RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MAP3K12 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000023050

Ensembl transcript IDs: ENSMUST00000023812.10, ENSMUST00000169367.8, ENSMUST00000169377.8, ENSMUST00000171565.8

Found 347 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GCACCCCAGTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTCTaGCCCAAAGCCAGGGTTTGGGCAGAGAAACAGGAACAAAGAAAT +
Preference number: 1 (lower is better)
Translates to: APQFFSLSHHMLLVV*PKARVWAEKQEQRN
Trigger: ATTTCTTTGTTCCTGTTTCTCTGCCCAAACCCTGGCTTTGGGCCAGACGACTAACAGCATGTGATGGCTCAGGCTGAAGAACTGGGGTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
3UTR GCA 90 bp CTTTATAGCTCTAGGGTAGTACTCGGAGTCATTCATTTCCACAGCTaGCAGTGTCCCCAGAACTTATTCGGTAATTGGTCAGGGGCGTCG +
Preference number: 1 (lower is better)
Translates to: LYSSRVVLGVIHFHS*QCPQNLFGNWSGAS
Trigger: CGACGCCCCTGACCAATTACCGAATAAGTTCTGGGGACACTGGCAGCTGTGGAAATGAATGACTCCGAGTACTACCCTAGAGCTATAAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
3UTR CCA 90 bp ATTCATTTCCACAGCTGCCAGTGTCCCCAGAACTTATTCGGTAATTaGTCAGGGGCGTCGTTCACTCTCAAGCCTGGCTTAAGGCTAAGA +
Preference number: 1 (lower is better)
Translates to: IHFHSCQCPQNLFGN*SGASFTLKPGLRLR
Trigger: TCTTAGCCTTAAGCCAGGCTTGAGAGTGAACGACGCCCCTGACCAATTACCGAATAAGTTCTGGGGACACTGGCAGCTGTGGAAATGAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
3UTR CCA 90 bp AAGCCTGGCTTTTCTATTGCCTACTTGCTTGTTCAACATAAGGAATaGGGTGAAGCAAGAAGGGGCCAGCTTCCTTTCTTTATAGCTCTA +
Preference number: 1 (lower is better)
Translates to: KPGFSIAYLLVQHKE*GEARRGQLPFFIAL
Trigger: TAGAGCTATAAAGAAAGGAAGCTGGCCCCTTCTTGCTTCACCCCATTCCTTATGTTGAACAAGCAAGTAGGCAATAGAAAAGCCAGGCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
3UTR CCA 90 bp TACTCATTCACCAAGAAAACCCTCGACAGTTGGGCCTGCATGGAGTaGTTATATTTCAAGGTTGTTCACAGGGGTTACAATATGACAGTC +
Preference number: 1 (lower is better)
Translates to: YSFTKKTLDSWACME*LYFKVVHRGYNMTV
Trigger: GACTGTCATATTGTAACCCCTGTGAACAACCTTGAAATATAACCACTCCATGCAGGCCCAACTGTCGAGGGTTTTCTTGGTGAATGAGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
3UTR CCA 90 bp TGTATTATACCACTCTACTCATTCACCAAGAAAACCCTCGACAGTTaGGCCTGCATGGAGTGGTTATATTTCAAGGTTGTTCACAGGGGT +
Preference number: 1 (lower is better)
Translates to: CIIPLYSFTKKTLDS*ACMEWLYFKVVHRG
Trigger: ACCCCTGTGAACAACCTTGAAATATAACCACTCCATGCAGGCCCAACTGTCGAGGGTTTTCTTGGTGAATGAGTAGAGTGGTATAATACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
3UTR-3UTR TCA 90 bp GGCACCAAGATAACAGTGGGGACTAACAGCACCCCAGTTCTTCAGCCTGAGCCAGAAACCTCAGAGGGATaGCCCAGCCTTAGTTTCTTT +
Preference number: 2 (lower is better)
Translates to: GTKITVGTNSTPVLQPEPETSEG*PSLSFF
Trigger: AAAGAAACTAAGGCTGGGTCATCCCTCTGAGGTTTC...TGGCTCAGGCTGAAGAACTGGGGTGCTGTTAGTCCCCACTGTTATCTTGGTGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
3UTR-3UTR CCA 90 bp GGCACCAAGATAACAGTGGGGACTAACAGCACCCCAGTTCTTCAGCCTGAGCCAGTTCACTCTCAAGCCTaGCTTAAGGCTAAGAAAGCC +
Preference number: 2 (lower is better)
Translates to: GTKITVGTNSTPVLQPEPVHSQA*LKAKKA
Trigger: GGCTTTCTTAGCCTTAAGCCAGGCTTGAGAGTGAAC...TGGCTCAGGCTGAAGAACTGGGGTGCTGTTAGTCCCCACTGTTATCTTGGTGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
3UTR-3UTR CCA 90 bp GGCACCAAGATAACAGTGGGGACTAACAGCACCCCAGTTCTTCAGCCTGAGCCAGTTCAACATAAGGAATaGGGTGAAGCAAGAAGGGGC +
Preference number: 2 (lower is better)
Translates to: GTKITVGTNSTPVLQPEPVQHKE*GEARRG
Trigger: GCCCCTTCTTGCTTCACCCCATTCCTTATGTTGAAC...TGGCTCAGGCTGAAGAACTGGGGTGCTGTTAGTCCCCACTGTTATCTTGGTGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
3UTR-3UTR GCA 90 bp GGCACCAAGATAACAGTGGGGACTAACAGCACCCCAGTTCTTCAGCCTGAGCCAATTCATTTCCACAGCTaGCAGTGTCCCCAGAACTTA +
Preference number: 2 (lower is better)
Translates to: GTKITVGTNSTPVLQPEPIHFHS*QCPQNL
Trigger: TAAGTTCTGGGGACACTGGCAGCTGTGGAAATGAAT...TGGCTCAGGCTGAAGAACTGGGGTGCTGTTAGTCCCCACTGTTATCTTGGTGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
3UTR-3UTR TCA 90 bp GTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTCTGGCCCAAAGCCAGGGTGCCCCATCTATCTGTTaGTTATGTGGCGCATATATA +
Preference number: 2 (lower is better)
Translates to: VLQPEPSHAVSRLAQSQGAPSIC*LCGAYI
Trigger: TATATATGCGCCACATAATCAACAGATAGATGGGGC...ACCCTGGCTTTGGGCCAGACGACTAACAGCATGTGATGGCTCAGGCTGAAGAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
3UTR-3UTR TCA 90 bp GGCACCAAGATAACAGTGGGGACTAACAGCACCCCAGTTCTTCAGCCTGAGCCAACAGGAACAAAGAAATaGGTTACATTGCCACCTGAG +
Preference number: 2 (lower is better)
Translates to: GTKITVGTNSTPVLQPEPTGTKK*VTLPPE
Trigger: CTCAGGTGGCAATGTAACTCATTTCTTTGTTCCTGT...TGGCTCAGGCTGAAGAACTGGGGTGCTGTTAGTCCCCACTGTTATCTTGGTGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
3UTR-3UTR GCA 90 bp GTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTCTGGCCCAAAGCCAGGGTAGAAATGAGTTACATTaGCACCTGAGAAACCTCAGA +
Preference number: 2 (lower is better)
Translates to: VLQPEPSHAVSRLAQSQGRNELH*HLRNLR
Trigger: TCTGAGGTTTCTCAGGTGGCAATGTAACTCATTTCT...ACCCTGGCTTTGGGCCAGACGACTAACAGCATGTGATGGCTCAGGCTGAAGAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
3UTR-3UTR CCA 90 bp CAGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCGTTCACTCTCAAGCCTaGCTTAAGGCTAAGAAAGCC +
Preference number: 2 (lower is better)
Translates to: QELVDSKDSKLGNGCPLFVHSQA*LKAKKA
Trigger: GGCTTTCTTAGCCTTAAGCCAGGCTTGAGAGTGAAC...GAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
3UTR-3UTR CCA 90 bp GTAGAAAGGCACTGTAGCCAGGTATGTTTACAAGGAGAATTTGGTACCAGTAAGCCCAAAGCCAGGGTTTaGGCAGAGAAACAGGAACAA +
Preference number: 2 (lower is better)
Translates to: VERHCSQVCLQGEFGTSKPKARV*AEKQEQ
Trigger: TTGTTCCTGTTTCTCTGCCCAAACCCTGGCTTTGGG...CTTACTGGTACCAAATTCTCCTTGTAAACATACCTGGCTACAGTGCCTTTCTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
3UTR-3UTR CCA 90 bp ATTTATGGAGCTGGGCAGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATAAAACCCTCGACAGTTaGGCCTGCATGGAGTGGTTA +
Preference number: 2 (lower is better)
Translates to: IYGAGQELVDSKDSKLGNKTLDS*ACMEWL
Trigger: TAACCACTCCATGCAGGCCCAACTGTCGAGGGTTTT...ATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTGCCCAGCTCCATAAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
3UTR-3UTR CCA 90 bp CATTTAGTGCACATGGTATTAAGCCAAACATCACAAATGGATGTCAGTTGGCTCCAGCTGGTGCATTTATaGAGCTGGGCAGGAACTCGT +
Preference number: 2 (lower is better)
Translates to: HLVHMVLSQTSQMDVSWLQLVHL*SWAGTR
Trigger: ACGAGTTCCTGCCCAGCTCCATAAATGCACCAGCTG...GAGCCAACTGACATCCATTTGTGATGTTTGGCTTAATACCATGTGCACTAAATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
3UTR CAA 90 bp ATGTATTATACCACTCTACTCATTCACCAAGAAAACCCTCGACAGTaGGGCCTGCATGGAGTGGTTATATTTCAAGGTTGTTCACAGGGG +
Preference number: 2 (lower is better)
Translates to: MYYTTLLIHQENPRQ*GLHGVVIFQGCSQG
Trigger: CCCCTGTGAACAACCTTGAAATATAACCACTCCATGCAGGCCCAACTGTCGAGGGTTTTCTTGGTGAATGAGTAGAGTGGTATAATACAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
3UTR-3UTR TCA 90 bp ATTTATGGAGCTGGGCAGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATGAAACCTCAGAGGGATaGCCCAGCCTTAGTTTCTTT +
Preference number: 2 (lower is better)
Translates to: IYGAGQELVDSKDSKLGNETSEG*PSLSFF
Trigger: AAAGAAACTAAGGCTGGGTCATCCCTCTGAGGTTTC...ATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTGCCCAGCTCCATAAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
3UTR CAA 90 bp CAGTGTTCAGGGATAGACAGTATAGAGACAAGCCTGGCTTTTCTATaGCCTACTTGCTTGTTCAACATAAGGAATGGGGTGAAGCAAGAA +
Preference number: 2 (lower is better)
Translates to: QCSGIDSIETSLAFL*PTCLFNIRNGVKQE
Trigger: TTCTTGCTTCACCCCATTCCTTATGTTGAACAAGCAAGTAGGCAATAGAAAAGCCAGGCTTGTCTCTATACTGTCTATCCCTGAACACTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
3UTR-3UTR TCA 90 bp GAGAACACCTCAGGAACCTTGGTTGTAGTGGTGTTACATAAACAACCTTGTGCAGCCCCATCTATCTGTTaGTTATGTGGCGCATATATA +
Preference number: 2 (lower is better)
Translates to: ENTSGTLVVVVLHKQPCAAPSIC*LCGAYI
Trigger: TATATATGCGCCACATAATCAACAGATAGATGGGGC...TGCACAAGGTTGTTTATGTAACACCACTACAACCAAGGTTCCTGAGGTGTTCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
3UTR-3UTR TCA 90 bp GACAAGCCTGGCTTTTCTATTGCCTACTTGCTTGTTCAACATAAGGAATGGGGTGCCCCATCTATCTGTTaGTTATGTGGCGCATATATA +
Preference number: 2 (lower is better)
Translates to: DKPGFSIAYLLVQHKEWGAPSIC*LCGAYI
Trigger: TATATATGCGCCACATAATCAACAGATAGATGGGGC...ACCCCATTCCTTATGTTGAACAAGCAAGTAGGCAATAGAAAAGCCAGGCTTGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
3UTR-3UTR GCA 90 bp GTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCTACCTTGCATACTTTAATTCATTTCCACAGCTaGCAGTGTCCCCAGAACTTA +
Preference number: 2 (lower is better)
Translates to: VRIVNLGMAAPCSTLHTLIHFHS*QCPQNL
Trigger: TAAGTTCTGGGGACACTGGCAGCTGTGGAAATGAAT...TAAAGTATGCAAGGTAGAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
3UTR-3UTR CCA 90 bp CTTCTAGTTTCCGGGATATACCCCTTCCCCTGTGGTATTTGTACATTTAGTGCATGGGCCTGCATGGAGTaGTTATATTTCAAGGTTGTT +
Preference number: 2 (lower is better)
Translates to: LLVSGIYPFPCGICTFSAWACME*LYFKVV
Trigger: AACAACCTTGAAATATAACCACTCCATGCAGGCCCA...TGCACTAAATGTACAAATACCACAGGGGAAGGGGTATATCCCGGAAACTAGAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
3UTR-3UTR CCA 90 bp ATTTATGGAGCTGGGCAGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATACAGTTGGGCCTGCATaGAGTGGTTATATTTCAAGG +
Preference number: 2 (lower is better)
Translates to: IYGAGQELVDSKDSKLGNTVGPA*SGYISR
Trigger: CCTTGAAATATAACCACTCCATGCAGGCCCAACTGT...ATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTGCCCAGCTCCATAAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
3UTR-3UTR TCA 90 bp GTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCTACCTTGCATACTTTAACAGGAACAAAGAAATaGGTTACATTGCCACCTGAG +
Preference number: 2 (lower is better)
Translates to: VRIVNLGMAAPCSTLHTLTGTKK*VTLPPE
Trigger: CTCAGGTGGCAATGTAACTCATTTCTTTGTTCCTGT...TAAAGTATGCAAGGTAGAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
3UTR-3UTR GCA 90 bp GTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCTACCTTGCATACTTTAGCCTGGCTTTTCTATTaGCTACTTGCTTGTTCAACA +
Preference number: 2 (lower is better)
Translates to: VRIVNLGMAAPCSTLHTLAWLFY*LLACST
Trigger: TGTTGAACAAGCAAGTAGGCAATAGAAAAGCCAGGC...TAAAGTATGCAAGGTAGAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
3UTR-3UTR CCA 90 bp CATTTAGTGCACATGGTATTAAGCCAAACATCACAAATGGATGTCAGTTGGCTCACAGTTGGGCCTGCATaGAGTGGTTATATTTCAAGG +
Preference number: 2 (lower is better)
Translates to: HLVHMVLSQTSQMDVSWLTVGPA*SGYISR
Trigger: CCTTGAAATATAACCACTCCATGCAGGCCCAACTGT...GAGCCAACTGACATCCATTTGTGATGTTTGGCTTAATACCATGTGCACTAAATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
3UTR-3UTR GCA 90 bp CATTTAGTGCACATGGTATTAAGCCAAACATCACAAATGGATGTCAGTTGGCTCGCCTGGCTTTTCTATTaGCTACTTGCTTGTTCAACA +
Preference number: 2 (lower is better)
Translates to: HLVHMVLSQTSQMDVSWLAWLFY*LLACST
Trigger: TGTTGAACAAGCAAGTAGGCAATAGAAAAGCCAGGC...GAGCCAACTGACATCCATTTGTGATGTTTGGCTTAATACCATGTGCACTAAATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
3UTR-3UTR GCA 90 bp CTCTCAAAGCTTAATTGTATTCCAGGACCTCAAATGACCTATTTGAAACAAGTAAAACTTGGGAATGGCTaGCCCTTGTTCTACCTTGCA +
Preference number: 2 (lower is better)
Translates to: LSKLNCIPGPQMTYLKQVKLGNG*PLFYLA
Trigger: TGCAAGGTAGAACAAGGGGCAGCCATTCCCAAGTTT...TACTTGTTTCAAATAGGTCATTTGAGGTCCTGGAATACAATTAAGCTTTGAGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
3UTR-3UTR CCA 90 bp AGTGACTTACGTGGGTGTTGTTCCTGTCTGATGTTATTTTTATACCTTTTAACTGTTCAACATAAGGAATaGGGTGAAGCAAGAAGGGGC +
Preference number: 2 (lower is better)
Translates to: SDLRGCCSCLMLFLYLLTVQHKE*GEARRG
Trigger: GCCCCTTCTTGCTTCACCCCATTCCTTATGTTGAAC...AGTTAAAAGGTATAAAAATAACATCAGACAGGAACAACACCCACGTAAGTCACT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000023812.10
ENSMUST00000171565.8
3UTR-3UTR GCA 90 bp AAATCCAAGTTGAAACCATGTATTATACCACTCTACTCATTCACCAAGAAAACCATTCATTTCCACAGCTaGCAGTGTCCCCAGAACTTA +
Preference number: 2 (lower is better)
Translates to: KSKLKPCIIPLYSFTKKTIHFHS*QCPQNL
Trigger: TAAGTTCTGGGGACACTGGCAGCTGTGGAAATGAAT...GGTTTTCTTGGTGAATGAGTAGAGTGGTATAATACATGGTTTCAACTTGGATTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
3UTR CAA 90 bp GAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATGGCTGCCCCTaGTTCTACCTTGCATACTTTAAAGTTCTAGTAATTGTTCATTTA +
Preference number: 2 (lower is better)
Translates to: ELVDSKDSKLGNGCP*FYLAYFKVLVIVHL
Trigger: TAAATGAACAATTACTAGAACTTTAAAGTATGCAAGGTAGAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTACTATCCACGAGTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
3UTR CAA 90 bp TTTCTCTCAAAGCTTAATTGTATTCCAGGACCTCAAATGACCTATTaGAAACAAGTAGAAAGGCACTGTAGCCAGGTATGTTTACAAGGA +
Preference number: 2 (lower is better)
Translates to: FLSKLNCIPGPQMTY*KQVERHCSQVCLQG
Trigger: TCCTTGTAAACATACCTGGCTACAGTGCCTTTCTACTTGTTTCAAATAGGTCATTTGAGGTCCTGGAATACAATTAAGCTTTGAGAGAAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
3UTR-3UTR CCA 90 bp AAATCCAAGTTGAAACCATGTATTATACCACTCTACTCATTCACCAAGAAAACCTGGGCCTGCATGGAGTaGTTATATTTCAAGGTTGTT +
Preference number: 2 (lower is better)
Translates to: KSKLKPCIIPLYSFTKKTWACME*LYFKVV
Trigger: AACAACCTTGAAATATAACCACTCCATGCAGGCCCA...GGTTTTCTTGGTGAATGAGTAGAGTGGTATAATACATGGTTTCAACTTGGATTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
3UTR-3UTR CAA 90 bp GTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTCTGGCCCAAAGCCAGGGTAGCCTGGCTTTTCTATaGCCTACTTGCTTGTTCAAC +
Preference number: 3 (lower is better)
Translates to: VLQPEPSHAVSRLAQSQGSLAFL*PTCLFN
Trigger: GTTGAACAAGCAAGTAGGCAATAGAAAAGCCAGGCT...ACCCTGGCTTTGGGCCAGACGACTAACAGCATGTGATGGCTCAGGCTGAAGAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
3UTR-3UTR CAA 90 bp CAGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCGCCCAAAGCCAGGGTTaGGGCAGAGAAACAGGAACA +
Preference number: 3 (lower is better)
Translates to: QELVDSKDSKLGNGCPLFAQSQG*GRETGT
Trigger: TGTTCCTGTTTCTCTGCCCAAACCCTGGCTTTGGGC...GAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
3UTR CCA 72 bp GCAGCTGGTGCATTTATGGAGCTGGGCAGGAACTCGTaGATAGTAAGGATAGTAAACTTGGGAATGGCTGCC +
Preference number: 3 (lower is better)
Translates to: AAGAFMELGRNS*IVRIVNLGMAA
Trigger: GGCAGCCATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTGCCCAGCTCCATAAATGCACCAGCTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
3UTR-3UTR CAA 90 bp ATGGATGTCAGTTGGCTCTTTGTGAAGTTAAGCTTGTGGTGTGGACCTGAGACAGAAAACCCTCGACAGTaGGGCCTGCATGGAGTGGTT +
Preference number: 3 (lower is better)
Translates to: MDVSWLFVKLSLWCGPETENPRQ*GLHGVV
Trigger: AACCACTCCATGCAGGCCCAACTGTCGAGGGTTTTC...TGTCTCAGGTCCACACCACAAGCTTAACTTCACAAAGAGCCAACTGACATCCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
3UTR-3UTR CAA 90 bp ATTTATGGAGCTGGGCAGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATGCCCAAAGCCAGGGTTaGGGCAGAGAAACAGGAACA +
Preference number: 3 (lower is better)
Translates to: IYGAGQELVDSKDSKLGNAQSQG*GRETGT
Trigger: TGTTCCTGTTTCTCTGCCCAAACCCTGGCTTTGGGC...ATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTGCCCAGCTCCATAAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
3UTR GCA 72 bp TCTAGGGTAGTACTCGGAGTCATTCATTTCCACAGCTaGCAGTGTCCCCAGAACTTATTCGGTAATTGGTCA +
Preference number: 3 (lower is better)
Translates to: SRVVLGVIHFHS*QCPQNLFGNWS
Trigger: TGACCAATTACCGAATAAGTTCTGGGGACACTGGCAGCTGTGGAAATGAATGACTCCGAGTACTACCCTAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
