Pregenerated sensors for MAP1LC3A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027602Ensembl transcript IDs: ENSMUST00000029128.4
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CACTCCCAACCCAGCCAGCACCCAAAAGAGCAACCCGAACATGACTaGCCCAGGACCTACCCAGGATGTGGTAGGCTGGCTGGTGGCCCC | + |
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Preference number: 1 (lower is better) Translates to: HSQPSQHPKEQPEHD*PRTYPGCGRLAGGP Trigger: GGGGCCACCAGCCAGCCTACCACATCCTGGGTAGGTCCTGGGCCAGTCATGTTCGGGTTGCTCTTTTGGGTGCTGGCTGGGTTGGGAGTG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029128.4 |
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| 3UTR-3UTR CCA 90 bp | GAACATGACTGGCCCAGGACCTACCCAGGATGTGGTAGGCTGGCTGGTGGCCCCGAGCCAGGACCTCCCTaGGGAGAACCTGACCAGAAC | + |
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Preference number: 2 (lower is better) Translates to: EHDWPRTYPGCGRLAGGPEPGPP*GEPDQN Trigger: GTTCTGGTCAGGTTCTCCCCAGGGAGGTCCTGGCTC...GGGGCCACCAGCCAGCCTACCACATCCTGGGTAGGTCCTGGGCCAGTCATGTTC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029128.4 |
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| 3UTR-3UTR GCA 90 bp | ATGACCACAGATCCATACACCGAGTCAGGACAAGGGGAGCCAGCCTTTCAGGGGCCCACAGAGCAGGGATaGTGCTCCCCACCCACTCCC | + |
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Preference number: 2 (lower is better) Translates to: MTTDPYTESGQGEPAFQGPTEQG*CSPPTP Trigger: GGGAGTGGGTGGGGAGCAGCATCCCTGCTCTGTGGG...CCCCTGAAAGGCTGGCTCCCCTTGTCCTGACTCGGTGTATGGATCTGTGGTCAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029128.4 |
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| 3UTR-3UTR TCA 90 bp | GGAAATGACCACAGATCCATACACCGAGTCAGGACAAGGGGAGCCAGCCTTTCAAAAGCCTCAGGTGGATaGGGGGCAAGATGGGCAGAC | + |
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Preference number: 2 (lower is better) Translates to: GNDHRSIHRVRTRGASLSKASGG*GARWAD Trigger: GTCTGCCCATCTTGCCCCTCATCCACCTGAGGCTTT...TGAAAGGCTGGCTCCCCTTGTCCTGACTCGGTGTATGGATCTGTGGTCATTTCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000029128.4 |
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| 3UTR-3UTR TCA 90 bp | GGAAATGACCACAGATCCATACACCGAGTCAGGACAAGGGGAGCCAGCCTTTCAAAGGGCCTAACAAAATaGCAAACCCCACAGAGCAGG | + |
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Preference number: 2 (lower is better) Translates to: GNDHRSIHRVRTRGASLSKGLTK*QTPQSR Trigger: CCTGCTCTGTGGGGTTTGTCATTTTGTTAGGCCCTT...TGAAAGGCTGGCTCCCCTTGTCCTGACTCGGTGTATGGATCTGTGGTCATTTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029128.4 |
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| 3UTR CCA 72 bp | CCCAGCCAGCACCCAAAAGAGCAACCCGAACATGACTaGCCCAGGACCTACCCAGGATGTGGTAGGCTGGCT | + |
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Preference number: 3 (lower is better) Translates to: PSQHPKEQPEHD*PRTYPGCGRLA Trigger: AGCCAGCCTACCACATCCTGGGTAGGTCCTGGGCCAGTCATGTTCGGGTTGCTCTTTTGGGTGCTGGCTGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029128.4 |
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| CDS-3UTR TCA 90 bp | TCCTGGCAGGAGGCAAAGCCTCAGGTGGATGAGGGGCAAGATGGGCAGACAGGCAGCTGCGCCGCTGCTTaGAAGGCCGGTCGGAGGGCA | + |
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Preference number: 4 (lower is better) Translates to: SWQEAKPQVDEGQDGQTGSCAAA*KAGRRA Trigger: TGCCCTCCGACCGGCCTTTCAAGCAGCGGCGCAGCT...GCCTGTCTGCCCATCTTGCCCCTCATCCACCTGAGGCTTTGCCTCCTGCCAGGA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029128.4 |
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| CDS-3UTR TCA 90 bp | GACCACAGATCCATACACCGAGTCAGGACAAGGGGAGCCAGCCTTTCAGGGGTGAGGCCTGCGTGGGGTTaGGTTGCAGGCGGCGCCGGA | + |
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Preference number: 4 (lower is better) Translates to: DHRSIHRVRTRGASLSGVRPAWG*VAGGAG Trigger: TCCGGCGCCGCCTGCAACTCAACCCCACGCAGGCCT...CACCCCTGAAAGGCTGGCTCCCCTTGTCCTGACTCGGTGTATGGATCTGTGGTC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029128.4 |
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| CDS-3UTR GCA 90 bp | CCCAGCCAGCACCCAAAAGAGCAACCCGAACATGACTGGCCCAGGACCTACCCATGGTCGCGGATCTGCTaGACCTCCTTACAGCGGTCG | + |
