RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MAP3K2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024383

Ensembl transcript IDs: ENSMUST00000096575.5

Found 220 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TCAGCCCCAGCCTGCCTTGGACTCTCTCAGGACCCATGCAGAAGGTaGGTCCTGAGAGCACGCCTGGCACTGCTAGTGGATCTGCTCCAG +
Preference number: 1 (lower is better)
Translates to: SAPACLGLSQDPCRR*VLRARLALLVDLLQ
Trigger: CTGGAGCAGATCCACTAGCAGTGCCAGGCGTGCTCTCAGGACGCACCTTCTGCATGGGTCCTGAGAGAGTCCAAGGCAGGCTGGGGCTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR GCA 90 bp CCCCTTGACTCAGCCCCAGCCTGCCTTGGACTCTCTCAGGACCCATaGAGAAGGTGCGTCCTGAGAGCACGCCTGGCACTGCTAGTGGAT +
Preference number: 1 (lower is better)
Translates to: PLDSAPACLGLSQDP*RRCVLRARLALLVD
Trigger: ATCCACTAGCAGTGCCAGGCGTGCTCTCAGGACGCACCTTCTGCATGGGTCCTGAGAGAGTCCAAGGCAGGCTGGGGCTGAGTCAAGGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR GCA 90 bp CCTGGGTGGGGAGTCCTTGTGCACTACAGTCTACTTAGCAGCACCTaGAACCCCTGCCCACTGGATGCTAGTAGTACCTTGCCAGTTATG +
Preference number: 1 (lower is better)
Translates to: PGWGVLVHYSLLSST*NPCPLDASSTLPVM
Trigger: CATAACTGGCAAGGTACTACTAGCATCCAGTGGGCAGGGGTTGCAGGTGCTGCTAAGTAGACTGTAGTGCACAAGGACTCCCCACCCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR GCA 90 bp CTACACCGTCCCTCTGACCGCTGCTCTGACTGCTCTGTGAATGGCTaGTTGGTTTCCATCCTAGGCACTTTTGTCATGTGGCAGGAGAAC +
Preference number: 1 (lower is better)
Translates to: LHRPSDRCSDCSVNG*LVSILGTFVMWQEN
Trigger: GTTCTCCTGCCACATGACAAAAGTGCCTAGGATGGAAACCAAGCAGCCATTCACAGAGCAGTCAGAGCAGCGGTCAGAGGGACGGTGTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR GCA 90 bp ACGCCTGGCACTGCTAGTGGATCTGCTCCAGCACCGGAAGGAAGTTaGTACTGGCAACGCAGAACGCATTTAAAGGCACAAAGTCAGCAG +
Preference number: 1 (lower is better)
Translates to: TPGTASGSAPAPEGS*YWQRRTHLKAQSQQ
Trigger: CTGCTGACTTTGTGCCTTTAAATGCGTTCTGCGTTGCCAGTAGCAACTTCCTTCCGGTGCTGGAGCAGATCCACTAGCAGTGCCAGGCGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR CCA 90 bp GGCACTGCTAGTGGATCTGCTCCAGCACCGGAAGGAAGTTGCTACTaGCAACGCAGAACGCATTTAAAGGCACAAAGTCAGCAGTCTGGC +
Preference number: 1 (lower is better)
Translates to: GTASGSAPAPEGSCY*QRRTHLKAQSQQSG
Trigger: GCCAGACTGCTGACTTTGTGCCTTTAAATGCGTTCTGCGTTGCCAGTAGCAACTTCCTTCCGGTGCTGGAGCAGATCCACTAGCAGTGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR GCA 90 bp TTAGCAGCACCTGCAACCCCTGCCCACTGGATGCTAGTAGTACCTTaGCAGTTATGGCAACAAAGTGTCTCCAGGCATTGCCAAATGCCA +
Preference number: 1 (lower is better)
Translates to: LAAPATPAHWMLVVP*QLWQQSVSRHCQMP
Trigger: TGGCATTTGGCAATGCCTGGAGACACTTTGTTGCCATAACTGGCAAGGTACTACTAGCATCCAGTGGGCAGGGGTTGCAGGTGCTGCTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR GCA 90 bp GGAGTCCTTGTGCACTACAGTCTACTTAGCAGCACCTGCAACCCCTaGCCACTGGATGCTAGTAGTACCTTGCCAGTTATGGCAACAAAG +
Preference number: 1 (lower is better)
Translates to: GVLVHYSLLSSTCNP*PLDASSTLPVMATK
Trigger: CTTTGTTGCCATAACTGGCAAGGTACTACTAGCATCCAGTGGGCAGGGGTTGCAGGTGCTGCTAAGTAGACTGTAGTGCACAAGGACTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR CCA 90 bp CCTGCAACCCCTGCCCACTGGATGCTAGTAGTACCTTGCCAGTTATaGCAACAAAGTGTCTCCAGGCATTGCCAAATGCCAAGTGAAGGA +
Preference number: 1 (lower is better)
Translates to: PATPAHWMLVVPCQL*QQSVSRHCQMPSEG
Trigger: TCCTTCACTTGGCATTTGGCAATGCCTGGAGACACTTTGTTGCCATAACTGGCAAGGTACTACTAGCATCCAGTGGGCAGGGGTTGCAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR CCA 90 bp TTGTGCACTACAGTCTACTTAGCAGCACCTGCAACCCCTGCCCACTaGATGCTAGTAGTACCTTGCCAGTTATGGCAACAAAGTGTCTCC +
Preference number: 1 (lower is better)
Translates to: LCTTVYLAAPATPAH*MLVVPCQLWQQSVS
Trigger: GGAGACACTTTGTTGCCATAACTGGCAAGGTACTACTAGCATCCAGTGGGCAGGGGTTGCAGGTGCTGCTAAGTAGACTGTAGTGCACAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR CCA 90 bp AATGGGAGGAGTGGAAGCAGCACTAACGATGACAGAAGCAAAGAGTaGCTCACAGCACACCTTCCCCAGCAACCAACAAGAGGTATAAGA +
Preference number: 1 (lower is better)
Translates to: NGRSGSSTNDDRSKE*LTAHLPQQPTRGIR
Trigger: TCTTATACCTCTTGTTGGTTGCTGGGGAAGGTGTGCTGTGAGCCACTCTTTGCTTCTGTCATCGTTAGTGCTGCTTCCACTCCTCCCATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR TCA 90 bp TCTTCCAGAAGCTCAACCTTGACCACTTTTAGTACCTCTGAGAAATaGCTTGGTTCCCTAGAGCTACCCATCTCCAGCTCTGAGAGCGAG +
Preference number: 1 (lower is better)
Translates to: SSRSSTLTTFSTSEK*LGSLELPISSSESE
Trigger: CTCGCTCTCAGAGCTGGAGATGGGTAGCTCTAGGGAACCAAGTCATTTCTCAGAGGTACTAAAAGTGGTCAAGGTTGAGCTTCTGGAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR TCA 90 bp AAAAGCAAGAAGGTCATCCTACGAAGGTCACAGCAGCACAGAAACTaGGGGAGGGCTACATCTAGGGAGAAGTGCAAACACAGAGACAGT +
Preference number: 1 (lower is better)
Translates to: KSKKVILRRSQQHRN*GRATSREKCKHRDS
Trigger: ACTGTCTCTGTGTTTGCACTTCTCCCTAGATGTAGCCCTCCCTCAGTTTCTGTGCTGCTGTGACCTTCGTAGGATGACCTTCTTGCTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR GCA 90 bp TACCTTGCCAGTTATGGCAACAAAGTGTCTCCAGGCATTGCCAAATaGCAAGTGAAGGAAAATGACTCCCCACCACAAACCTCATTGTTT +
Preference number: 1 (lower is better)
Translates to: YLASYGNKVSPGIAK*QVKENDSPPQTSLF
Trigger: AAACAATGAGGTTTGTGGTGGGGAGTCATTTTCCTTCACTTGGCATTTGGCAATGCCTGGAGACACTTTGTTGCCATAACTGGCAAGGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR GCA 90 bp AGTACAGTAACATTGTCAGACAGAAACCTAGTTTCCTACACTTCCTaGCAGCTGCTCAGAACACACAGTACAGAATACAGACGCTGTGCA +
Preference number: 1 (lower is better)
Translates to: STVTLSDRNLVSYTS*QLLRTHSTEYRRCA
Trigger: TGCACAGCGTCTGTATTCTGTACTGTGTGTTCTGAGCAGCTGGCAGGAAGTGTAGGAAACTAGGTTTCTGTCTGACAATGTTACTGTACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR CCA 90 bp CTACTGGCAACGCAGAACGCATTTAAAGGCACAAAGTCAGCAGTCTaGCCGTTTTCTAGCCACAAAGAAACATTGCAGTACCAAAGAATC +
Preference number: 1 (lower is better)
Translates to: LLATQNAFKGTKSAV*PFSSHKETLQYQRI
Trigger: GATTCTTTGGTACTGCAATGTTTCTTTGTGGCTAGAAAACGGCCAGACTGCTGACTTTGTGCCTTTAAATGCGTTCTGCGTTGCCAGTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR CCA 90 bp CAAATGTGTGTGAGATGCGGTACATACTCCACTGTGTCTGGCTTCTaGGTAGGTTCTAATCACATGGGTTCCTCTCAACATGATAAACTT +
Preference number: 1 (lower is better)
Translates to: QMCVRCGTYSTVSGF*VGSNHMGSSQHDKL
Trigger: AAGTTTATCATGTTGAGAGGAACCCATGTGATTAGAACCTACCCAGAAGCCAGACACAGTGGAGTATGTACCGCATCTCACACACATTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR GCA 90 bp ACAAGCACAATTTTGAATGAACAACAGACCCAAATGTGTGTGAGATaGGGTACATACTCCACTGTGTCTGGCTTCTGGGTAGGTTCTAAT +
Preference number: 1 (lower is better)
Translates to: TSTILNEQQTQMCVR*GTYSTVSGFWVGSN
Trigger: ATTAGAACCTACCCAGAAGCCAGACACAGTGGAGTATGTACCGCATCTCACACACATTTGGGTCTGTTGTTCATTCAAAATTGTGCTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR GCA 90 bp CCAAATGAAACCACTGGTGTGAACTCTGCCATTAATCAAGGAGTCTaGAGCATACTGGGTCATCTGCCAATCTATTCAGGTTTGATTTTA +
Preference number: 1 (lower is better)
Translates to: PNETTGVNSAINQGV*SILGHLPIYSGLIL
Trigger: TAAAATCAAACCTGAATAGATTGGCAGATGACCCAGTATGCTGCAGACTCCTTGATTAATGGCAGAGTTCACACCAGTGGTTTCATTTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR GCA 90 bp ACTTTCAACCGAGGAATGGATTCAGAATACAGGACAAAATTAGACTaGAACACTGAACTCCTGAGTTCTCCAACAAACACAGAACCACAC +
Preference number: 1 (lower is better)
Translates to: TFNRGMDSEYRTKLD*NTELLSSPTNTEPH
Trigger: GTGTGGTTCTGTGTTTGTTGGAGAACTCAGGAGTTCAGTGTTGCAGTCTAATTTTGTCCTGTATTCTGAATCCATTCCTCGGTTGAAAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR CCA 90 bp CACCAACCTGAGCATCAGATGTCAACACAAATCTACACACATCAGTaGCCAAATGACGTTAATAAGATTGGCACACATAAGAACGTATGT +
Preference number: 1 (lower is better)
Translates to: HQPEHQMSTQIYTHQ*PNDVNKIGTHKNVC
Trigger: ACATACGTTCTTATGTGTGCCAATCTTATTAACGTCATTTGGCCACTGATGTGTGTAGATTTGTGTTGACATCTGATGCTCAGGTTGGTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR GCA 90 bp CTTTACCTTTTACAGTCCAGCATGTGCAATACTCAACTTCTCATATaGTGTAGATTGTGCCTCTTAATACTTTCTAAGGCAATAGTCATA +
Preference number: 1 (lower is better)
Translates to: LYLLQSSMCNTQLLI*CRLCLLILSKAIVI
Trigger: TATGACTATTGCCTTAGAAAGTATTAAGAGGCACAATCTACAGCATATGAGAAGTTGAGTATTGCACATGCTGGACTGTAAAAGGTAAAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR GCA 90 bp CAGTCCAGCATGTGCAATACTCAACTTCTCATATGCTGTAGATTGTaGCTCTTAATACTTTCTAAGGCAATAGTCATAGATGTTTTTAAA +
Preference number: 1 (lower is better)
Translates to: QSSMCNTQLLICCRL*LLILSKAIVIDVFK
Trigger: TTTAAAAACATCTATGACTATTGCCTTAGAAAGTATTAAGAGGCACAATCTACAGCATATGAGAAGTTGAGTATTGCACATGCTGGACTG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR CAA 90 bp CACCGTCCCTCTGACCGCTGCTCTGACTGCTCTGTGAATGGCTGCTaGGTTTCCATCCTAGGCACTTTTGTCATGTGGCAGGAGAACTCC +
Preference number: 2 (lower is better)
Translates to: HRPSDRCSDCSVNGC*VSILGTFVMWQENS
Trigger: GGAGTTCTCCTGCCACATGACAAAAGTGCCTAGGATGGAAACCAAGCAGCCATTCACAGAGCAGTCAGAGCAGCGGTCAGAGGGACGGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR TCA 90 bp GGCCCACTTCCTTTTGCCCATAATCCTTTTAGGCTTGCAGAGTCCCACACTAGTGAGAGGTCTTCCCCTTaGCTCAGCCCCAGCCTGCCT +
Preference number: 2 (lower is better)
Translates to: GPLPFAHNPFRLAESHTSERSSP*LSPSLP
Trigger: AGGCAGGCTGGGGCTGAGTCAAGGGGAAGACCTCTC...ACTAGTGTGGGACTCTGCAAGCCTAAAAGGATTATGGGCAAAAGGAAGTGGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR GCA 90 bp GGCCCACTTCCTTTTGCCCATAATCCTTTTAGGCTTGCAGAGTCCCACACTAGTCTACCCCTGCCCCAATaGCACACACGCATACACGCA +
Preference number: 2 (lower is better)
Translates to: GPLPFAHNPFRLAESHTSLPLPQ*HTRIHA
Trigger: TGCGTGTATGCGTGTGTGGCATTGGGGCAGGGGTAG...ACTAGTGTGGGACTCTGCAAGCCTAAAAGGATTATGGGCAAAAGGAAGTGGGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR GCA 90 bp TTTGCAAAAGCAAGAAGGTCATCCTACGAAGGTCACAGCAGCACAGAAACTGAGGACCCATGCAGAAGGTaGGTCCTGAGAGCACGCCTG +