3UTR CCA 72 bp CATTCACCAAGAAAACCCTCGACAGTTGGGCCTGCATaGAGTGGTTATATTTCAAGGTTGTTCACAGGGGTT +
Preference number: 3 (lower is better)
Translates to: HSPRKPSTVGPA*SGYISRLFTGV
Trigger: AACCCCTGTGAACAACCTTGAAATATAACCACTCCATGCAGGCCCAACTGTCGAGGGTTTTCTTGGTGAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
3UTR-3UTR CAA 90 bp CAGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCTTCTCCATAGGTGTTTaGAGACCTCCTTGTTCTGAA +
Preference number: 3 (lower is better)
Translates to: QELVDSKDSKLGNGCPLFFSIGV*RPPCSE
Trigger: TTCAGAACAAGGAGGTCTCAAAACACCTATGGAGAA...GAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
3UTR CCA 72 bp ATGGATGTCAGTTGGCTCTTTGTGAAGTTAAGCTTGTaGTGTGGACCTGAGACACCTCTAGTTGTGTTCAGA +
Preference number: 3 (lower is better)
Translates to: MDVSWLFVKLSL*CGPETPLVVFR
Trigger: TCTGAACACAACTAGAGGTGTCTCAGGTCCACACCACAAGCTTAACTTCACAAAGAGCCAACTGACATCCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
3UTR-3UTR CAA 90 bp GACAAGCCTGGCTTTTCTATTGCCTACTTGCTTGTTCAACATAAGGAATGGGGTAGCCCCATCTATCTGTaGATTATGTGGCGCATATAT +
Preference number: 3 (lower is better)
Translates to: DKPGFSIAYLLVQHKEWGSPIYL*IMWRIY
Trigger: ATATATGCGCCACATAATCAACAGATAGATGGGGCT...ACCCCATTCCTTATGTTGAACAAGCAAGTAGGCAATAGAAAAGCCAGGCTTGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
3UTR-3UTR CAA 90 bp CTTCTAGTTTCCGGGATATACCCCTTCCCCTGTGGTATTTGTACATTTAGTGCATTCTCCATAGGTGTTTaGAGACCTCCTTGTTCTGAA +
Preference number: 3 (lower is better)
Translates to: LLVSGIYPFPCGICTFSAFSIGV*RPPCSE
Trigger: TTCAGAACAAGGAGGTCTCAAAACACCTATGGAGAA...TGCACTAAATGTACAAATACCACAGGGGAAGGGGTATATCCCGGAAACTAGAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
3UTR-3UTR CAA 90 bp ATGGATGTCAGTTGGCTCTTTGTGAAGTTAAGCTTGTGGTGTGGACCTGAGACACCTCAAATGACCTATTaGAAACAAGTAGAAAGGCAC +
Preference number: 3 (lower is better)
Translates to: MDVSWLFVKLSLWCGPETPQMTY*KQVERH
Trigger: GTGCCTTTCTACTTGTTTCAAATAGGTCATTTGAGG...TGTCTCAGGTCCACACCACAAGCTTAACTTCACAAAGAGCCAACTGACATCCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
3UTR CCA 72 bp TTTTCTATTGCCTACTTGCTTGTTCAACATAAGGAATaGGGTGAAGCAAGAAGGGGCCAGCTTCCTTTCTTT +
Preference number: 3 (lower is better)
Translates to: FSIAYLLVQHKE*GEARRGQLPFF
Trigger: AAAGAAAGGAAGCTGGCCCCTTCTTGCTTCACCCCATTCCTTATGTTGAACAAGCAAGTAGGCAATAGAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
3UTR-3UTR CAA 90 bp GTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCTACCTTGCATACTTTAAGCCCCATCTATCTGTaGATTATGTGGCGCATATAT +
Preference number: 3 (lower is better)
Translates to: VRIVNLGMAAPCSTLHTLSPIYL*IMWRIY
Trigger: ATATATGCGCCACATAATCAACAGATAGATGGGGCT...TAAAGTATGCAAGGTAGAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
3UTR-3UTR CAA 90 bp GTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCTACCTTGCATACTTTACTATTGCCTACTTGCTaGTTCAACATAAGGAATGGG +
Preference number: 3 (lower is better)
Translates to: VRIVNLGMAAPCSTLHTLLLPTC*FNIRNG
Trigger: CCCATTCCTTATGTTGAACAAGCAAGTAGGCAATAG...TAAAGTATGCAAGGTAGAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
3UTR-3UTR CAA 90 bp ACCCCTTCCCCTGTGGTATTTGTACATTTAGTGCACATGGTATTAAGCCAAACACACAGGTTTTGGATTTaGAAGAGTGAGCTAAGGAAC +
Preference number: 3 (lower is better)
Translates to: TPSPVVFVHLVHMVLSQTHRFWI*KSELRN
Trigger: GTTCCTTAGCTCACTCTTCAAAATCCAAAACCTGTG...TGTTTGGCTTAATACCATGTGCACTAAATGTACAAATACCACAGGGGAAGGGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
3UTR GCA 72 bp CTCGTGGATAGTAAGGATAGTAAACTTGGGAATGGCTaGCCCTTGTTCTACCTTGCATACTTTAAAGTTCTA +
Preference number: 3 (lower is better)
Translates to: LVDSKDSKLGNG*PLFYLAYFKVL
Trigger: TAGAACTTTAAAGTATGCAAGGTAGAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTACTATCCACGAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
3UTR CCA 72 bp ATGGTATTAAGCCAAACATCACAAATGGATGTCAGTTaGCTCTTTGTGAAGTTAAGCTTGTGGTGTGGACCT +
Preference number: 3 (lower is better)
Translates to: MVLSQTSQMDVS*LFVKLSLWCGP
Trigger: AGGTCCACACCACAAGCTTAACTTCACAAAGAGCCAACTGACATCCATTTGTGATGTTTGGCTTAATACCAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
3UTR TCA 72 bp AGTGTCACCAACTTAACATCATTTGTTATGTTCTTCTaGGAACACCTCAGGAACCTTGGTTGTAGTGGTGTT +
Preference number: 3 (lower is better)
Translates to: SVTNLTSFVMFF*EHLRNLGCSGV
Trigger: AACACCACTACAACCAAGGTTCCTGAGGTGTTCTCAGAAGAACATAACAAATGATGTTAAGTTGGTGACACT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
3UTR-3UTR CAA 90 bp CTCTCAAAGCTTAATTGTATTCCAGGACCTCAAATGACCTATTTGAAACAAGTAAGCCTGGCTTTTCTATaGCCTACTTGCTTGTTCAAC +
Preference number: 3 (lower is better)
Translates to: LSKLNCIPGPQMTYLKQVSLAFL*PTCLFN
Trigger: GTTGAACAAGCAAGTAGGCAATAGAAAAGCCAGGCT...TACTTGTTTCAAATAGGTCATTTGAGGTCCTGGAATACAATTAAGCTTTGAGAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
3UTR-3UTR CAA 90 bp AAATCCAAGTTGAAACCATGTATTATACCACTCTACTCATTCACCAAGAAAACCAGCCTGGCTTTTCTATaGCCTACTTGCTTGTTCAAC +
Preference number: 3 (lower is better)
Translates to: KSKLKPCIIPLYSFTKKTSLAFL*PTCLFN
Trigger: GTTGAACAAGCAAGTAGGCAATAGAAAAGCCAGGCT...GGTTTTCTTGGTGAATGAGTAGAGTGGTATAATACATGGTTTCAACTTGGATTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
3UTR-3UTR CAA 90 bp TTGCTGCTACCCAGTGATAATGAAATGTACACTGAATGCCTTTCTCTCAAAGCTGGTTATATTTCAAGGTaGTTCACAGGGGTTACAATA +
Preference number: 3 (lower is better)
Translates to: LLLPSDNEMYTECLSLKAGYISR*FTGVTI
Trigger: TATTGTAACCCCTGTGAACAACCTTGAAATATAACC...AGCTTTGAGAGAAAGGCATTCAGTGTACATTTCATTATCACTGGGTAGCAGCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
3UTR-3UTR CAA 90 bp AGTGACTTACGTGGGTGTTGTTCCTGTCTGATGTTATTTTTATACCTTTTAACTAGCCCCATCTATCTGTaGATTATGTGGCGCATATAT +
Preference number: 3 (lower is better)
Translates to: SDLRGCCSCLMLFLYLLTSPIYL*IMWRIY
Trigger: ATATATGCGCCACATAATCAACAGATAGATGGGGCT...AGTTAAAAGGTATAAAAATAACATCAGACAGGAACAACACCCACGTAAGTCACT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000023812.10
ENSMUST00000171565.8
3UTR-3UTR CAA 90 bp AAATCCAAGTTGAAACCATGTATTATACCACTCTACTCATTCACCAAGAAAACCCTATTGCCTACTTGCTaGTTCAACATAAGGAATGGG +
Preference number: 3 (lower is better)
Translates to: KSKLKPCIIPLYSFTKKTLLPTC*FNIRNG
Trigger: CCCATTCCTTATGTTGAACAAGCAAGTAGGCAATAG...GGTTTTCTTGGTGAATGAGTAGAGTGGTATAATACATGGTTTCAACTTGGATTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
3UTR-3UTR CAA 90 bp CTCTCAAAGCTTAATTGTATTCCAGGACCTCAAATGACCTATTTGAAACAAGTACTGACTTATTCTTCTTaGTGTTTTACAGGCTTTCCT +
Preference number: 3 (lower is better)
Translates to: LSKLNCIPGPQMTYLKQVLTYSS*CFTGFP
Trigger: AGGAAAGCCTGTAAAACACAAAGAAGAATAAGTCAG...TACTTGTTTCAAATAGGTCATTTGAGGTCCTGGAATACAATTAAGCTTTGAGAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
CDS-3UTR TCA 90 bp GGCACCAAGATAACAGTGGGGACTAACAGCACCCCAGTTCTTCAGCCTGAGCCATGCTCGACTCTCAGGTaGCCCAGTGGCTCCCCCTGG +
Preference number: 4 (lower is better)
Translates to: GTKITVGTNSTPVLQPEPCSTLR*PSGSPW
Trigger: CCAGGGGGAGCCACTGGGTCACCTGAGAGTCGAGCA...TGGCTCAGGCTGAAGAACTGGGGTGCTGTTAGTCCCCACTGTTATCTTGGTGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR TCA 90 bp GGCACCAAGATAACAGTGGGGACTAACAGCACCCCAGTTCTTCAGCCTGAGCCAAGCACCCTGAGCCCCTaGGCCTACCCACTGCAGGTC +
Preference number: 4 (lower is better)
Translates to: GTKITVGTNSTPVLQPEPSTLSP*AYPLQV
Trigger: GACCTGCAGTGGGTAGGCTCAGGGGCTCAGGGTGCT...TGGCTCAGGCTGAAGAACTGGGGTGCTGTTAGTCCCCACTGTTATCTTGGTGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp GTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTCTGGCCCAAAGCCAGGGTGCAGCGGGGGTCAAGTaGTGGGACCCAGCCCGGTTT +
Preference number: 4 (lower is better)
Translates to: VLQPEPSHAVSRLAQSQGAAGVK*WDPARF
Trigger: AAACCGGGCTGGGTCCCAGCACTTGACCCCCGCTGC...ACCCTGGCTTTGGGCCAGACGACTAACAGCATGTGATGGCTCAGGCTGAAGAAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp CTACCTGCCCCTCCAGTGTTCAGGGATAGACAGTATAGAGACAAGCCTGGCTTTGGGAGGCTCTCCACCTaGGGAGGGGCTGGGTCCTCC +
Preference number: 4 (lower is better)
Translates to: LPAPPVFRDRQYRDKPGFGRLST*GGAGSS
Trigger: GGAGGACCCAGCCCCTCCCCAGGTGGAGAGCCTCCC...AAAGCCAGGCTTGTCTCTATACTGTCTATCCCTGAACACTGGAGGGGCAGGTAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp GTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTCTGGCCCAAAGCCAGGGTCCCAGTGGCTCCCCCTaGCCCACCTGTATCCTGCTC +
Preference number: 4 (lower is better)
Translates to: VLQPEPSHAVSRLAQSQGPSGSP*PTCILL
Trigger: GAGCAGGATACAGGTGGGCCAGGGGGAGCCACTGGG...ACCCTGGCTTTGGGCCAGACGACTAACAGCATGTGATGGCTCAGGCTGAAGAAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp GTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTCTGGCCCAAAGCCAGGGTGCGGGGGTCAAGTGCTaGGACCCAGCCCGGTTTCCT +
Preference number: 4 (lower is better)
Translates to: VLQPEPSHAVSRLAQSQGAGVKC*DPARFP
Trigger: AGGAAACCGGGCTGGGTCCCAGCACTTGACCCCCGC...ACCCTGGCTTTGGGCCAGACGACTAACAGCATGTGATGGCTCAGGCTGAAGAAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR TCA 90 bp GGGACTAACAGCACCCCAGTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTTGCTCGACTCTCAGGTaGCCCAGTGGCTCCCCCTGG +
Preference number: 4 (lower is better)
Translates to: GTNSTPVLQPEPSHAVSRCSTLR*PSGSPW
Trigger: CCAGGGGGAGCCACTGGGTCACCTGAGAGTCGAGCA...ACGACTAACAGCATGTGATGGCTCAGGCTGAAGAACTGGGGTGCTGTTAGTCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR TCA 90 bp GGGACTAACAGCACCCCAGTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTGCACTGGCCTTTCGGTaGCGGGTCTTGCCACGCCGA +
Preference number: 4 (lower is better)
Translates to: GTNSTPVLQPEPSHAVSRALAFR*RVLPRR
Trigger: TCGGCGTGGCAAGACCCGTCACCGAAAGGCCAGTGC...ACGACTAACAGCATGTGATGGCTCAGGCTGAAGAACTGGGGTGCTGTTAGTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp GGCACCAAGATAACAGTGGGGACTAACAGCACCCCAGTTCTTCAGCCTGAGCCAGCAGGTCTCCACAGCTaGCCTTGGCACTGGCCTTTC +
Preference number: 4 (lower is better)
Translates to: GTKITVGTNSTPVLQPEPAGLHS*PWHWPF
Trigger: GAAAGGCCAGTGCCAAGGGCAGCTGTGGAGACCTGC...TGGCTCAGGCTGAAGAACTGGGGTGCTGTTAGTCCCCACTGTTATCTTGGTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp GTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTCTGGCCCAAAGCCAGGGTATGGGGTGGCAAAGCTaGACGAAGCCCAGGCAGGTC +
Preference number: 4 (lower is better)
Translates to: VLQPEPSHAVSRLAQSQGMGWQS*TKPRQV
Trigger: GACCTGCCTGGGCTTCGTGCAGCTTTGCCACCCCAT...ACCCTGGCTTTGGGCCAGACGACTAACAGCATGTGATGGCTCAGGCTGAAGAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp GGCACCAAGATAACAGTGGGGACTAACAGCACCCCAGTTCTTCAGCCTGAGCCAGTTTCCTCCCCGGCCTaGAGTCCCTTCCCTTCCAGT +
Preference number: 4 (lower is better)
Translates to: GTKITVGTNSTPVLQPEPVSSPA*SPFPSS
Trigger: ACTGGAAGGGAAGGGACTGCAGGCCGGGGAGGAAAC...TGGCTCAGGCTGAAGAACTGGGGTGCTGTTAGTCCCCACTGTTATCTTGGTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp GTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTCTGGCCCAAAGCCAGGGTTCCAGGCTCATGGGGTaGCAAAGCTGCACGAAGCCC +
Preference number: 4 (lower is better)
Translates to: VLQPEPSHAVSRLAQSQGSRLMG*QSCTKP
Trigger: GGGCTTCGTGCAGCTTTGCCACCCCATGAGCCTGGA...ACCCTGGCTTTGGGCCAGACGACTAACAGCATGTGATGGCTCAGGCTGAAGAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR TCA 90 bp GGGACTAACAGCACCCCAGTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTTGTCCAGGGCATGTCTaGGCTCCTCCCTTCTCCGCA +
Preference number: 4 (lower is better)
Translates to: GTNSTPVLQPEPSHAVSRCPGHV*APPFSA
Trigger: TGCGGAGAAGGGAGGAGCTCAGACATGCCCTGGACA...ACGACTAACAGCATGTGATGGCTCAGGCTGAAGAACTGGGGTGCTGTTAGTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp GGGACTAACAGCACCCCAGTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTTTCGGTGACGGGTCTTaGCACGCCGACTCCTTCCAG +
Preference number: 4 (lower is better)
Translates to: GTNSTPVLQPEPSHAVSRFGDGS*HADSFQ
Trigger: CTGGAAGGAGTCGGCGTGGCAAGACCCGTCACCGAA...ACGACTAACAGCATGTGATGGCTCAGGCTGAAGAACTGGGGTGCTGTTAGTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp GGGACTAACAGCACCCCAGTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTATGGGGTGGCAAAGCTaGACGAAGCCCAGGCAGGTC +
Preference number: 4 (lower is better)
Translates to: GTNSTPVLQPEPSHAVSRMGWQS*TKPRQV
Trigger: GACCTGCCTGGGCTTCGTGCAGCTTTGCCACCCCAT...ACGACTAACAGCATGTGATGGCTCAGGCTGAAGAACTGGGGTGCTGTTAGTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp GGCACCAAGATAACAGTGGGGACTAACAGCACCCCAGTTCTTCAGCCTGAGCCATTCTCCAGGCCCTACTaGTGGAGGGGGTTCCCCTTT +
Preference number: 4 (lower is better)
Translates to: GTKITVGTNSTPVLQPEPFSRPY*WRGFPF
Trigger: AAAGGGGAACCCCCTCCACCAGTAGGGCCTGGAGAA...TGGCTCAGGCTGAAGAACTGGGGTGCTGTTAGTCCCCACTGTTATCTTGGTGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp GTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTCTGGCCCAAAGCCAGGGTTCAGGATTGGGGCCCTaGCCATCCTGGTGTTGCATG +
Preference number: 4 (lower is better)
Translates to: VLQPEPSHAVSRLAQSQGSGLGP*PSWCCM
Trigger: CATGCAACACCAGGATGGCCAGGGCCCCAATCCTGA...ACCCTGGCTTTGGGCCAGACGACTAACAGCATGTGATGGCTCAGGCTGAAGAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR TCA 90 bp CAGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCGCACTGGCCTTTCGGTaGCGGGTCTTGCCACGCCGA +
Preference number: 4 (lower is better)
Translates to: QELVDSKDSKLGNGCPLFALAFR*RVLPRR
Trigger: TCGGCGTGGCAAGACCCGTCACCGAAAGGCCAGTGC...GAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR TCA 90 bp GGCACCAAGATAACAGTGGGGACTAACAGCACCCCAGTTCTTCAGCCTGAGCCAAGTGCTGTCACAGTCTaGGTCTTCAGGATTGGGGCC +
Preference number: 4 (lower is better)
Translates to: GTKITVGTNSTPVLQPEPSAVTV*VFRIGA
Trigger: GGCCCCAATCCTGAAGACTCAGACTGTGACAGCACT...TGGCTCAGGCTGAAGAACTGGGGTGCTGTTAGTCCCCACTGTTATCTTGGTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp GGCACCAAGATAACAGTGGGGACTAACAGCACCCCAGTTCTTCAGCCTGAGCCACTTCAAGGAAGCCACTaGCACTCTGGCACTGCAGAC +
Preference number: 4 (lower is better)
Translates to: GTKITVGTNSTPVLQPEPLQGSH*HSGTAD
Trigger: GTCTGCAGTGCCAGAGTGGCAGTGGCTTCCTTGAAG...TGGCTCAGGCTGAAGAACTGGGGTGCTGTTAGTCCCCACTGTTATCTTGGTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp GTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTCTGGCCCAAAGCCAGGGTCCTGAGCCTACCCACTaGAGGTCCAGGATTTCCTCA +
Preference number: 4 (lower is better)
Translates to: VLQPEPSHAVSRLAQSQGPEPTH*RSRISS
Trigger: TGAGGAAATCCTGGACCTGCAGTGGGTAGGCTCAGG...ACCCTGGCTTTGGGCCAGACGACTAACAGCATGTGATGGCTCAGGCTGAAGAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp GGCACCAAGATAACAGTGGGGACTAACAGCACCCCAGTTCTTCAGCCTGAGCCATGCCAACTTCTGGTGTaGCACTTGGGGAAGGCTCAC +
Preference number: 4 (lower is better)
Translates to: GTKITVGTNSTPVLQPEPCQLLV*HLGKAH
Trigger: GTGAGCCTTCCCCAAGTGGCACACCAGAAGTTGGCA...TGGCTCAGGCTGAAGAACTGGGGTGCTGTTAGTCCCCACTGTTATCTTGGTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp GGGACTAACAGCACCCCAGTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTATTGGCAAAAGGCTCTaGGGGAGGCTCTCCACCTGG +
Preference number: 4 (lower is better)
Translates to: GTNSTPVLQPEPSHAVSRIGKRL*GRLSTW
Trigger: CCAGGTGGAGAGCCTCCCCCAGAGCCTTTTGCCAAT...ACGACTAACAGCATGTGATGGCTCAGGCTGAAGAACTGGGGTGCTGTTAGTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp GTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTCTGGCCCAAAGCCAGGGTGCTGGAGGACACTATTaGCAAAAGGCTCTGGGGGAG +
Preference number: 4 (lower is better)
Translates to: VLQPEPSHAVSRLAQSQGAGGHY*QKALGE
Trigger: CTCCCCCAGAGCCTTTTGCCAATAGTGTCCTCCAGC...ACCCTGGCTTTGGGCCAGACGACTAACAGCATGTGATGGCTCAGGCTGAAGAAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp GTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTCTGGCCCAAAGCCAGGGTAAGCCACTGCCACTCTaGCACTGCAGACGTACCTCA +