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Preference number: 4 (lower is better) Translates to: PSQHPKEQPEHDWPRTYPWSRIC*TSLQRS Trigger: CGACCGCTGTAAGGAGGTGCAGCAGATCCGCGACCA...TGGGTAGGTCCTGGGCCAGTCATGTTCGGGTTGCTCTTTTGGGTGCTGGCTGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029128.4 |
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| CDS-3UTR GCA 90 bp | GACCACAGATCCATACACCGAGTCAGGACAAGGGGAGCCAGCCTTTCAGGGGTGGGGATCTTACTGGGGTaGTGGTCGCGGATCTGCTGC | + |
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Preference number: 4 (lower is better) Translates to: DHRSIHRVRTRGASLSGVGILLG*WSRICC Trigger: GCAGCAGATCCGCGACCAGCACCCCAGTAAGATCCC...CACCCCTGAAAGGCTGGCTCCCCTTGTCCTGACTCGGTGTATGGATCTGTGGTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000029128.4 |
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| CDS-3UTR GCA 90 bp | CCCAGCCAGCACCCAAAAGAGCAACCCGAACATGACTGGCCCAGGACCTACCCAAGCAGGAAGAAGGCCTaGGTGGGGTTGAGTTGCAGG | + |
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Preference number: 4 (lower is better) Translates to: PSQHPKEQPEHDWPRTYPSRKKA*VGLSCR Trigger: CCTGCAACTCAACCCCACGCAGGCCTTCTTCCTGCT...TGGGTAGGTCCTGGGCCAGTCATGTTCGGGTTGCTCTTTTGGGTGCTGGCTGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029128.4 |
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| CDS-3UTR CCA 90 bp | ATGACTGGCCCAGGACCTACCCAGGATGTGGTAGGCTGGCTGGTGGCCCCTACCCATAGATGTCAGCGATaGGTGTGGAGACGCTCACCA | + |
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Preference number: 4 (lower is better) Translates to: MTGPGPTQDVVGWLVAPTHRCQR*VWRRSP Trigger: TGGTGAGCGTCTCCACACCCATCGCTGACATCTATG...GGTAGGGGCCACCAGCCAGCCTACCACATCCTGGGTAGGTCCTGGGCCAGTCAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029128.4 |
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| CDS-3UTR GCA 90 bp | ATGACCACAGATCCATACACCGAGTCAGGACAAGGGGAGCCAGCCTTTCAGGGGTGCTGGTCGCGGATCTaGTGCACCTCCTTACAGCGG | + |
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Preference number: 4 (lower is better) Translates to: MTTDPYTESGQGEPAFQGCWSRI*CTSLQR Trigger: CCGCTGTAAGGAGGTGCAGCAGATCCGCGACCAGCA...CCCCTGAAAGGCTGGCTCCCCTTGTCCTGACTCGGTGTATGGATCTGTGGTCAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029128.4 |
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| CDS-3UTR CCA 90 bp | ATGACCACAGATCCATACACCGAGTCAGGACAAGGGGAGCCAGCCTTTCAGGGGTCACCGGGATCTTACTaGGGTGCTGGTCGCGGATCT | + |
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Preference number: 4 (lower is better) Translates to: MTTDPYTESGQGEPAFQGSPGSY*GAGRGS Trigger: AGATCCGCGACCAGCACCCCAGTAAGATCCCGGTGA...CCCCTGAAAGGCTGGCTCCCCTTGTCCTGACTCGGTGTATGGATCTGTGGTCAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029128.4 |
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| CDS-3UTR GCA 90 bp | GCAGTCTTTATTCTTTCTGCAGAGGAAATGACCACAGATCCATACACCGAGTCAGCGAAGCTGCGCCGCTaGTTGAAAGGCCGGTCGGAG | + |
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Preference number: 4 (lower is better) Translates to: AVFILSAEEMTTDPYTESAKLRR*LKGRSE Trigger: CTCCGACCGGCCTTTCAAGCAGCGGCGCAGCTTCGC...TGACTCGGTGTATGGATCTGTGGTCATTTCCTCTGCAGAAAGAATAAAGACTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029128.4 |
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| CDS-3UTR CCA 90 bp | GACCACAGATCCATACACCGAGTCAGGACAAGGGGAGCCAGCCTTTCAGGGGTGTCGCTCATGTTAACATaGTCTGGGACCAGAAACTTG | + |
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Preference number: 4 (lower is better) Translates to: DHRSIHRVRTRGASLSGVSLMLT*SGTRNL Trigger: CAAGTTTCTGGTCCCAGACCATGTTAACATGAGCGA...CACCCCTGAAAGGCTGGCTCCCCTTGTCCTGACTCGGTGTATGGATCTGTGGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029128.4 |
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| CDS-3UTR CCA 90 bp | GTCTTTATTCTTTCTGCAGAGGAAATGACCACAGATCCATACACCGAGTCAGGAATCTTACTGGGGTGCTaGTCGCGGATCTGCTGCACC | + |