Preference number: 2 (lower is better)
Translates to: FAKARRSSYEGHSSTETEDPCRR*VLRARL
Trigger: CAGGCGTGCTCTCAGGACGCACCTTCTGCATGGGTC...CTCAGTTTCTGTGCTGCTGTGACCTTCGTAGGATGACCTTCTTGCTTTTGCAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR GCA 90 bp TTTGCAAAAGCAAGAAGGTCATCCTACGAAGGTCACAGCAGCACAGAAACTGAGGACTCAGCCCCAGCCTaGCTTGGACTCTCTCAGGAC +
Preference number: 2 (lower is better)
Translates to: FAKARRSSYEGHSSTETEDSAPA*LGLSQD
Trigger: GTCCTGAGAGAGTCCAAGGCAGGCTGGGGCTGAGTC...CTCAGTTTCTGTGCTGCTGTGACCTTCGTAGGATGACCTTCTTGCTTTTGCAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR CCA 90 bp GCATTTAAGTTCCAGGCCAGCCTGAAACACATAGTGAGAACCCTGACTCCAAAAAGCCCCAGCCTGCCTTaGACTCTCTCAGGACCCATG +
Preference number: 2 (lower is better)
Translates to: AFKFQASLKHIVRTLTPKSPSLP*TLSGPM
Trigger: CATGGGTCCTGAGAGAGTCCAAGGCAGGCTGGGGCT...TTTTGGAGTCAGGGTTCTCACTATGTGTTTCAGGCTGGCCTGGAACTTAAATGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR TCA 90 bp TGGTGTCGGTTAGACAATGGGAGGAGTGGAAGCAGCACTAACGATGACAGAAGCCTGATGGACCAAAAGTaGGCCAAAGGGAACCACAAC +
Preference number: 2 (lower is better)
Translates to: WCRLDNGRSGSSTNDDRSLMDQK*AKGNHN
Trigger: GTTGTGGTTCCCTTTGGCTCACTTTTGGTCCATCAG...GCTTCTGTCATCGTTAGTGCTGCTTCCACTCCTCCCATTGTCTAACCGACACCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR CCA 90 bp CCAGGCAGAAGGACAGGAGCATTCTCTCGTTTAATGTCTTTGCTGTTGGGAACGCAAAGCTGGGTGTGGTaGCACATGCCTGTTTTCCCA +
Preference number: 2 (lower is better)
Translates to: PGRRTGAFSRLMSLLLGTQSWVW*HMPVFP
Trigger: TGGGAAAACAGGCATGTGCCACCACACCCAGCTTTG...CGTTCCCAACAGCAAAGACATTAAACGAGAGAATGCTCCTGTCCTTCTGCCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR TCA 90 bp CCAGGCAGAAGGACAGGAGCATTCTCTCGTTTAATGTCTTTGCTGTTGGGAACGCTGAGACTGCTCACCTaGCTCATCGTCTGCTCTTAT +
Preference number: 2 (lower is better)
Translates to: PGRRTGAFSRLMSLLLGTLRLLT*LIVCSY
Trigger: ATAAGAGCAGACGATGAGTCAGGTGAGCAGTCTCAG...CGTTCCCAACAGCAAAGACATTAAACGAGAGAATGCTCCTGTCCTTCTGCCTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR GCA 90 bp TGGTGTCGGTTAGACAATGGGAGGAGTGGAAGCAGCACTAACGATGACAGAAGCAGTGTCTCCAGGCATTaGCAAATGCCAAGTGAAGGA +
Preference number: 2 (lower is better)
Translates to: WCRLDNGRSGSSTNDDRSSVSRH*QMPSEG
Trigger: TCCTTCACTTGGCATTTGGCAATGCCTGGAGACACT...GCTTCTGTCATCGTTAGTGCTGCTTCCACTCCTCCCATTGTCTAACCGACACCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR GCA 90 bp GGCCCACTTCCTTTTGCCCATAATCCTTTTAGGCTTGCAGAGTCCCACACTAGTTGCTCTGTGAATGGCTaGTTGGTTTCCATCCTAGGC +
Preference number: 2 (lower is better)
Translates to: GPLPFAHNPFRLAESHTSCSVNG*LVSILG
Trigger: GCCTAGGATGGAAACCAAGCAGCCATTCACAGAGCA...ACTAGTGTGGGACTCTGCAAGCCTAAAAGGATTATGGGCAAAAGGAAGTGGGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR GCA 90 bp TTTGCAAAAGCAAGAAGGTCATCCTACGAAGGTCACAGCAGCACAGAAACTGAGCGTCCCTCTGACCGCTaGTCTGACTGCTCTGTGAAT +
Preference number: 2 (lower is better)
Translates to: FAKARRSSYEGHSSTETERPSDR*SDCSVN
Trigger: ATTCACAGAGCAGTCAGAGCAGCGGTCAGAGGGACG...CTCAGTTTCTGTGCTGCTGTGACCTTCGTAGGATGACCTTCTTGCTTTTGCAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR CAA 90 bp GACAAGGGTTTGGCCCACTTCCTTTTGCCCATAATCCTTTTAGGCTaGCAGAGTCCCACACTAGTCTACTCTCCTTACTGCAAGGAGGAA +
Preference number: 2 (lower is better)
Translates to: DKGLAHFLLPIILLG*QSPTLVYSPYCKEE
Trigger: TTCCTCCTTGCAGTAAGGAGAGTAGACTAGTGTGGGACTCTGCAAGCCTAAAAGGATTATGGGCAAAAGGAAGTGGGCCAAACCCTTGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR TCA 90 bp GGCCCACTTCCTTTTGCCCATAATCCTTTTAGGCTTGCAGAGTCCCACACTAGTTACTGCACATTACCCTaGTGGACCAAAAGTGAGCCA +
Preference number: 2 (lower is better)
Translates to: GPLPFAHNPFRLAESHTSYCTLP*WTKSEP
Trigger: TGGCTCACTTTTGGTCCATCAGGGTAATGTGCAGTA...ACTAGTGTGGGACTCTGCAAGCCTAAAAGGATTATGGGCAAAAGGAAGTGGGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR CAA 90 bp GCCAGCTGCTCAGAACACACAGTACAGAATACAGACGCTGTGCATTaGGAGAGTCCTAACACAACAGTCAGCAACTGTGAAGAATCACAA +
Preference number: 2 (lower is better)
Translates to: ASCSEHTVQNTDAVH*ESPNTTVSNCEESQ
Trigger: TTGTGATTCTTCACAGTTGCTGACTGTTGTGTTAGGACTCTCCAAATGCACAGCGTCTGTATTCTGTACTGTGTGTTCTGAGCAGCTGGC
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR TCA 90 bp GGCCCACTTCCTTTTGCCCATAATCCTTTTAGGCTTGCAGAGTCCCACACTAGTTGGACAGTGCCAGTATaGCTGAAAATCAAGTACTCA +
Preference number: 2 (lower is better)
Translates to: GPLPFAHNPFRLAESHTSWTVPV*LKIKYS
Trigger: TGAGTACTTGATTTTCAGTCATACTGGCACTGTCCA...ACTAGTGTGGGACTCTGCAAGCCTAAAAGGATTATGGGCAAAAGGAAGTGGGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR TCA 90 bp GGCCCACTTCCTTTTGCCCATAATCCTTTTAGGCTTGCAGAGTCCCACACTAGTATGCCTACTTGGGAATaGTCCTTCTCATCCTATAGT +
Preference number: 2 (lower is better)
Translates to: GPLPFAHNPFRLAESHTSMPTWE*SFSSYS
Trigger: ACTATAGGATGAGAAGGATCATTCCCAAGTAGGCAT...ACTAGTGTGGGACTCTGCAAGCCTAAAAGGATTATGGGCAAAAGGAAGTGGGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR GCA 90 bp GCACACACTCATGACTCTCAGACACTCAACAAGTATTGGTCATATAAATCAGTGGACCGCTGCTCTGACTaGTCTGTGAATGGCTGCTTG +
Preference number: 2 (lower is better)
Translates to: AHTHDSQTLNKYWSYKSVDRCSD*SVNGCL
Trigger: CAAGCAGCCATTCACAGAGCAGTCAGAGCAGCGGTC...CACTGATTTATATGACCAATACTTGTTGAGTGTCTGAGAGTCATGAGTGTGTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR GCA 90 bp GCACACACTCATGACTCTCAGACACTCAACAAGTATTGGTCATATAAATCAGTGGAGATGGCAGGATCCTaGCCAGCACAGTCTTTCCGT +
Preference number: 2 (lower is better)
Translates to: AHTHDSQTLNKYWSYKSVEMAGS*PAQSFR
Trigger: ACGGAAAGACTGTGCTGGGCAGGATCCTGCCATCTC...CACTGATTTATATGACCAATACTTGTTGAGTGTCTGAGAGTCATGAGTGTGTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR CCA 90 bp ACACATCAGTGGCCAAATGACGTTAATAAGATTGGCACACATAAGAACGTATGTTGGCAGGAGAACTCCTaGGTGGGGAGTCCTTGTGCA +
Preference number: 2 (lower is better)
Translates to: THQWPNDVNKIGTHKNVCWQENS*VGSPCA
Trigger: TGCACAAGGACTCCCCACCCAGGAGTTCTCCTGCCA...ACATACGTTCTTATGTGTGCCAATCTTATTAACGTCATTTGGCCACTGATGTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR CAA 90 bp ACGCCACCACATCCTTTTAGAAGGTTTCCATTGAGTACAGTAACATaGTCAGACAGAAACCTAGTTTCCTACACTTCCTGCCAGCTGCTC +
Preference number: 2 (lower is better)
Translates to: TPPHPFRRFPLSTVT*SDRNLVSYTSCQLL
Trigger: GAGCAGCTGGCAGGAAGTGTAGGAAACTAGGTTTCTGTCTGACAATGTTACTGTACTCAATGGAAACCTTCTAAAAGGATGTGGTGGCGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR TCA 90 bp TTTGCAAAAGCAAGAAGGTCATCCTACGAAGGTCACAGCAGCACAGAAACTGAGCCAAGAACAAGGTTTTaGCTTCATGACAGGAGCGTT +
Preference number: 2 (lower is better)
Translates to: FAKARRSSYEGHSSTETEPRTRF*LHDRSV
Trigger: AACGCTCCTGTCATGAAGTCAAAACCTTGTTCTTGG...CTCAGTTTCTGTGCTGCTGTGACCTTCGTAGGATGACCTTCTTGCTTTTGCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR TCA 90 bp TTTGCAAAAGCAAGAAGGTCATCCTACGAAGGTCACAGCAGCACAGAAACTGAGTTTTCAGACCCCAAATaGAACCACTGGTGTGAACTC +
Preference number: 2 (lower is better)
Translates to: FAKARRSSYEGHSSTETEFSDPK*NHWCEL
Trigger: GAGTTCACACCAGTGGTTTCATTTGGGGTCTGAAAA...CTCAGTTTCTGTGCTGCTGTGACCTTCGTAGGATGACCTTCTTGCTTTTGCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR TCA 90 bp TTTGCAAAAGCAAGAAGGTCATCCTACGAAGGTCACAGCAGCACAGAAACTGAGCAGTGCCAGTATGACTaGAAATCAAGTACTCAACCC +
Preference number: 2 (lower is better)
Translates to: FAKARRSSYEGHSSTETEQCQYD*KSSTQP
Trigger: GGGTTGAGTACTTGATTTTCAGTCATACTGGCACTG...CTCAGTTTCTGTGCTGCTGTGACCTTCGTAGGATGACCTTCTTGCTTTTGCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR GCA 90 bp TTTGCAAAAGCAAGAAGGTCATCCTACGAAGGTCACAGCAGCACAGAAACTGAGCCAGGCATTGCCAAATaGCAAGTGAAGGAAAATGAC +
Preference number: 2 (lower is better)
Translates to: FAKARRSSYEGHSSTETEPGIAK*QVKEND
Trigger: GTCATTTTCCTTCACTTGGCATTTGGCAATGCCTGG...CTCAGTTTCTGTGCTGCTGTGACCTTCGTAGGATGACCTTCTTGCTTTTGCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR CCA 90 bp GGGAGGAGTGGAAGCAGCACTAACGATGACAGAAGCAAAGAGTGGCTCACAGCATGGTACCTTCACAACTaGTGTGAAATAAATTCACAT +
Preference number: 2 (lower is better)
Translates to: GRSGSSTNDDRSKEWLTAWYLHN*CEINSH
Trigger: ATGTGAATTTATTTCACACCAGTTGTGAAGGTACCA...TGCTGTGAGCCACTCTTTGCTTCTGTCATCGTTAGTGCTGCTTCCACTCCTCCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR CAA 90 bp CTAGACAATATGGTTTTGATTGACAAGGGTTTGGCCCACTTCCTTTaGCCCATAATCCTTTTAGGCTTGCAGAGTCCCACACTAGTCTAC +
Preference number: 2 (lower is better)
Translates to: LDNMVLIDKGLAHFL*PIILLGLQSPTLVY
Trigger: GTAGACTAGTGTGGGACTCTGCAAGCCTAAAAGGATTATGGGCAAAAGGAAGTGGGCCAAACCCTTGTCAATCAAAACCATATTGTCTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR TCA 90 bp ACTGGAAATACCTGGCAGTGTTTTAACCTCCCCACTGCTAGTAAACACTATGTTTCATCTGTTATGAGCTaGGACTGCTCACCTGACTCA +
Preference number: 2 (lower is better)
Translates to: TGNTWQCFNLPTASKHYVSSVMS*DCSPDS
Trigger: TGAGTCAGGTGAGCAGTCTCAGCTCATAACAGATGA...AACATAGTGTTTACTAGCAGTGGGGAGGTTAAAACACTGCCAGGTATTTCCAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR GCA 90 bp TGGTGTCGGTTAGACAATGGGAGGAGTGGAAGCAGCACTAACGATGACAGAAGCAACTATGTACTAAAGTaGTTTATAGCTCTGAACCAC +
Preference number: 2 (lower is better)
Translates to: WCRLDNGRSGSSTNDDRSNYVLK*FIALNH
Trigger: GTGGTTCAGAGCTATAAAGCACTTTAGTACATAGTT...GCTTCTGTCATCGTTAGTGCTGCTTCCACTCCTCCCATTGTCTAACCGACACCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR CCA 90 bp ACTGGAAATACCTGGCAGTGTTTTAACCTCCCCACTGCTAGTAAACACTATGTTGTACCTTGCCAGTTATaGCAACAAAGTGTCTCCAGG +
Preference number: 2 (lower is better)
Translates to: TGNTWQCFNLPTASKHYVVPCQL*QQSVSR
Trigger: CCTGGAGACACTTTGTTGCCATAACTGGCAAGGTAC...AACATAGTGTTTACTAGCAGTGGGGAGGTTAAAACACTGCCAGGTATTTCCAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR CCA 90 bp AAAACAATCTGGGACTGTGTTGTATCGGAAGAGCAGGTTCTGACGTGGGATATAACAAAGTCAGCAGTCTaGCCGTTTTCTAGCCACAAA +