Preference number: 4 (lower is better)
Translates to: VLQPEPSHAVSRLAQSQGKPLPL*HCRRTS
Trigger: TGAGGTACGTCTGCAGTGCCAGAGTGGCAGTGGCTT...ACCCTGGCTTTGGGCCAGACGACTAACAGCATGTGATGGCTCAGGCTGAAGAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp GGCACCAAGATAACAGTGGGGACTAACAGCACCCCAGTTCTTCAGCCTGAGCCAGAGGGTACAGGCAGGTaGAGACTGTTGCTTCCCACA +
Preference number: 4 (lower is better)
Translates to: GTKITVGTNSTPVLQPEPEGTGR*RLLLPT
Trigger: TGTGGGAAGCAACAGTCTCCACCTGCCTGTACCCTC...TGGCTCAGGCTGAAGAACTGGGGTGCTGTTAGTCCCCACTGTTATCTTGGTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp CTACCTGCCCCTCCAGTGTTCAGGGATAGACAGTATAGAGACAAGCCTGGCTTTAGCTGCCCTTGGCACTaGCCTTTCGGTGACGGGTCT +
Preference number: 4 (lower is better)
Translates to: LPAPPVFRDRQYRDKPGFSCPWH*PFGDGS
Trigger: AGACCCGTCACCGAAAGGCCAGTGCCAAGGGCAGCT...AAAGCCAGGCTTGTCTCTATACTGTCTATCCCTGAACACTGGAGGGGCAGGTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp GGGACTAACAGCACCCCAGTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTGCGAATCTGGGCTGGTaGAACCAGGAGCTGATCCCT +
Preference number: 4 (lower is better)
Translates to: GTNSTPVLQPEPSHAVSRANLGW*NQELIP
Trigger: AGGGATCAGCTCCTGGTTCCACCAGCCCAGATTCGC...ACGACTAACAGCATGTGATGGCTCAGGCTGAAGAACTGGGGTGCTGTTAGTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp GGCACCAAGATAACAGTGGGGACTAACAGCACCCCAGTTCTTCAGCCTGAGCCAGGTACTGCCAACTTCTaGTGTGCCACTTGGGGAAGG +
Preference number: 4 (lower is better)
Translates to: GTKITVGTNSTPVLQPEPGTANF*CATWGR
Trigger: CCTTCCCCAAGTGGCACACCAGAAGTTGGCAGTACC...TGGCTCAGGCTGAAGAACTGGGGTGCTGTTAGTCCCCACTGTTATCTTGGTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp GGGACTAACAGCACCCCAGTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTTCAGGATTGGGGCCCTaGCCATCCTGGTGTTGCATG +
Preference number: 4 (lower is better)
Translates to: GTNSTPVLQPEPSHAVSRSGLGP*PSWCCM
Trigger: CATGCAACACCAGGATGGCCAGGGCCCCAATCCTGA...ACGACTAACAGCATGTGATGGCTCAGGCTGAAGAACTGGGGTGCTGTTAGTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR TCA 90 bp GGGACTAACAGCACCCCAGTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTAGTGCTGTCACAGTCTaGGTCTTCAGGATTGGGGCC +
Preference number: 4 (lower is better)
Translates to: GTNSTPVLQPEPSHAVSRSAVTV*VFRIGA
Trigger: GGCCCCAATCCTGAAGACTCAGACTGTGACAGCACT...ACGACTAACAGCATGTGATGGCTCAGGCTGAAGAACTGGGGTGCTGTTAGTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp GGGACTAACAGCACCCCAGTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTGGCCCACCTGTATCCTaGTCATGTAGCTGGAGGACA +
Preference number: 4 (lower is better)
Translates to: GTNSTPVLQPEPSHAVSRGPPVS*SCSWRT
Trigger: TGTCCTCCAGCTACATGAGCAGGATACAGGTGGGCC...ACGACTAACAGCATGTGATGGCTCAGGCTGAAGAACTGGGGTGCTGTTAGTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp GGGACTAACAGCACCCCAGTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTTCATGCCACCAGCGATaGCCATGGACCAGTCAACCA +
Preference number: 4 (lower is better)
Translates to: GTNSTPVLQPEPSHAVSRSCHQR*PWTSQP
Trigger: TGGTTGACTGGTCCATGGGCATCGCTGGTGGCATGA...ACGACTAACAGCATGTGATGGCTCAGGCTGAAGAACTGGGGTGCTGTTAGTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp GGCACCAAGATAACAGTGGGGACTAACAGCACCCCAGTTCTTCAGCCTGAGCCAGAGGCGATGTCCAGGTaGAGCAAGATCTGTCGGAAT +
Preference number: 4 (lower is better)
Translates to: GTKITVGTNSTPVLQPEPEAMSR*SKICRN
Trigger: ATTCCGACAGATCTTGCTGCACCTGGACATCGCCTC...TGGCTCAGGCTGAAGAACTGGGGTGCTGTTAGTCCCCACTGTTATCTTGGTGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp CTACCTGCCCCTCCAGTGTTCAGGGATAGACAGTATAGAGACAAGCCTGGCTTTTGGCCATCCTGGTGTTaGATGGGCAAGGAGCTGGCT +
Preference number: 4 (lower is better)
Translates to: LPAPPVFRDRQYRDKPGFWPSWC*MGKELA
Trigger: AGCCAGCTCCTTGCCCATGCAACACCAGGATGGCCA...AAAGCCAGGCTTGTCTCTATACTGTCTATCCCTGAACACTGGAGGGGCAGGTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp ATTTATGGAGCTGGGCAGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATGGGAGGCTCTCCACCTaGGGAGGGGCTGGGTCCTCC +
Preference number: 4 (lower is better)
Translates to: IYGAGQELVDSKDSKLGNGRLST*GGAGSS
Trigger: GGAGGACCCAGCCCCTCCCCAGGTGGAGAGCCTCCC...ATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTGCCCAGCTCCATAAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp GGGACTAACAGCACCCCAGTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTGCTGGAGGACACTATTaGCAAAAGGCTCTGGGGGAG +
Preference number: 4 (lower is better)
Translates to: GTNSTPVLQPEPSHAVSRAGGHY*QKALGE
Trigger: CTCCCCCAGAGCCTTTTGCCAATAGTGTCCTCCAGC...ACGACTAACAGCATGTGATGGCTCAGGCTGAAGAACTGGGGTGCTGTTAGTCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp GGGACTAACAGCACCCCAGTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTAAGCCACTGCCACTCTaGCACTGCAGACGTACCTCA +
Preference number: 4 (lower is better)
Translates to: GTNSTPVLQPEPSHAVSRKPLPL*HCRRTS
Trigger: TGAGGTACGTCTGCAGTGCCAGAGTGGCAGTGGCTT...ACGACTAACAGCATGTGATGGCTCAGGCTGAAGAACTGGGGTGCTGTTAGTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp CTACCTGCCCCTCCAGTGTTCAGGGATAGACAGTATAGAGACAAGCCTGGCTTTAACCATCTGGGCAGCTaGAGGGTACAGGCAGGTGGA +
Preference number: 4 (lower is better)
Translates to: LPAPPVFRDRQYRDKPGFNHLGS*RVQAGG
Trigger: TCCACCTGCCTGTACCCTCCAGCTGCCCAGATGGTT...AAAGCCAGGCTTGTCTCTATACTGTCTATCCCTGAACACTGGAGGGGCAGGTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp GGGACTAACAGCACCCCAGTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTCGGAGTAGAAGGTCATaGTGGAGTCCACGGAGAGCA +
Preference number: 4 (lower is better)
Translates to: GTNSTPVLQPEPSHAVSRRSRRS*WSPRRA
Trigger: TGCTCTCCGTGGACTCCACCATGACCTTCTACTCCG...ACGACTAACAGCATGTGATGGCTCAGGCTGAAGAACTGGGGTGCTGTTAGTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp GGGACTAACAGCACCCCAGTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTGGTACTGCCAACTTCTaGTGTGCCACTTGGGGAAGG +
Preference number: 4 (lower is better)
Translates to: GTNSTPVLQPEPSHAVSRGTANF*CATWGR
Trigger: CCTTCCCCAAGTGGCACACCAGAAGTTGGCAGTACC...ACGACTAACAGCATGTGATGGCTCAGGCTGAAGAACTGGGGTGCTGTTAGTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp CTACCTGCCCCTCCAGTGTTCAGGGATAGACAGTATAGAGACAAGCCTGGCTTTGCATGGGCAAGGAGCTaGCTTCACGTTCAGGGACCA +
Preference number: 4 (lower is better)
Translates to: LPAPPVFRDRQYRDKPGFAWARS*LHVQGP
Trigger: TGGTCCCTGAACGTGAAGCCAGCTCCTTGCCCATGC...AAAGCCAGGCTTGTCTCTATACTGTCTATCCCTGAACACTGGAGGGGCAGGTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR TCA 90 bp TTTCCGGGATATACCCCTTCCCCTGTGGTATTTGTACATTTAGTGCACATGGTAGCACTGGCCTTTCGGTaGCGGGTCTTGCCACGCCGA +
Preference number: 4 (lower is better)
Translates to: FPGYTPSPVVFVHLVHMVALAFR*RVLPRR
Trigger: TCGGCGTGGCAAGACCCGTCACCGAAAGGCCAGTGC...TACCATGTGCACTAAATGTACAAATACCACAGGGGAAGGGGTATATCCCGGAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
CDS-3UTR GCA 90 bp GGGACTAACAGCACCCCAGTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTGAGGCGATGTCCAGGTaGAGCAAGATCTGTCGGAAT +
Preference number: 4 (lower is better)
Translates to: GTNSTPVLQPEPSHAVSREAMSR*SKICRN
Trigger: ATTCCGACAGATCTTGCTGCACCTGGACATCGCCTC...ACGACTAACAGCATGTGATGGCTCAGGCTGAAGAACTGGGGTGCTGTTAGTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp CTTCTAGTTTCCGGGATATACCCCTTCCCCTGTGGTATTTGTACATTTAGTGCAGCAGCGGGGGTCAAGTaGTGGGACCCAGCCCGGTTT +
Preference number: 4 (lower is better)
Translates to: LLVSGIYPFPCGICTFSAAAGVK*WDPARF
Trigger: AAACCGGGCTGGGTCCCAGCACTTGACCCCCGCTGC...TGCACTAAATGTACAAATACCACAGGGGAAGGGGTATATCCCGGAAACTAGAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
CDS-3UTR CCA 90 bp GGGACTAACAGCACCCCAGTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTGAAGTACACATTGGGTaGGCGTCAGGTCTTTCTCGG +
Preference number: 4 (lower is better)
Translates to: GTNSTPVLQPEPSHAVSREVHIG*ASGLSR
Trigger: CCGAGAAAGACCTGACGCCCACCCAATGTGTACTTC...ACGACTAACAGCATGTGATGGCTCAGGCTGAAGAACTGGGGTGCTGTTAGTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp GTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTCTGGCCCAAAGCCAGGGTTCTCGAAGTACACATTaGGTGGGCGTCAGGTCTTTC +
Preference number: 4 (lower is better)
Translates to: VLQPEPSHAVSRLAQSQGSRSTH*VGVRSF
Trigger: GAAAGACCTGACGCCCACCCAATGTGTACTTCGAGA...ACCCTGGCTTTGGGCCAGACGACTAACAGCATGTGATGGCTCAGGCTGAAGAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp CATTTAGTGCACATGGTATTAAGCCAAACATCACAAATGGATGTCAGTTGGCTCGGGAGGCTCTCCACCTaGGGAGGGGCTGGGTCCTCC +
Preference number: 4 (lower is better)
Translates to: HLVHMVLSQTSQMDVSWLGRLST*GGAGSS
Trigger: GGAGGACCCAGCCCCTCCCCAGGTGGAGAGCCTCCC...GAGCCAACTGACATCCATTTGTGATGTTTGGCTTAATACCATGTGCACTAAATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
CDS-3UTR CCA 90 bp CTACCTGCCCCTCCAGTGTTCAGGGATAGACAGTATAGAGACAAGCCTGGCTTTAAGCCACTGCCACTCTaGCACTGCAGACGTACCTCA +
Preference number: 4 (lower is better)
Translates to: LPAPPVFRDRQYRDKPGFKPLPL*HCRRTS
Trigger: TGAGGTACGTCTGCAGTGCCAGAGTGGCAGTGGCTT...AAAGCCAGGCTTGTCTCTATACTGTCTATCCCTGAACACTGGAGGGGCAGGTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp GAGAACACCTCAGGAACCTTGGTTGTAGTGGTGTTACATAAACAACCTTGTGCAGCGGGGGTCAAGTGCTaGGACCCAGCCCGGTTTCCT +
Preference number: 4 (lower is better)
Translates to: ENTSGTLVVVVLHKQPCAAGVKC*DPARFP
Trigger: AGGAAACCGGGCTGGGTCCCAGCACTTGACCCCCGC...TGCACAAGGTTGTTTATGTAACACCACTACAACCAAGGTTCCTGAGGTGTTCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
CDS-3UTR CCA 90 bp GGGACTAACAGCACCCCAGTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTTTCTGGTGTGCCACTTaGGGAAGGCTCACTAGCTGT +
Preference number: 4 (lower is better)
Translates to: GTNSTPVLQPEPSHAVSRFWCAT*GRLTSC
Trigger: ACAGCTAGTGAGCCTTCCCCAAGTGGCACACCAGAA...ACGACTAACAGCATGTGATGGCTCAGGCTGAAGAACTGGGGTGCTGTTAGTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp CAGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCTGGAGGAAGGGAGGCTaGGGGCCGCAAGGCATCAAT +
Preference number: 4 (lower is better)
Translates to: QELVDSKDSKLGNGCPLFWRKGG*GPQGIN
Trigger: ATTGATGCCTTGCGGCCCCCAGCCTCCCTTCCTCCA...GAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR TCA 90 bp GTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCTACCTTGCATACTTTAAGCACCCTGAGCCCCTaGGCCTACCCACTGCAGGTC +
Preference number: 4 (lower is better)
Translates to: VRIVNLGMAAPCSTLHTLSTLSP*AYPLQV
Trigger: GACCTGCAGTGGGTAGGCTCAGGGGCTCAGGGTGCT...TAAAGTATGCAAGGTAGAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR TCA 90 bp ATTTATGGAGCTGGGCAGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATAGCACCCTGAGCCCCTaGGCCTACCCACTGCAGGTC +
Preference number: 4 (lower is better)
Translates to: IYGAGQELVDSKDSKLGNSTLSP*AYPLQV
Trigger: GACCTGCAGTGGGTAGGCTCAGGGGCTCAGGGTGCT...ATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTGCCCAGCTCCATAAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR TCA 90 bp GTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTCTGGCCCAAAGCCAGGGTGGAAGTGCCAAAATCTaGGATCTTCACCACATCGTC +
Preference number: 4 (lower is better)
Translates to: VLQPEPSHAVSRLAQSQGGSAKI*DLHHIV
Trigger: GACGATGTGGTGAAGATCTCAGATTTTGGCACTTCC...ACCCTGGCTTTGGGCCAGACGACTAACAGCATGTGATGGCTCAGGCTGAAGAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR TCA 90 bp GGCACCAAGATAACAGTGGGGACTAACAGCACCCCAGTTCTTCAGCCTGAGCCAACACAGGTTCATTTCTaGTCACTTCAGGAGCCATCC +
Preference number: 4 (lower is better)
Translates to: GTKITVGTNSTPVLQPEPTQVHF*SLQEPS
Trigger: GGATGGCTCCTGAAGTGATCAGAAATGAACCTGTGT...TGGCTCAGGCTGAAGAACTGGGGTGCTGTTAGTCCCCACTGTTATCTTGGTGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR TCA 90 bp GTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTCTGGCCCAAAGCCAGGGTCAAGATCTGTCGGAATaGTGGGCGATTTCGTGGTTT +
Preference number: 4 (lower is better)
Translates to: VLQPEPSHAVSRLAQSQGQDLSE*WAISWF
Trigger: AAACCACGAAATCGCCCATCATTCCGACAGATCTTG...ACCCTGGCTTTGGGCCAGACGACTAACAGCATGTGATGGCTCAGGCTGAAGAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR TCA 90 bp GTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTCTGGCCCAAAGCCAGGGTGCAACGACTCTGTCTTaGGAATATCTGGCCTTTTGC +
Preference number: 4 (lower is better)
Translates to: VLQPEPSHAVSRLAQSQGATTLS*EYLAFC
Trigger: GCAAAAGGCCAGATATTCTCAAGACAGAGTCGTTGC...ACCCTGGCTTTGGGCCAGACGACTAACAGCATGTGATGGCTCAGGCTGAAGAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp GTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTCTGGCCCAAAGCCAGGGTCTGTGGAGTAGGCTTTaGCAATCATTGTCCAGACAG +
Preference number: 4 (lower is better)
Translates to: VLQPEPSHAVSRLAQSQGLWSRL*QSLSRQ
Trigger: CTGTCTGGACAATGATTGGCAAAGCCTACTCCACAG...ACCCTGGCTTTGGGCCAGACGACTAACAGCATGTGATGGCTCAGGCTGAAGAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp GGCACCAAGATAACAGTGGGGACTAACAGCACCCCAGTTCTTCAGCCTGAGCCATTCTTCCCGCCACTCTaGCTGGGACTTAAAGTAAGT +
Preference number: 4 (lower is better)
Translates to: GTKITVGTNSTPVLQPEPFFPPL*LGLKVS
Trigger: ACTTACTTTAAGTCCCAGGCAGAGTGGCGGGAAGAA...TGGCTCAGGCTGAAGAACTGGGGTGCTGTTAGTCCCCACTGTTATCTTGGTGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp GTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTCTGGCCCAAAGCCAGGGTTTCTTCCCGCCACTCTaGCTGGGACTTAAAGTAAGT +
Preference number: 4 (lower is better)
Translates to: VLQPEPSHAVSRLAQSQGFFPPL*LGLKVS
Trigger: ACTTACTTTAAGTCCCAGGCAGAGTGGCGGGAAGAA...ACCCTGGCTTTGGGCCAGACGACTAACAGCATGTGATGGCTCAGGCTGAAGAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp ATGGATGTCAGTTGGCTCTTTGTGAAGTTAAGCTTGTGGTGTGGACCTGAGACAGTTTCCTCCCCGGCCTaGAGTCCCTTCCCTTCCAGT +
Preference number: 4 (lower is better)
Translates to: MDVSWLFVKLSLWCGPETVSSPA*SPFPSS
Trigger: ACTGGAAGGGAAGGGACTGCAGGCCGGGGAGGAAAC...TGTCTCAGGTCCACACCACAAGCTTAACTTCACAAAGAGCCAACTGACATCCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
CDS-3UTR CCA 90 bp ATTTATGGAGCTGGGCAGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATCCCAGTGGCTCCCCCTaGCCCACCTGTATCCTGCTC +
Preference number: 4 (lower is better)
Translates to: IYGAGQELVDSKDSKLGNPSGSP*PTCILL
Trigger: GAGCAGGATACAGGTGGGCCAGGGGGAGCCACTGGG...ATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTGCCCAGCTCCATAAAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp GTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTCTGGCCCAAAGCCAGGGTCTGCAAAGGACATCTTaGTGCTCTTGTCACTCAGCT +
Preference number: 4 (lower is better)
Translates to: VLQPEPSHAVSRLAQSQGLQRTS*CSCHSA
Trigger: AGCTGAGTGACAAGAGCACCAAGATGTCCTTTGCAG...ACCCTGGCTTTGGGCCAGACGACTAACAGCATGTGATGGCTCAGGCTGAAGAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp CAGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCCAGGCGAATCTGGGCTaGTGGAACCAGGAGCTGATC +
Preference number: 4 (lower is better)
Translates to: QELVDSKDSKLGNGCPLFQANLG*WNQELI
Trigger: GATCAGCTCCTGGTTCCACCAGCCCAGATTCGCCTG...GAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp GTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCTACCTTGCATACTTTAGCGGGGGTCAAGTGCTaGGACCCAGCCCGGTTTCCT +
Preference number: 4 (lower is better)
Translates to: VRIVNLGMAAPCSTLHTLAGVKC*DPARFP
Trigger: AGGAAACCGGGCTGGGTCCCAGCACTTGACCCCCGC...TAAAGTATGCAAGGTAGAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp CTACCTGCCCCTCCAGTGTTCAGGGATAGACAGTATAGAGACAAGCCTGGCTTTTTCTGGTGTGCCACTTaGGGAAGGCTCACTAGCTGT +
Preference number: 4 (lower is better)
Translates to: LPAPPVFRDRQYRDKPGFFWCAT*GRLTSC
