Pregenerated sensors for MANSC4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000072662Ensembl transcript IDs: ENSMUST00000100780.3, ENSMUST00000123367.2
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | TTGATGGCCAAACTATCTCCAGACAGAGGTTTCTGGAAAACAACAGTCTGGGGATCCGGAGGCAGCAGCTaGGGCCGCACTTCTGCCCGG | + |
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Preference number: 4 (lower is better) Translates to: LMAKLSPDRGFWKTTVWGSGGSS*GRTSAR Trigger: CCGGGCAGAAGTGCGGCCGCAGCTGCTGCCTCCGGA...TCCCCAGACTGTTGTTTTCCAGAAACCTCTGTCTGGAGATAGTTTGGCCATCAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000123367.2 |
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| CDS-3UTR GCA 90 bp | TTGATGGCCAAACTATCTCCAGACAGAGGTTTCTGGAAAACAACAGTCTGGGGACCCCGGGCTCCAGGATaGAGCTCTCCAGGGTTGGGC | + |
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Preference number: 4 (lower is better) Translates to: LMAKLSPDRGFWKTTVWGPRAPG*SSPGLG Trigger: GCCCAACCCTGGAGAGCTGCATCCTGGAGCCCGGGG...TCCCCAGACTGTTGTTTTCCAGAAACCTCTGTCTGGAGATAGTTTGGCCATCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000123367.2 |
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| CDS-3UTR GCA 90 bp | TTGATGGCCAAACTATCTCCAGACAGAGGTTTCTGGAAAACAACAGTCTGGGGAGGTGAGCAGAGCCCATaGACCATGCTAGCCAGCCCC | + |
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Preference number: 4 (lower is better) Translates to: LMAKLSPDRGFWKTTVWGGEQSP*TMLASP Trigger: GGGGCTGGCTAGCATGGTGCATGGGCTCTGCTCACC...TCCCCAGACTGTTGTTTTCCAGAAACCTCTGTCTGGAGATAGTTTGGCCATCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000123367.2 |
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| CDS-3UTR CCA 90 bp | TTGATGGCCAAACTATCTCCAGACAGAGGTTTCTGGAAAACAACAGTCTGGGGATATACAGTATGGCGCTaGCCCCGGGCTCCAGGATGC | + |
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Preference number: 4 (lower is better) Translates to: LMAKLSPDRGFWKTTVWGYTVWR*PRAPGC Trigger: GCATCCTGGAGCCCGGGGCCAGCGCCATACTGTATA...TCCCCAGACTGTTGTTTTCCAGAAACCTCTGTCTGGAGATAGTTTGGCCATCAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000123367.2 |
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| CDS-3UTR TCA 90 bp | TTGATGGCCAAACTATCTCCAGACAGAGGTTTCTGGAAAACAACAGTCTGGGGAGTAGAACACAGTGGGTaGGCAGAGCCCATGCACCAT | + |
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Preference number: 4 (lower is better) Translates to: LMAKLSPDRGFWKTTVWGVEHSG*AEPMHH Trigger: ATGGTGCATGGGCTCTGCTCACCCACTGTGTTCTAC...TCCCCAGACTGTTGTTTTCCAGAAACCTCTGTCTGGAGATAGTTTGGCCATCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000123367.2 |
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| CDS-3UTR CCA 90 bp | TTGATGGCCAAACTATCTCCAGACAGAGGTTTCTGGAAAACAACAGTCTGGGGAGCAGCTCTCCAGGGTTaGGCAGTGAACATGAAGGCA | + |
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Preference number: 4 (lower is better) Translates to: LMAKLSPDRGFWKTTVWGAALQG*AVNMKA Trigger: TGCCTTCATGTTCACTGCCCAACCCTGGAGAGCTGC...TCCCCAGACTGTTGTTTTCCAGAAACCTCTGTCTGGAGATAGTTTGGCCATCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000123367.2 |
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| CDS-3UTR CCA 90 bp | TTGATGGCCAAACTATCTCCAGACAGAGGTTTCTGGAAAACAACAGTCTGGGGACTCTGTAGAACACAGTaGGTGAGCAGAGCCCATGCA | + |