Preference number: 2 (lower is better)
Translates to: KTIWDCVVSEEQVLTWDITKSAV*PFSSHK
Trigger: TTTGTGGCTAGAAAACGGCCAGACTGCTGACTTTGT...TATATCCCACGTCAGAACCTGCTCTTCCGATACAACACAGTCCCAGATTGTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR CCA 90 bp GGCCCACTTCCTTTTGCCCATAATCCTTTTAGGCTTGCAGAGTCCCACACTAGTATCTACACACATCAGTaGCCAAATGACGTTAATAAG +
Preference number: 2 (lower is better)
Translates to: GPLPFAHNPFRLAESHTSIYTHQ*PNDVNK
Trigger: CTTATTAACGTCATTTGGCCACTGATGTGTGTAGAT...ACTAGTGTGGGACTCTGCAAGCCTAAAAGGATTATGGGCAAAAGGAAGTGGGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR TCA 90 bp TTTGCAAAAGCAAGAAGGTCATCCTACGAAGGTCACAGCAGCACAGAAACTGAGCGTCTGTGTTTTAGCTaGATTCATTCATTGGCTTCA +
Preference number: 2 (lower is better)
Translates to: FAKARRSSYEGHSSTETERLCFS*IHSLAS
Trigger: TGAAGCCAATGAATGAATTCAGCTAAAACACAGACG...CTCAGTTTCTGTGCTGCTGTGACCTTCGTAGGATGACCTTCTTGCTTTTGCAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR TCA 90 bp GCATTTAAGTTCCAGGCCAGCCTGAAACACATAGTGAGAACCCTGACTCCAAAATCCACATTTTTCTACTaGCTGGCAAATGTTGTCTCT +
Preference number: 2 (lower is better)
Translates to: AFKFQASLKHIVRTLTPKSTFFY*LANVVS
Trigger: AGAGACAACATTTGCCAGTCAGTAGAAAAATGTGGA...TTTTGGAGTCAGGGTTCTCACTATGTGTTTCAGGCTGGCCTGGAACTTAAATGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR TCA 90 bp ACACATCAGTGGCCAAATGACGTTAATAAGATTGGCACACATAAGAACGTATGTCCAAGTGAAGGAAAATaGCTCCCCACCACAAACCTC +
Preference number: 2 (lower is better)
Translates to: THQWPNDVNKIGTHKNVCPSEGK*LPTTNL
Trigger: GAGGTTTGTGGTGGGGAGTCATTTTCCTTCACTTGG...ACATACGTTCTTATGTGTGCCAATCTTATTAACGTCATTTGGCCACTGATGTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR TCA 90 bp GCACACACTCATGACTCTCAGACACTCAACAAGTATTGGTCATATAAATCAGTGTTGCCAAATGCCAAGTaGAGGAAAATGACTCCCCAC +
Preference number: 2 (lower is better)
Translates to: AHTHDSQTLNKYWSYKSVLPNAK*RKMTPH
Trigger: GTGGGGAGTCATTTTCCTTCACTTGGCATTTGGCAA...CACTGATTTATATGACCAATACTTGTTGAGTGTCTGAGAGTCATGAGTGTGTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR TCA 90 bp TTTGCAAAAGCAAGAAGGTCATCCTACGAAGGTCACAGCAGCACAGAAACTGAGTGCCGGGTAGGATCTTaGTACATTAAAACCATATCT +
Preference number: 2 (lower is better)
Translates to: FAKARRSSYEGHSSTETECRVGS*YIKTIS
Trigger: AGATATGGTTTTAATGTATCAAGATCCTACCCGGCA...CTCAGTTTCTGTGCTGCTGTGACCTTCGTAGGATGACCTTCTTGCTTTTGCAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR TCA 90 bp GCATTTAAGTTCCAGGCCAGCCTGAAACACATAGTGAGAACCCTGACTCCAAAAGTGCAGGTATCTTTCTaGAGAGTGTTTGTATCTCTT +
Preference number: 2 (lower is better)
Translates to: AFKFQASLKHIVRTLTPKVQVSF*RVFVSL
Trigger: AAGAGATACAAACACTCTTCAGAAAGATACCTGCAC...TTTTGGAGTCAGGGTTCTCACTATGTGTTTCAGGCTGGCCTGGAACTTAAATGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR CCA 90 bp GTAGACTTTATTCCTAACACAAATAACTTTACGCCACCACATCCTTTTAGAAGGGACAGAAGCAAAGAGTaGCTCACAGCACACCTTCCC +
Preference number: 2 (lower is better)
Translates to: VDFIPNTNNFTPPHPFRRDRSKE*LTAHLP
Trigger: GGGAAGGTGTGCTGTGAGCCACTCTTTGCTTCTGTC...CCTTCTAAAAGGATGTGGTGGCGTAAAGTTATTTGTGTTAGGAATAAAGTCTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR TCA 90 bp AAAACAATCTGGGACTGTGTTGTATCGGAAGAGCAGGTTCTGACGTGGGATATATCTAATGGAGTAAGGTaGGACTCAAATGAAAGCCAA +
Preference number: 2 (lower is better)
Translates to: KTIWDCVVSEEQVLTWDISNGVR*DSNESQ
Trigger: TTGGCTTTCATTTGAGTCTCACCTTACTCCATTAGA...TATATCCCACGTCAGAACCTGCTCTTCCGATACAACACAGTCCCAGATTGTTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR TCA 90 bp TTAACACTCCAATTACCATTCATTTATGTCCATTCCACAGTTCAGAGGGTTACTGCAACACTGAACTCCTaGGTTCTCCAACAAACACAG +
Preference number: 2 (lower is better)
Translates to: LTLQLPFIYVHSTVQRVTATLNS*VLQQTQ
Trigger: CTGTGTTTGTTGGAGAACTCAGGAGTTCAGTGTTGC...AGTAACCCTCTGAACTGTGGAATGGACATAAATGAATGGTAATTGGAGTGTTAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR GCA 90 bp AAAACAATCTGGGACTGTGTTGTATCGGAAGAGCAGGTTCTGACGTGGGATATATTGGCTTCACATGTCTaGTTCCAAATACAACAATGT +
Preference number: 2 (lower is better)
Translates to: KTIWDCVVSEEQVLTWDILASHV*FQIQQC
Trigger: ACATTGTTGTATTTGGAAGCAGACATGTGAAGCCAA...TATATCCCACGTCAGAACCTGCTCTTCCGATACAACACAGTCCCAGATTGTTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR GCA 90 bp GCACACACTCATGACTCTCAGACACTCAACAAGTATTGGTCATATAAATCAGTGTCAACTACTTTTGTTTaGCCTATGAGAGGTCTTCCC +
Preference number: 2 (lower is better)
Translates to: AHTHDSQTLNKYWSYKSVSTTFV*PMRGLP
Trigger: GGGAAGACCTCTCATAGGGCAAACAAAAGTAGTTGA...CACTGATTTATATGACCAATACTTGTTGAGTGTCTGAGAGTCATGAGTGTGTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR GCA 90 bp GCATTTAAGTTCCAGGCCAGCCTGAAACACATAGTGAGAACCCTGACTCCAAAAACCAATCCATTAAAATaGTATCAGTTACGCCTTAAC +
Preference number: 2 (lower is better)
Translates to: AFKFQASLKHIVRTLTPKTNPLK*YQLRLN
Trigger: GTTAAGGCGTAACTGATAGCATTTTAATGGATTGGT...TTTTGGAGTCAGGGTTCTCACTATGTGTTTCAGGCTGGCCTGGAACTTAAATGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR GCA 90 bp AAAACAATCTGGGACTGTGTTGTATCGGAAGAGCAGGTTCTGACGTGGGATATATTACAGTCCAGCATGTaGAATACTCAACTTCTCATA +
Preference number: 2 (lower is better)
Translates to: KTIWDCVVSEEQVLTWDILQSSM*NTQLLI
Trigger: TATGAGAAGTTGAGTATTGCACATGCTGGACTGTAA...TATATCCCACGTCAGAACCTGCTCTTCCGATACAACACAGTCCCAGATTGTTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR CCA 90 bp TTTGCAAAAGCAAGAAGGTCATCCTACGAAGGTCACAGCAGCACAGAAACTGAGACAGATTTGTATACCTaGTTGTTTCCAGCTGAATTT +
Preference number: 2 (lower is better)
Translates to: FAKARRSSYEGHSSTETETDLYT*LFPAEF
Trigger: AAATTCAGCTGGAAACAACCAGGTATACAAATCTGT...CTCAGTTTCTGTGCTGCTGTGACCTTCGTAGGATGACCTTCTTGCTTTTGCAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR CCA 90 bp AGATACTTGTACTCTAATCCTCTTGTTCATATCTTTGGAGTCCATAATTATGGCTTAAATGGGCAAAGCTaGGTGTGGTGGCACATGCCT +
Preference number: 2 (lower is better)
Translates to: RYLYSNPLVHIFGVHNYGLNGQS*VWWHMP
Trigger: AGGCATGTGCCACCACACCCAGCTTTGCCCATTTAA...GCCATAATTATGGACTCCAAAGATATGAACAAGAGGATTAGAGTACAAGTATCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR CCA 90 bp GCACACACTCATGACTCTCAGACACTCAACAAGTATTGGTCATATAAATCAGTGTGTACTAGCTACTTATaGAAAATGTCCTGGCATGCC +
Preference number: 2 (lower is better)
Translates to: AHTHDSQTLNKYWSYKSVCTSYL*KMSWHA
Trigger: GGCATGCCAGGACATTTTCCATAAGTAGCTAGTACA...CACTGATTTATATGACCAATACTTGTTGAGTGTCTGAGAGTCATGAGTGTGTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR CAA 90 bp CAACACAAATCTACACACATCAGTGGCCAAATGACGTTAATAAGATaGGCACACATAAGAACGTATGTCTGCAGTGTCTATATAGCTCCA +
Preference number: 2 (lower is better)
Translates to: QHKSTHISGQMTLIR*AHIRTYVCSVYIAP
Trigger: TGGAGCTATATAGACACTGCAGACATACGTTCTTATGTGTGCCAATCTTATTAACGTCATTTGGCCACTGATGTGTGTAGATTTGTGTTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR TCA 90 bp ACACATCAGTGGCCAAATGACGTTAATAAGATTGGCACACATAAGAACGTATGTATGAAACCACTGGTGTaGACTCTGCCATTAATCAAG +
Preference number: 2 (lower is better)
Translates to: THQWPNDVNKIGTHKNVCMKPLV*TLPLIK
Trigger: CTTGATTAATGGCAGAGTTCACACCAGTGGTTTCAT...ACATACGTTCTTATGTGTGCCAATCTTATTAACGTCATTTGGCCACTGATGTGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR TCA 90 bp TTAACACTCCAATTACCATTCATTTATGTCCATTCCACAGTTCAGAGGGTTACTAGTACCTCTGAGAAATaGCTTGGTTCCCTAGAGCTA +
Preference number: 2 (lower is better)
Translates to: LTLQLPFIYVHSTVQRVTSTSEK*LGSLEL
Trigger: TAGCTCTAGGGAACCAAGTCATTTCTCAGAGGTACT...AGTAACCCTCTGAACTGTGGAATGGACATAAATGAATGGTAATTGGAGTGTTAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR CAA 90 bp CTGTGTTGTATCGGAAGAGCAGGTTCTGACGTGGGATATAGATACTaGTACTCTAATCCTCTTGTTCATATCTTTGGAGTCCATAATTAT +
Preference number: 2 (lower is better)
Translates to: LCCIGRAGSDVGYRY*YSNPLVHIFGVHNY
Trigger: ATAATTATGGACTCCAAAGATATGAACAAGAGGATTAGAGTACAAGTATCTATATCCCACGTCAGAACCTGCTCTTCCGATACAACACAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR TCA 90 bp GCACACACTCATGACTCTCAGACACTCAACAAGTATTGGTCATATAAATCAGTGAAGTGGCCAAATTACTaGCACCTTCATGTTTTAAGT +
Preference number: 2 (lower is better)
Translates to: AHTHDSQTLNKYWSYKSVKWPNY*HLHVLS
Trigger: ACTTAAAACATGAAGGTGTCAGTAATTTGGCCACTT...CACTGATTTATATGACCAATACTTGTTGAGTGTCTGAGAGTCATGAGTGTGTGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR TCA 90 bp GTAGACTTTATTCCTAACACAAATAACTTTACGCCACCACATCCTTTTAGAAGGTCTGGTAATACAGACTaGGGTACAAACAAACACCAC +
Preference number: 2 (lower is better)
Translates to: VDFIPNTNNFTPPHPFRRSGNTD*GTNKHH
Trigger: GTGGTGTTTGTTTGTACCTCAGTCTGTATTACCAGA...CCTTCTAAAAGGATGTGGTGGCGTAAAGTTATTTGTGTTAGGAATAAAGTCTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR CCA 90 bp AGATACTTGTACTCTAATCCTCTTGTTCATATCTTTGGAGTCCATAATTATGGCGAGTCTGCAGCATACTaGGTCATCTGCCAATCTATT +
Preference number: 2 (lower is better)
Translates to: RYLYSNPLVHIFGVHNYGESAAY*VICQSI
Trigger: AATAGATTGGCAGATGACCCAGTATGCTGCAGACTC...GCCATAATTATGGACTCCAAAGATATGAACAAGAGGATTAGAGTACAAGTATCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR CCA 90 bp GTAGACTTTATTCCTAACACAAATAACTTTACGCCACCACATCCTTTTAGAAGGTTATGGAAAATGTCCTaGCATGCCTACTTGGGAATG +
Preference number: 2 (lower is better)
Translates to: VDFIPNTNNFTPPHPFRRLWKMS*HAYLGM
Trigger: CATTCCCAAGTAGGCATGCCAGGACATTTTCCATAA...CCTTCTAAAAGGATGTGGTGGCGTAAAGTTATTTGTGTTAGGAATAAAGTCTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR CAA 90 bp AACACAAATAACTTTACGCCACCACATCCTTTTAGAAGGTTTCCATaGAGTACAGTAACATTGTCAGACAGAAACCTAGTTTCCTACACT +
Preference number: 2 (lower is better)
Translates to: NTNNFTPPHPFRRFP*STVTLSDRNLVSYT