Trigger: ACAGCTAGTGAGCCTTCCCCAAGTGGCACACCAGAA...AAAGCCAGGCTTGTCTCTATACTGTCTATCCCTGAACACTGGAGGGGCAGGTAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp GACAAGCCTGGCTTTTCTATTGCCTACTTGCTTGTTCAACATAAGGAATGGGGTGGGCCCTGGCCATCCTaGTGTTGCATGGGCAAGGAG +
Preference number: 4 (lower is better)
Translates to: DKPGFSIAYLLVQHKEWGGPWPS*CCMGKE
Trigger: CTCCTTGCCCATGCAACACCAGGATGGCCAGGGCCC...ACCCCATTCCTTATGTTGAACAAGCAAGTAGGCAATAGAAAAGCCAGGCTTGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp CAGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCTCAGGATTGGGGCCCTaGCCATCCTGGTGTTGCATG +
Preference number: 4 (lower is better)
Translates to: QELVDSKDSKLGNGCPLFSGLGP*PSWCCM
Trigger: CATGCAACACCAGGATGGCCAGGGCCCCAATCCTGA...GAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR TCA 90 bp GGCACCAAGATAACAGTGGGGACTAACAGCACCCCAGTTCTTCAGCCTGAGCCAACCCCAGATGATGGCTaGGGAATCTACATCTTTGTA +
Preference number: 4 (lower is better)
Translates to: GTKITVGTNSTPVLQPEPTPDDG*GIYIFV
Trigger: TACAAAGATGTAGATTCCTCAGCCATCATCTGGGGT...TGGCTCAGGCTGAAGAACTGGGGTGCTGTTAGTCCCCACTGTTATCTTGGTGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR TCA 90 bp GACAAGCCTGGCTTTTCTATTGCCTACTTGCTTGTTCAACATAAGGAATGGGGTTGTCCAGGGCATGTCTaGGCTCCTCCCTTCTCCGCA +
Preference number: 4 (lower is better)
Translates to: DKPGFSIAYLLVQHKEWGCPGHV*APPFSA
Trigger: TGCGGAGAAGGGAGGAGCTCAGACATGCCCTGGACA...ACCCCATTCCTTATGTTGAACAAGCAAGTAGGCAATAGAAAAGCCAGGCTTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp CAGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCGGCCCACCTGTATCCTaGTCATGTAGCTGGAGGACA +
Preference number: 4 (lower is better)
Translates to: QELVDSKDSKLGNGCPLFGPPVS*SCSWRT
Trigger: TGTCCTCCAGCTACATGAGCAGGATACAGGTGGGCC...GAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp GGGACTAACAGCACCCCAGTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTGTGATGATGTTGGGGTaGTTCAGCTTTCGAAGATGC +
Preference number: 4 (lower is better)
Translates to: GTNSTPVLQPEPSHAVSRVMMLG*FSFRRC
Trigger: GCATCTTCGAAAGCTGAAGCACCCCAACATCATCAC...ACGACTAACAGCATGTGATGGCTCAGGCTGAAGAACTGGGGTGCTGTTAGTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp CAGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCGGTGCAGGTAATTCATaGCACCAGCGATGCCCATGG +
Preference number: 4 (lower is better)
Translates to: QELVDSKDSKLGNGCPLFGAGNS*HQRCPW
Trigger: CCATGGGCATCGCTGGTGGCATGAATTACCTGCACC...GAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp CAGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCTCCTCTTCTAGGCGGTaGAGACAGGTCCCTTCTGAC +
Preference number: 4 (lower is better)
Translates to: QELVDSKDSKLGNGCPLFSSSRR*RQVPSD
Trigger: GTCAGAAGGGACCTGTCTGCACCGCCTAGAAGAGGA...GAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp GACAAGCCTGGCTTTTCTATTGCCTACTTGCTTGTTCAACATAAGGAATGGGGTTTCGGTGACGGGTCTTaGCACGCCGACTCCTTCCAG +
Preference number: 4 (lower is better)
Translates to: DKPGFSIAYLLVQHKEWGFGDGS*HADSFQ
Trigger: CTGGAAGGAGTCGGCGTGGCAAGACCCGTCACCGAA...ACCCCATTCCTTATGTTGAACAAGCAAGTAGGCAATAGAAAAGCCAGGCTTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp GACAAGCCTGGCTTTTCTATTGCCTACTTGCTTGTTCAACATAAGGAATGGGGTATGGGGTGGCAAAGCTaGACGAAGCCCAGGCAGGTC +
Preference number: 4 (lower is better)
Translates to: DKPGFSIAYLLVQHKEWGMGWQS*TKPRQV
Trigger: GACCTGCCTGGGCTTCGTGCAGCTTTGCCACCCCAT...ACCCCATTCCTTATGTTGAACAAGCAAGTAGGCAATAGAAAAGCCAGGCTTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp GGCACCAAGATAACAGTGGGGACTAACAGCACCCCAGTTCTTCAGCCTGAGCCATCCTGCTCATGTAGCTaGAGGACACTATTGGCAAAA +
Preference number: 4 (lower is better)
Translates to: GTKITVGTNSTPVLQPEPSCSCS*RTLLAK
Trigger: TTTTGCCAATAGTGTCCTCCAGCTACATGAGCAGGA...TGGCTCAGGCTGAAGAACTGGGGTGCTGTTAGTCCCCACTGTTATCTTGGTGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp TTGCTGCTACCCAGTGATAATGAAATGTACACTGAATGCCTTTCTCTCAAAGCTCCCAGTGGCTCCCCCTaGCCCACCTGTATCCTGCTC +
Preference number: 4 (lower is better)
Translates to: LLLPSDNEMYTECLSLKAPSGSP*PTCILL
Trigger: GAGCAGGATACAGGTGGGCCAGGGGGAGCCACTGGG...AGCTTTGAGAGAAAGGCATTCAGTGTACATTTCATTATCACTGGGTAGCAGCAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
CDS-3UTR CCA 90 bp GGGACTAACAGCACCCCAGTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTGACTTCAGGTCTCTGTaGATAATCTTGTGCAGGTGC +
Preference number: 4 (lower is better)
Translates to: GTNSTPVLQPEPSHAVSRDFRSL*IILCRC
Trigger: GCACCTGCACAAGATTATCCACAGAGACCTGAAGTC...ACGACTAACAGCATGTGATGGCTCAGGCTGAAGAACTGGGGTGCTGTTAGTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp CAGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCGAGGGTACAGGCAGGTaGAGACTGTTGCTTCCCACA +
Preference number: 4 (lower is better)
Translates to: QELVDSKDSKLGNGCPLFEGTGR*RLLLPT
Trigger: TGTGGGAAGCAACAGTCTCCACCTGCCTGTACCCTC...GAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp GGGACTAACAGCACCCCAGTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTCCATGTACAGGTTGTTaGCTCTCTCCAACTTCCGTT +
Preference number: 4 (lower is better)
Translates to: GTNSTPVLQPEPSHAVSRPCTGC*LSPTSV
Trigger: AACGGAAGTTGGAGAGAGCCAACAACCTGTACATGG...ACGACTAACAGCATGTGATGGCTCAGGCTGAAGAACTGGGGTGCTGTTAGTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp CTTCTAGTTTCCGGGATATACCCCTTCCCCTGTGGTATTTGTACATTTAGTGCAAGCTGCCCTTGGCACTaGCCTTTCGGTGACGGGTCT +
Preference number: 4 (lower is better)
Translates to: LLVSGIYPFPCGICTFSASCPWH*PFGDGS
Trigger: AGACCCGTCACCGAAAGGCCAGTGCCAAGGGCAGCT...TGCACTAAATGTACAAATACCACAGGGGAAGGGGTATATCCCGGAAACTAGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
CDS-3UTR CCA 90 bp GACAAGCCTGGCTTTTCTATTGCCTACTTGCTTGTTCAACATAAGGAATGGGGTTCCAGGCTCATGGGGTaGCAAAGCTGCACGAAGCCC +
Preference number: 4 (lower is better)
Translates to: DKPGFSIAYLLVQHKEWGSRLMG*QSCTKP
Trigger: GGGCTTCGTGCAGCTTTGCCACCCCATGAGCCTGGA...ACCCCATTCCTTATGTTGAACAAGCAAGTAGGCAATAGAAAAGCCAGGCTTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp ATTTATGGAGCTGGGCAGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATGGGCCCTGGCCATCCTaGTGTTGCATGGGCAAGGAG +
Preference number: 4 (lower is better)
Translates to: IYGAGQELVDSKDSKLGNGPWPS*CCMGKE
Trigger: CTCCTTGCCCATGCAACACCAGGATGGCCAGGGCCC...ATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTGCCCAGCTCCATAAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp GGCACCAAGATAACAGTGGGGACTAACAGCACCCCAGTTCTTCAGCCTGAGCCAAGGCATCAATGCTGTTaGAGTTGTCCAATTCAGTGC +
Preference number: 4 (lower is better)
Translates to: GTKITVGTNSTPVLQPEPRHQCC*SCPIQC
Trigger: GCACTGAATTGGACAACTCCAACAGCATTGATGCCT...TGGCTCAGGCTGAAGAACTGGGGTGCTGTTAGTCCCCACTGTTATCTTGGTGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp GTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTCTGGCCCAAAGCCAGGGTAGGCATCAATGCTGTTaGAGTTGTCCAATTCAGTGC +
Preference number: 4 (lower is better)
Translates to: VLQPEPSHAVSRLAQSQGRHQCC*SCPIQC
Trigger: GCACTGAATTGGACAACTCCAACAGCATTGATGCCT...ACCCTGGCTTTGGGCCAGACGACTAACAGCATGTGATGGCTCAGGCTGAAGAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR TCA 90 bp GGGACTAACAGCACCCCAGTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTTCATATAGCTGTCCTTaGGCGCAGAATTCCATAAGG +
Preference number: 4 (lower is better)
Translates to: GTNSTPVLQPEPSHAVSRSYSCP*AQNSIR
Trigger: CCTTATGGAATTCTGCGCTCAAGGACAGCTATATGA...ACGACTAACAGCATGTGATGGCTCAGGCTGAAGAACTGGGGTGCTGTTAGTCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR TCA 90 bp CTACCTGCCCCTCCAGTGTTCAGGGATAGACAGTATAGAGACAAGCCTGGCTTTCCACATCGTCGTATGTaGTTAGCATGTTGGGTGACT +
Preference number: 4 (lower is better)
Translates to: LPAPPVFRDRQYRDKPGFPHRRM*LACWVT
Trigger: AGTCACCCAACATGCTAATCACATACGACGATGTGG...AAAGCCAGGCTTGTCTCTATACTGTCTATCCCTGAACACTGGAGGGGCAGGTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR TCA 90 bp CTACCTGCCCCTCCAGTGTTCAGGGATAGACAGTATAGAGACAAGCCTGGCTTTGCAACGACTCTGTCTTaGGAATATCTGGCCTTTTGC +
Preference number: 4 (lower is better)
Translates to: LPAPPVFRDRQYRDKPGFATTLS*EYLAFC
Trigger: GCAAAAGGCCAGATATTCTCAAGACAGAGTCGTTGC...AAAGCCAGGCTTGTCTCTATACTGTCTATCCCTGAACACTGGAGGGGCAGGTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp ATGGATGTCAGTTGGCTCTTTGTGAAGTTAAGCTTGTGGTGTGGACCTGAGACACTTCAAGGAAGCCACTaGCACTCTGGCACTGCAGAC +
Preference number: 4 (lower is better)
Translates to: MDVSWLFVKLSLWCGPETLQGSH*HSGTAD
Trigger: GTCTGCAGTGCCAGAGTGGCAGTGGCTTCCTTGAAG...TGTCTCAGGTCCACACCACAAGCTTAACTTCACAAAGAGCCAACTGACATCCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
CDS-3UTR GCA 90 bp ATGGATGTCAGTTGGCTCTTTGTGAAGTTAAGCTTGTGGTGTGGACCTGAGACATCATGCCACCAGCGATaGCCATGGACCAGTCAACCA +
Preference number: 4 (lower is better)
Translates to: MDVSWLFVKLSLWCGPETSCHQR*PWTSQP
Trigger: TGGTTGACTGGTCCATGGGCATCGCTGGTGGCATGA...TGTCTCAGGTCCACACCACAAGCTTAACTTCACAAAGAGCCAACTGACATCCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
CDS-3UTR GCA 90 bp GGCACCAAGATAACAGTGGGGACTAACAGCACCCCAGTTCTTCAGCCTGAGCCATCTTTGAGTTCTAGTTaGAGCATGAGGGCATTCAGT +
Preference number: 4 (lower is better)
Translates to: GTKITVGTNSTPVLQPEPSLSSS*SMRAFS
Trigger: ACTGAATGCCCTCATGCTGCAACTAGAACTCAAAGA...TGGCTCAGGCTGAAGAACTGGGGTGCTGTTAGTCCCCACTGTTATCTTGGTGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp GTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCTACCTTGCATACTTTAGTTTCCTCCCCGGCCTaGAGTCCCTTCCCTTCCAGT +
Preference number: 4 (lower is better)
Translates to: VRIVNLGMAAPCSTLHTLVSSPA*SPFPSS
Trigger: ACTGGAAGGGAAGGGACTGCAGGCCGGGGAGGAAAC...TAAAGTATGCAAGGTAGAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp GACAAGCCTGGCTTTTCTATTGCCTACTTGCTTGTTCAACATAAGGAATGGGGTTGGCCATCCTGGTGTTaGATGGGCAAGGAGCTGGCT +
Preference number: 4 (lower is better)
Translates to: DKPGFSIAYLLVQHKEWGWPSWC*MGKELA
Trigger: AGCCAGCTCCTTGCCCATGCAACACCAGGATGGCCA...ACCCCATTCCTTATGTTGAACAAGCAAGTAGGCAATAGAAAAGCCAGGCTTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp GGCACCAAGATAACAGTGGGGACTAACAGCACCCCAGTTCTTCAGCCTGAGCCAAGTTGTCCAATTCAGTaGTGTCACAGTCTGAGTCTT +
Preference number: 4 (lower is better)
Translates to: GTKITVGTNSTPVLQPEPSCPIQ*CHSLSL
Trigger: AAGACTCAGACTGTGACAGCACTGAATTGGACAACT...TGGCTCAGGCTGAAGAACTGGGGTGCTGTTAGTCCCCACTGTTATCTTGGTGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp CTACCTGCCCCTCCAGTGTTCAGGGATAGACAGTATAGAGACAAGCCTGGCTTTGCCGCAAGGCATCAATaGTGTTGGAGTTGTCCAATT +
Preference number: 4 (lower is better)
Translates to: LPAPPVFRDRQYRDKPGFAARHQ*CWSCPI
Trigger: AATTGGACAACTCCAACAGCATTGATGCCTTGCGGC...AAAGCCAGGCTTGTCTCTATACTGTCTATCCCTGAACACTGGAGGGGCAGGTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp CAGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCGAAGTACACATTGGGTaGGCGTCAGGTCTTTCTCGG +
Preference number: 4 (lower is better)
Translates to: QELVDSKDSKLGNGCPLFEVHIG*ASGLSR
Trigger: CCGAGAAAGACCTGACGCCCACCCAATGTGTACTTC...GAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp GACAAGCCTGGCTTTTCTATTGCCTACTTGCTTGTTCAACATAAGGAATGGGGTGCTACCTCCTCCCCGTaGAAGCGTCCCAGGAAAACA +
Preference number: 4 (lower is better)
Translates to: DKPGFSIAYLLVQHKEWGATSSP*KRPRKT
Trigger: TGTTTTCCTGGGACGCTTCCACGGGGAGGAGGTAGC...ACCCCATTCCTTATGTTGAACAAGCAAGTAGGCAATAGAAAAGCCAGGCTTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp GACAAGCCTGGCTTTTCTATTGCCTACTTGCTTGTTCAACATAAGGAATGGGGTAACCATCTGGGCAGCTaGAGGGTACAGGCAGGTGGA +
Preference number: 4 (lower is better)
Translates to: DKPGFSIAYLLVQHKEWGNHLGS*RVQAGG
Trigger: TCCACCTGCCTGTACCCTCCAGCTGCCCAGATGGTT...ACCCCATTCCTTATGTTGAACAAGCAAGTAGGCAATAGAAAAGCCAGGCTTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp CTACCTGCCCCTCCAGTGTTCAGGGATAGACAGTATAGAGACAAGCCTGGCTTTCCATGTACAGGTTGTTaGCTCTCTCCAACTTCCGTT +
Preference number: 4 (lower is better)
Translates to: LPAPPVFRDRQYRDKPGFPCTGC*LSPTSV
Trigger: AACGGAAGTTGGAGAGAGCCAACAACCTGTACATGG...AAAGCCAGGCTTGTCTCTATACTGTCTATCCCTGAACACTGGAGGGGCAGGTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp GTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCTACCTTGCATACTTTAAGCTGCCCTTGGCACTaGCCTTTCGGTGACGGGTCT +
Preference number: 4 (lower is better)
Translates to: VRIVNLGMAAPCSTLHTLSCPWH*PFGDGS
Trigger: AGACCCGTCACCGAAAGGCCAGTGCCAAGGGCAGCT...TAAAGTATGCAAGGTAGAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp GAGAACACCTCAGGAACCTTGGTTGTAGTGGTGTTACATAAACAACCTTGTGCAGCGAATCTGGGCTGGTaGAACCAGGAGCTGATCCCT +
Preference number: 4 (lower is better)
Translates to: ENTSGTLVVVVLHKQPCAANLGW*NQELIP
Trigger: AGGGATCAGCTCCTGGTTCCACCAGCCCAGATTCGC...TGCACAAGGTTGTTTATGTAACACCACTACAACCAAGGTTCCTGAGGTGTTCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
CDS-3UTR CCA 90 bp CTTCTAGTTTCCGGGATATACCCCTTCCCCTGTGGTATTTGTACATTTAGTGCATTCTCCAGGCCCTACTaGTGGAGGGGGTTCCCCTTT +
Preference number: 4 (lower is better)
Translates to: LLVSGIYPFPCGICTFSAFSRPY*WRGFPF
Trigger: AAAGGGGAACCCCCTCCACCAGTAGGGCCTGGAGAA...TGCACTAAATGTACAAATACCACAGGGGAAGGGGTATATCCCGGAAACTAGAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
CDS-3UTR CCA 90 bp ATTTATGGAGCTGGGCAGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATTGGAGGAAGGGAGGCTaGGGGCCGCAAGGCATCAAT +
Preference number: 4 (lower is better)
Translates to: IYGAGQELVDSKDSKLGNWRKGG*GPQGIN
Trigger: ATTGATGCCTTGCGGCCCCCAGCCTCCCTTCCTCCA...ATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTGCCCAGCTCCATAAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR TCA 90 bp CTACCTGCCCCTCCAGTGTTCAGGGATAGACAGTATAGAGACAAGCCTGGCTTTACCCCAGATGATGGCTaGGGAATCTACATCTTTGTA +
Preference number: 4 (lower is better)
Translates to: LPAPPVFRDRQYRDKPGFTPDDG*GIYIFV
Trigger: TACAAAGATGTAGATTCCTCAGCCATCATCTGGGGT...AAAGCCAGGCTTGTCTCTATACTGTCTATCCCTGAACACTGGAGGGGCAGGTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp CTTCTAGTTTCCGGGATATACCCCTTCCCCTGTGGTATTTGTACATTTAGTGCAGGCCCACCTGTATCCTaGTCATGTAGCTGGAGGACA +
Preference number: 4 (lower is better)
Translates to: LLVSGIYPFPCGICTFSAGPPVS*SCSWRT
Trigger: TGTCCTCCAGCTACATGAGCAGGATACAGGTGGGCC...TGCACTAAATGTACAAATACCACAGGGGAAGGGGTATATCCCGGAAACTAGAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
CDS-3UTR GCA 90 bp GACAAGCCTGGCTTTTCTATTGCCTACTTGCTTGTTCAACATAAGGAATGGGGTCCTGAGCCTACCCACTaGAGGTCCAGGATTTCCTCA +
Preference number: 4 (lower is better)
Translates to: DKPGFSIAYLLVQHKEWGPEPTH*RSRISS
Trigger: TGAGGAAATCCTGGACCTGCAGTGGGTAGGCTCAGG...ACCCCATTCCTTATGTTGAACAAGCAAGTAGGCAATAGAAAAGCCAGGCTTGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp CAGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCCCAGGCTACTGTTCCTaGAAAGGACATCTTGGTGCT +
Preference number: 4 (lower is better)
Translates to: QELVDSKDSKLGNGCPLFPGYCS*KGHLGA
Trigger: AGCACCAAGATGTCCTTTGCAGGAACAGTAGCCTGG...GAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp TTGCTGCTACCCAGTGATAATGAAATGTACACTGAATGCCTTTCTCTCAAAGCTGCAGGTCTCCACAGCTaGCCTTGGCACTGGCCTTTC +
Preference number: 4 (lower is better)
Translates to: LLLPSDNEMYTECLSLKAAGLHS*PWHWPF
Trigger: GAAAGGCCAGTGCCAAGGGCAGCTGTGGAGACCTGC...AGCTTTGAGAGAAAGGCATTCAGTGTACATTTCATTATCACTGGGTAGCAGCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
CDS-3UTR GCA 90 bp TTTCCGGGATATACCCCTTCCCCTGTGGTATTTGTACATTTAGTGCACATGGTATGCCAACTTCTGGTGTaGCACTTGGGGAAGGCTCAC +
Preference number: 4 (lower is better)
Translates to: FPGYTPSPVVFVHLVHMVCQLLV*HLGKAH
Trigger: GTGAGCCTTCCCCAAGTGGCACACCAGAAGTTGGCA...TACCATGTGCACTAAATGTACAAATACCACAGGGGAAGGGGTATATCCCGGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