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Preference number: 4 (lower is better) Translates to: LMAKLSPDRGFWKTTVWGLCRTQ*VSRAHA Trigger: TGCATGGGCTCTGCTCACCCACTGTGTTCTACAGAG...TCCCCAGACTGTTGTTTTCCAGAAACCTCTGTCTGGAGATAGTTTGGCCATCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000123367.2 |
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| CDS-3UTR CCA 90 bp | TTGATGGCCAAACTATCTCCAGACAGAGGTTTCTGGAAAACAACAGTCTGGGGATCGTGGACGGGATCGTaGAAGAAGACAGCCACATTA | + |
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Preference number: 4 (lower is better) Translates to: LMAKLSPDRGFWKTTVWGSWTGS*KKTATL Trigger: TAATGTGGCTGTCTTCTTCCACGATCCCGTCCACGA...TCCCCAGACTGTTGTTTTCCAGAAACCTCTGTCTGGAGATAGTTTGGCCATCAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000123367.2 |
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| CDS-3UTR GCA 90 bp | TTGATGGCCAAACTATCTCCAGACAGAGGTTTCTGGAAAACAACAGTCTGGGGAGAAGTAAGTGGCATTTaGTTCCCAAAGCCTTGTCCG | + |
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Preference number: 4 (lower is better) Translates to: LMAKLSPDRGFWKTTVWGEVSGI*FPKPCP Trigger: CGGACAAGGCTTTGGGAAGCAAATGCCACTTACTTC...TCCCCAGACTGTTGTTTTCCAGAAACCTCTGTCTGGAGATAGTTTGGCCATCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000123367.2 |
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| CDS-3UTR GCA 90 bp | TTGATGGCCAAACTATCTCCAGACAGAGGTTTCTGGAAAACAACAGTCTGGGGAGACGCAGTCTTTACCTaGTGTTATGTTATACAGTAT | + |
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Preference number: 4 (lower is better) Translates to: LMAKLSPDRGFWKTTVWGDAVFT*CYVIQY Trigger: ATACTGTATAACATAACAGCAGGTAAAGACTGCGTC...TCCCCAGACTGTTGTTTTCCAGAAACCTCTGTCTGGAGATAGTTTGGCCATCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000123367.2 |
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| CDS TCA 90 bp | AGCAGCTGCGGCCGCACTTCTGCCCGGTGTTCTCCGAGTAGTACTTaGGGAACTGGGCGCCCAGCCTCTGAGACTCCTCCAGGTCCAAGA | + |
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Preference number: 5 (lower is better) Translates to: SSCGRTSARCSPSST*GTGRPASETPPGPR Trigger: TCTTGGACCTGGAGGAGTCTCAGAGGCTGGGCGCCCAGTTCCTCAAGTACTACTCGGAGAACACCGGGCAGAAGTGCGGCCGCAGCTGCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100780.3 ENSMUST00000123367.2 |
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| CDS CCA 90 bp | CAGTATGGCGCTGGCCCCGGGCTCCAGGATGCAGCTCTCCAGGGTTaGGCAGTGAACATGAAGGCAGTTGACATTGTCGTGGACGGGATC | + |
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Preference number: 5 (lower is better) Translates to: QYGAGPGLQDAALQG*AVNMKAVDIVVDGI Trigger: GATCCCGTCCACGACAATGTCAACTGCCTTCATGTTCACTGCCCAACCCTGGAGAGCTGCATCCTGGAGCCCGGGGCCAGCGCCATACTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100780.3 ENSMUST00000123367.2 |
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| CDS TCA 90 bp | CCAGGATGCAGCTCTCCAGGGTTGGGCAGTGAACATGAAGGCAGTTaGCATTGTCGTGGACGGGATCGTGGAAGAAGACAGCCACATTAC | + |
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Preference number: 5 (lower is better) Translates to: PGCSSPGLGSEHEGS*HCRGRDRGRRQPHY Trigger: GTAATGTGGCTGTCTTCTTCCACGATCCCGTCCACGACAATGTCAACTGCCTTCATGTTCACTGCCCAACCCTGGAGAGCTGCATCCTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100780.3 ENSMUST00000123367.2 |