Trigger: AGTGTAGGAAACTAGGTTTCTGTCTGACAATGTTACTGTACTCAATGGAAACCTTCTAAAAGGATGTGGTGGCGTAAAGTTATTTGTGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR CCA 90 bp TTAACACTCCAATTACCATTCATTTATGTCCATTCCACAGTTCAGAGGGTTACTAAGAGATGCTTACACTaGAAATACCTGGCAGTGTTT +
Preference number: 2 (lower is better)
Translates to: LTLQLPFIYVHSTVQRVTKRCLH*KYLAVF
Trigger: AAACACTGCCAGGTATTTCCAGTGTAAGCATCTCTT...AGTAACCCTCTGAACTGTGGAATGGACATAAATGAATGGTAATTGGAGTGTTAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR CCA 90 bp TTAACACTCCAATTACCATTCATTTATGTCCATTCCACAGTTCAGAGGGTTACTTTTTACATTTACTATTaGCCTTCCATACCCCTACCT +
Preference number: 2 (lower is better)
Translates to: LTLQLPFIYVHSTVQRVTFYIYY*PSIPLP
Trigger: AGGTAGGGGTATGGAAGGCCAATAGTAAATGTAAAA...AGTAACCCTCTGAACTGTGGAATGGACATAAATGAATGGTAATTGGAGTGTTAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR CAA 90 bp TTACAGTCCAGCATGTGCAATACTCAACTTCTCATATGCTGTAGATaGTGCCTCTTAATACTTTCTAAGGCAATAGTCATAGATGTTTTT +
Preference number: 2 (lower is better)
Translates to: LQSSMCNTQLLICCR*CLLILSKAIVIDVF
Trigger: AAAAACATCTATGACTATTGCCTTAGAAAGTATTAAGAGGCACAATCTACAGCATATGAGAAGTTGAGTATTGCACATGCTGGACTGTAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR GCA 72 bp TCAGCCCCAGCCTGCCTTGGACTCTCTCAGGACCCATaGAGAAGGTGCGTCCTGAGAGCACGCCTGGCACTG +
Preference number: 3 (lower is better)
Translates to: SAPACLGLSQDP*RRCVLRARLAL
Trigger: CAGTGCCAGGCGTGCTCTCAGGACGCACCTTCTGCATGGGTCCTGAGAGAGTCCAAGGCAGGCTGGGGCTGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR GCA 72 bp GCCTGCCTTGGACTCTCTCAGGACCCATGCAGAAGGTaGGTCCTGAGAGCACGCCTGGCACTGCTAGTGGAT +
Preference number: 3 (lower is better)
Translates to: ACLGLSQDPCRR*VLRARLALLVD
Trigger: ATCCACTAGCAGTGCCAGGCGTGCTCTCAGGACGCACCTTCTGCATGGGTCCTGAGAGAGTCCAAGGCAGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR GCA 72 bp TCCGCCCTACACCGTCCCTCTGACCGCTGCTCTGACTaGTCTGTGAATGGCTGCTTGGTTTCCATCCTAGGC +
Preference number: 3 (lower is better)
Translates to: SALHRPSDRCSD*SVNGCLVSILG
Trigger: GCCTAGGATGGAAACCAAGCAGCCATTCACAGAGCAGTCAGAGCAGCGGTCAGAGGGACGGTGTAGGGCGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR GCA 72 bp AAGCCCTCATCCGCCCTACACCGTCCCTCTGACCGCTaGTCTGACTGCTCTGTGAATGGCTGCTTGGTTTCC +
Preference number: 3 (lower is better)
Translates to: KPSSALHRPSDR*SDCSVNGCLVS
Trigger: GGAAACCAAGCAGCCATTCACAGAGCAGTCAGAGCAGCGGTCAGAGGGACGGTGTAGGGCGGATGAGGGCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR TCA 72 bp GCTGAGACTGCTCACCTGACTCATCGTCTGCTCTTATaGAGCCCTCATCCGCCCTACACCGTCCCTCTGACC +
Preference number: 3 (lower is better)
Translates to: AETAHLTHRLLL*SPHPPYTVPLT
Trigger: GGTCAGAGGGACGGTGTAGGGCGGATGAGGGCTTCATAAGAGCAGACGATGAGTCAGGTGAGCAGTCTCAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR CCA 72 bp GCACAGAGAGGACAACCCTGGACCCCACAGCACTCATaGTGTCGGTTAGACAATGGGAGGAGTGGAAGCAGC +
Preference number: 3 (lower is better)
Translates to: AQRGQPWTPQHS*CRLDNGRSGSS
Trigger: GCTGCTTCCACTCCTCCCATTGTCTAACCGACACCATGAGTGCTGTGGGGTCCAGGGTTGTCCTCTCTGTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR GCA 72 bp CCTGCAACCCCTGCCCACTGGATGCTAGTAGTACCTTaGCAGTTATGGCAACAAAGTGTCTCCAGGCATTGC +
Preference number: 3 (lower is better)
Translates to: PATPAHWMLVVP*QLWQQSVSRHC
Trigger: GCAATGCCTGGAGACACTTTGTTGCCATAACTGGCAAGGTACTACTAGCATCCAGTGGGCAGGGGTTGCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR GCA 72 bp CCCTCTGACCGCTGCTCTGACTGCTCTGTGAATGGCTaGTTGGTTTCCATCCTAGGCACTTTTGTCATGTGG +
Preference number: 3 (lower is better)
Translates to: PSDRCSDCSVNG*LVSILGTFVMW
Trigger: CCACATGACAAAAGTGCCTAGGATGGAAACCAAGCAGCCATTCACAGAGCAGTCAGAGCAGCGGTCAGAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR TCA 72 bp AGGACCATCATCTGTTATGAGCTGAGACTGCTCACCTaGCTCATCGTCTGCTCTTATGAAGCCCTCATCCGC +
Preference number: 3 (lower is better)
Translates to: RTIICYELRLLT*LIVCSYEALIR
Trigger: GCGGATGAGGGCTTCATAAGAGCAGACGATGAGTCAGGTGAGCAGTCTCAGCTCATAACAGATGATGGTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR TCA 72 bp TGCAACCAACAGCTGTCAGAGGACCATCATCTGTTATaGGCTGAGACTGCTCACCTGACTCATCGTCTGCTC +
Preference number: 3 (lower is better)
Translates to: CNQQLSEDHHLL*AETAHLTHRLL
Trigger: GAGCAGACGATGAGTCAGGTGAGCAGTCTCAGCTCATAACAGATGATGGTCCTCTGACAGCTGTTGGTTGCA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR TCA 72 bp AAGGTCATCCTACGAAGGTCACAGCAGCACAGAAACTaGGGGAGGGCTACATCTAGGGAGAAGTGCAAACAC +
Preference number: 3 (lower is better)
Translates to: KVILRRSQQHRN*GRATSREKCKH
Trigger: GTGTTTGCACTTCTCCCTAGATGTAGCCCTCCCTCAGTTTCTGTGCTGCTGTGACCTTCGTAGGATGACCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR GCA 72 bp ACTGCTAGTGGATCTGCTCCAGCACCGGAAGGAAGTTaGTACTGGCAACGCAGAACGCATTTAAAGGCACAA +
Preference number: 3 (lower is better)
Translates to: TASGSAPAPEGS*YWQRRTHLKAQ
Trigger: TTGTGCCTTTAAATGCGTTCTGCGTTGCCAGTAGCAACTTCCTTCCGGTGCTGGAGCAGATCCACTAGCAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR CCA 72 bp CCTGCCCACTGGATGCTAGTAGTACCTTGCCAGTTATaGCAACAAAGTGTCTCCAGGCATTGCCAAATGCCA +
Preference number: 3 (lower is better)
Translates to: PAHWMLVVPCQL*QQSVSRHCQMP
Trigger: TGGCATTTGGCAATGCCTGGAGACACTTTGTTGCCATAACTGGCAAGGTACTACTAGCATCCAGTGGGCAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR CCA 72 bp ACAGTCTACTTAGCAGCACCTGCAACCCCTGCCCACTaGATGCTAGTAGTACCTTGCCAGTTATGGCAACAA +
Preference number: 3 (lower is better)
Translates to: TVYLAAPATPAH*MLVVPCQLWQQ
Trigger: TTGTTGCCATAACTGGCAAGGTACTACTAGCATCCAGTGGGCAGGGGTTGCAGGTGCTGCTAAGTAGACTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR CCA 72 bp AGTGGATCTGCTCCAGCACCGGAAGGAAGTTGCTACTaGCAACGCAGAACGCATTTAAAGGCACAAAGTCAG +
Preference number: 3 (lower is better)
Translates to: SGSAPAPEGSCY*QRRTHLKAQSQ
Trigger: CTGACTTTGTGCCTTTAAATGCGTTCTGCGTTGCCAGTAGCAACTTCCTTCCGGTGCTGGAGCAGATCCACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR CCA 72 bp AGTGGAAGCAGCACTAACGATGACAGAAGCAAAGAGTaGCTCACAGCACACCTTCCCCAGCAACCAACAAGA +
Preference number: 3 (lower is better)
Translates to: SGSSTNDDRSKE*LTAHLPQQPTR
Trigger: TCTTGTTGGTTGCTGGGGAAGGTGTGCTGTGAGCCACTCTTTGCTTCTGTCATCGTTAGTGCTGCTTCCACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR CAA 90 bp GGGAGGAGTGGAAGCAGCACTAACGATGACAGAAGCAAAGAGTGGCTCACAGCAGATGCTAGTAGTACCTaGCCAGTTATGGCAACAAAG +
Preference number: 3 (lower is better)
Translates to: GRSGSSTNDDRSKEWLTADASST*PVMATK
Trigger: CTTTGTTGCCATAACTGGCAAGGTACTACTAGCATC...TGCTGTGAGCCACTCTTTGCTTCTGTCATCGTTAGTGCTGCTTCCACTCCTCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR CAA 90 bp CCAGGCAGAAGGACAGGAGCATTCTCTCGTTTAATGTCTTTGCTGTTGGGAACGCAATCTGGGACTGTGTaGTATCGGAAGAGCAGGTTC +
Preference number: 3 (lower is better)
Translates to: PGRRTGAFSRLMSLLLGTQSGTV*YRKSRF
Trigger: GAACCTGCTCTTCCGATACAACACAGTCCCAGATTG...CGTTCCCAACAGCAAAGACATTAAACGAGAGAATGCTCCTGTCCTTCTGCCTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR CCA 72 bp GTGAGATGCGGTACATACTCCACTGTGTCTGGCTTCTaGGTAGGTTCTAATCACATGGGTTCCTCTCAACAT +
Preference number: 3 (lower is better)
Translates to: VRCGTYSTVSGF*VGSNHMGSSQH
Trigger: ATGTTGAGAGGAACCCATGTGATTAGAACCTACCCAGAAGCCAGACACAGTGGAGTATGTACCGCATCTCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR CAA 90 bp GGGAGGAGTGGAAGCAGCACTAACGATGACAGAAGCAAAGAGTGGCTCACAGCAATCACTTTCTTCTCTTaGTCTTCCATGTCAGTGATA +
Preference number: 3 (lower is better)
Translates to: GRSGSSTNDDRSKEWLTAITFFS*SSMSVI
Trigger: TATCACTGACATGGAAGACAAAGAGAAGAAAGTGAT...TGCTGTGAGCCACTCTTTGCTTCTGTCATCGTTAGTGCTGCTTCCACTCCTCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR CAA 90 bp TGGTGTCGGTTAGACAATGGGAGGAGTGGAAGCAGCACTAACGATGACAGAAGCGCACTTGGTTTAATGTaGAAAAATTTGCAAGTGGCC +
Preference number: 3 (lower is better)
Translates to: WCRLDNGRSGSSTNDDRSALGLM*KNLQVA
Trigger: GGCCACTTGCAAATTTTTCAACATTAAACCAAGTGC...GCTTCTGTCATCGTTAGTGCTGCTTCCACTCCTCCCATTGTCTAACCGACACCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR CAA 90 bp TGGTGTCGGTTAGACAATGGGAGGAGTGGAAGCAGCACTAACGATGACAGAAGCCTTTCTGAAGAGTGTTaGTATCTCTTCTGTACTGCA +
Preference number: 3 (lower is better)
Translates to: WCRLDNGRSGSSTNDDRSLSEEC*YLFCTA
Trigger: TGCAGTACAGAAGAGATACAAACACTCTTCAGAAAG...GCTTCTGTCATCGTTAGTGCTGCTTCCACTCCTCCCATTGTCTAACCGACACCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR TCA 72 bp GCAACAAAGTGTCTCCAGGCATTGCCAAATGCCAAGTaGAGGAAAATGACTCCCCACCACAAACCTCATTGT +
Preference number: 3 (lower is better)
Translates to: ATKCLQALPNAK*RKMTPHHKPHC
Trigger: ACAATGAGGTTTGTGGTGGGGAGTCATTTTCCTTCACTTGGCATTTGGCAATGCCTGGAGACACTTTGTTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR TCA 72 bp CCTGAGTTCTCCAACAAACACAGAACCACACACAGGTaGCTTTGCAAAAGCAAGAAGGTCATCCTACGAAGG +
Preference number: 3 (lower is better)
Translates to: PEFSNKHRTTHR*LCKSKKVILRR
Trigger: CCTTCGTAGGATGACCTTCTTGCTTTTGCAAAGTCACCTGTGTGTGGTTCTGTGTTTGTTGGAGAACTCAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR GCA 72 bp GCTGCTCAGAACACACAGTACAGAATACAGACGCTGTaGATTTGGAGAGTCCTAACACAACAGTCAGCAACT +
Preference number: 3 (lower is better)
Translates to: AAQNTQYRIQTL*IWRVLTQQSAT
Trigger: AGTTGCTGACTGTTGTGTTAGGACTCTCCAAATGCACAGCGTCTGTATTCTGTACTGTGTGTTCTGAGCAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR TCA 72 bp TCTTCTGTACTGCACATTACCCTGATGGACCAAAAGTaGGCCAAAGGGAACCACAACCACACTAAGAGACAA +
Preference number: 3 (lower is better)
Translates to: SSVLHITLMDQK*AKGNHNHTKRQ
Trigger: TTGTCTCTTAGTGTGGTTGTGGTTCCCTTTGGCTCACTTTTGGTCCATCAGGGTAATGTGCAGTACAGAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR TCA 72 bp AGAGTGTTTGTATCTCTTCTGTACTGCACATTACCCTaGTGGACCAAAAGTGAGCCAAAGGGAACCACAACC +
