGAAAACACGGCTGCTTTCTGGTTCAACCGATCGAACGAACTGATCTGGTTAGAACTGCAGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS TCA 72 bp CATCTCTCGATACCTCCTCTCTTCAAACAGTCGGACTaGCTTCTGGATAGCTTCTATGGGCCCCTGCTTAGA +
Preference number: 6 (lower is better)
Translates to: HLSIPPLFKQSD*LLDSFYGPLLR
Trigger: TCTAAGCAGGGGCCCATAGAAGCTATCCAGAAGTCAGTCCGACTGTTTGAAGAGAGGAGGTATCGAGAGATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS TCA 72 bp TCTGCAGTCTCCTTGATAGTCTTGTGGTCGTTAGGCTaGAATCGAATCTCCTTCATGGCCATCAGCTCCCCT +
Preference number: 6 (lower is better)
Translates to: SAVSLIVLWSLG*NRISFMAISSP
Trigger: AGGGGAGCTGATGGCCATGAAGGAGATTCGATTTCAGCCTAACGACCACAAGACTATCAAGGAGACTGCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS TCA 72 bp ACACCTCCTCTAGTGTACCCTCATCACAGTACTCCATaGAGATGTACATCTCTTCCCTGTGAAGCTCCACGC +
Preference number: 6 (lower is better)
Translates to: TPPLVYPHHSTP*RCTSLPCEAPR
Trigger: GCGTGGAGCTTCACAGGGAAGAGATGTACATCTTCATGGAGTACTGTGATGAGGGTACACTAGAGGAGGTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS GCA 72 bp TTCTTCTCCTCAGCGAGGCTGTCGGGGACAAACACGTaGAAATTCTCTAACCCGGGAATCTGTACCTTAACA +
Preference number: 6 (lower is better)
Translates to: FFSSARLSGTNT*KFSNPGICTLT
Trigger: TGTTAAGGTACAGATTCCCGGGTTAGAGAATTTGCACGTGTTTGTCCCCGACAGCCTCGCTGAGGAGAAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CCA 72 bp TATGATACTCAAACCCAAAGTTGTAGCCCTGAATCATaGCTTCTCGGTAGTACTGCTGCAGCGTGGCCGACT +
Preference number: 6 (lower is better)
Translates to: YDTQTQSCSPES*LLGSTAAAWPT
Trigger: AGTCGGCCACGCTGCAGCAGTACTACCGAGAAGCCATGATTCAGGGCTACAACTTTGGGTTTGAGTATCATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CCA 72 bp GTCCCTAGGGTGCTGTTCACCTCTCCGGGCATGGTCTaGGCGTTGTTTTTAAGTTTTACAGAGCATCCAAAA +
Preference number: 6 (lower is better)
Translates to: VPRVLFTSPGMV*ALFLSFTEHPK
Trigger: TTTTGGATGCTCTGTAAAACTTAAAAACAACGCCCAGACCATGCCCGGAGAGGTGAACAGCACCCTAGGGAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CAA 72 bp TCATCAGAAAAGTCCTCTGGATCGGATTCCATACTTTaGCGAGCCGACTCTCCCAACATGCACTCCTGCCTT +
Preference number: 6 (lower is better)
Translates to: SSEKSSGSDSIL*RADSPNMHSCL
Trigger: AAGGCAGGAGTGCATGTTGGGAGAGTCGGCTCGCAAAAGTATGGAATCCGATCCAGAGGACTTTTCTGATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233002.2
CDS CAA 90 bp AAGACGTCGTCTGGATCCTTTGAGCAGTCCTTTCCTGTGGCAGCATaGAGTAGCTGCAAAATAATTTTCTTCTCCTCAGCGAGGCTGTCG +
Preference number: 6 (lower is better)
Translates to: KTSSGSFEQSFPVAA*SSCKIIFFSSARLS
Trigger: CGACAGCCTCGCTGAGGAGAAGAAAATTATTTTGCAGCTACTCAATGCTGCCACAGGAAAGGACTGCTCAAAGGATCCAGACGACGTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS TCA 72 bp TCTCCTTCATGGCCATCAGCTCCCCTGTGTCAACACTaGTGCAGGTGTATACTTTTCCATACTGTCCTTCTC +
Preference number: 6 (lower is better)
Translates to: SPSWPSAPLCQH*CRCILFHTVLL
Trigger: GAGAAGGACAGTATGGAAAAGTATACACCTGCATCAGTGTTGACACAGGGGAGCTGATGGCCATGAAGGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS GCA 72 bp AAATTCTCTAACCCGGGAATCTGTACCTTAACATACTaGTTTGCTTTCAGAGCGTCCAGGAGCTCTCGGGCT +
Preference number: 6 (lower is better)
Translates to: KFSNPGICTLTY*FAFRASRSSRA