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| CDS CCA 90 bp | GCAGTCTATCCCACCATTCGGACGAGGAGCGGCTGTTTGGGTAGATaGGAGATGTATGCTCAAAAACCAGCAAGTCTGGGTCTATGCCTG | + |
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Preference number: 5 (lower is better) Translates to: AVYPTIRTRSGCLGR*EMYAQKPASLGLCL Trigger: CAGGCATAGACCCAGACTTGCTGGTTTTTGAGCATACATCTCCCATCTACCCAAACAGCCGCTCCTCGTCCGAATGGTGGGATAGACTGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100780.3 |
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| CDS CCA 90 bp | GCAGACGCTGGCGCTCCATCCCATGGCTCTTCGTTCTCAGATGAGTaGTTTCTGCTGTGGGACCCCTTTGTTTTGTTCACTGATGGTTTG | + |
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Preference number: 5 (lower is better) Translates to: ADAGAPSHGSSFSDE*FLLWDPFVLFTDGL Trigger: CAAACCATCAGTGAACAAAACAAAGGGGTCCCACAGCAGAAACCACTCATCTGAGAACGAAGAGCCATGGGATGGAGCGCCAGCGTCTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100780.3 |
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| CDS GCA 90 bp | GATGGGAGATGTATGCTCAAAAACCAGCAAGTCTGGGTCTATGCCTaGTGTTATGTTATACAGTATGGCGCTGGCCCCGGGCTCCAGGAT | + |
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Preference number: 5 (lower is better) Translates to: DGRCMLKNQQVWVYA*CYVIQYGAGPGLQD Trigger: ATCCTGGAGCCCGGGGCCAGCGCCATACTGTATAACATAACAGCAGGCATAGACCCAGACTTGCTGGTTTTTGAGCATACATCTCCCATC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100780.3 |
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| CDS GCA 90 bp | GGTAGATGGGAGATGTATGCTCAAAAACCAGCAAGTCTGGGTCTATaGCTGCTGTTATGTTATACAGTATGGCGCTGGCCCCGGGCTCCA | + |
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Preference number: 5 (lower is better) Translates to: GRWEMYAQKPASLGL*LLLCYTVWRWPRAP Trigger: TGGAGCCCGGGGCCAGCGCCATACTGTATAACATAACAGCAGGCATAGACCCAGACTTGCTGGTTTTTGAGCATACATCTCCCATCTACC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100780.3 |
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| CDS GCA 90 bp | CTAAATCCTGCTGTGTGGTTGACGCTGCCTCTGTGGATGGCACCATaGGGTTCATCACATCTGGGTATACTCCTTCACTCCCTACACTCA | + |
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Preference number: 5 (lower is better) Translates to: LNPAVWLTLPLWMAP*GSSHLGILLHSLHS Trigger: TGAGTGTAGGGAGTGAAGGAGTATACCCAGATGTGATGAACCGCATGGTGCCATCCACAGAGGCAGCGTCAACCACACAGCAGGATTTAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100780.3 |
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| CDS-3UTR CAA 90 bp | TTGATGGCCAAACTATCTCCAGACAGAGGTTTCTGGAAAACAACAGTCTGGGGATGCAGCTCTCCAGGGTaGGGCAGTGAACATGAAGGC | + |
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Preference number: 5 (lower is better) Translates to: LMAKLSPDRGFWKTTVWGCSSPG*GSEHEG Trigger: GCCTTCATGTTCACTGCCCAACCCTGGAGAGCTGCA...TCCCCAGACTGTTGTTTTCCAGAAACCTCTGTCTGGAGATAGTTTGGCCATCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000123367.2 |
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| CDS CCA 90 bp | GCTGTTTGGGTAGATGGGAGATGTATGCTCAAAAACCAGCAAGTCTaGGTCTATGCCTGCTGTTATGTTATACAGTATGGCGCTGGCCCC | + |