Preference number: 3 (lower is better)
Translates to: RVFVSLLYCTLP*WTKSEPKGTTT
Trigger: GGTTGTGGTTCCCTTTGGCTCACTTTTGGTCCATCAGGGTAATGTGCAGTACAGAAGAGATACAAACACTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR CCA 72 bp ACGCAGAACGCATTTAAAGGCACAAAGTCAGCAGTCTaGCCGTTTTCTAGCCACAAAGAAACATTGCAGTAC +
Preference number: 3 (lower is better)
Translates to: TQNAFKGTKSAV*PFSSHKETLQY
Trigger: GTACTGCAATGTTTCTTTGTGGCTAGAAAACGGCCAGACTGCTGACTTTGTGCCTTTAAATGCGTTCTGCGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR CCA 72 bp CAGAACACACAGTACAGAATACAGACGCTGTGCATTTaGAGAGTCCTAACACAACAGTCAGCAACTGTGAAG +
Preference number: 3 (lower is better)
Translates to: QNTQYRIQTLCI*RVLTQQSATVK
Trigger: CTTCACAGTTGCTGACTGTTGTGTTAGGACTCTCCAAATGCACAGCGTCTGTATTCTGTACTGTGTGTTCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR CAA 90 bp GGCCCACTTCCTTTTGCCCATAATCCTTTTAGGCTTGCAGAGTCCCACACTAGTGAGTTAACTAATTGTTaGTGCTTTGACTCTCAGACT +
Preference number: 3 (lower is better)
Translates to: GPLPFAHNPFRLAESHTSELTNC*CFDSQT
Trigger: AGTCTGAGAGTCAAAGCACAAACAATTAGTTAACTC...ACTAGTGTGGGACTCTGCAAGCCTAAAAGGATTATGGGCAAAAGGAAGTGGGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR GCA 72 bp TTAAGTTTCATAACTGTACTAGAGATGGCAGGATCCTaGCCAGCACAGTCTTTCCGTTTAATGACATGGCTC +
Preference number: 3 (lower is better)
Translates to: LSFITVLEMAGS*PAQSFRLMTWL
Trigger: GAGCCATGTCATTAAACGGAAAGACTGTGCTGGGCAGGATCCTGCCATCTCTAGTACAGTTATGAAACTTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR GCA 72 bp ACATTGTCAGACAGAAACCTAGTTTCCTACACTTCCTaGCAGCTGCTCAGAACACACAGTACAGAATACAGA +
Preference number: 3 (lower is better)
Translates to: TLSDRNLVSYTS*QLLRTHSTEYR
Trigger: TCTGTATTCTGTACTGTGTGTTCTGAGCAGCTGGCAGGAAGTGTAGGAAACTAGGTTTCTGTCTGACAATGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR GCA 72 bp ATTTTGAATGAACAACAGACCCAAATGTGTGTGAGATaGGGTACATACTCCACTGTGTCTGGCTTCTGGGTA +
Preference number: 3 (lower is better)
Translates to: ILNEQQTQMCVR*GTYSTVSGFWV
Trigger: TACCCAGAAGCCAGACACAGTGGAGTATGTACCGCATCTCACACACATTTGGGTCTGTTGTTCATTCAAAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR CCA 72 bp GTCAGCAACTGTGAAGAATCACAATATGCCAGGCATTaGTTCAACAACTCGGTCTACCTTTGCTCAGTAAGA +
Preference number: 3 (lower is better)
Translates to: VSNCEESQYARH*FNNSVYLCSVR
Trigger: TCTTACTGAGCAAAGGTAGACCGAGTTGTTGAACCAATGCCTGGCATATTGTGATTCTTCACAGTTGCTGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR TCA 72 bp ATAAAGGAACAAAAGAACCCAGCAATCCAGGTACCATaGTCTTGCTCAAGTAGAAGAGATGCCCTCACTCAT +
Preference number: 3 (lower is better)
Translates to: IKEQKNPAIQVP*SCSSRRDALTH
Trigger: ATGAGTGAGGGCATCTCTTCTACTTGAGCAAGATCATGGTACCTGGATTGCTGGGTTCTTTTGTTCCTTTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR TCA 72 bp ATAAAGGTTTTCAGACCCCAAATGAAACCACTGGTGTaGACTCTGCCATTAATCAAGGAGTCTGCAGCATAC +
Preference number: 3 (lower is better)
Translates to: IKVFRPQMKPLV*TLPLIKESAAY
Trigger: GTATGCTGCAGACTCCTTGATTAATGGCAGAGTTCACACCAGTGGTTTCATTTGGGGTCTGAAAACCTTTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR CAA 90 bp GCACACACTCATGACTCTCAGACACTCAACAAGTATTGGTCATATAAATCAGTGGGTCTCCTGGAAAACTaGTTATCTTCTAGGCTTTGG +
Preference number: 3 (lower is better)
Translates to: AHTHDSQTLNKYWSYKSVGLLEN*LSSRLW
Trigger: CCAAAGCCTAGAAGATAACAAGTTTTCCAGGAGACC...CACTGATTTATATGACCAATACTTGTTGAGTGTCTGAGAGTCATGAGTGTGTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR TCA 72 bp GGATTCAGAATACAGGACAAAATTAGACTGCAACACTaGACTCCTGAGTTCTCCAACAAACACAGAACCACA +
Preference number: 3 (lower is better)
Translates to: GFRIQDKIRLQH*TPEFSNKHRTT
Trigger: TGTGGTTCTGTGTTTGTTGGAGAACTCAGGAGTTCAGTGTTGCAGTCTAATTTTGTCCTGTATTCTGAATCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR CAA 90 bp GTAGACTTTATTCCTAACACAAATAACTTTACGCCACCACATCCTTTTAGAAGGTTGGCCCACTTCCTTTaGCCCATAATCCTTTTAGGC +
Preference number: 3 (lower is better)
Translates to: VDFIPNTNNFTPPHPFRRLAHFL*PIILLG
Trigger: GCCTAAAAGGATTATGGGCAAAAGGAAGTGGGCCAA...CCTTCTAAAAGGATGTGGTGGCGTAAAGTTATTTGTGTTAGGAATAAAGTCTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR CAA 90 bp GCACACACTCATGACTCTCAGACACTCAACAAGTATTGGTCATATAAATCAGTGCTCTTGTTCATATCTTaGGAGTCCATAATTATGGCC +
Preference number: 3 (lower is better)
Translates to: AHTHDSQTLNKYWSYKSVLLFIS*ESIIMA
Trigger: GGCCATAATTATGGACTCCAAAGATATGAACAAGAG...CACTGATTTATATGACCAATACTTGTTGAGTGTCTGAGAGTCATGAGTGTGTGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR CAA 90 bp GTAGACTTTATTCCTAACACAAATAACTTTACGCCACCACATCCTTTTAGAAGGATAATCCTTTTAGGCTaGCAGAGTCCCACACTAGTC +
Preference number: 3 (lower is better)
Translates to: VDFIPNTNNFTPPHPFRRIILLG*QSPTLV
Trigger: GACTAGTGTGGGACTCTGCAAGCCTAAAAGGATTAT...CCTTCTAAAAGGATGTGGTGGCGTAAAGTTATTTGTGTTAGGAATAAAGTCTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR TCA 72 bp CAATTTGCTTTGCGTTCCAGTGTGCAGGTATCTTTCTaGAGAGTGTTTGTATCTCTTCTGTACTGCACATTA +
Preference number: 3 (lower is better)
Translates to: QFALRSSVQVSF*RVFVSLLYCTL
Trigger: TAATGTGCAGTACAGAAGAGATACAAACACTCTTCAGAAAGATACCTGCACACTGGAACGCAAAGCAAATTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR TCA 72 bp AGAAGTATTCTCATCCCTAGACAATATGGTTTTGATTaGCAAGGGTTTGGCCCACTTCCTTTTGCCCATAAT +
Preference number: 3 (lower is better)
Translates to: RSILIPRQYGFD*QGFGPLPFAHN
Trigger: ATTATGGGCAAAAGGAAGTGGGCCAAACCCTTGTCAATCAAAACCATATTGTCTAGGGATGAGAATACTTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR GCA 72 bp TATAAAAGTCTCCACATGTCTTCAAGACGATTTAGTTaGTCACATGTTTTAACAGCTCTGAGAGGCCAAAGG +
Preference number: 3 (lower is better)
Translates to: YKSLHMSSRRFS*SHVLTALRGQR
Trigger: CCTTTGGCCTCTCAGAGCTGTTAAAACATGTGAGCAACTAAATCGTCTTGAAGACATGTGGAGACTTTTATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR CAA 90 bp GTAGACTTTATTCCTAACACAAATAACTTTACGCCACCACATCCTTTTAGAAGGACTGACTGGCAAATGTaGTCTCTTCTACTGCTCATA +
Preference number: 3 (lower is better)
Translates to: VDFIPNTNNFTPPHPFRRTDWQM*SLLLLI
Trigger: TATGAGCAGTAGAAGAGACAACATTTGCCAGTCAGT...CCTTCTAAAAGGATGTGGTGGCGTAAAGTTATTTGTGTTAGGAATAAAGTCTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR CAA 90 bp ACACATCAGTGGCCAAATGACGTTAATAAGATTGGCACACATAAGAACGTATGTTTTTTACATTTACTATaGGCCTTCCATACCCCTACC +
Preference number: 3 (lower is better)
Translates to: THQWPNDVNKIGTHKNVCFLHLL*AFHTPT
Trigger: GGTAGGGGTATGGAAGGCCAATAGTAAATGTAAAAA...ACATACGTTCTTATGTGTGCCAATCTTATTAACGTCATTTGGCCACTGATGTGT
39% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR CAA 90 bp GTAGACTTTATTCCTAACACAAATAACTTTACGCCACCACATCCTTTTAGAAGGCAACTCGGTCTACCTTaGCTCAGTAAGAGAAAAATG +
Preference number: 3 (lower is better)
Translates to: VDFIPNTNNFTPPHPFRRQLGLP*LSKRKM
Trigger: CATTTTTCTCTTACTGAGCAAAGGTAGACCGAGTTG...CCTTCTAAAAGGATGTGGTGGCGTAAAGTTATTTGTGTTAGGAATAAAGTCTAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR GCA 72 bp TTACAGTCCAGCATGTGCAATACTCAACTTCTCATATaGTGTAGATTGTGCCTCTTAATACTTTCTAAGGCA +
Preference number: 3 (lower is better)
Translates to: LQSSMCNTQLLI*CRLCLLILSKA
Trigger: TGCCTTAGAAAGTATTAAGAGGCACAATCTACAGCATATGAGAAGTTGAGTATTGCACATGCTGGACTGTAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR CAA 90 bp TTAACACTCCAATTACCATTCATTTATGTCCATTCCACAGTTCAGAGGGTTACTAGCCACAAAGAAACATaGCAGTACCAAAGAATCAGT +
Preference number: 3 (lower is better)
Translates to: LTLQLPFIYVHSTVQRVTSHKET*QYQRIS
Trigger: ACTGATTCTTTGGTACTGCAATGTTTCTTTGTGGCT...AGTAACCCTCTGAACTGTGGAATGGACATAAATGAATGGTAATTGGAGTGTTAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR-3UTR CAA 90 bp TTAACACTCCAATTACCATTCATTTATGTCCATTCCACAGTTCAGAGGGTTACTCTTTTCTTCACAGCATaGTTGAAATGTCCCTTAAGT +
Preference number: 3 (lower is better)
Translates to: LTLQLPFIYVHSTVQRVTLFFTA*LKCPLS
Trigger: ACTTAAGGGACATTTCAACAATGCTGTGAAGAAAAG...AGTAACCCTCTGAACTGTGGAATGGACATAAATGAATGGTAATTGGAGTGTTAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR TCA 72 bp ATAATACACAAAGAACTTGGACAGTGCCAGTATGACTaGAAATCAAGTACTCAACCCAAAAATCAATTTGCT +
Preference number: 3 (lower is better)
Translates to: IIHKELGQCQYD*KSSTQPKNQFA
Trigger: AGCAAATTGATTTTTGGGTTGAGTACTTGATTTTCAGTCATACTGGCACTGTCCAAGTTCTTTGTGTATTAT
35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR GCA 72 bp ATGTGCAATACTCAACTTCTCATATGCTGTAGATTGTaGCTCTTAATACTTTCTAAGGCAATAGTCATAGAT +
Preference number: 3 (lower is better)
Translates to: MCNTQLLICCRL*LLILSKAIVID
Trigger: ATCTATGACTATTGCCTTAGAAAGTATTAAGAGGCACAATCTACAGCATATGAGAAGTTGAGTATTGCACAT
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR GCA 72 bp GGTCAAATGTTACATACTAATGGATTTCTTGCTCATTaGCTCAACCTTCATAAAATACTTAAAGGAGCTCTT +
Preference number: 3 (lower is better)
Translates to: GQMLHTNGFLAH*LNLHKILKGAL
Trigger: AAGAGCTCCTTTAAGTATTTTATGAAGGTTGAGGCAATGAGCAAGAAATCCATTAGTATGTAACATTTGACC
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR CAA 72 bp TGTCATGTGGCAGGAGAACTCCTGGGTGGGGAGTCCTaGTGCACTACAGTCTACTTAGCAGCACCTGCAACC +
Preference number: 4 (lower is better)
Translates to: CHVAGELLGGES*CTTVYLAAPAT
Trigger: GGTTGCAGGTGCTGCTAAGTAGACTGTAGTGCACAAGGACTCCCCACCCAGGAGTTCTCCTGCCACATGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS-3UTR GCA 90 bp CCAGGCAGAAGGACAGGAGCATTCTCTCGTTTAATGTCTTTGCTGTTGGGAACGCTTGGCCAAGCAGCTTaGCCAGTCTCCAGTTGGTCG +
Preference number: 4 (lower is better)
Translates to: PGRRTGAFSRLMSLLLGTLGQAA*PVSSWS
Trigger: CGACCAACTGGAGACTGGGCAAGCTGCTTGGCCAAG...CGTTCCCAACAGCAAAGACATTAAACGAGAGAATGCTCCTGTCCTTCTGCCTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR CAA 72 bp ACCTGCAACCCCTGCCCACTGGATGCTAGTAGTACCTaGCCAGTTATGGCAACAAAGTGTCTCCAGGCATTG +