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Preference number: 4 (lower is better) Translates to: VFILSAEEMTTDPYTESGILLGC*SRICCT Trigger: GGTGCAGCAGATCCGCGACCAGCACCCCAGTAAGAT...TCCTGACTCGGTGTATGGATCTGTGGTCATTTCCTCTGCAGAAAGAATAAAGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029128.4 |
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| CDS-3UTR CCA 90 bp | GTCTTTATTCTTTCTGCAGAGGAAATGACCACAGATCCATACACCGAGTCAGGACATGTTAACATGGTCTaGGACCAGAAACTTGGTCTT | + |
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Preference number: 4 (lower is better) Translates to: VFILSAEEMTTDPYTESGHVNMV*DQKLGL Trigger: AAGACCAAGTTTCTGGTCCCAGACCATGTTAACATG...TCCTGACTCGGTGTATGGATCTGTGGTCATTTCCTCTGCAGAAAGAATAAAGAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029128.4 |
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| CDS GCA 90 bp | CGCTCGATGATCACCGGGATCTTACTGGGGTGCTGGTCGCGGATCTaGTGCACCTCCTTACAGCGGTCGGCGAAGCTGCGCCGCTGCTTG | + |
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Preference number: 5 (lower is better) Translates to: RSMITGILLGCWSRI*CTSLQRSAKLRRCL Trigger: CAAGCAGCGGCGCAGCTTCGCCGACCGCTGTAAGGAGGTGCAGCAGATCCGCGACCAGCACCCCAGTAAGATCCCGGTGATCATCGAGCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029128.4 |
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| CDS-3UTR CAA 90 bp | CCCAGCCAGCACCCAAAAGAGCAACCCGAACATGACTGGCCCAGGACCTACCCAAAGCTGCGCCGCTGCTaGAAAGGCCGGTCGGAGGGC | + |
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Preference number: 5 (lower is better) Translates to: PSQHPKEQPEHDWPRTYPKLRRC*KGRSEG Trigger: GCCCTCCGACCGGCCTTTCAAGCAGCGGCGCAGCTT...TGGGTAGGTCCTGGGCCAGTCATGTTCGGGTTGCTCTTTTGGGTGCTGGCTGGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029128.4 |
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| CDS-3UTR CAA 90 bp | GACCACAGATCCATACACCGAGTCAGGACAAGGGGAGCCAGCCTTTCAGGGGTGCTGCGTGGGGTTGAGTaGCAGGCGGCGCCGGATGAT | + |
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Preference number: 5 (lower is better) Translates to: DHRSIHRVRTRGASLSGVLRGVE*QAAPDD Trigger: ATCATCCGGCGCCGCCTGCAACTCAACCCCACGCAG...CACCCCTGAAAGGCTGGCTCCCCTTGTCCTGACTCGGTGTATGGATCTGTGGTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029128.4 |
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| CDS-3UTR CAA 90 bp | GCAGTCTTTATTCTTTCTGCAGAGGAAATGACCACAGATCCATACACCGAGTCAAAGGCCTGCGTGGGGTaGAGTTGCAGGCGGCGCCGG | + |
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Preference number: 5 (lower is better) Translates to: AVFILSAEEMTTDPYTESKACVG*SCRRRR Trigger: CCGGCGCCGCCTGCAACTCAACCCCACGCAGGCCTT...TGACTCGGTGTATGGATCTGTGGTCATTTCCTCTGCAGAAAGAATAAAGACTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029128.4 |
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| CDS-3UTR CAA 90 bp | GGAAATGACCACAGATCCATACACCGAGTCAGGACAAGGGGAGCCAGCCTTTCACGGCGCCGGATGATCTaGACCAACTCGCTCATGTTA | + |
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Preference number: 5 (lower is better) Translates to: GNDHRSIHRVRTRGASLSRRRMI*TNSLML Trigger: TAACATGAGCGAGTTGGTCAAGATCATCCGGCGCCG...TGAAAGGCTGGCTCCCCTTGTCCTGACTCGGTGTATGGATCTGTGGTCATTTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029128.4 |
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| CDS GCA 72 bp | ACCGGGATCTTACTGGGGTGCTGGTCGCGGATCTGCTaGACCTCCTTACAGCGGTCGGCGAAGCTGCGCCGC | + |
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Preference number: 6 (lower is better) Translates to: TGILLGCWSRIC*TSLQRSAKLRR Trigger: GCGGCGCAGCTTCGCCGACCGCTGTAAGGAGGTGCAGCAGATCCGCGACCAGCACCCCAGTAAGATCCCGGT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029128.4 |
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| CDS GCA 72 bp | ATCACCGGGATCTTACTGGGGTGCTGGTCGCGGATCTaGTGCACCTCCTTACAGCGGTCGGCGAAGCTGCGC | + |
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Preference number: 6 (lower is better) Translates to: ITGILLGCWSRI*CTSLQRSAKLR Trigger: GCGCAGCTTCGCCGACCGCTGTAAGGAGGTGCAGCAGATCCGCGACCAGCACCCCAGTAAGATCCCGGTGAT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029128.4 |
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