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Preference number: 5 (lower is better) Translates to: AVWVDGRCMLKNQQV*VYACCYVIQYGAGP Trigger: GGGGCCAGCGCCATACTGTATAACATAACAGCAGGCATAGACCCAGACTTGCTGGTTTTTGAGCATACATCTCCCATCTACCCAAACAGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100780.3 |
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| CDS-3UTR CAA 90 bp | TTGATGGCCAAACTATCTCCAGACAGAGGTTTCTGGAAAACAACAGTCTGGGGATTGCTTCCCAAAGCCTaGTCCGACGCAGTCTTTACC | + |
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Preference number: 5 (lower is better) Translates to: LMAKLSPDRGFWKTTVWGLLPKA*SDAVFT Trigger: GGTAAAGACTGCGTCGGACAAGGCTTTGGGAAGCAA...TCCCCAGACTGTTGTTTTCCAGAAACCTCTGTCTGGAGATAGTTTGGCCATCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000123367.2 |
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| CDS-3UTR CAA 90 bp | TTGATGGCCAAACTATCTCCAGACAGAGGTTTCTGGAAAACAACAGTCTGGGGATGTTCCAGCCAGTGTTaGAAGCTGCGAGCCCTTCTA | + |
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Preference number: 5 (lower is better) Translates to: LMAKLSPDRGFWKTTVWGCSSQC*KLRALL Trigger: TAGAAGGGCTCGCAGCTTCAAACACTGGCTGGAACA...TCCCCAGACTGTTGTTTTCCAGAAACCTCTGTCTGGAGATAGTTTGGCCATCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000123367.2 |
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| CDS TCA 90 bp | AGAAATAGTCTTGTTGCCTGGACTGTGGGTGAAGTCTGTGCTTGGTaGTACCATGTTGACCTTGGTAGCAGTGGACACGTTTGCAGATGT | + |
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Preference number: 5 (lower is better) Translates to: RNSLVAWTVGEVCAW*YHVDLGSSGHVCRC Trigger: ACATCTGCAAACGTGTCCACTGCTACCAAGGTCAACATGGTATCACCAAGCACAGACTTCACCCACAGTCCAGGCAACAAGACTATTTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100780.3 |
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| CDS CCA 90 bp | GCTCCATCCCATGGCTCTTCGTTCTCAGATGAGTGGTTTCTGCTGTaGGACCCCTTTGTTTTGTTCACTGATGGTTTGCTAATGTTGAGT | + |
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Preference number: 5 (lower is better) Translates to: APSHGSSFSDEWFLL*DPFVLFTDGLLMLS Trigger: ACTCAACATTAGCAAACCATCAGTGAACAAAACAAAGGGGTCCCACAGCAGAAACCACTCATCTGAGAACGAAGAGCCATGGGATGGAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100780.3 |
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| CDS GCA 72 bp | GGCAGCACCCAGGGTCACACAAGCCAGCCAGACCCCTaGAGACGCTGGCGCTCCATCCCATGGCTCTTCGTT | + |
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Preference number: 6 (lower is better) Translates to: GSTQGHTSQPDP*RRWRSIPWLFV Trigger: AACGAAGAGCCATGGGATGGAGCGCCAGCGTCTGCAGGGGTCTGGCTGGCTTGTGTGACCCTGGGTGCTGCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100780.3 |
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| CDS TCA 72 bp | GGCCGCACTTCTGCCCGGTGTTCTCCGAGTAGTACTTaGGGAACTGGGCGCCCAGCCTCTGAGACTCCTCCA | + |
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Preference number: 6 (lower is better) Translates to: GRTSARCSPSST*GTGRPASETPP Trigger: TGGAGGAGTCTCAGAGGCTGGGCGCCCAGTTCCTCAAGTACTACTCGGAGAACACCGGGCAGAAGTGCGGCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100780.3 ENSMUST00000123367.2 |
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| CDS TCA 72 bp | TTACGCCTGCACCCAGATGCTGACCTTTGCCCCATGTaGGACCAGCCCTGCCGCTTCCCACAGCATCTGGAT | + |