Preference number: 4 (lower is better)
Translates to: TCNPCPLDASST*PVMATKCLQAL
Trigger: CAATGCCTGGAGACACTTTGTTGCCATAACTGGCAAGGTACTACTAGCATCCAGTGGGCAGGGGTTGCAGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS-3UTR TCA 90 bp GGCCCACTTCCTTTTGCCCATAATCCTTTTAGGCTTGCAGAGTCCCACACTAGTGGCCGACTGGCCTTATaGAGGACAGCCAAATCTTGC +
Preference number: 4 (lower is better)
Translates to: GPLPFAHNPFRLAESHTSGRLAL*RTAKSC
Trigger: GCAAGATTTGGCTGTCCTTCATAAGGCCAGTCGGCC...ACTAGTGTGGGACTCTGCAAGCCTAAAAGGATTATGGGCAAAAGGAAGTGGGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS-3UTR TCA 90 bp GGATCCTGCCCAGCACAGTCTTTCCGTTTAATGACATGGCTCCAAAGAGATGCTTGCCCTAGGCATCCGTaGTTTTGGGTAGCTTTCTCC +
Preference number: 4 (lower is better)
Translates to: GSCPAQSFRLMTWLQRDACPRHP*FWVAFS
Trigger: GGAGAAAGCTACCCAAAATCACGGATGCCTAGGGCA...AGCATCTCTTTGGAGCCATGTCATTAAACGGAAAGACTGTGCTGGGCAGGATCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS-3UTR TCA 90 bp GGGAGGAGTGGAAGCAGCACTAACGATGACAGAAGCAAAGAGTGGCTCACAGCAGAAAGTGTTTTCTCCTaGGGATCCCTCAAACAGCCA +
Preference number: 4 (lower is better)
Translates to: GRSGSSTNDDRSKEWLTAESVFS*GSLKQP
Trigger: TGGCTGTTTGAGGGATCCTCAGGAGAAAACACTTTC...TGCTGTGAGCCACTCTTTGCTTCTGTCATCGTTAGTGCTGCTTCCACTCCTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS-3UTR TCA 90 bp GGCCCACTTCCTTTTGCCCATAATCCTTTTAGGCTTGCAGAGTCCCACACTAGTGAGAGACAGATGGTCTaGAGCCGTTTACTAGCCCCA +
Preference number: 4 (lower is better)
Translates to: GPLPFAHNPFRLAESHTSERQMV*SRLLAP
Trigger: TGGGGCTAGTAAACGGCTTCAGACCATCTGTCTCTC...ACTAGTGTGGGACTCTGCAAGCCTAAAAGGATTATGGGCAAAAGGAAGTGGGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS-3UTR TCA 90 bp GGATCCTGCCCAGCACAGTCTTTCCGTTTAATGACATGGCTCCAAAGAGATGCTAGTATGGCGTGCCTGTaGCAGACTTCATTCCTGTGC +
Preference number: 4 (lower is better)
Translates to: GSCPAQSFRLMTWLQRDASMACL*QTSFLC
Trigger: GCACAGGAATGAAGTCTGTCACAGGCACGCCATACT...AGCATCTCTTTGGAGCCATGTCATTAAACGGAAAGACTGTGCTGGGCAGGATCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS-3UTR CCA 90 bp TGGTGTCGGTTAGACAATGGGAGGAGTGGAAGCAGCACTAACGATGACAGAAGCGGTCCTTCTAGCTCTTaGAAAAGTCTTCCGACCGTC +
Preference number: 4 (lower is better)
Translates to: WCRLDNGRSGSSTNDDRSGPSSS*KSLPTV
Trigger: GACGGTCGGAAGACTTTTCCAAGAGCTAGAAGGACC...GCTTCTGTCATCGTTAGTGCTGCTTCCACTCCTCCCATTGTCTAACCGACACCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS-3UTR TCA 90 bp CCAGGCAGAAGGACAGGAGCATTCTCTCGTTTAATGTCTTTGCTGTTGGGAACGCTTCATTCCTGTGCCTaGGAGACAGATGGTCTGAAG +
Preference number: 4 (lower is better)
Translates to: PGRRTGAFSRLMSLLLGTLHSCA*ETDGLK
Trigger: CTTCAGACCATCTGTCTCTCAGGCACAGGAATGAAG...CGTTCCCAACAGCAAAGACATTAAACGAGAGAATGCTCCTGTCCTTCTGCCTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS-3UTR CCA 90 bp CCAGGCAGAAGGACAGGAGCATTCTCTCGTTTAATGTCTTTGCTGTTGGGAACGTTCCTTGCTGGTCTCTaGGCTCTCAGGGTTAAACTG +
Preference number: 4 (lower is better)
Translates to: PGRRTGAFSRLMSLLLGTFLAGL*ALRVKL
Trigger: CAGTTTAACCCTGAGAGCCCAGAGACCAGCAAGGAA...CGTTCCCAACAGCAAAGACATTAAACGAGAGAATGCTCCTGTCCTTCTGCCTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS-3UTR TCA 90 bp GGATCCTGCCCAGCACAGTCTTTCCGTTTAATGACATGGCTCCAAAGAGATGCTCTAGTGCTTAAGGAGTaGTCAGTAGGACTGAAGCTC +
Preference number: 4 (lower is better)
Translates to: GSCPAQSFRLMTWLQRDALVLKE*SVGLKL
Trigger: GAGCTTCAGTCCTACTGATCACTCCTTAAGCACTAG...AGCATCTCTTTGGAGCCATGTCATTAAACGGAAAGACTGTGCTGGGCAGGATCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS-3UTR TCA 90 bp CCAGGCAGAAGGACAGGAGCATTCTCTCGTTTAATGTCTTTGCTGTTGGGAACGCTCTCAGGGTTAAACTaGACTTGCTTAACAGCCAGC +
Preference number: 4 (lower is better)
Translates to: PGRRTGAFSRLMSLLLGTLSGLN*TCLTAS
Trigger: GCTGGCTGTTAAGCAAGTTCAGTTTAACCCTGAGAG...CGTTCCCAACAGCAAAGACATTAAACGAGAGAATGCTCCTGTCCTTCTGCCTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS-3UTR GCA 90 bp TGGTGTCGGTTAGACAATGGGAGGAGTGGAAGCAGCACTAACGATGACAGAAGCTGTAGATCCATAGACTaGCCAAAGGCGATCTTAGAC +
Preference number: 4 (lower is better)
Translates to: WCRLDNGRSGSSTNDDRSCRSID*PKAILD
Trigger: GTCTAAGATCGCCTTTGGGCAGTCTATGGATCTACA...GCTTCTGTCATCGTTAGTGCTGCTTCCACTCCTCCCATTGTCTAACCGACACCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS-3UTR CCA 90 bp TGGTGTCGGTTAGACAATGGGAGGAGTGGAAGCAGCACTAACGATGACAGAAGCTTGGTCCATGCTCTCTaGAATGAACTCTCCTTCACT +
Preference number: 4 (lower is better)
Translates to: WCRLDNGRSGSSTNDDRSLVHAL*NELSFT
Trigger: AGTGAAGGAGAGTTCATTCCAGAGAGCATGGACCAA...GCTTCTGTCATCGTTAGTGCTGCTTCCACTCCTCCCATTGTCTAACCGACACCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR CAA 72 bp GATTTGCTAAGGGTGGAGGCCCCTGATCTGTGGTCATaGCAAGGGGCTTCGTTTGATTTACAGTGTACAAGA +
Preference number: 4 (lower is better)
Translates to: DLLRVEAPDLWS*QGASFDLQCTR
Trigger: TCTTGTACACTGTAAATCAAACGAAGCCCCTTGCAATGACCACAGATCAGGGGCCTCCACCCTTAGCAAATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR CAA 72 bp TTGGCCCACTTCCTTTTGCCCATAATCCTTTTAGGCTaGCAGAGTCCCACACTAGTCTACTCTCCTTACTGC +
Preference number: 4 (lower is better)
Translates to: LAHFLLPIILLG*QSPTLVYSPYC
Trigger: GCAGTAAGGAGAGTAGACTAGTGTGGGACTCTGCAAGCCTAAAAGGATTATGGGCAAAAGGAAGTGGGCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS-3UTR TCA 90 bp GCATTTAAGTTCCAGGCCAGCCTGAAACACATAGTGAGAACCCTGACTCCAAAAGTTGATGCTAGTGAATaGCCCATTCCGGGCAATCTG +
Preference number: 4 (lower is better)
Translates to: AFKFQASLKHIVRTLTPKVDASE*PIPGNL
Trigger: CAGATTGCCCGGAATGGGTCATTCACTAGCATCAAC...TTTTGGAGTCAGGGTTCTCACTATGTGTTTCAGGCTGGCCTGGAACTTAAATGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS-3UTR CCA 90 bp TTTGCAAAAGCAAGAAGGTCATCCTACGAAGGTCACAGCAGCACAGAAACTGAGATAATGCTGGCCGACTaGCCTTATGAAGGACAGCCA +
Preference number: 4 (lower is better)
Translates to: FAKARRSSYEGHSSTETEIMLAD*PYEGQP
Trigger: TGGCTGTCCTTCATAAGGCCAGTCGGCCAGCATTAT...CTCAGTTTCTGTGCTGCTGTGACCTTCGTAGGATGACCTTCTTGCTTTTGCAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS-3UTR GCA 90 bp GGCCCACTTCCTTTTGCCCATAATCCTTTTAGGCTTGCAGAGTCCCACACTAGTCCGCTTTTTCCTCTCTaGACCAAGTGGTGTATTATT +
Preference number: 4 (lower is better)
Translates to: GPLPFAHNPFRLAESHTSPLFPL*TKWCII
Trigger: AATAATACACCACTTGGTGCAGAGAGGAAAAAGCGG...ACTAGTGTGGGACTCTGCAAGCCTAAAAGGATTATGGGCAAAAGGAAGTGGGCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS-3UTR GCA 90 bp CCAGGCAGAAGGACAGGAGCATTCTCTCGTTTAATGTCTTTGCTGTTGGGAACGTACACTCCAGATGTCTaGTTTTCTTCCATAGCCTTC +
Preference number: 4 (lower is better)
Translates to: PGRRTGAFSRLMSLLLGTYTPDV*FSSIAF
Trigger: GAAGGCTATGGAAGAAAAGCAGACATCTGGAGTGTA...CGTTCCCAACAGCAAAGACATTAAACGAGAGAATGCTCCTGTCCTTCTGCCTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS-3UTR CCA 90 bp ACTGGAAATACCTGGCAGTGTTTTAACCTCCCCACTGCTAGTAAACACTATGTTCCATTCCGGGCAATCTaGTGTAGCTCGTCTGGAATG +
Preference number: 4 (lower is better)
Translates to: TGNTWQCFNLPTASKHYVPFRAI*CSSSGM
Trigger: CATTCCAGACGAGCTACACCAGATTGCCCGGAATGG...AACATAGTGTTTACTAGCAGTGGGGAGGTTAAAACACTGCCAGGTATTTCCAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS-3UTR CCA 90 bp GGATCCTGCCCAGCACAGTCTTTCCGTTTAATGACATGGCTCCAAAGAGATGCTAACGTGGTACCTTCTTaGATATGTTCCTCCTTTTCC +
Preference number: 4 (lower is better)
Translates to: GSCPAQSFRLMTWLQRDANVVPS*ICSSFS
Trigger: GGAAAAGGAGGAACATATCCAAGAAGGTACCACGTT...AGCATCTCTTTGGAGCCATGTCATTAAACGGAAAGACTGTGCTGGGCAGGATCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS-3UTR CCA 90 bp AAAACAATCTGGGACTGTGTTGTATCGGAAGAGCAGGTTCTGACGTGGGATATAAGGACTCATCCAGTATaGCGTGCCTGTGACAGACTT +
Preference number: 4 (lower is better)
Translates to: KTIWDCVVSEEQVLTWDIRTHPV*RACDRL
Trigger: AAGTCTGTCACAGGCACGCCATACTGGATGAGTCCT...TATATCCCACGTCAGAACCTGCTCTTCCGATACAACACAGTCCCAGATTGTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS-3UTR TCA 90 bp GTAGACTTTATTCCTAACACAAATAACTTTACGCCACCACATCCTTTTAGAAGGACCCCCTCCAGAATCTaGCGGGTGTACTTCCTCGTC +
Preference number: 4 (lower is better)
Translates to: VDFIPNTNNFTPPHPFRRTPSRI*RVYFLV
Trigger: GACGAGGAAGTACACCCGTCAGATTCTGGAGGGGGT...CCTTCTAAAAGGATGTGGTGGCGTAAAGTTATTTGTGTTAGGAATAAAGTCTAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS-3UTR CCA 90 bp AAAACAATCTGGGACTGTGTTGTATCGGAAGAGCAGGTTCTGACGTGGGATATAGTCTGGAATGTATCCTaGAGGAGGGGAACTTCTATC +
Preference number: 4 (lower is better)
Translates to: KTIWDCVVSEEQVLTWDIVWNVS*RRGTSI
Trigger: GATAGAAGTTCCCCTCCTCCAGGATACATTCCAGAC...TATATCCCACGTCAGAACCTGCTCTTCCGATACAACACAGTCCCAGATTGTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS-3UTR CCA 90 bp TTTGCAAAAGCAAGAAGGTCATCCTACGAAGGTCACAGCAGCACAGAAACTGAGAATGGATCCAGCATTTaGTCCATGCTCTCTGGAATG +
Preference number: 4 (lower is better)
Translates to: FAKARRSSYEGHSSTETENGSSI*SMLSGM
Trigger: CATTCCAGAGAGCATGGACCAAATGCTGGATCCATT...CTCAGTTTCTGTGCTGCTGTGACCTTCGTAGGATGACCTTCTTGCTTTTGCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS-3UTR CCA 90 bp GTAGACTTTATTCCTAACACAAATAACTTTACGCCACCACATCCTTTTAGAAGGTGCCCAGTCTCCAGTTaGTCGGAGCTCGAGGTGAAC +
Preference number: 4 (lower is better)
Translates to: VDFIPNTNNFTPPHPFRRCPVSS*SELEVN
Trigger: GTTCACCTCGAGCTCCGACCAACTGGAGACTGGGCA...CCTTCTAAAAGGATGTGGTGGCGTAAAGTTATTTGTGTTAGGAATAAAGTCTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS-3UTR CCA 90 bp AAAACAATCTGGGACTGTGTTGTATCGGAAGAGCAGGTTCTGACGTGGGATATACAGCTTTGGGTTCGTTaGCTGAGTGGCGATCTTAAA +
Preference number: 4 (lower is better)
Translates to: KTIWDCVVSEEQVLTWDIQLWVR*LSGDLK