CDS-3UTR GCA 90 bp CAGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCCATCAGTGTTGGTACTaGCAACTTCTGGTGTGCCAC +
Preference number: 4 (lower is better)
Translates to: QELVDSKDSKLGNGCPLFHQCWY*QLLVCH
Trigger: GTGGCACACCAGAAGTTGGCAGTACCAACACTGATG...GAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp GTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCTACCTTGCATACTTTATGGCCATCCTGGTGTTaGATGGGCAAGGAGCTGGCT +
Preference number: 4 (lower is better)
Translates to: VRIVNLGMAAPCSTLHTLWPSWC*MGKELA
Trigger: AGCCAGCTCCTTGCCCATGCAACACCAGGATGGCCA...TAAAGTATGCAAGGTAGAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp GTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCTACCTTGCATACTTTAATTGGCAAAAGGCTCTaGGGGAGGCTCTCCACCTGG +
Preference number: 4 (lower is better)
Translates to: VRIVNLGMAAPCSTLHTLIGKRL*GRLSTW
Trigger: CCAGGTGGAGAGCCTCCCCCAGAGCCTTTTGCCAAT...TAAAGTATGCAAGGTAGAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp GACAAGCCTGGCTTTTCTATTGCCTACTTGCTTGTTCAACATAAGGAATGGGGTGAGGGTACAGGCAGGTaGAGACTGTTGCTTCCCACA +
Preference number: 4 (lower is better)
Translates to: DKPGFSIAYLLVQHKEWGEGTGR*RLLLPT
Trigger: TGTGGGAAGCAACAGTCTCCACCTGCCTGTACCCTC...ACCCCATTCCTTATGTTGAACAAGCAAGTAGGCAATAGAAAAGCCAGGCTTGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp ACCCCTTCCCCTGTGGTATTTGTACATTTAGTGCACATGGTATTAAGCCAAACAAACCATCTGGGCAGCTaGAGGGTACAGGCAGGTGGA +
Preference number: 4 (lower is better)
Translates to: TPSPVVFVHLVHMVLSQTNHLGS*RVQAGG
Trigger: TCCACCTGCCTGTACCCTCCAGCTGCCCAGATGGTT...TGTTTGGCTTAATACCATGTGCACTAAATGTACAAATACCACAGGGGAAGGGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
CDS-3UTR CCA 90 bp CTACCTGCCCCTCCAGTGTTCAGGGATAGACAGTATAGAGACAAGCCTGGCTTTAATTTTAAAACCATCTaGGCAGCTGGAGGGTACAGG +
Preference number: 4 (lower is better)
Translates to: LPAPPVFRDRQYRDKPGFNFKTI*AAGGYR
Trigger: CCTGTACCCTCCAGCTGCCCAGATGGTTTTAAAATT...AAAGCCAGGCTTGTCTCTATACTGTCTATCCCTGAACACTGGAGGGGCAGGTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp ATTTATGGAGCTGGGCAGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATGCGAATCTGGGCTGGTaGAACCAGGAGCTGATCCCT +
Preference number: 4 (lower is better)
Translates to: IYGAGQELVDSKDSKLGNANLGW*NQELIP
Trigger: AGGGATCAGCTCCTGGTTCCACCAGCCCAGATTCGC...ATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTGCCCAGCTCCATAAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp GTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCTACCTTGCATACTTTACAGGCGAATCTGGGCTaGTGGAACCAGGAGCTGATC +
Preference number: 4 (lower is better)
Translates to: VRIVNLGMAAPCSTLHTLQANLG*WNQELI
Trigger: GATCAGCTCCTGGTTCCACCAGCCCAGATTCGCCTG...TAAAGTATGCAAGGTAGAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp ATTTATGGAGCTGGGCAGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATCAGGCGAATCTGGGCTaGTGGAACCAGGAGCTGATC +
Preference number: 4 (lower is better)
Translates to: IYGAGQELVDSKDSKLGNQANLG*WNQELI
Trigger: GATCAGCTCCTGGTTCCACCAGCCCAGATTCGCCTG...ATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTGCCCAGCTCCATAAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp CTACCTGCCCCTCCAGTGTTCAGGGATAGACAGTATAGAGACAAGCCTGGCTTTATCAGATCGTTCATCTaGTCGCTCATCAGTGTTGGT +
Preference number: 4 (lower is better)
Translates to: LPAPPVFRDRQYRDKPGFIRSFI*SLISVG
Trigger: ACCAACACTGATGAGCGACCAGATGAACGATCTGAT...AAAGCCAGGCTTGTCTCTATACTGTCTATCCCTGAACACTGGAGGGGCAGGTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR TCA 90 bp CAGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCGGAAGTGCCAAAATCTaGGATCTTCACCACATCGTC +
Preference number: 4 (lower is better)
Translates to: QELVDSKDSKLGNGCPLFGSAKI*DLHHIV
Trigger: GACGATGTGGTGAAGATCTCAGATTTTGGCACTTCC...GAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR TCA 90 bp CTACCTGCCCCTCCAGTGTTCAGGGATAGACAGTATAGAGACAAGCCTGGCTTTCAGACAGGTCCCTTCTaGCTTAATCTTTTCAAAGTG +
Preference number: 4 (lower is better)
Translates to: LPAPPVFRDRQYRDKPGFQTGPF*LNLFKV
Trigger: CACTTTGAAAAGATTAAGTCAGAAGGGACCTGTCTG...AAAGCCAGGCTTGTCTCTATACTGTCTATCCCTGAACACTGGAGGGGCAGGTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR TCA 90 bp ACCCCTTCCCCTGTGGTATTTGTACATTTAGTGCACATGGTATTAAGCCAAACAAGTGCTGTCACAGTCTaGGTCTTCAGGATTGGGGCC +
Preference number: 4 (lower is better)
Translates to: TPSPVVFVHLVHMVLSQTSAVTV*VFRIGA
Trigger: GGCCCCAATCCTGAAGACTCAGACTGTGACAGCACT...TGTTTGGCTTAATACCATGTGCACTAAATGTACAAATACCACAGGGGAAGGGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
CDS-3UTR GCA 90 bp GACAAGCCTGGCTTTTCTATTGCCTACTTGCTTGTTCAACATAAGGAATGGGGTGGTCTTTCTCGGGGGTaGAGTCTGAAGTGTCTGGAT +
Preference number: 4 (lower is better)
Translates to: DKPGFSIAYLLVQHKEWGGLSRG*SLKCLD
Trigger: ATCCAGACACTTCAGACTGCACCCCCGAGAAAGACC...ACCCCATTCCTTATGTTGAACAAGCAAGTAGGCAATAGAAAAGCCAGGCTTGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp ACCCCTTCCCCTGTGGTATTTGTACATTTAGTGCACATGGTATTAAGCCAAACAGGTGCAGGTAATTCATaGCACCAGCGATGCCCATGG +
Preference number: 4 (lower is better)
Translates to: TPSPVVFVHLVHMVLSQTGAGNS*HQRCPW
Trigger: CCATGGGCATCGCTGGTGGCATGAATTACCTGCACC...TGTTTGGCTTAATACCATGTGCACTAAATGTACAAATACCACAGGGGAAGGGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
CDS-3UTR GCA 90 bp CTACCTGCCCCTCCAGTGTTCAGGGATAGACAGTATAGAGACAAGCCTGGCTTTTCAGCTCCTTGGAAGTaGCAAAATCTGAGATCTTCA +
Preference number: 4 (lower is better)
Translates to: LPAPPVFRDRQYRDKPGFSAPWK*QNLRSS
Trigger: TGAAGATCTCAGATTTTGGCACTTCCAAGGAGCTGA...AAAGCCAGGCTTGTCTCTATACTGTCTATCCCTGAACACTGGAGGGGCAGGTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp CAGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCTTCTTCCCGCCACTCTaGCTGGGACTTAAAGTAAGT +
Preference number: 4 (lower is better)
Translates to: QELVDSKDSKLGNGCPLFFFPPL*LGLKVS
Trigger: ACTTACTTTAAGTCCCAGGCAGAGTGGCGGGAAGAA...GAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp GTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCTACCTTGCATACTTTATCCTCTTCTAGGCGGTaGAGACAGGTCCCTTCTGAC +
Preference number: 4 (lower is better)
Translates to: VRIVNLGMAAPCSTLHTLSSSRR*RQVPSD
Trigger: GTCAGAAGGGACCTGTCTGCACCGCCTAGAAGAGGA...TAAAGTATGCAAGGTAGAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp AAATCCAAGTTGAAACCATGTATTATACCACTCTACTCATTCACCAAGAAAACCGCAGCGGGGGTCAAGTaGTGGGACCCAGCCCGGTTT +
Preference number: 4 (lower is better)
Translates to: KSKLKPCIIPLYSFTKKTAAGVK*WDPARF
Trigger: AAACCGGGCTGGGTCCCAGCACTTGACCCCCGCTGC...GGTTTTCTTGGTGAATGAGTAGAGTGGTATAATACATGGTTTCAACTTGGATTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp CAGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCGCCGCAAGGCATCAATaGTGTTGGAGTTGTCCAATT +
Preference number: 4 (lower is better)
Translates to: QELVDSKDSKLGNGCPLFAARHQ*CWSCPI
Trigger: AATTGGACAACTCCAACAGCATTGATGCCTTGCGGC...GAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp CATTTAGTGCACATGGTATTAAGCCAAACATCACAAATGGATGTCAGTTGGCTCGCTACCTCCTCCCCGTaGAAGCGTCCCAGGAAAACA +
Preference number: 4 (lower is better)
Translates to: HLVHMVLSQTSQMDVSWLATSSP*KRPRKT
Trigger: TGTTTTCCTGGGACGCTTCCACGGGGAGGAGGTAGC...GAGCCAACTGACATCCATTTGTGATGTTTGGCTTAATACCATGTGCACTAAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
CDS-3UTR CCA 90 bp GTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCTACCTTGCATACTTTACGGAGTAGAAGGTCATaGTGGAGTCCACGGAGAGCA +
Preference number: 4 (lower is better)
Translates to: VRIVNLGMAAPCSTLHTLRSRRS*WSPRRA
Trigger: TGCTCTCCGTGGACTCCACCATGACCTTCTACTCCG...TAAAGTATGCAAGGTAGAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp GACAAGCCTGGCTTTTCTATTGCCTACTTGCTTGTTCAACATAAGGAATGGGGTTTCTGGTGTGCCACTTaGGGAAGGCTCACTAGCTGT +
Preference number: 4 (lower is better)
Translates to: DKPGFSIAYLLVQHKEWGFWCAT*GRLTSC
Trigger: ACAGCTAGTGAGCCTTCCCCAAGTGGCACACCAGAA...ACCCCATTCCTTATGTTGAACAAGCAAGTAGGCAATAGAAAAGCCAGGCTTGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR TCA 90 bp CAGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCTCATATAGCTGTCCTTaGGCGCAGAATTCCATAAGG +
Preference number: 4 (lower is better)
Translates to: QELVDSKDSKLGNGCPLFSYSCP*AQNSIR
Trigger: CCTTATGGAATTCTGCGCTCAAGGACAGCTATATGA...GAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp ATTTATGGAGCTGGGCAGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATGGTCTTTCTCGGGGGTaGAGTCTGAAGTGTCTGGAT +
Preference number: 4 (lower is better)
Translates to: IYGAGQELVDSKDSKLGNGLSRG*SLKCLD
Trigger: ATCCAGACACTTCAGACTGCACCCCCGAGAAAGACC...ATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTGCCCAGCTCCATAAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp AGTGACTTACGTGGGTGTTGTTCCTGTCTGATGTTATTTTTATACCTTTTAACTGGTCCTCCTCCACCCTaGCCACCGAGAGGCACAACA +
Preference number: 4 (lower is better)
Translates to: SDLRGCCSCLMLFLYLLTGPPPP*PPRGTT
Trigger: TGTTGTGCCTCTCGGTGGGCAGGGTGGAGGAGGACC...AGTTAAAAGGTATAAAAATAACATCAGACAGGAACAACACCCACGTAAGTCACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023812.10
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp AAATCCAAGTTGAAACCATGTATTATACCACTCTACTCATTCACCAAGAAAACCGGTCCTCCTCCACCCTaGCCACCGAGAGGCACAACA +
Preference number: 4 (lower is better)
Translates to: KSKLKPCIIPLYSFTKKTGPPPP*PPRGTT
Trigger: TGTTGTGCCTCTCGGTGGGCAGGGTGGAGGAGGACC...GGTTTTCTTGGTGAATGAGTAGAGTGGTATAATACATGGTTTCAACTTGGATTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp ATTTATGGAGCTGGGCAGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATGAGGCGATGTCCAGGTaGAGCAAGATCTGTCGGAAT +
Preference number: 4 (lower is better)
Translates to: IYGAGQELVDSKDSKLGNEAMSR*SKICRN
Trigger: ATTCCGACAGATCTTGCTGCACCTGGACATCGCCTC...ATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTGCCCAGCTCCATAAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp GTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTCTGGCCCAAAGCCAGGGTTTAATCTTTTCAAAGTaGAGTTTTACTTCTTCCCGC +
Preference number: 4 (lower is better)
Translates to: VLQPEPSHAVSRLAQSQGLIFSK*SFTSSR
Trigger: GCGGGAAGAAGTAAAACTGCACTTTGAAAAGATTAA...ACCCTGGCTTTGGGCCAGACGACTAACAGCATGTGATGGCTCAGGCTGAAGAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp GGCACCAAGATAACAGTGGGGACTAACAGCACCCCAGTTCTTCAGCCTGAGCCATTAATCTTTTCAAAGTaGAGTTTTACTTCTTCCCGC +
Preference number: 4 (lower is better)
Translates to: GTKITVGTNSTPVLQPEPLIFSK*SFTSSR
Trigger: GCGGGAAGAAGTAAAACTGCACTTTGAAAAGATTAA...TGGCTCAGGCTGAAGAACTGGGGTGCTGTTAGTCCCCACTGTTATCTTGGTGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp TTTCCGGGATATACCCCTTCCCCTGTGGTATTTGTACATTTAGTGCACATGGTATCTCGAAGTACACATTaGGTGGGCGTCAGGTCTTTC +
Preference number: 4 (lower is better)
Translates to: FPGYTPSPVVFVHLVHMVSRSTH*VGVRSF
Trigger: GAAAGACCTGACGCCCACCCAATGTGTACTTCGAGA...TACCATGTGCACTAAATGTACAAATACCACAGGGGAAGGGGTATATCCCGGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
CDS-3UTR CCA 90 bp TTGCTGCTACCCAGTGATAATGAAATGTACACTGAATGCCTTTCTCTCAAAGCTGGTACTGCCAACTTCTaGTGTGCCACTTGGGGAAGG +
Preference number: 4 (lower is better)
Translates to: LLLPSDNEMYTECLSLKAGTANF*CATWGR
Trigger: CCTTCCCCAAGTGGCACACCAGAAGTTGGCAGTACC...AGCTTTGAGAGAAAGGCATTCAGTGTACATTTCATTATCACTGGGTAGCAGCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
CDS-3UTR TCA 90 bp AAATCCAAGTTGAAACCATGTATTATACCACTCTACTCATTCACCAAGAAAACCTGTCCAGGGCATGTCTaGGCTCCTCCCTTCTCCGCA +
Preference number: 4 (lower is better)
Translates to: KSKLKPCIIPLYSFTKKTCPGHV*APPFSA
Trigger: TGCGGAGAAGGGAGGAGCTCAGACATGCCCTGGACA...GGTTTTCTTGGTGAATGAGTAGAGTGGTATAATACATGGTTTCAACTTGGATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp CTTCTAGTTTCCGGGATATACCCCTTCCCCTGTGGTATTTGTACATTTAGTGCACTGTGGAGTAGGCTTTaGCAATCATTGTCCAGACAG +
Preference number: 4 (lower is better)
Translates to: LLVSGIYPFPCGICTFSALWSRL*QSLSRQ
Trigger: CTGTCTGGACAATGATTGGCAAAGCCTACTCCACAG...TGCACTAAATGTACAAATACCACAGGGGAAGGGGTATATCCCGGAAACTAGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
CDS-3UTR GCA 90 bp AAATCCAAGTTGAAACCATGTATTATACCACTCTACTCATTCACCAAGAAAACCTTCGGTGACGGGTCTTaGCACGCCGACTCCTTCCAG +
Preference number: 4 (lower is better)
Translates to: KSKLKPCIIPLYSFTKKTFGDGS*HADSFQ
Trigger: CTGGAAGGAGTCGGCGTGGCAAGACCCGTCACCGAA...GGTTTTCTTGGTGAATGAGTAGAGTGGTATAATACATGGTTTCAACTTGGATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp AAATCCAAGTTGAAACCATGTATTATACCACTCTACTCATTCACCAAGAAAACCGCAGGTCTCCACAGCTaGCCTTGGCACTGGCCTTTC +
Preference number: 4 (lower is better)
Translates to: KSKLKPCIIPLYSFTKKTAGLHS*PWHWPF
Trigger: GAAAGGCCAGTGCCAAGGGCAGCTGTGGAGACCTGC...GGTTTTCTTGGTGAATGAGTAGAGTGGTATAATACATGGTTTCAACTTGGATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp ATTTATGGAGCTGGGCAGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATCATCAGTGTTGGTACTaGCAACTTCTGGTGTGCCAC +
Preference number: 4 (lower is better)
Translates to: IYGAGQELVDSKDSKLGNHQCWY*QLLVCH
Trigger: GTGGCACACCAGAAGTTGGCAGTACCAACACTGATG...ATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTGCCCAGCTCCATAAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp CAGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCAGTTGTCCAATTCAGTaGTGTCACAGTCTGAGTCTT +
Preference number: 4 (lower is better)
Translates to: QELVDSKDSKLGNGCPLFSCPIQ*CHSLSL
Trigger: AAGACTCAGACTGTGACAGCACTGAATTGGACAACT...GAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp CTTCTAGTTTCCGGGATATACCCCTTCCCCTGTGGTATTTGTACATTTAGTGCAGACTTCAGGTCTCTGTaGATAATCTTGTGCAGGTGC +
Preference number: 4 (lower is better)
Translates to: LLVSGIYPFPCGICTFSADFRSL*IILCRC
Trigger: GCACCTGCACAAGATTATCCACAGAGACCTGAAGTC...TGCACTAAATGTACAAATACCACAGGGGAAGGGGTATATCCCGGAAACTAGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
3UTR CAA 72 bp ACCACTCTACTCATTCACCAAGAAAACCCTCGACAGTaGGGCCTGCATGGAGTGGTTATATTTCAAGGTTGT +
Preference number: 4 (lower is better)
Translates to: TTLLIHQENPRQ*GLHGVVIFQGC
Trigger: ACAACCTTGAAATATAACCACTCCATGCAGGCCCAACTGTCGAGGGTTTTCTTGGTGAATGAGTAGAGTGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
3UTR CAA 72 bp CAAATGGATGTCAGTTGGCTCTTTGTGAAGTTAAGCTaGTGGTGTGGACCTGAGACACCTCTAGTTGTGTTC +
Preference number: 4 (lower is better)
Translates to: QMDVSWLFVKLS*WCGPETPLVVF
Trigger: GAACACAACTAGAGGTGTCTCAGGTCCACACCACAAGCTTAACTTCACAAAGAGCCAACTGACATCCATTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
CDS-3UTR TCA 90 bp ACCCCTTCCCCTGTGGTATTTGTACATTTAGTGCACATGGTATTAAGCCAAACAGGAAGTGCCAAAATCTaGGATCTTCACCACATCGTC +
Preference number: 4 (lower is better)
Translates to: TPSPVVFVHLVHMVLSQTGSAKI*DLHHIV
Trigger: GACGATGTGGTGAAGATCTCAGATTTTGGCACTTCC...TGTTTGGCTTAATACCATGTGCACTAAATGTACAAATACCACAGGGGAAGGGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
CDS-3UTR TCA 90 bp GTAGAAAGGCACTGTAGCCAGGTATGTTTACAAGGAGAATTTGGTACCAGTAAGACACAGGTTCATTTCTaGTCACTTCAGGAGCCATCC +
Preference number: 4 (lower is better)
Translates to: VERHCSQVCLQGEFGTSKTQVHF*SLQEPS
Trigger: GGATGGCTCCTGAAGTGATCAGAAATGAACCTGTGT...CTTACTGGTACCAAATTCTCCTTGTAAACATACCTGGCTACAGTGCCTTTCTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
CDS-3UTR TCA 90 bp ATTTATGGAGCTGGGCAGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATACACAGGTTCATTTCTaGTCACTTCAGGAGCCATCC +
Preference number: 4 (lower is better)
Translates to: IYGAGQELVDSKDSKLGNTQVHF*SLQEPS