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Preference number: 6 (lower is better) Translates to: LRLHPDADLCPM*DQPCRFPQHLD Trigger: ATCCAGATGCTGTGGGAAGCGGCAGGGCTGGTCTCACATGGGGCAAAGGTCAGCATCTGGGTGCAGGCGTAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100780.3 |
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| CDS GCA 72 bp | TGTTATACAGTATGGCGCTGGCCCCGGGCTCCAGGATaGAGCTCTCCAGGGTTGGGCAGTGAACATGAAGGC | + |
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Preference number: 6 (lower is better) Translates to: CYTVWRWPRAPG*SSPGLGSEHEG Trigger: GCCTTCATGTTCACTGCCCAACCCTGGAGAGCTGCATCCTGGAGCCCGGGGCCAGCGCCATACTGTATAACA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100780.3 ENSMUST00000123367.2 |
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| CDS CCA 72 bp | AGTCTGGGTCTATGCCTGCTGTTATGTTATACAGTATaGCGCTGGCCCCGGGCTCCAGGATGCAGCTCTCCA | + |
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Preference number: 6 (lower is better) Translates to: SLGLCLLLCYTV*RWPRAPGCSSP Trigger: TGGAGAGCTGCATCCTGGAGCCCGGGGCCAGCGCCATACTGTATAACATAACAGCAGGCATAGACCCAGACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100780.3 |
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| CDS CCA 72 bp | CGACGCAGTCTTTACCTGCTGTTATGTTATACAGTATaGCGCTGGCCCCGGGCTCCAGGATGCAGCTCTCCA | + |
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Preference number: 6 (lower is better) Translates to: RRSLYLLLCYTV*RWPRAPGCSSP Trigger: TGGAGAGCTGCATCCTGGAGCCCGGGGCCAGCGCCATACTGTATAACATAACAGCAGGTAAAGACTGCGTCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000123367.2 |
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| CDS GCA 72 bp | GCTGTGTGGTTGACGCTGCCTCTGTGGATGGCACCATaGGGTTCATCACATCTGGGTATACTCCTTCACTCC | + |
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Preference number: 6 (lower is better) Translates to: AVWLTLPLWMAP*GSSHLGILLHS Trigger: GGAGTGAAGGAGTATACCCAGATGTGATGAACCGCATGGTGCCATCCACAGAGGCAGCGTCAACCACACAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100780.3 |
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| CDS TCA 72 bp | AGCTCTCCAGGGTTGGGCAGTGAACATGAAGGCAGTTaGCATTGTCGTGGACGGGATCGTGGAAGAAGACAG | + |
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Preference number: 6 (lower is better) Translates to: SSPGLGSEHEGS*HCRGRDRGRRQ Trigger: CTGTCTTCTTCCACGATCCCGTCCACGACAATGTCAACTGCCTTCATGTTCACTGCCCAACCCTGGAGAGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100780.3 ENSMUST00000123367.2 |
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| CDS CCA 72 bp | CCCACCATTCGGACGAGGAGCGGCTGTTTGGGTAGATaGGAGATGTATGCTCAAAAACCAGCAAGTCTGGGT | + |
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Preference number: 6 (lower is better) Translates to: PTIRTRSGCLGR*EMYAQKPASLG Trigger: ACCCAGACTTGCTGGTTTTTGAGCATACATCTCCCATCTACCCAAACAGCCGCTCCTCGTCCGAATGGTGGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100780.3 |
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| CDS CCA 72 bp | GGCGCTCCATCCCATGGCTCTTCGTTCTCAGATGAGTaGTTTCTGCTGTGGGACCCCTTTGTTTTGTTCACT | + |