Trigger: TTTAAGATCGCCACTCAGCCAACGAACCCAAAGCTG...TATATCCCACGTCAGAACCTGCTCTTCCGATACAACACAGTCCCAGATTGTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR CAA 72 bp ATGGTTTTGATTGACAAGGGTTTGGCCCACTTCCTTTaGCCCATAATCCTTTTAGGCTTGCAGAGTCCCACA +
Preference number: 4 (lower is better)
Translates to: MVLIDKGLAHFL*PIILLGLQSPT
Trigger: TGTGGGACTCTGCAAGCCTAAAAGGATTATGGGCAAAAGGAAGTGGGCCAAACCCTTGTCAATCAAAACCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS-3UTR CCA 90 bp GCACACACTCATGACTCTCAGACACTCAACAAGTATTGGTCATATAAATCAGTGCTCCTGATGATTATCTaGGTAGCTCTGTGCCCTAGG +
Preference number: 4 (lower is better)
Translates to: AHTHDSQTLNKYWSYKSVLLMII*VALCPR
Trigger: CCTAGGGCACAGAGCTACCCAGATAATCATCAGGAG...CACTGATTTATATGACCAATACTTGTTGAGTGTCTGAGAGTCATGAGTGTGTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS-3UTR CCA 90 bp TTAACACTCCAATTACCATTCATTTATGTCCATTCCACAGTTCAGAGGGTTACTCGGAAACTGGTGCCCTaGGTCCTTCTAGCTCTTGGA +
Preference number: 4 (lower is better)
Translates to: LTLQLPFIYVHSTVQRVTRKLVP*VLLALG
Trigger: TCCAAGAGCTAGAAGGACCCAGGGCACCAGTTTCCG...AGTAACCCTCTGAACTGTGGAATGGACATAAATGAATGGTAATTGGAGTGTTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS-3UTR CCA 90 bp ACTGGAAATACCTGGCAGTGTTTTAACCTCCCCACTGCTAGTAAACACTATGTTACTGTCGTCATACTCTaGGGTAAAGACACTGCTTCC +
Preference number: 4 (lower is better)
Translates to: TGNTWQCFNLPTASKHYVTVVIL*GKDTAS
Trigger: GGAAGCAGTGTCTTTACCCCAGAGTATGACGACAGT...AACATAGTGTTTACTAGCAGTGGGGAGGTTAAAACACTGCCAGGTATTTCCAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS-3UTR TCA 90 bp TTAACACTCCAATTACCATTCATTTATGTCCATTCCACAGTTCAGAGGGTTACTGTCCCGAGTATAGTCTaGGACATGAGGTGGCAGCTT +
Preference number: 4 (lower is better)
Translates to: LTLQLPFIYVHSTVQRVTVPSIV*DMRWQL
Trigger: AAGCTGCCACCTCATGTCTCAGACTATACTCGGGAC...AGTAACCCTCTGAACTGTGGAATGGACATAAATGAATGGTAATTGGAGTGTTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS-3UTR GCA 90 bp ACACATCAGTGGCCAAATGACGTTAATAAGATTGGCACACATAAGAACGTATGTGTGCATTTACTTCCTTaGTGGTCTCTGGGCTCTCAG +
Preference number: 4 (lower is better)
Translates to: THQWPNDVNKIGTHKNVCVHLLP*WSLGSQ
Trigger: CTGAGAGCCCAGAGACCAGCAAGGAAGTAAATGCAC...ACATACGTTCTTATGTGTGCCAATCTTATTAACGTCATTTGGCCACTGATGTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS-3UTR CCA 90 bp AGATACTTGTACTCTAATCCTCTTGTTCATATCTTTGGAGTCCATAATTATGGCATGAGGTGGCAGCTTTaGGTTCGTTGGCTGAGTGGC +
Preference number: 4 (lower is better)
Translates to: RYLYSNPLVHIFGVHNYGMRWQL*VRWLSG
Trigger: GCCACTCAGCCAACGAACCCAAAGCTGCCACCTCAT...GCCATAATTATGGACTCCAAAGATATGAACAAGAGGATTAGAGTACAAGTATCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS-3UTR TCA 90 bp AAAACAATCTGGGACTGTGTTGTATCGGAAGAGCAGGTTCTGACGTGGGATATACAGCCAAATCTTGCATaGTTGAATTCAAAGCTTGCT +
Preference number: 4 (lower is better)
Translates to: KTIWDCVVSEEQVLTWDIQPNLA*LNSKLA
Trigger: AGCAAGCTTTGAATTCAATCATGCAAGATTTGGCTG...TATATCCCACGTCAGAACCTGCTCTTCCGATACAACACAGTCCCAGATTGTTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS-3UTR GCA 90 bp GCATTTAAGTTCCAGGCCAGCCTGAAACACATAGTGAGAACCCTGACTCCAAAAAATTTCACACTCAAGTaGATTTACTTCCTTGCTGGT +
Preference number: 4 (lower is better)
Translates to: AFKFQASLKHIVRTLTPKNFTLK*IYFLAG
Trigger: ACCAGCAAGGAAGTAAATGCACTTGAGTGTGAAATT...TTTTGGAGTCAGGGTTCTCACTATGTGTTTCAGGCTGGCCTGGAACTTAAATGC
42% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS-3UTR GCA 90 bp GCACACACTCATGACTCTCAGACACTCAACAAGTATTGGTCATATAAATCAGTGAAAGATGGCAGCCATTaGTTCAAATTCAGCCCAAGG +
Preference number: 4 (lower is better)
Translates to: AHTHDSQTLNKYWSYKSVKDGSH*FKFSPR
Trigger: CCTTGGGCTGAATTTGAAGCAATGGCTGCCATCTTT...CACTGATTTATATGACCAATACTTGTTGAGTGTCTGAGAGTCATGAGTGTGTGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR CAA 72 bp ATCGGAAGAGCAGGTTCTGACGTGGGATATAGATACTaGTACTCTAATCCTCTTGTTCATATCTTTGGAGTC +
Preference number: 4 (lower is better)
Translates to: IGRAGSDVGYRY*YSNPLVHIFGV
Trigger: GACTCCAAAGATATGAACAAGAGGATTAGAGTACAAGTATCTATATCCCACGTCAGAACCTGCTCTTCCGAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS-3UTR CCA 90 bp GCACACACTCATGACTCTCAGACACTCAACAAGTATTGGTCATATAAATCAGTGCTGAAGGTCGAAGTTTaGCCTCTACAAAAATCCGTT +
Preference number: 4 (lower is better)
Translates to: AHTHDSQTLNKYWSYKSVLKVEV*PLQKSV
Trigger: AACGGATTTTTGTAGAGGCCAAACTTCGACCTTCAG...CACTGATTTATATGACCAATACTTGTTGAGTGTCTGAGAGTCATGAGTGTGTGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS-3UTR TCA 90 bp TTAACACTCCAATTACCATTCATTTATGTCCATTCCACAGTTCAGAGGGTTACTTTGAGACTCTTCATGTaGATACTGCGATCCAGCAGT +
Preference number: 4 (lower is better)
Translates to: LTLQLPFIYVHSTVQRVTLRLFM*ILRSSS
Trigger: ACTGCTGGATCGCAGTATTCACATGAAGAGTCTCAA...AGTAACCCTCTGAACTGTGGAATGGACATAAATGAATGGTAATTGGAGTGTTAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS-3UTR GCA 90 bp ACTGGAAATACCTGGCAGTGTTTTAACCTCCCCACTGCTAGTAAACACTATGTTAGGACAGCCAAATCTTaGATGATTGAATTCAAAGCT +
Preference number: 4 (lower is better)
Translates to: TGNTWQCFNLPTASKHYVRTAKS*MIEFKA
Trigger: AGCTTTGAATTCAATCATGCAAGATTTGGCTGTCCT...AACATAGTGTTTACTAGCAGTGGGGAGGTTAAAACACTGCCAGGTATTTCCAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS-3UTR GCA 90 bp GTAGACTTTATTCCTAACACAAATAACTTTACGCCACCACATCCTTTTAGAAGGTTCTACCACAGTACATaGTACACTCCAGATGTCTGC +
Preference number: 4 (lower is better)
Translates to: VDFIPNTNNFTPPHPFRRFYHST*YTPDVC
Trigger: GCAGACATCTGGAGTGTAGCATGTACTGTGGTAGAA...CCTTCTAAAAGGATGTGGTGGCGTAAAGTTATTTGTGTTAGGAATAAAGTCTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR CAA 72 bp TCTACACACATCAGTGGCCAAATGACGTTAATAAGATaGGCACACATAAGAACGTATGTCTGCAGTGTCTAT +
Preference number: 4 (lower is better)
Translates to: STHISGQMTLIR*AHIRTYVCSVY
Trigger: ATAGACACTGCAGACATACGTTCTTATGTGTGCCAATCTTATTAACGTCATTTGGCCACTGATGTGTGTAGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR CAA 72 bp CATCCTTTTAGAAGGTTTCCATTGAGTACAGTAACATaGTCAGACAGAAACCTAGTTTCCTACACTTCCTGC +
Preference number: 4 (lower is better)
Translates to: HPFRRFPLSTVT*SDRNLVSYTSC
Trigger: GCAGGAAGTGTAGGAAACTAGGTTTCTGTCTGACAATGTTACTGTACTCAATGGAAACCTTCTAAAAGGATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS-3UTR TCA 90 bp TTAACACTCCAATTACCATTCATTTATGTCCATTCCACAGTTCAGAGGGTTACTCTACAAAAATCCGTTTaGGGAAGTCCCGAGTATAGT +
Preference number: 4 (lower is better)
Translates to: LTLQLPFIYVHSTVQRVTLQKSV*GSPEYS
Trigger: ACTATACTCGGGACTTCCTCAAACGGATTTTTGTAG...AGTAACCCTCTGAACTGTGGAATGGACATAAATGAATGGTAATTGGAGTGTTAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR CAA 72 bp AACTTTACGCCACCACATCCTTTTAGAAGGTTTCCATaGAGTACAGTAACATTGTCAGACAGAAACCTAGTT +
Preference number: 4 (lower is better)
Translates to: NFTPPHPFRRFP*STVTLSDRNLV
Trigger: AACTAGGTTTCTGTCTGACAATGTTACTGTACTCAATGGAAACCTTCTAAAAGGATGTGGTGGCGTAAAGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS-3UTR CCA 90 bp GTAGACTTTATTCCTAACACAAATAACTTTACGCCACCACATCCTTTTAGAAGGTTGTCCAAGTCATCTTaGGTAGTTAACGGAATTACC +
Preference number: 4 (lower is better)
Translates to: VDFIPNTNNFTPPHPFRRLSKSS*VVNGIT
Trigger: GGTAATTCCGTTAACTACCCAAGATGACTTGGACAA...CCTTCTAAAAGGATGTGGTGGCGTAAAGTTATTTGTGTTAGGAATAAAGTCTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
3UTR CAA 72 bp CTGACGTGGGATATAGATACTTGTACTCTAATCCTCTaGTTCATATCTTTGGAGTCCATAATTATGGCCAAA +
Preference number: 4 (lower is better)
Translates to: LTWDIDTCTLIL*FISLESIIMAK
Trigger: TTTGGCCATAATTATGGACTCCAAAGATATGAACAAGAGGATTAGAGTACAAGTATCTATATCCCACGTCAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS-3UTR GCA 90 bp AGATACTTGTACTCTAATCCTCTTGTTCATATCTTTGGAGTCCATAATTATGGCCAGAATTTTCAGGGCTaGTTAAAGACAATGGATCCA +
Preference number: 4 (lower is better)
Translates to: RYLYSNPLVHIFGVHNYGQNFQG*LKTMDP
Trigger: TGGATCCATTGTCTTTAAGCAGCCCTGAAAATTCTG...GCCATAATTATGGACTCCAAAGATATGAACAAGAGGATTAGAGTACAAGTATCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS-3UTR CAA 90 bp TGGTGTCGGTTAGACAATGGGAGGAGTGGAAGCAGCACTAACGATGACAGAAGCTTGCCCAGTCTCCAGTaGGTCGGAGCTCGAGGTGAA +
Preference number: 5 (lower is better)
Translates to: WCRLDNGRSGSSTNDDRSLPSLQ*VGARGE
Trigger: TTCACCTCGAGCTCCGACCAACTGGAGACTGGGCAA...GCTTCTGTCATCGTTAGTGCTGCTTCCACTCCTCCCATTGTCTAACCGACACCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS CCA 90 bp GCTCACAGGAGACCGGAAACTGGTGCCCTGGGTCCTTCTAGCTCTTaGAAAAGTCTTCCGACCGTCATTATACTCCTGGTGATGATAGGA +
Preference number: 5 (lower is better)
Translates to: AHRRPETGALGPSSS*KSLPTVIILLVMIG
Trigger: TCCTATCATCACCAGGAGTATAATGACGGTCGGAAGACTTTTCCAAGAGCTAGAAGGACCCAGGGCACCAGTTTCCGGTCTCCTGTGAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS-3UTR CAA 90 bp TTTGCAAAAGCAAGAAGGTCATCCTACGAAGGTCACAGCAGCACAGAAACTGAGCCTTGGCCAAGCAGCTaGCCCAGTCTCCAGTTGGTC +
Preference number: 5 (lower is better)
Translates to: FAKARRSSYEGHSSTETEPWPSS*PSLQLV
Trigger: GACCAACTGGAGACTGGGCAAGCTGCTTGGCCAAGG...CTCAGTTTCTGTGCTGCTGTGACCTTCGTAGGATGACCTTCTTGCTTTTGCAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS TCA 90 bp TACTCTGGGGTAAAGACACTGCTTCCACTACTAGTGCTTAAGGAGTaGTCAGTAGGACTGAAGCTCACAGGAGACCGGAAACTGGTGCCC +
Preference number: 5 (lower is better)
Translates to: YSGVKTLLPLLVLKE*SVGLKLTGDRKLVP
Trigger: GGGCACCAGTTTCCGGTCTCCTGTGAGCTTCAGTCCTACTGATCACTCCTTAAGCACTAGTAGTGGAAGCAGTGTCTTTACCCCAGAGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS TCA 90 bp GCTCCTCCGCTGAAGGTCGAAGTTTGGCCTCTACAAAAATCCGTTTaGGGAAGTCCCGAGTATAGTCTGAGACATGAGGTGGCAGCTTTG +
Preference number: 5 (lower is better)
Translates to: APPLKVEVWPLQKSV*GSPEYSLRHEVAAL