Trigger: AGCCCGAGAGCTCCTGGACGCTCTGAAAGCAAAGCAGTATGTTAAGGTACAGATTCCCGGGTTAGAGAATTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CAA 72 bp TGCTTGGGGGTGAGGTGCCGTAGAGAGTCTCTGTATTaGTTTCATCAGAAAAGTCCTCTGGATCGGATTCCA +
Preference number: 6 (lower is better)
Translates to: CLGVRCRRESLY*FHQKSPLDRIP
Trigger: TGGAATCCGATCCAGAGGACTTTTCTGATGAAACAAATACAGAGACTCTCTACGGCACCTCACCCCCAAGCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000089058.7
ENSMUST00000233002.2
ENSMUST00000233012.2
ENSMUST00000233755.2
CDS CAA 90 bp AGCACTGTGCATTTTTCTTATGGTCTCGCTCCGTTGTTCTCAGAGTaGCTCGAATCTTCTTCTCCTGCTTGTAGCTGTATTCTTCCACGG +
Preference number: 6 (lower is better)
Translates to: STVHFSYGLAPLFSE*LESSSPACSCILPR
Trigger: CCGTGGAAGAATACAGCTACAAGCAGGAGAAGAAGATTCGAGCAACTCTGAGAACAACGGAGCGAGACCATAAGAAAAATGCACAGTGCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CAA 90 bp TCCAACATGCATGACGTTATCATAGGACTTAGGGGTATCGCACACTaGGCCGATGATATTCTTTCTCCTCATCTCTCGATACCTCCTCTC +
Preference number: 6 (lower is better)
Translates to: SNMHDVIIGLRGIAH*ADDILSPHLSIPPL
Trigger: GAGAGGAGGTATCGAGAGATGAGGAGAAAGAATATCATCGGCCAAGTGTGCGATACCCCTAAGTCCTATGATAACGTCATGCATGTTGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS GCA 72 bp GGGGTGCTTGATGCCTTCAAATATTTTCAACTCGTCTaGAGTCTCCTTGATAGTCTTGTGGTCGTTAGGCTG +
Preference number: 6 (lower is better)
Translates to: GVLDAFKYFQLV*SLLDSLVVVRL
Trigger: CAGCCTAACGACCACAAGACTATCAAGGAGACTGCAGACGAGTTGAAAATATTTGAAGGCATCAAGCACCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CCA 72 bp GAGAGTCTCTGTATTTGTTTCATCAGAAAAGTCCTCTaGATCGGATTCCATACTTTTGCGAGCCGACTCTCC +
Preference number: 6 (lower is better)
Translates to: ESLCICFIRKVL*IGFHTFASRLS
Trigger: GGAGAGTCGGCTCGCAAAAGTATGGAATCCGATCCAGAGGACTTTTCTGATGAAACAAATACAGAGACTCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000089058.7
ENSMUST00000233002.2
ENSMUST00000233012.2
ENSMUST00000233755.2
CDS CAA 72 bp TCTGGATCCTTTGAGCAGTCCTTTCCTGTGGCAGCATaGAGTAGCTGCAAAATAATTTTCTTCTCCTCAGCG +
Preference number: 6 (lower is better)
Translates to: SGSFEQSFPVAA*SSCKIIFFSSA
Trigger: CGCTGAGGAGAAGAAAATTATTTTGCAGCTACTCAATGCTGCCACAGGAAAGGACTGCTCAAAGGATCCAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CAA 72 bp CATGACGTTATCATAGGACTTAGGGGTATCGCACACTaGGCCGATGATATTCTTTCTCCTCATCTCTCGATA +
Preference number: 6 (lower is better)
Translates to: HDVIIGLRGIAH*ADDILSPHLSI
Trigger: TATCGAGAGATGAGGAGAAAGAATATCATCGGCCAAGTGTGCGATACCCCTAAGTCCTATGATAACGTCATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS CAA 72 bp CATTTTTCTTATGGTCTCGCTCCGTTGTTCTCAGAGTaGCTCGAATCTTCTTCTCCTGCTTGTAGCTGTATT +
Preference number: 6 (lower is better)
Translates to: HFSYGLAPLFSE*LESSSPACSCI
Trigger: AATACAGCTACAAGCAGGAGAAGAAGATTCGAGCAACTCTGAGAACAACGGAGCGAGACCATAAGAAAAATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2
CDS TCA 72 bp GGGCGAAGCTTATATATTTGTCTCCTATCTTCTGCCTaGATTCCCCAGACATCAAACGAACAACTTCTTTAT +
Preference number: 6 (lower is better)
Translates to: GRSLYICLLSSA*IPQTSNEQLLY
Trigger: ATAAAGAAGTTGTTCGTTTGATGTCTGGGGAATTCAGGCAGAAGATAGGAGACAAATATATAAGCTTCGCCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089058.7
ENSMUST00000233755.2