Trigger: GGATGGCTCCTGAAGTGATCAGAAATGAACCTGTGT...ATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTGCCCAGCTCCATAAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR TCA 90 bp GTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCTACCTTGCATACTTTACAAGATCTGTCGGAATaGTGGGCGATTTCGTGGTTT +
Preference number: 4 (lower is better)
Translates to: VRIVNLGMAAPCSTLHTLQDLSE*WAISWF
Trigger: AAACCACGAAATCGCCCATCATTCCGACAGATCTTG...TAAAGTATGCAAGGTAGAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR TCA 90 bp ATTTATGGAGCTGGGCAGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATCAAGATCTGTCGGAATaGTGGGCGATTTCGTGGTTT +
Preference number: 4 (lower is better)
Translates to: IYGAGQELVDSKDSKLGNQDLSE*WAISWF
Trigger: AAACCACGAAATCGCCCATCATTCCGACAGATCTTG...ATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTGCCCAGCTCCATAAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp GTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCTACCTTGCATACTTTACTGTGGAGTAGGCTTTaGCAATCATTGTCCAGACAG +
Preference number: 4 (lower is better)
Translates to: VRIVNLGMAAPCSTLHTLLWSRL*QSLSRQ
Trigger: CTGTCTGGACAATGATTGGCAAAGCCTACTCCACAG...TAAAGTATGCAAGGTAGAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp ATTTATGGAGCTGGGCAGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATGTGATGATGTTGGGGTaGTTCAGCTTTCGAAGATGC +
Preference number: 4 (lower is better)
Translates to: IYGAGQELVDSKDSKLGNVMMLG*FSFRRC
Trigger: GCATCTTCGAAAGCTGAAGCACCCCAACATCATCAC...ATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTGCCCAGCTCCATAAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp TTGCTGCTACCCAGTGATAATGAAATGTACACTGAATGCCTTTCTCTCAAAGCTCCAGGCTACTGTTCCTaGAAAGGACATCTTGGTGCT +
Preference number: 4 (lower is better)
Translates to: LLLPSDNEMYTECLSLKAPGYCS*KGHLGA
Trigger: AGCACCAAGATGTCCTTTGCAGGAACAGTAGCCTGG...AGCTTTGAGAGAAAGGCATTCAGTGTACATTTCATTATCACTGGGTAGCAGCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
CDS-3UTR CCA 90 bp CTCTCAAAGCTTAATTGTATTCCAGGACCTCAAATGACCTATTTGAAACAAGTAATTGGCAAAAGGCTCTaGGGGAGGCTCTCCACCTGG +
Preference number: 4 (lower is better)
Translates to: LSKLNCIPGPQMTYLKQVIGKRL*GRLSTW
Trigger: CCAGGTGGAGAGCCTCCCCCAGAGCCTTTTGCCAAT...TACTTGTTTCAAATAGGTCATTTGAGGTCCTGGAATACAATTAAGCTTTGAGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
CDS-3UTR CCA 90 bp CTTCTAGTTTCCGGGATATACCCCTTCCCCTGTGGTATTTGTACATTTAGTGCATCCTGCTCATGTAGCTaGAGGACACTATTGGCAAAA +
Preference number: 4 (lower is better)
Translates to: LLVSGIYPFPCGICTFSASCSCS*RTLLAK
Trigger: TTTTGCCAATAGTGTCCTCCAGCTACATGAGCAGGA...TGCACTAAATGTACAAATACCACAGGGGAAGGGGTATATCCCGGAAACTAGAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
CDS-3UTR CCA 90 bp AAATCCAAGTTGAAACCATGTATTATACCACTCTACTCATTCACCAAGAAAACCGCTACCTCCTCCCCGTaGAAGCGTCCCAGGAAAACA +
Preference number: 4 (lower is better)
Translates to: KSKLKPCIIPLYSFTKKTATSSP*KRPRKT
Trigger: TGTTTTCCTGGGACGCTTCCACGGGGAGGAGGTAGC...GGTTTTCTTGGTGAATGAGTAGAGTGGTATAATACATGGTTTCAACTTGGATTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp GTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCTACCTTGCATACTTTAGACTTCAGGTCTCTGTaGATAATCTTGTGCAGGTGC +
Preference number: 4 (lower is better)
Translates to: VRIVNLGMAAPCSTLHTLDFRSL*IILCRC
Trigger: GCACCTGCACAAGATTATCCACAGAGACCTGAAGTC...TAAAGTATGCAAGGTAGAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp GAGAACACCTCAGGAACCTTGGTTGTAGTGGTGTTACATAAACAACCTTGTGCAAATTTTAAAACCATCTaGGCAGCTGGAGGGTACAGG +
Preference number: 4 (lower is better)
Translates to: ENTSGTLVVVVLHKQPCANFKTI*AAGGYR
Trigger: CCTGTACCCTCCAGCTGCCCAGATGGTTTTAAAATT...TGCACAAGGTTGTTTATGTAACACCACTACAACCAAGGTTCCTGAGGTGTTCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
CDS-3UTR CCA 90 bp AAATCCAAGTTGAAACCATGTATTATACCACTCTACTCATTCACCAAGAAAACCTTCTCCAGGCCCTACTaGTGGAGGGGGTTCCCCTTT +
Preference number: 4 (lower is better)
Translates to: KSKLKPCIIPLYSFTKKTFSRPY*WRGFPF
Trigger: AAAGGGGAACCCCCTCCACCAGTAGGGCCTGGAGAA...GGTTTTCTTGGTGAATGAGTAGAGTGGTATAATACATGGTTTCAACTTGGATTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp AAATCCAAGTTGAAACCATGTATTATACCACTCTACTCATTCACCAAGAAAACCGCATGGGCAAGGAGCTaGCTTCACGTTCAGGGACCA +
Preference number: 4 (lower is better)
Translates to: KSKLKPCIIPLYSFTKKTAWARS*LHVQGP
Trigger: TGGTCCCTGAACGTGAAGCCAGCTCCTTGCCCATGC...GGTTTTCTTGGTGAATGAGTAGAGTGGTATAATACATGGTTTCAACTTGGATTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR TCA 90 bp ATTTATGGAGCTGGGCAGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATTCATATAGCTGTCCTTaGGCGCAGAATTCCATAAGG +
Preference number: 4 (lower is better)
Translates to: IYGAGQELVDSKDSKLGNSYSCP*AQNSIR
Trigger: CCTTATGGAATTCTGCGCTCAAGGACAGCTATATGA...ATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTGCCCAGCTCCATAAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR TCA 90 bp TTGCTGCTACCCAGTGATAATGAAATGTACACTGAATGCCTTTCTCTCAAAGCTGCAACGACTCTGTCTTaGGAATATCTGGCCTTTTGC +
Preference number: 4 (lower is better)
Translates to: LLLPSDNEMYTECLSLKAATTLS*EYLAFC
Trigger: GCAAAAGGCCAGATATTCTCAAGACAGAGTCGTTGC...AGCTTTGAGAGAAAGGCATTCAGTGTACATTTCATTATCACTGGGTAGCAGCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
CDS-3UTR GCA 90 bp AAATCCAAGTTGAAACCATGTATTATACCACTCTACTCATTCACCAAGAAAACCCTTCAAGGAAGCCACTaGCACTCTGGCACTGCAGAC +
Preference number: 4 (lower is better)
Translates to: KSKLKPCIIPLYSFTKKTLQGSH*HSGTAD
Trigger: GTCTGCAGTGCCAGAGTGGCAGTGGCTTCCTTGAAG...GGTTTTCTTGGTGAATGAGTAGAGTGGTATAATACATGGTTTCAACTTGGATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp AAATCCAAGTTGAAACCATGTATTATACCACTCTACTCATTCACCAAGAAAACCTCATGCCACCAGCGATaGCCATGGACCAGTCAACCA +
Preference number: 4 (lower is better)
Translates to: KSKLKPCIIPLYSFTKKTSCHQR*PWTSQP
Trigger: TGGTTGACTGGTCCATGGGCATCGCTGGTGGCATGA...GGTTTTCTTGGTGAATGAGTAGAGTGGTATAATACATGGTTTCAACTTGGATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp AAATCCAAGTTGAAACCATGTATTATACCACTCTACTCATTCACCAAGAAAACCGGTGCAGGTAATTCATaGCACCAGCGATGCCCATGG +
Preference number: 4 (lower is better)
Translates to: KSKLKPCIIPLYSFTKKTGAGNS*HQRCPW
Trigger: CCATGGGCATCGCTGGTGGCATGAATTACCTGCACC...GGTTTTCTTGGTGAATGAGTAGAGTGGTATAATACATGGTTTCAACTTGGATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp AAATCCAAGTTGAAACCATGTATTATACCACTCTACTCATTCACCAAGAAAACCTCCTCTTCTAGGCGGTaGAGACAGGTCCCTTCTGAC +
Preference number: 4 (lower is better)
Translates to: KSKLKPCIIPLYSFTKKTSSSRR*RQVPSD
Trigger: GTCAGAAGGGACCTGTCTGCACCGCCTAGAAGAGGA...GGTTTTCTTGGTGAATGAGTAGAGTGGTATAATACATGGTTTCAACTTGGATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp CTTCTAGTTTCCGGGATATACCCCTTCCCCTGTGGTATTTGTACATTTAGTGCATCTTTGAGTTCTAGTTaGAGCATGAGGGCATTCAGT +
Preference number: 4 (lower is better)
Translates to: LLVSGIYPFPCGICTFSASLSSS*SMRAFS
Trigger: ACTGAATGCCCTCATGCTGCAACTAGAACTCAAAGA...TGCACTAAATGTACAAATACCACAGGGGAAGGGGTATATCCCGGAAACTAGAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
CDS-3UTR GCA 90 bp AAATCCAAGTTGAAACCATGTATTATACCACTCTACTCATTCACCAAGAAAACCTGCCAACTTCTGGTGTaGCACTTGGGGAAGGCTCAC +
Preference number: 4 (lower is better)
Translates to: KSKLKPCIIPLYSFTKKTCQLLV*HLGKAH
Trigger: GTGAGCCTTCCCCAAGTGGCACACCAGAAGTTGGCA...GGTTTTCTTGGTGAATGAGTAGAGTGGTATAATACATGGTTTCAACTTGGATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp ATTTATGGAGCTGGGCAGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATTCCTGCTCATGTAGCTaGAGGACACTATTGGCAAAA +
Preference number: 4 (lower is better)
Translates to: IYGAGQELVDSKDSKLGNSCSCS*RTLLAK
Trigger: TTTTGCCAATAGTGTCCTCCAGCTACATGAGCAGGA...ATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTGCCCAGCTCCATAAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp CATTTAGTGCACATGGTATTAAGCCAAACATCACAAATGGATGTCAGTTGGCTCCTGCAAAGGACATCTTaGTGCTCTTGTCACTCAGCT +
Preference number: 4 (lower is better)
Translates to: HLVHMVLSQTSQMDVSWLLQRTS*CSCHSA
Trigger: AGCTGAGTGACAAGAGCACCAAGATGTCCTTTGCAG...GAGCCAACTGACATCCATTTGTGATGTTTGGCTTAATACCATGTGCACTAAATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
CDS-3UTR CCA 90 bp ACCCCTTCCCCTGTGGTATTTGTACATTTAGTGCACATGGTATTAAGCCAAACAATCAGATCGTTCATCTaGTCGCTCATCAGTGTTGGT +
Preference number: 4 (lower is better)
Translates to: TPSPVVFVHLVHMVLSQTIRSFI*SLISVG
Trigger: ACCAACACTGATGAGCGACCAGATGAACGATCTGAT...TGTTTGGCTTAATACCATGTGCACTAAATGTACAAATACCACAGGGGAAGGGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
CDS-3UTR CCA 90 bp GTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCTACCTTGCATACTTTAAGGCATCAATGCTGTTaGAGTTGTCCAATTCAGTGC +
Preference number: 4 (lower is better)
Translates to: VRIVNLGMAAPCSTLHTLRHQCC*SCPIQC
Trigger: GCACTGAATTGGACAACTCCAACAGCATTGATGCCT...TAAAGTATGCAAGGTAGAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
3UTR CAA 72 bp TTAAATGTTAGGCTCCCAACACAAAGTTCCTTCACATaGGTGGGCTGTTCTAGTGTAAACACGACAGGATCA +
Preference number: 4 (lower is better)
Translates to: LNVRLPTQSSFT*VGCSSVNTTGS
Trigger: TGATCCTGTCGTGTTTACACTAGAACAGCCCACCAATGTGAAGGAACTTTGTGTTGGGAGCCTAACATTTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
3UTR CAA 72 bp CATGGTATTAAGCCAAACATCACAAATGGATGTCAGTaGGCTCTTTGTGAAGTTAAGCTTGTGGTGTGGACC +
Preference number: 4 (lower is better)
Translates to: HGIKPNITNGCQ*ALCEVKLVVWT
Trigger: GGTCCACACCACAAGCTTAACTTCACAAAGAGCCAACTGACATCCATTTGTGATGTTTGGCTTAATACCATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
CDS-3UTR TCA 90 bp ATTTATGGAGCTGGGCAGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATCAGACAGGTCCCTTCTaGCTTAATCTTTTCAAAGTG +
Preference number: 4 (lower is better)
Translates to: IYGAGQELVDSKDSKLGNQTGPF*LNLFKV
Trigger: CACTTTGAAAAGATTAAGTCAGAAGGGACCTGTCTG...ATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTGCCCAGCTCCATAAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp AGTGACTTACGTGGGTGTTGTTCCTGTCTGATGTTATTTTTATACCTTTTAACTGGTCTTTCTCGGGGGTaGAGTCTGAAGTGTCTGGAT +
Preference number: 4 (lower is better)
Translates to: SDLRGCCSCLMLFLYLLTGLSRG*SLKCLD
Trigger: ATCCAGACACTTCAGACTGCACCCCCGAGAAAGACC...AGTTAAAAGGTATAAAAATAACATCAGACAGGAACAACACCCACGTAAGTCACT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000023812.10
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp ATTTATGGAGCTGGGCAGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATTCAGCTCCTTGGAAGTaGCAAAATCTGAGATCTTCA +
Preference number: 4 (lower is better)
Translates to: IYGAGQELVDSKDSKLGNSAPWK*QNLRSS
Trigger: TGAAGATCTCAGATTTTGGCACTTCCAAGGAGCTGA...ATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTGCCCAGCTCCATAAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp GTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCTACCTTGCATACTTTATCTTTGAGTTCTAGTTaGAGCATGAGGGCATTCAGT +
Preference number: 4 (lower is better)
Translates to: VRIVNLGMAAPCSTLHTLSLSSS*SMRAFS
Trigger: ACTGAATGCCCTCATGCTGCAACTAGAACTCAAAGA...TAAAGTATGCAAGGTAGAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp GTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCTACCTTGCATACTTTAAGTTGTCCAATTCAGTaGTGTCACAGTCTGAGTCTT +
Preference number: 4 (lower is better)
Translates to: VRIVNLGMAAPCSTLHTLSCPIQ*CHSLSL
Trigger: AAGACTCAGACTGTGACAGCACTGAATTGGACAACT...TAAAGTATGCAAGGTAGAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp AAATCCAAGTTGAAACCATGTATTATACCACTCTACTCATTCACCAAGAAAACCGAAGTACACATTGGGTaGGCGTCAGGTCTTTCTCGG +
Preference number: 4 (lower is better)
Translates to: KSKLKPCIIPLYSFTKKTEVHIG*ASGLSR
Trigger: CCGAGAAAGACCTGACGCCCACCCAATGTGTACTTC...GGTTTTCTTGGTGAATGAGTAGAGTGGTATAATACATGGTTTCAACTTGGATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
3UTR CAA 72 bp AAAGGCACTGTAGCCAGGTATGTTTACAAGGAGAATTaGGTACCAGTAAGGCCACAGGTTTTGGATTTTGAA +
Preference number: 4 (lower is better)
Translates to: KGTVARYVYKEN*VPVRPQVLDFE
Trigger: TTCAAAATCCAAAACCTGTGGCCTTACTGGTACCAAATTCTCCTTGTAAACATACCTGGCTACAGTGCCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
CDS-3UTR GCA 90 bp AGTGACTTACGTGGGTGTTGTTCCTGTCTGATGTTATTTTTATACCTTTTAACTCATCAGTGTTGGTACTaGCAACTTCTGGTGTGCCAC +
Preference number: 4 (lower is better)
Translates to: SDLRGCCSCLMLFLYLLTHQCWY*QLLVCH
Trigger: GTGGCACACCAGAAGTTGGCAGTACCAACACTGATG...AGTTAAAAGGTATAAAAATAACATCAGACAGGAACAACACCCACGTAAGTCACT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023812.10
ENSMUST00000171565.8
CDS-3UTR TCA 90 bp AAATCCAAGTTGAAACCATGTATTATACCACTCTACTCATTCACCAAGAAAACCCCACATCGTCGTATGTaGTTAGCATGTTGGGTGACT +
Preference number: 4 (lower is better)
Translates to: KSKLKPCIIPLYSFTKKTPHRRM*LACWVT
Trigger: AGTCACCCAACATGCTAATCACATACGACGATGTGG...GGTTTTCTTGGTGAATGAGTAGAGTGGTATAATACATGGTTTCAACTTGGATTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR TCA 90 bp AGTGACTTACGTGGGTGTTGTTCCTGTCTGATGTTATTTTTATACCTTTTAACTACCCCAGATGATGGCTaGGGAATCTACATCTTTGTA +
Preference number: 4 (lower is better)
Translates to: SDLRGCCSCLMLFLYLLTTPDDG*GIYIFV
Trigger: TACAAAGATGTAGATTCCTCAGCCATCATCTGGGGT...AGTTAAAAGGTATAAAAATAACATCAGACAGGAACAACACCCACGTAAGTCACT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000023812.10
ENSMUST00000171565.8
CDS-3UTR CCA 90 bp AGTGACTTACGTGGGTGTTGTTCCTGTCTGATGTTATTTTTATACCTTTTAACTAATTTTAAAACCATCTaGGCAGCTGGAGGGTACAGG +
Preference number: 4 (lower is better)
Translates to: SDLRGCCSCLMLFLYLLTNFKTI*AAGGYR
Trigger: CCTGTACCCTCCAGCTGCCCAGATGGTTTTAAAATT...AGTTAAAAGGTATAAAAATAACATCAGACAGGAACAACACCCACGTAAGTCACT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000023812.10
ENSMUST00000171565.8
3UTR CAA 72 bp AAGCTTAATTGTATTCCAGGACCTCAAATGACCTATTaGAAACAAGTAGAAAGGCACTGTAGCCAGGTATGT +
Preference number: 4 (lower is better)
Translates to: KLNCIPGPQMTY*KQVERHCSQVC
Trigger: ACATACCTGGCTACAGTGCCTTTCTACTTGTTTCAAATAGGTCATTTGAGGTCCTGGAATACAATTAAGCTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
CDS-3UTR TCA 90 bp AAATCCAAGTTGAAACCATGTATTATACCACTCTACTCATTCACCAAGAAAACCCAGACAGGTCCCTTCTaGCTTAATCTTTTCAAAGTG +
Preference number: 4 (lower is better)
Translates to: KSKLKPCIIPLYSFTKKTQTGPF*LNLFKV
Trigger: CACTTTGAAAAGATTAAGTCAGAAGGGACCTGTCTG...GGTTTTCTTGGTGAATGAGTAGAGTGGTATAATACATGGTTTCAACTTGGATTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
3UTR CAA 72 bp GATAGTAAGGATAGTAAACTTGGGAATGGCTGCCCCTaGTTCTACCTTGCATACTTTAAAGTTCTAGTAATT +
Preference number: 4 (lower is better)
Translates to: DSKDSKLGNGCP*FYLAYFKVLVI
Trigger: AATTACTAGAACTTTAAAGTATGCAAGGTAGAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTACTATC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR GCA 90 bp AAATCCAAGTTGAAACCATGTATTATACCACTCTACTCATTCACCAAGAAAACCTTAATCTTTTCAAAGTaGAGTTTTACTTCTTCCCGC +
Preference number: 4 (lower is better)
Translates to: KSKLKPCIIPLYSFTKKTLIFSK*SFTSSR
Trigger: GCGGGAAGAAGTAAAACTGCACTTTGAAAAGATTAA...GGTTTTCTTGGTGAATGAGTAGAGTGGTATAATACATGGTTTCAACTTGGATTT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS CCA 90 bp GGGCCCACTCCTAGGCCCCCTGGGCTTCCTAGTCCTCCAGGCTCATaGGGTGGCAAAGCTGCACGAAGCCCAGGCAGGTCTCCACAGCTG +
Preference number: 5 (lower is better)
Translates to: GPTPRPPGLPSPPGS*GGKAARSPGRSPQL
Trigger: CAGCTGTGGAGACCTGCCTGGGCTTCGTGCAGCTTTGCCACCCCATGAGCCTGGAGGACTAGGAAGCCCAGGGGGCCTAGGAGTGGGCCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS GCA 90 bp CATGGGGTGGCAAAGCTGCACGAAGCCCAGGCAGGTCTCCACAGCTaGCCTTGGCACTGGCCTTTCGGTGACGGGTCTTGCCACGCCGAC +
Preference number: 5 (lower is better)
Translates to: HGVAKLHEAQAGLHS*PWHWPFGDGSCHAD