Trigger: CAAAGCTGCCACCTCATGTCTCAGACTATACTCGGGACTTCCTCAAACGGATTTTTGTAGAGGCCAAACTTCGACCTTCAGCGGAGGAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS-3UTR CAA 90 bp GGCCCACTTCCTTTTGCCCATAATCCTTTTAGGCTTGCAGAGTCCCACACTAGTAGTGCATTTACTTCCTaGCTGGTCTCTGGGCTCTCA +
Preference number: 5 (lower is better)
Translates to: GPLPFAHNPFRLAESHTSSAFTS*LVSGLS
Trigger: TGAGAGCCCAGAGACCAGCAAGGAAGTAAATGCACT...ACTAGTGTGGGACTCTGCAAGCCTAAAAGGATTATGGGCAAAAGGAAGTGGGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS-3UTR CAA 90 bp CCAGGCAGAAGGACAGGAGCATTCTCTCGTTTAATGTCTTTGCTGTTGGGAACGAGCAGTTCCACAGCTTaGTCCAAGTCATCTTGGGTA +
Preference number: 5 (lower is better)
Translates to: PGRRTGAFSRLMSLLLGTSSSTA*SKSSWV
Trigger: TACCCAAGATGACTTGGACAAAGCTGTGGAACTGCT...CGTTCCCAACAGCAAAGACATTAAACGAGAGAATGCTCCTGTCCTTCTGCCTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS-3UTR CAA 90 bp GGCCCACTTCCTTTTGCCCATAATCCTTTTAGGCTTGCAGAGTCCCACACTAGTGCTGAAGGTCGAAGTTaGGCCTCTACAAAAATCCGT +
Preference number: 5 (lower is better)
Translates to: GPLPFAHNPFRLAESHTSAEGRS*ASTKIR
Trigger: ACGGATTTTTGTAGAGGCCAAACTTCGACCTTCAGC...ACTAGTGTGGGACTCTGCAAGCCTAAAAGGATTATGGGCAAAAGGAAGTGGGCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS GCA 90 bp GACTATCAAGTGACGGACAGCTTCCTGAGCCAGAATTTTCAGGGCTaGTTAAAGACAATGGATCCAGCATTTGGTCCATGCTCTCTGGAA +
Preference number: 5 (lower is better)
Translates to: DYQVTDSFLSQNFQG*LKTMDPAFGPCSLE
Trigger: TTCCAGAGAGCATGGACCAAATGCTGGATCCATTGTCTTTAAGCAGCCCTGAAAATTCTGGCTCAGGAAGCTGTCCGTCACTTGATAGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS-3UTR CAA 90 bp GCACACACTCATGACTCTCAGACACTCAACAAGTATTGGTCATATAAATCAGTGCCTACCAAAAGCTCCTaGGCCAAGCAGCTTGCCCAG +
Preference number: 5 (lower is better)
Translates to: AHTHDSQTLNKYWSYKSVPTKSS*AKQLAQ
Trigger: CTGGGCAAGCTGCTTGGCCAAGGAGCTTTTGGTAGG...CACTGATTTATATGACCAATACTTGTTGAGTGTCTGAGAGTCATGAGTGTGTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS-3UTR CAA 90 bp AAAACAATCTGGGACTGTGTTGTATCGGAAGAGCAGGTTCTGACGTGGGATATACAATGGATCCAGCATTaGGTCCATGCTCTCTGGAAT +
Preference number: 5 (lower is better)
Translates to: KTIWDCVVSEEQVLTWDIQWIQH*VHALWN
Trigger: ATTCCAGAGAGCATGGACCAAATGCTGGATCCATTG...TATATCCCACGTCAGAACCTGCTCTTCCGATACAACACAGTCCCAGATTGTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS-3UTR CAA 90 bp AAAACAATCTGGGACTGTGTTGTATCGGAAGAGCAGGTTCTGACGTGGGATATAACAGTCAAAGTAGGATaGTCTATGTCACTCCCCCGT +
Preference number: 5 (lower is better)
Translates to: KTIWDCVVSEEQVLTWDITVKVG*SMSLPR
Trigger: ACGGGGGAGTGACATAGACAATCCTACTTTGACTGT...TATATCCCACGTCAGAACCTGCTCTTCCGATACAACACAGTCCCAGATTGTTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS-3UTR CAA 90 bp TTAACACTCCAATTACCATTCATTTATGTCCATTCCACAGTTCAGAGGGTTACTCATGAGGTGGCAGCTTaGGGTTCGTTGGCTGAGTGG +
Preference number: 5 (lower is better)
Translates to: LTLQLPFIYVHSTVQRVTHEVAA*GSLAEW
Trigger: CCACTCAGCCAACGAACCCAAAGCTGCCACCTCATG...AGTAACCCTCTGAACTGTGGAATGGACATAAATGAATGGTAATTGGAGTGTTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS GCA 90 bp TCGCTCATGCAACAAGTTTTTCAACAACTGAATTTCACACTCAAGTaGATTTACTTCCTTGCTGGTCTCTGGGCTCTCAGGGTTAAACTG +
Preference number: 5 (lower is better)
Translates to: SLMQQVFQQLNFTLK*IYFLAGLWALRVKL
Trigger: CAGTTTAACCCTGAGAGCCCAGAGACCAGCAAGGAAGTAAATGCACTTGAGTGTGAAATTCAGTTGTTGAAAAACTTGTTGCATGAGCGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS-3UTR CAA 90 bp ACTGGAAATACCTGGCAGTGTTTTAACCTCCCCACTGCTAGTAAACACTATGTTAACTCTCCTTCACTGTaGATGCTAGTGAATGACCCA +
Preference number: 5 (lower is better)
Translates to: TGNTWQCFNLPTASKHYVNSPSL*MLVNDP
Trigger: TGGGTCATTCACTAGCATCAACAGTGAAGGAGAGTT...AACATAGTGTTTACTAGCAGTGGGGAGGTTAAAACACTGCCAGGTATTTCCAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS TCA 90 bp TGTGTACTCCCATTTACTACAAGTAATATCTTGAGACTCTTCATGTaGATACTGCGATCCAGCAGTTCCACAGCTTTGTCCAAGTCATCT +
Preference number: 5 (lower is better)
Translates to: CVLPFTTSNILRLFM*ILRSSSSTALSKSS
Trigger: AGATGACTTGGACAAAGCTGTGGAACTGCTGGATCGCAGTATTCACATGAAGAGTCTCAAGATATTACTTGTAGTAAATGGGAGTACACA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS-3UTR CAA 90 bp GCACACACTCATGACTCTCAGACACTCAACAAGTATTGGTCATATAAATCAGTGAAACGTGGTACCTTCTaGGATATGTTCCTCCTTTTC +
Preference number: 5 (lower is better)
Translates to: AHTHDSQTLNKYWSYKSVKRGTF*DMFLLF
Trigger: GAAAAGGAGGAACATATCCAAGAAGGTACCACGTTT...CACTGATTTATATGACCAATACTTGTTGAGTGTCTGAGAGTCATGAGTGTGTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS-3UTR CAA 90 bp GTAGACTTTATTCCTAACACAAATAACTTTACGCCACCACATCCTTTTAGAAGGCCAAAGTCTCCTAACTaGATATTGCCTGTGGAATCC +
Preference number: 5 (lower is better)
Translates to: VDFIPNTNNFTPPHPFRRPKSPN*ILPVES
Trigger: GGATTCCACAGGCAATATCAAGTTAGGAGACTTTGG...CCTTCTAAAAGGATGTGGTGGCGTAAAGTTATTTGTGTTAGGAATAAAGTCTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS CAA 72 bp AAAGCTCCTTGGCCAAGCAGCTTGCCCAGTCTCCAGTaGGTCGGAGCTCGAGGTGAACGGCTGGGTGGGCTG +
Preference number: 6 (lower is better)
Translates to: KAPWPSSLPSLQ*VGARGERLGGL
Trigger: CAGCCCACCCAGCCGTTCACCTCGAGCTCCGACCAACTGGAGACTGGGCAAGCTGCTTGGCCAAGGAGCTTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS CAA 90 bp ACCCTACCAAAAGCTCCTTGGCCAAGCAGCTTGCCCAGTCTCCAGTaGGTCGGAGCTCGAGGTGAACGGCTGGGTGGGCTGATGTCTGTG +
Preference number: 6 (lower is better)
Translates to: TLPKAPWPSSLPSLQ*VGARGERLGGLMSV
Trigger: CACAGACATCAGCCCACCCAGCCGTTCACCTCGAGCTCCGACCAACTGGAGACTGGGCAAGCTGCTTGGCCAAGGAGCTTTTGGTAGGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS TCA 72 bp GTATGGCGTGCCTGTGACAGACTTCATTCCTGTGCCTaGGAGACAGATGGTCTGAAGCCGTTTACTAGCCCC +
Preference number: 6 (lower is better)
Translates to: VWRACDRLHSCA*ETDGLKPFTSP
Trigger: GGGGCTAGTAAACGGCTTCAGACCATCTGTCTCTCAGGCACAGGAATGAAGTCTGTCACAGGCACGCCATAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS CCA 72 bp AGACCGGAAACTGGTGCCCTGGGTCCTTCTAGCTCTTaGAAAAGTCTTCCGACCGTCATTATACTCCTGGTG +
Preference number: 6 (lower is better)
Translates to: RPETGALGPSSS*KSLPTVIILLV
Trigger: CACCAGGAGTATAATGACGGTCGGAAGACTTTTCCAAGAGCTAGAAGGACCCAGGGCACCAGTTTCCGGTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS CAA 90 bp TCCAGCATTTGGTCCATGCTCTCTGGAATGAACTCTCCTTCACTGTaGATGCTAGTGAATGACCCATTCCGGGCAATCTGGTGTAGCTCG +
Preference number: 6 (lower is better)
Translates to: SSIWSMLSGMNSPSL*MLVNDPFRAIWCSS
Trigger: CGAGCTACACCAGATTGCCCGGAATGGGTCATTCACTAGCATCAACAGTGAAGGAGAGTTCATTCCAGAGAGCATGGACCAAATGCTGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS TCA 72 bp ACTTCCTTGCTGGTCTCTGGGCTCTCAGGGTTAAACTaGACTTGCTTAACAGCCAGCTCTCTTCCGGTATCA +
Preference number: 6 (lower is better)
Translates to: TSLLVSGLSGLN*TCLTASSLPVS
Trigger: TGATACCGGAAGAGAGCTGGCTGTTAAGCAAGTTCAGTTTAACCCTGAGAGCCCAGAGACCAGCAAGGAAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS GCA 72 bp GTGACGGACAGCTTCCTGAGCCAGAATTTTCAGGGCTaGTTAAAGACAATGGATCCAGCATTTGGTCCATGC +
Preference number: 6 (lower is better)
Translates to: VTDSFLSQNFQG*LKTMDPAFGPC
Trigger: GCATGGACCAAATGCTGGATCCATTGTCTTTAAGCAGCCCTGAAAATTCTGGCTCAGGAAGCTGTCCGTCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS CAA 72 bp TGGTCCATGCTCTCTGGAATGAACTCTCCTTCACTGTaGATGCTAGTGAATGACCCATTCCGGGCAATCTGG +
Preference number: 6 (lower is better)
Translates to: WSMLSGMNSPSL*MLVNDPFRAIW
Trigger: CCAGATTGCCCGGAATGGGTCATTCACTAGCATCAACAGTGAAGGAGAGTTCATTCCAGAGAGCATGGACCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS TCA 72 bp TACAAAAATCCGTTTGAGGAAGTCCCGAGTATAGTCTaGGACATGAGGTGGCAGCTTTGGGTTCGTTGGCTG +
Preference number: 6 (lower is better)
Translates to: YKNPFEEVPSIV*DMRWQLWVRWL
Trigger: CAGCCAACGAACCCAAAGCTGCCACCTCATGTCTCAGACTATACTCGGGACTTCCTCAAACGGATTTTTGTA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS CAA 90 bp ATTTACTTCCTTGCTGGTCTCTGGGCTCTCAGGGTTAAACTGAACTaGCTTAACAGCCAGCTCTCTTCCGGTATCAACATCATAGCAGAG +
Preference number: 6 (lower is better)
Translates to: IYFLAGLWALRVKLN*LNSQLSSGINIIAE
Trigger: CTCTGCTATGATGTTGATACCGGAAGAGAGCTGGCTGTTAAGCAAGTTCAGTTTAACCCTGAGAGCCCAGAGACCAGCAAGGAAGTAAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS TCA 72 bp ATGATTATCTGGGTAGCTCTGTGCCCTAGGCATCCGTaGTTTTGGGTAGCTTTCTCCATCCAAAGGACTATC +
Preference number: 6 (lower is better)
Translates to: MIIWVALCPRHP*FWVAFSIQRTI
Trigger: GATAGTCCTTTGGATGGAGAAAGCTACCCAAAATCACGGATGCCTAGGGCACAGAGCTACCCAGATAATCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS TCA 72 bp CTGAAGGTCGAAGTTTGGCCTCTACAAAAATCCGTTTaGGGAAGTCCCGAGTATAGTCTGAGACATGAGGTG +
Preference number: 6 (lower is better)
Translates to: LKVEVWPLQKSV*GSPEYSLRHEV
Trigger: CACCTCATGTCTCAGACTATACTCGGGACTTCCTCAAACGGATTTTTGTAGAGGCCAAACTTCGACCTTCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS TCA 72 bp ATAATGCACAAACATGTGCCGCAAGAGCTCCTCCGCTaGAGGTCGAAGTTTGGCCTCTACAAAAATCCGTTT +
Preference number: 6 (lower is better)
Translates to: IMHKHVPQELLR*RSKFGLYKNPF
Trigger: AAACGGATTTTTGTAGAGGCCAAACTTCGACCTTCAGCGGAGGAGCTCTTGCGGCACATGTTTGTGCATTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS TCA 72 bp CCATTTACTACAAGTAATATCTTGAGACTCTTCATGTaGATACTGCGATCCAGCAGTTCCACAGCTTTGTCC +
Preference number: 6 (lower is better)
Translates to: PFTTSNILRLFM*ILRSSSSTALS
Trigger: GGACAAAGCTGTGGAACTGCTGGATCGCAGTATTCACATGAAGAGTCTCAAGATATTACTTGTAGTAAATGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5
CDS TCA 72 bp GTTTCTTGTAAAGATAATGCTGGCCGACTGGCCTTATaGAGGACAGCCAAATCTTGCATGATTGAATTCAAA +
Preference number: 6 (lower is better)
Translates to: VSCKDNAGRLAL*RTAKSCMIEFK
Trigger: TTTGAATTCAATCATGCAAGATTTGGCTGTCCTTCATAAGGCCAGTCGGCCAGCATTATCTTTACAAGAAAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096575.5