Trigger: GTCGGCGTGGCAAGACCCGTCACCGAAAGGCCAGTGCCAAGGGCAGCTGTGGAGACCTGCCTGGGCTTCGTGCAGCTTTGCCACCCCATG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS CCA 90 bp AAGCTGCACGAAGCCCAGGCAGGTCTCCACAGCTGCCCTTGGCACTaGCCTTTCGGTGACGGGTCTTGCCACGCCGACTCCTTCCAGGTG +
Preference number: 5 (lower is better)
Translates to: KLHEAQAGLHSCPWH*PFGDGSCHADSFQV
Trigger: CACCTGGAAGGAGTCGGCGTGGCAAGACCCGTCACCGAAAGGCCAGTGCCAAGGGCAGCTGTGGAGACCTGCCTGGGCTTCGTGCAGCTT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS CCA 90 bp GTGGCAAAGCTGCACGAAGCCCAGGCAGGTCTCCACAGCTGCCCTTaGCACTGGCCTTTCGGTGACGGGTCTTGCCACGCCGACTCCTTC +
Preference number: 5 (lower is better)
Translates to: VAKLHEAQAGLHSCP*HWPFGDGSCHADSF
Trigger: GAAGGAGTCGGCGTGGCAAGACCCGTCACCGAAAGGCCAGTGCCAAGGGCAGCTGTGGAGACCTGCCTGGGCTTCGTGCAGCTTTGCCAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS CCA 90 bp CTGGTGGAACCAGGAGCTGATCCCTCACTTGGAGGAGTATCGCCCTaGGGTGGAGGTGGTGAGCCAGGATCCCGAGCTCCCCCTGTAGCC +
Preference number: 5 (lower is better)
Translates to: LVEPGADPSLGGVSP*GGGGEPGSRAPPVA
Trigger: GGCTACAGGGGGAGCTCGGGATCCTGGCTCACCACCTCCACCCCAGGGCGATACTCCTCCAAGTGAGGGATCAGCTCCTGGTTCCACCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS CCA 90 bp GTGCTGTCACAGTCTGAGTCTTCAGGATTGGGGCCCTGGCCATCCTaGTGTTGCATGGGCAAGGAGCTGGCTTCACGTTCAGGGACCACC +
Preference number: 5 (lower is better)
Translates to: VLSQSESSGLGPWPS*CCMGKELASRSGTT
Trigger: GGTGGTCCCTGAACGTGAAGCCAGCTCCTTGCCCATGCAACACCAGGATGGCCAGGGCCCCAATCCTGAAGACTCAGACTGTGACAGCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS CCA 90 bp CCTCCACCCTGCCCACCGAGAGGCACAACATCTCGAAGTACACATTaGGTGGGCGTCAGGTCTTTCTCGGGGGTGCAGTCTGAAGTGTCT +
Preference number: 5 (lower is better)
Translates to: PPPCPPRGTTSRSTH*VGVRSFSGVQSEVS
Trigger: AGACACTTCAGACTGCACCCCCGAGAAAGACCTGACGCCCACCCAATGTGTACTTCGAGATGTTGTGCCTCTCGGTGGGCAGGGTGGAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CAA 90 bp GTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTCTGGCCCAAAGCCAGGGTCTGGCCATCCTGGTGTaGCATGGGCAAGGAGCTGGC +
Preference number: 5 (lower is better)
Translates to: VLQPEPSHAVSRLAQSQGLAILV*HGQGAG
Trigger: GCCAGCTCCTTGCCCATGCAACACCAGGATGGCCAG...ACCCTGGCTTTGGGCCAGACGACTAACAGCATGTGATGGCTCAGGCTGAAGAAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS GCA 90 bp TCACAGTCTGAGTCTTCAGGATTGGGGCCCTGGCCATCCTGGTGTTaGATGGGCAAGGAGCTGGCTTCACGTTCAGGGACCACCTCTGAA +
Preference number: 5 (lower is better)
Translates to: SQSESSGLGPWPSWC*MGKELASRSGTTSE
Trigger: TTCAGAGGTGGTCCCTGAACGTGAAGCCAGCTCCTTGCCCATGCAACACCAGGATGGCCAGGGCCCCAATCCTGAAGACTCAGACTGTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS CCA 90 bp CACCCTGCCCACCGAGAGGCACAACATCTCGAAGTACACATTGGGTaGGCGTCAGGTCTTTCTCGGGGGTGCAGTCTGAAGTGTCTGGAT +
Preference number: 5 (lower is better)
Translates to: HPAHREAQHLEVHIG*ASGLSRGCSLKCLD
Trigger: ATCCAGACACTTCAGACTGCACCCCCGAGAAAGACCTGACGCCCACCCAATGTGTACTTCGAGATGTTGTGCCTCTCGGTGGGCAGGGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS GCA 90 bp GTCTCCTGGGGTGTAGAGAGCACATCAGCGGAGGCGATGTCCAGGTaGAGCAAGATCTGTCGGAATGATGGGCGATTTCGTGGTTTGCTG +
Preference number: 5 (lower is better)
Translates to: VSWGVESTSAEAMSR*SKICRNDGRFRGLL
Trigger: CAGCAAACCACGAAATCGCCCATCATTCCGACAGATCTTGCTGCACCTGGACATCGCCTCCGCTGATGTGCTCTCTACACCCCAGGAGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS GCA 90 bp CTGGGGGCCGCAAGGCATCAATGCTGTTGGAGTTGTCCAATTCAGTaGTGTCACAGTCTGAGTCTTCAGGATTGGGGCCCTGGCCATCCT +
Preference number: 5 (lower is better)
Translates to: LGAARHQCCWSCPIQ*CHSLSLQDWGPGHP
Trigger: AGGATGGCCAGGGCCCCAATCCTGAAGACTCAGACTGTGACAGCACTGAATTGGACAACTCCAACAGCATTGATGCCTTGCGGCCCCCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS CCA 90 bp GGGCGCAGGCAGCCAAAAAGACCTTCAAGGAAGCCACTGCCACTCTaGCACTGCAGACGTACCTCATCAGCTCGAACTCTAGATGCTCGA +
Preference number: 5 (lower is better)
Translates to: GRRQPKRPSRKPLPL*HCRRTSSARTLDAR
Trigger: TCGAGCATCTAGAGTTCGAGCTGATGAGGTACGTCTGCAGTGCCAGAGTGGCAGTGGCTTCCTTGAAGGTCTTTTTGGCTGCCTGCGCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CAA 90 bp GTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTCTGGCCCAAAGCCAGGGTGGGCGATTTCGTGGTTaGCTGTTCCAGCACTGGCGA +
Preference number: 5 (lower is better)
Translates to: VLQPEPSHAVSRLAQSQGGRFRG*LFQHWR
Trigger: TCGCCAGTGCTGGAACAGCAAACCACGAAATCGCCC...ACCCTGGCTTTGGGCCAGACGACTAACAGCATGTGATGGCTCAGGCTGAAGAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CAA 90 bp CTACCTGCCCCTCCAGTGTTCAGGGATAGACAGTATAGAGACAAGCCTGGCTTTCTGGCCATCCTGGTGTaGCATGGGCAAGGAGCTGGC +
Preference number: 5 (lower is better)
Translates to: LPAPPVFRDRQYRDKPGFLAILV*HGQGAG
Trigger: GCCAGCTCCTTGCCCATGCAACACCAGGATGGCCAG...AAAGCCAGGCTTGTCTCTATACTGTCTATCCCTGAACACTGGAGGGGCAGGTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS CCA 90 bp TCCAATTCAGTGCTGTCACAGTCTGAGTCTTCAGGATTGGGGCCCTaGCCATCCTGGTGTTGCATGGGCAAGGAGCTGGCTTCACGTTCA +
Preference number: 5 (lower is better)
Translates to: SNSVLSQSESSGLGP*PSWCCMGKELASRS
Trigger: TGAACGTGAAGCCAGCTCCTTGCCCATGCAACACCAGGATGGCCAGGGCCCCAATCCTGAAGACTCAGACTGTGACAGCACTGAATTGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS CCA 90 bp TGGAGTTGTCCAATTCAGTGCTGTCACAGTCTGAGTCTTCAGGATTaGGGCCCTGGCCATCCTGGTGTTGCATGGGCAAGGAGCTGGCTT +
Preference number: 5 (lower is better)
Translates to: WSCPIQCCHSLSLQD*GPGHPGVAWARSWL
Trigger: AAGCCAGCTCCTTGCCCATGCAACACCAGGATGGCCAGGGCCCCAATCCTGAAGACTCAGACTGTGACAGCACTGAATTGGACAACTCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS TCA 90 bp GGCATCAATGCTGTTGGAGTTGTCCAATTCAGTGCTGTCACAGTCTaGGTCTTCAGGATTGGGGCCCTGGCCATCCTGGTGTTGCATGGG +
Preference number: 5 (lower is better)
Translates to: GINAVGVVQFSAVTV*VFRIGALAILVLHG
Trigger: CCCATGCAACACCAGGATGGCCAGGGCCCCAATCCTGAAGACTCAGACTGTGACAGCACTGAATTGGACAACTCCAACAGCATTGATGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS CCA 90 bp CAAAGGGGACTTCCCAAAGGTCTTCCTGCTGTTGCTTGTGTTCTGTaGAGTAGGCTTTGCCAATCATTGTCCAGACAGGGCGCAGGCAGC +
Preference number: 5 (lower is better)
Translates to: QRGLPKGLPAVACVL*SRLCQSLSRQGAGS
Trigger: GCTGCCTGCGCCCTGTCTGGACAATGATTGGCAAAGCCTACTCCACAGAACACAAGCAACAGCAGGAAGACCTTTGGGAAGTCCCCTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CAA 90 bp GGCACCAAGATAACAGTGGGGACTAACAGCACCCCAGTTCTTCAGCCTGAGCCACCTGCAAAGGACATCTaGGTGCTCTTGTCACTCAGC +
Preference number: 5 (lower is better)
Translates to: GTKITVGTNSTPVLQPEPPAKDI*VLLSLS
Trigger: GCTGAGTGACAAGAGCACCAAGATGTCCTTTGCAGG...TGGCTCAGGCTGAAGAACTGGGGTGCTGTTAGTCCCCACTGTTATCTTGGTGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CAA 90 bp CTACCTGCCCCTCCAGTGTTCAGGGATAGACAGTATAGAGACAAGCCTGGCTTTGGGCGATTTCGTGGTTaGCTGTTCCAGCACTGGCGA +
Preference number: 5 (lower is better)
Translates to: LPAPPVFRDRQYRDKPGFGRFRG*LFQHWR
Trigger: TCGCCAGTGCTGGAACAGCAAACCACGAAATCGCCC...AAAGCCAGGCTTGTCTCTATACTGTCTATCCCTGAACACTGGAGGGGCAGGTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS CCA 90 bp AGATCGTTCATCTGGTCGCTCATCAGTGTTGGTACTGCCAACTTCTaGTGTGCCACTTGGGGAAGGCTCACTAGCTGTACCTTCCTCCAC +
Preference number: 5 (lower is better)
Translates to: RSFIWSLISVGTANF*CATWGRLTSCTFLH
Trigger: GTGGAGGAAGGTACAGCTAGTGAGCCTTCCCCAAGTGGCACACCAGAAGTTGGCAGTACCAACACTGATGAGCGACCAGATGAACGATCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CAA 90 bp GTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTCTGGCCCAAAGCCAGGGTATCTCGAAGTACACATaGGGTGGGCGTCAGGTCTTT +
Preference number: 5 (lower is better)
Translates to: VLQPEPSHAVSRLAQSQGISKYT*GGRQVF
Trigger: AAAGACCTGACGCCCACCCAATGTGTACTTCGAGAT...ACCCTGGCTTTGGGCCAGACGACTAACAGCATGTGATGGCTCAGGCTGAAGAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS GCA 90 bp CCCAAAGGTCTTCCTGCTGTTGCTTGTGTTCTGTGGAGTAGGCTTTaGCAATCATTGTCCAGACAGGGCGCAGGCAGCCAAAAAGACCTT +
Preference number: 5 (lower is better)
Translates to: PKGLPAVACVLWSRL*QSLSRQGAGSQKDL
Trigger: AAGGTCTTTTTGGCTGCCTGCGCCCTGTCTGGACAATGATTGGCAAAGCCTACTCCACAGAACACAAGCAACAGCAGGAAGACCTTTGGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CAA 90 bp CAGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCAGGCTTTGCCAATCATaGTCCAGACAGGGCGCAGGC +
Preference number: 5 (lower is better)
Translates to: QELVDSKDSKLGNGCPLFRLCQS*SRQGAG
Trigger: GCCTGCGCCCTGTCTGGACAATGATTGGCAAAGCCT...GAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CAA 90 bp GTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTCTGGCCCAAAGCCAGGGTTGTGTGCAAACACCCTaGAAAGTGATGATGTTGGGG +
Preference number: 5 (lower is better)
Translates to: VLQPEPSHAVSRLAQSQGCVQTP*KVMMLG
Trigger: CCCCAACATCATCACTTTCAAGGGTGTTTGCACACA...ACCCTGGCTTTGGGCCAGACGACTAACAGCATGTGATGGCTCAGGCTGAAGAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CAA 90 bp GTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTCTGGCCCAAAGCCAGGGTAGTTCCATGTACAGGTaGTTGGCTCTCTCCAACTTC +
Preference number: 5 (lower is better)
Translates to: VLQPEPSHAVSRLAQSQGSSMYR*LALSNF
Trigger: GAAGTTGGAGAGAGCCAACAACCTGTACATGGAACT...ACCCTGGCTTTGGGCCAGACGACTAACAGCATGTGATGGCTCAGGCTGAAGAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CAA 90 bp GTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTCTGGCCCAAAGCCAGGGTGGCACGTTCCTTTTCTaGATGAGCTTCTCCATAGTG +
Preference number: 5 (lower is better)
Translates to: VLQPEPSHAVSRLAQSQGGTFLF*MSFSIV
Trigger: CACTATGGAGAAGCTCATCAAGAAAAGGAACGTGCC...ACCCTGGCTTTGGGCCAGACGACTAACAGCATGTGATGGCTCAGGCTGAAGAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CAA 90 bp GTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTCTGGCCCAAAGCCAGGGTTTGAAAGTGATGATGTaGGGGTGCTTCAGCTTTCGA +
Preference number: 5 (lower is better)
Translates to: VLQPEPSHAVSRLAQSQGLKVMM*GCFSFR
Trigger: TCGAAAGCTGAAGCACCCCAACATCATCACTTTCAA...ACCCTGGCTTTGGGCCAGACGACTAACAGCATGTGATGGCTCAGGCTGAAGAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CAA 90 bp GGGACTAACAGCACCCCAGTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTAGTTCCATGTACAGGTaGTTGGCTCTCTCCAACTTC +
Preference number: 5 (lower is better)
Translates to: GTNSTPVLQPEPSHAVSRSSMYR*LALSNF
Trigger: GAAGTTGGAGAGAGCCAACAACCTGTACATGGAACT...ACGACTAACAGCATGTGATGGCTCAGGCTGAAGAACTGGGGTGCTGTTAGTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CAA 90 bp GTTCTTCAGCCTGAGCCATCACATGCTGTTAGTCGTCTGGCCCAAAGCCAGGGTAGCAACGACTCTGTCTaGAGAATATCTGGCCTTTTG +
Preference number: 5 (lower is better)
Translates to: VLQPEPSHAVSRLAQSQGSNDSV*RISGLL
Trigger: CAAAAGGCCAGATATTCTCAAGACAGAGTCGTTGCT...ACCCTGGCTTTGGGCCAGACGACTAACAGCATGTGATGGCTCAGGCTGAAGAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS GCA 90 bp CAGGGGGCCTGTGTGCAAACACCCTTGAAAGTGATGATGTTGGGGTaGTTCAGCTTTCGAAGATGCTTGATGTCAGTCTCCTTGAGATCT +
Preference number: 5 (lower is better)
Translates to: QGACVQTPLKVMMLG*FSFRRCLMSVSLRS
Trigger: AGATCTCAAGGAGACTGACATCAAGCATCTTCGAAAGCTGAAGCACCCCAACATCATCACTTTCAAGGGTGTTTGCACACAGGCCCCCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS GCA 90 bp CTGAGCTCCTCCCTTCTCCGCATCACCAGTTCCTCTTCTAGGCGGTaGAGACAGGTCCCTTCTGACTTAATCTTTTCAAAGTGCAGTTTT +
Preference number: 5 (lower is better)
Translates to: LSSSLLRITSSSSRR*RQVPSDLIFSKCSF
Trigger: AAAACTGCACTTTGAAAAGATTAAGTCAGAAGGGACCTGTCTGCACCGCCTAGAAGAGGAACTGGTGATGCGGAGAAGGGAGGAGCTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS GCA 90 bp AAAGCCTGCTCTCGCCTGAGCAATTCCCTCTCTTTGAGTTCTAGTTaGAGCATGAGGGCATTCAGTTCCATGTACAGGTTGTTGGCTCTC +
Preference number: 5 (lower is better)
Translates to: KACSRLSNSLSLSSS*SMRAFSSMYRLLAL
Trigger: GAGAGCCAACAACCTGTACATGGAACTGAATGCCCTCATGCTGCAACTAGAACTCAAAGAGAGGGAATTGCTCAGGCGAGAGCAGGCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CAA 90 bp CAGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCCCTGCAAAGGACATCTaGGTGCTCTTGTCACTCAGC +
Preference number: 5 (lower is better)
Translates to: QELVDSKDSKLGNGCPLFPAKDI*VLLSLS
Trigger: GCTGAGTGACAAGAGCACCAAGATGTCCTTTGCAGG...GAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CAA 90 bp ACCCCTTCCCCTGTGGTATTTGTACATTTAGTGCACATGGTATTAAGCCAAACAAGGCTTTGCCAATCATaGTCCAGACAGGGCGCAGGC +
Preference number: 5 (lower is better)
Translates to: TPSPVVFVHLVHMVLSQTRLCQS*SRQGAG
Trigger: GCCTGCGCCCTGTCTGGACAATGATTGGCAAAGCCT...TGTTTGGCTTAATACCATGTGCACTAAATGTACAAATACCACAGGGGAAGGGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
CDS-3UTR CAA 90 bp CAGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCTGTGTGCAAACACCCTaGAAAGTGATGATGTTGGGG +
Preference number: 5 (lower is better)
Translates to: QELVDSKDSKLGNGCPLFCVQTP*KVMMLG
Trigger: CCCCAACATCATCACTTTCAAGGGTGTTTGCACACA...GAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CAA 90 bp CAGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCGGCACGTTCCTTTTCTaGATGAGCTTCTCCATAGTG +
Preference number: 5 (lower is better)
Translates to: QELVDSKDSKLGNGCPLFGTFLF*MSFSIV
Trigger: CACTATGGAGAAGCTCATCAAGAAAAGGAACGTGCC...GAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CAA 90 bp GTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCTACCTTGCATACTTTACCTGCAAAGGACATCTaGGTGCTCTTGTCACTCAGC +
Preference number: 5 (lower is better)
Translates to: VRIVNLGMAAPCSTLHTLPAKDI*VLLSLS
Trigger: GCTGAGTGACAAGAGCACCAAGATGTCCTTTGCAGG...TAAAGTATGCAAGGTAGAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CAA 90 bp ATTTATGGAGCTGGGCAGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATTCCATGTACAGGTTGTaGGCTCTCTCCAACTTCCGT +
Preference number: 5 (lower is better)
Translates to: IYGAGQELVDSKDSKLGNSMYRL*ALSNFR
Trigger: ACGGAAGTTGGAGAGAGCCAACAACCTGTACATGGA...ATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTGCCCAGCTCCATAAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CAA 90 bp GAGAACACCTCAGGAACCTTGGTTGTAGTGGTGTTACATAAACAACCTTGTGCAAGTTCCATGTACAGGTaGTTGGCTCTCTCCAACTTC +
Preference number: 5 (lower is better)
Translates to: ENTSGTLVVVVLHKQPCASSMYR*LALSNF
Trigger: GAAGTTGGAGAGAGCCAACAACCTGTACATGGAACT...TGCACAAGGTTGTTTATGTAACACCACTACAACCAAGGTTCCTGAGGTGTTCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
CDS-3UTR CAA 90 bp TTTCCGGGATATACCCCTTCCCCTGTGGTATTTGTACATTTAGTGCACATGGTAGGCACGTTCCTTTTCTaGATGAGCTTCTCCATAGTG +
Preference number: 5 (lower is better)
Translates to: FPGYTPSPVVFVHLVHMVGTFLF*MSFSIV
Trigger: CACTATGGAGAAGCTCATCAAGAAAAGGAACGTGCC...TACCATGTGCACTAAATGTACAAATACCACAGGGGAAGGGGTATATCCCGGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
CDS-3UTR CAA 90 bp AAATCCAAGTTGAAACCATGTATTATACCACTCTACTCATTCACCAAGAAAACCAGGCTTTGCCAATCATaGTCCAGACAGGGCGCAGGC +
Preference number: 5 (lower is better)
Translates to: KSKLKPCIIPLYSFTKKTRLCQS*SRQGAG
Trigger: GCCTGCGCCCTGTCTGGACAATGATTGGCAAAGCCT...GGTTTTCTTGGTGAATGAGTAGAGTGGTATAATACATGGTTTCAACTTGGATTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CAA 90 bp GTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCTACCTTGCATACTTTATGTGTGCAAACACCCTaGAAAGTGATGATGTTGGGG +
Preference number: 5 (lower is better)
Translates to: VRIVNLGMAAPCSTLHTLCVQTP*KVMMLG
Trigger: CCCCAACATCATCACTTTCAAGGGTGTTTGCACACA...TAAAGTATGCAAGGTAGAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CAA 90 bp AGTGACTTACGTGGGTGTTGTTCCTGTCTGATGTTATTTTTATACCTTTTAACTGGGCGATTTCGTGGTTaGCTGTTCCAGCACTGGCGA +
Preference number: 5 (lower is better)
Translates to: SDLRGCCSCLMLFLYLLTGRFRG*LFQHWR
Trigger: TCGCCAGTGCTGGAACAGCAAACCACGAAATCGCCC...AGTTAAAAGGTATAAAAATAACATCAGACAGGAACAACACCCACGTAAGTCACT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023812.10
ENSMUST00000171565.8
CDS-3UTR CAA 90 bp GTAGAAAGGCACTGTAGCCAGGTATGTTTACAAGGAGAATTTGGTACCAGTAAGAGCAACGACTCTGTCTaGAGAATATCTGGCCTTTTG +
Preference number: 5 (lower is better)
Translates to: VERHCSQVCLQGEFGTSKSNDSV*RISGLL
Trigger: CAAAAGGCCAGATATTCTCAAGACAGAGTCGTTGCT...CTTACTGGTACCAAATTCTCCTTGTAAACATACCTGGCTACAGTGCCTTTCTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
CDS-3UTR CAA 90 bp ATTTATGGAGCTGGGCAGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATAGCAACGACTCTGTCTaGAGAATATCTGGCCTTTTG +
Preference number: 5 (lower is better)
Translates to: IYGAGQELVDSKDSKLGNSNDSV*RISGLL
Trigger: CAAAAGGCCAGATATTCTCAAGACAGAGTCGTTGCT...ATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTGCCCAGCTCCATAAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CAA 90 bp GTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCTACCTTGCATACTTTATCAATGCTGTTGGAGTaGTCCAATTCAGTGCTGTCA +
Preference number: 5 (lower is better)
Translates to: VRIVNLGMAAPCSTLHTLSMLLE*SNSVLS
Trigger: TGACAGCACTGAATTGGACAACTCCAACAGCATTGA...TAAAGTATGCAAGGTAGAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CAA 90 bp ATTTATGGAGCTGGGCAGGAACTCGTGGATAGTAAGGATAGTAAACTTGGGAATTCAATGCTGTTGGAGTaGTCCAATTCAGTGCTGTCA +
Preference number: 5 (lower is better)
Translates to: IYGAGQELVDSKDSKLGNSMLLE*SNSVLS
Trigger: TGACAGCACTGAATTGGACAACTCCAACAGCATTGA...ATTCCCAAGTTTACTATCCTTACTATCCACGAGTTCCTGCCCAGCTCCATAAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CAA 90 bp GTAAGGATAGTAAACTTGGGAATGGCTGCCCCTTGTTCTACCTTGCATACTTTAAAGGCATCAATGCTGTaGGAGTTGTCCAATTCAGTG +
Preference number: 5 (lower is better)
Translates to: VRIVNLGMAAPCSTLHTLKASML*ELSNSV
Trigger: CACTGAATTGGACAACTCCAACAGCATTGATGCCTT...TAAAGTATGCAAGGTAGAACAAGGGGCAGCCATTCCCAAGTTTACTATCCTTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CAA 90 bp CATTTAGTGCACATGGTATTAAGCCAAACATCACAAATGGATGTCAGTTGGCTCTCAATGCTGTTGGAGTaGTCCAATTCAGTGCTGTCA +
Preference number: 5 (lower is better)
Translates to: HLVHMVLSQTSQMDVSWLSMLLE*SNSVLS
Trigger: TGACAGCACTGAATTGGACAACTCCAACAGCATTGA...GAGCCAACTGACATCCATTTGTGATGTTTGGCTTAATACCATGTGCACTAAATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023812.10
CDS-3UTR CAA 90 bp AAATCCAAGTTGAAACCATGTATTATACCACTCTACTCATTCACCAAGAAAACCTCCATGTACAGGTTGTaGGCTCTCTCCAACTTCCGT +
Preference number: 5 (lower is better)
Translates to: KSKLKPCIIPLYSFTKKTSMYRL*ALSNFR
Trigger: ACGGAAGTTGGAGAGAGCCAACAACCTGTACATGGA...GGTTTTCTTGGTGAATGAGTAGAGTGGTATAATACATGGTTTCAACTTGGATTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS-3UTR CAA 90 bp AGTGACTTACGTGGGTGTTGTTCCTGTCTGATGTTATTTTTATACCTTTTAACTTCCATGTACAGGTTGTaGGCTCTCTCCAACTTCCGT +
Preference number: 5 (lower is better)
Translates to: SDLRGCCSCLMLFLYLLTSMYRL*ALSNFR
Trigger: ACGGAAGTTGGAGAGAGCCAACAACCTGTACATGGA...AGTTAAAAGGTATAAAAATAACATCAGACAGGAACAACACCCACGTAAGTCACT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023812.10
ENSMUST00000171565.8
CDS-3UTR CAA 90 bp AGTGACTTACGTGGGTGTTGTTCCTGTCTGATGTTATTTTTATACCTTTTAACTAAGGCATCAATGCTGTaGGAGTTGTCCAATTCAGTG +
Preference number: 5 (lower is better)
Translates to: SDLRGCCSCLMLFLYLLTKASML*ELSNSV
Trigger: CACTGAATTGGACAACTCCAACAGCATTGATGCCTT...AGTTAAAAGGTATAAAAATAACATCAGACAGGAACAACACCCACGTAAGTCACT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023812.10
ENSMUST00000171565.8
CDS CCA 72 bp GAAGCCCAGGCAGGTCTCCACAGCTGCCCTTGGCACTaGCCTTTCGGTGACGGGTCTTGCCACGCCGACTCC +
Preference number: 6 (lower is better)
Translates to: EAQAGLHSCPWH*PFGDGSCHADS
Trigger: GGAGTCGGCGTGGCAAGACCCGTCACCGAAAGGCCAGTGCCAAGGGCAGCTGTGGAGACCTGCCTGGGCTTC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS CCA 72 bp CTGCACGAAGCCCAGGCAGGTCTCCACAGCTGCCCTTaGCACTGGCCTTTCGGTGACGGGTCTTGCCACGCC +
Preference number: 6 (lower is better)
Translates to: LHEAQAGLHSCP*HWPFGDGSCHA
Trigger: GGCGTGGCAAGACCCGTCACCGAAAGGCCAGTGCCAAGGGCAGCTGTGGAGACCTGCCTGGGCTTCGTGCAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS CCA 72 bp CCAGGAGCTGATCCCTCACTTGGAGGAGTATCGCCCTaGGGTGGAGGTGGTGAGCCAGGATCCCGAGCTCCC +
Preference number: 6 (lower is better)
Translates to: PGADPSLGGVSP*GGGGEPGSRAP
Trigger: GGGAGCTCGGGATCCTGGCTCACCACCTCCACCCCAGGGCGATACTCCTCCAAGTGAGGGATCAGCTCCTGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS CAA 90 bp CCCCAGGCGAATCTGGGCTGGTGGAACCAGGAGCTGATCCCTCACTaGGAGGAGTATCGCCCTGGGGTGGAGGTGGTGAGCCAGGATCCC +
Preference number: 6 (lower is better)
Translates to: PQANLGWWNQELIPH*EEYRPGVEVVSQDP
Trigger: GGGATCCTGGCTCACCACCTCCACCCCAGGGCGATACTCCTCCAAGTGAGGGATCAGCTCCTGGTTCCACCAGCCCAGATTCGCCTGGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS TCA 72 bp TCCCCCAGGCGAATCTGGGCTGGTGGAACCAGGAGCTaGTCCCTCACTTGGAGGAGTATCGCCCTGGGGTGG +
Preference number: 6 (lower is better)
Translates to: SPRRIWAGGTRS*SLTWRSIALGW
Trigger: CCACCCCAGGGCGATACTCCTCCAAGTGAGGGATCAGCTCCTGGTTCCACCAGCCCAGATTCGCCTGGGGGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS GCA 72 bp GCAAAGCTGCACGAAGCCCAGGCAGGTCTCCACAGCTaGCCTTGGCACTGGCCTTTCGGTGACGGGTCTTGC +
Preference number: 6 (lower is better)
Translates to: AKLHEAQAGLHS*PWHWPFGDGSC
Trigger: GCAAGACCCGTCACCGAAAGGCCAGTGCCAAGGGCAGCTGTGGAGACCTGCCTGGGCTTCGTGCAGCTTTGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS CAA 72 bp AATCTGGGCTGGTGGAACCAGGAGCTGATCCCTCACTaGGAGGAGTATCGCCCTGGGGTGGAGGTGGTGAGC +
Preference number: 6 (lower is better)
Translates to: NLGWWNQELIPH*EEYRPGVEVVS
Trigger: GCTCACCACCTCCACCCCAGGGCGATACTCCTCCAAGTGAGGGATCAGCTCCTGGTTCCACCAGCCCAGATT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS TCA 72 bp CTCATCAGCTCGAACTCTAGATGCTCGACTCTCAGGTaGCCCAGTGGCTCCCCCTGGCCCACCTGTATCCTG +
Preference number: 6 (lower is better)
Translates to: LISSNSRCSTLR*PSGSPWPTCIL
Trigger: CAGGATACAGGTGGGCCAGGGGGAGCCACTGGGTCACCTGAGAGTCGAGCATCTAGAGTTCGAGCTGATGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS GCA 72 bp GGTGACCCAGTGGCTCCCCCTGGCCCACCTGTATCCTaGTCATGTAGCTGGAGGACACTATTGGCAAAAGGC +
Preference number: 6 (lower is better)
Translates to: GDPVAPPGPPVS*SCSWRTLLAKG
Trigger: GCCTTTTGCCAATAGTGTCCTCCAGCTACATGAGCAGGATACAGGTGGGCCAGGGGGAGCCACTGGGTCACC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS CAA 72 bp CTGCCCACCGAGAGGCACAACATCTCGAAGTACACATaGGGTGGGCGTCAGGTCTTTCTCGGGGGTGCAGTC +
Preference number: 6 (lower is better)
Translates to: LPTERHNISKYT*GGRQVFLGGAV
Trigger: GACTGCACCCCCGAGAAAGACCTGACGCCCACCCAATGTGTACTTCGAGATGTTGTGCCTCTCGGTGGGCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS CCA 72 bp TGCCCACCGAGAGGCACAACATCTCGAAGTACACATTaGGTGGGCGTCAGGTCTTTCTCGGGGGTGCAGTCT +
Preference number: 6 (lower is better)
Translates to: CPPRGTTSRSTH*VGVRSFSGVQS
Trigger: AGACTGCACCCCCGAGAAAGACCTGACGCCCACCCAATGTGTACTTCGAGATGTTGTGCCTCTCGGTGGGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS CCA 72 bp CACCTGTATCCTGCTCATGTAGCTGGAGGACACTATTaGCAAAAGGCTCTGGGGGAGGCTCTCCACCTGGGG +
Preference number: 6 (lower is better)
Translates to: HLYPAHVAGGHY*QKALGEALHLG
Trigger: CCCCAGGTGGAGAGCCTCCCCCAGAGCCTTTTGCCAATAGTGTCCTCCAGCTACATGAGCAGGATACAGGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS TCA 72 bp TTGGGTGGGCGTCAGGTCTTTCTCGGGGGTGCAGTCTaGAGTGTCTGGATCCAGCTTTCGCATAGAAGCCTC +
Preference number: 6 (lower is better)
Translates to: LGGRQVFLGGAV*SVWIQLSHRSL
Trigger: GAGGCTTCTATGCGAAAGCTGGATCCAGACACTTCAGACTGCACCCCCGAGAAAGACCTGACGCCCACCCAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000023812.10
ENSMUST00000169367.8
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS CCA 72 bp CACCGAGAGGCACAACATCTCGAAGTACACATTGGGTaGGCGTCAGGTCTTTCTCGGGGGTGCAGTCTGAAG +
Preference number: 6 (lower is better)
Translates to: HREAQHLEVHIG*ASGLSRGCSLK
Trigger: CTTCAGACTGCACCCCCGAGAAAGACCTGACGCCCACCCAATGTGTACTTCGAGATGTTGTGCCTCTCGGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS CCA 72 bp CCAATTCAGTGCTGTCACAGTCTGAGTCTTCAGGATTaGGGCCCTGGCCATCCTGGTGTTGCATGGGCAAGG +
Preference number: 6 (lower is better)
Translates to: PIQCCHSLSLQD*GPGHPGVAWAR
Trigger: CCTTGCCCATGCAACACCAGGATGGCCAGGGCCCCAATCCTGAAGACTCAGACTGTGACAGCACTGAATTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS CAA 90 bp TTGGAGTTGTCCAATTCAGTGCTGTCACAGTCTGAGTCTTCAGGATaGGGGCCCTGGCCATCCTGGTGTTGCATGGGCAAGGAGCTGGCT +
Preference number: 6 (lower is better)
Translates to: LELSNSVLSQSESSG*GPWPSWCCMGKELA
Trigger: AGCCAGCTCCTTGCCCATGCAACACCAGGATGGCCAGGGCCCCAATCCTGAAGACTCAGACTGTGACAGCACTGAATTGGACAACTCCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS TCA 72 bp GGAGGCGATGTCCAGGTGCAGCAAGATCTGTCGGAATaGTGGGCGATTTCGTGGTTTGCTGTTCCAGCACTG +
Preference number: 6 (lower is better)
Translates to: GGDVQVQQDLSE*WAISWFAVPAL
Trigger: CAGTGCTGGAACAGCAAACCACGAAATCGCCCATCATTCCGACAGATCTTGCTGCACCTGGACATCGCCTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS TCA 72 bp GCTGTTGGAGTTGTCCAATTCAGTGCTGTCACAGTCTaGGTCTTCAGGATTGGGGCCCTGGCCATCCTGGTG +
Preference number: 6 (lower is better)
Translates to: AVGVVQFSAVTV*VFRIGALAILV
Trigger: CACCAGGATGGCCAGGGCCCCAATCCTGAAGACTCAGACTGTGACAGCACTGAATTGGACAACTCCAACAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS GCA 72 bp GGTGTAGAGAGCACATCAGCGGAGGCGATGTCCAGGTaGAGCAAGATCTGTCGGAATGATGGGCGATTTCGT +
Preference number: 6 (lower is better)
Translates to: GVESTSAEAMSR*SKICRNDGRFR
Trigger: ACGAAATCGCCCATCATTCCGACAGATCTTGCTGCACCTGGACATCGCCTCCGCTGATGTGCTCTCTACACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS GCA 72 bp CTTCCTGCTGTTGCTTGTGTTCTGTGGAGTAGGCTTTaGCAATCATTGTCCAGACAGGGCGCAGGCAGCCAA +
Preference number: 6 (lower is better)
Translates to: LPAVACVLWSRL*QSLSRQGAGSQ
Trigger: TTGGCTGCCTGCGCCCTGTCTGGACAATGATTGGCAAAGCCTACTCCACAGAACACAAGCAACAGCAGGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS GCA 72 bp CAGATCGTTCATCTGGTCGCTCATCAGTGTTGGTACTaGCAACTTCTGGTGTGCCACTTGGGGAAGGCTCAC +
Preference number: 6 (lower is better)
Translates to: QIVHLVAHQCWY*QLLVCHLGKAH
Trigger: GTGAGCCTTCCCCAAGTGGCACACCAGAAGTTGGCAGTACCAACACTGATGAGCGACCAGATGAACGATCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS CCA 72 bp ATCTGGTCGCTCATCAGTGTTGGTACTGCCAACTTCTaGTGTGCCACTTGGGGAAGGCTCACTAGCTGTACC +
Preference number: 6 (lower is better)
Translates to: IWSLISVGTANF*CATWGRLTSCT
Trigger: GGTACAGCTAGTGAGCCTTCCCCAAGTGGCACACCAGAAGTTGGCAGTACCAACACTGATGAGCGACCAGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS CAA 72 bp GGAGCCATCCAGGCTACTGTTCCTGCAAAGGACATCTaGGTGCTCTTGTCACTCAGCTCCTTGGAAGTGCCA +
Preference number: 6 (lower is better)
Translates to: GAIQATVPAKDI*VLLSLSSLEVP
Trigger: TGGCACTTCCAAGGAGCTGAGTGACAAGAGCACCAAGATGTCCTTTGCAGGAACAGTAGCCTGGATGGCTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS CAA 72 bp GAGGCTGGGGGCCGCAAGGCATCAATGCTGTTGGAGTaGTCCAATTCAGTGCTGTCACAGTCTGAGTCTTCA +
Preference number: 6 (lower is better)
Translates to: EAGGRKASMLLE*SNSVLSQSESS
Trigger: TGAAGACTCAGACTGTGACAGCACTGAATTGGACAACTCCAACAGCATTGATGCCTTGCGGCCCCCAGCCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS CCA 72 bp CAGCCAAAAAGACCTTCAAGGAAGCCACTGCCACTCTaGCACTGCAGACGTACCTCATCAGCTCGAACTCTA +
Preference number: 6 (lower is better)
Translates to: QPKRPSRKPLPL*HCRRTSSARTL
Trigger: TAGAGTTCGAGCTGATGAGGTACGTCTGCAGTGCCAGAGTGGCAGTGGCTTCCTTGAAGGTCTTTTTGGCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS CCA 72 bp GAGCCATCCAGGCTACTGTTCCTGCAAAGGACATCTTaGTGCTCTTGTCACTCAGCTCCTTGGAAGTGCCAA +
Preference number: 6 (lower is better)
Translates to: EPSRLLFLQRTS*CSCHSAPWKCQ
Trigger: TTGGCACTTCCAAGGAGCTGAGTGACAAGAGCACCAAGATGTCCTTTGCAGGAACAGTAGCCTGGATGGCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS CCA 72 bp ATCAGTGTTGGTACTGCCAACTTCTGGTGTGCCACTTaGGGAAGGCTCACTAGCTGTACCTTCCTCCACATC +
Preference number: 6 (lower is better)
Translates to: ISVGTANFWCAT*GRLTSCTFLHI
Trigger: GATGTGGAGGAAGGTACAGCTAGTGAGCCTTCCCCAAGTGGCACACCAGAAGTTGGCAGTACCAACACTGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS CAA 90 bp ATGTTGGGGTGCTTCAGCTTTCGAAGATGCTTGATGTCAGTCTCCTaGAGATCTCGAACCTTCTTCACAGCTACCTCCTCCCCGTGGAAG +
Preference number: 6 (lower is better)
Translates to: MLGCFSFRRCLMSVS*RSRTFFTATSSPWK
Trigger: CTTCCACGGGGAGGAGGTAGCTGTGAAGAAGGTTCGAGATCTCAAGGAGACTGACATCAAGCATCTTCGAAAGCTGAAGCACCCCAACAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS CAA 90 bp CACCGCCTTTCTAAAGCCTGCTCTCGCCTGAGCAATTCCCTCTCTTaGAGTTCTAGTTGCAGCATGAGGGCATTCAGTTCCATGTACAGG +
Preference number: 6 (lower is better)
Translates to: HRLSKACSRLSNSLS*SSSCSMRAFSSMYR
Trigger: CCTGTACATGGAACTGAATGCCCTCATGCTGCAACTAGAACTCAAAGAGAGGGAATTGCTCAGGCGAGAGCAGGCTTTAGAAAGGCGGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS CAA 90 bp TGTGAGCACATGTCATCAGATCGTTCATCTGGTCGCTCATCAGTGTaGGTACTGCCAACTTCTGGTGTGCCACTTGGGGAAGGCTCACTA +
Preference number: 6 (lower is better)
Translates to: CEHMSSDRSSGRSSV*VLPTSGVPLGEGSL
Trigger: TAGTGAGCCTTCCCCAAGTGGCACACCAGAAGTTGGCAGTACCAACACTGATGAGCGACCAGATGAACGATCTGATGACATGTGCTCACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS GCA 72 bp GCAAGGCATCAATGCTGTTGGAGTTGTCCAATTCAGTaGTGTCACAGTCTGAGTCTTCAGGATTGGGGCCCT +
Preference number: 6 (lower is better)
Translates to: ARHQCCWSCPIQ*CHSLSLQDWGP
Trigger: AGGGCCCCAATCCTGAAGACTCAGACTGTGACAGCACTGAATTGGACAACTCCAACAGCATTGATGCCTTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS TCA 72 bp TCTCCTTCTTCTTCTTCAGATGAGATACCACGTTTCTaGCTTCGAGTCACAGCAGCCCTGTACAGCAGCGCA +
Preference number: 6 (lower is better)
Translates to: SPSSSSDEIPRF*LRVTAALYSSA
Trigger: TGCGCTGCTGTACAGGGCTGCTGTGACTCGAAGTCAGAAACGTGGTATCTCATCTGAAGAAGAAGAAGGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS CAA 72 bp TCTAAAGCCTGCTCTCGCCTGAGCAATTCCCTCTCTTaGAGTTCTAGTTGCAGCATGAGGGCATTCAGTTCC +
Preference number: 6 (lower is better)
Translates to: SKACSRLSNSLS*SSSCSMRAFSS
Trigger: GGAACTGAATGCCCTCATGCTGCAACTAGAACTCAAAGAGAGGGAATTGCTCAGGCGAGAGCAGGCTTTAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS CAA 72 bp CTGTGGGGCGACAGTTTCTGTGGCACGTTCCTTTTCTaGATGAGCTTCTCCATAGTGTTTCCATGTAGGAGG +
Preference number: 6 (lower is better)
Translates to: LWGDSFCGTFLF*MSFSIVFPCRR
Trigger: CCTCCTACATGGAAACACTATGGAGAAGCTCATCAAGAAAAGGAACGTGCCACAGAAACTGTCGCCCCACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS CAA 72 bp AGGGCTGCATCTAGTTTAGGTAGCAACGACTCTGTCTaGAGAATATCTGGCCTTTTGCTGTGGGGCGACAGT +
Preference number: 6 (lower is better)
Translates to: RAASSLGSNDSV*RISGLLLWGDS
Trigger: ACTGTCGCCCCACAGCAAAAGGCCAGATATTCTCAAGACAGAGTCGTTGCTACCTAAACTAGATGCAGCCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS CAA 72 bp TGCTTCAGCTTTCGAAGATGCTTGATGTCAGTCTCCTaGAGATCTCGAACCTTCTTCACAGCTACCTCCTCC +
Preference number: 6 (lower is better)
Translates to: CFSFRRCLMSVS*RSRTFFTATSS
Trigger: GGAGGAGGTAGCTGTGAAGAAGGTTCGAGATCTCAAGGAGACTGACATCAAGCATCTTCGAAAGCTGAAGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8
CDS GCA 72 bp TGTGTGCAAACACCCTTGAAAGTGATGATGTTGGGGTaGTTCAGCTTTCGAAGATGCTTGATGTCAGTCTCC +
Preference number: 6 (lower is better)
Translates to: CVQTPLKVMMLG*FSFRRCLMSVS
Trigger: GGAGACTGACATCAAGCATCTTCGAAAGCTGAAGCACCCCAACATCATCACTTTCAAGGGTGTTTGCACACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023812.10
ENSMUST00000169377.8
ENSMUST00000171565.8