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Preference number: 6 (lower is better) Translates to: GAPSHGSSFSDE*FLLWDPFVLFT Trigger: AGTGAACAAAACAAAGGGGTCCCACAGCAGAAACCACTCATCTGAGAACGAAGAGCCATGGGATGGAGCGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100780.3 |
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| CDS CAA 72 bp | GCAGTCTATCCCACCATTCGGACGAGGAGCGGCTGTTaGGGTAGATGGGAGATGTATGCTCAAAAACCAGCA | + |
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Preference number: 6 (lower is better) Translates to: AVYPTIRTRSGC*GRWEMYAQKPA Trigger: TGCTGGTTTTTGAGCATACATCTCCCATCTACCCAAACAGCCGCTCCTCGTCCGAATGGTGGGATAGACTGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100780.3 |
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| CDS CAA 72 bp | CTGCTGTGGGACCCCTTTGTTTTGTTCACTGATGGTTaGCTAATGTTGAGTCGAGATCGGCTGGGCACCTGG | + |
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Preference number: 6 (lower is better) Translates to: LLWDPFVLFTDG*LMLSRDRLGTW Trigger: CCAGGTGCCCAGCCGATCTCGACTCAACATTAGCAAACCATCAGTGAACAAAACAAAGGGGTCCCACAGCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100780.3 |
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| CDS TCA 72 bp | CTTGTTGCCTGGACTGTGGGTGAAGTCTGTGCTTGGTaGTACCATGTTGACCTTGGTAGCAGTGGACACGTT | + |
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Preference number: 6 (lower is better) Translates to: LVAWTVGEVCAW*YHVDLGSSGHV Trigger: AACGTGTCCACTGCTACCAAGGTCAACATGGTATCACCAAGCACAGACTTCACCCACAGTCCAGGCAACAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100780.3 |
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| CDS GCA 72 bp | TGTATGCTCAAAAACCAGCAAGTCTGGGTCTATGCCTaGTGTTATGTTATACAGTATGGCGCTGGCCCCGGG | + |
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Preference number: 6 (lower is better) Translates to: CMLKNQQVWVYA*CYVIQYGAGPG Trigger: CCCGGGGCCAGCGCCATACTGTATAACATAACAGCAGGCATAGACCCAGACTTGCTGGTTTTTGAGCATACA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100780.3 |
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| CDS CCA 72 bp | GGTTTGCTAATGTTGAGTCGAGATCGGCTGGGCACCTaGGAAACTCTTGTGTCTGTGGGTCCAAAGAAAGGA | + |
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Preference number: 6 (lower is better) Translates to: GLLMLSRDRLGT*ETLVSVGPKKG Trigger: TCCTTTCTTTGGACCCACAGACACAAGAGTTTCCCAGGTGCCCAGCCGATCTCGACTCAACATTAGCAAACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100780.3 |
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| CDS CAA 72 bp | GGACTGTGGGTGAAGTCTGTGCTTGGTGATACCATGTaGACCTTGGTAGCAGTGGACACGTTTGCAGATGTG | + |
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Preference number: 6 (lower is better) Translates to: GLWVKSVLGDTM*TLVAVDTFADV Trigger: CACATCTGCAAACGTGTCCACTGCTACCAAGGTCAACATGGTATCACCAAGCACAGACTTCACCCACAGTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100780.3 |
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| CDS CAA 90 bp | GAGTGGTTTCTGCTGTGGGACCCCTTTGTTTTGTTCACTGATGGTTaGCTAATGTTGAGTCGAGATCGGCTGGGCACCTGGGAAACTCTT | + |
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Preference number: 6 (lower is better) Translates to: EWFLLWDPFVLFTDG*LMLSRDRLGTWETL Trigger: AAGAGTTTCCCAGGTGCCCAGCCGATCTCGACTCAACATTAGCAAACCATCAGTGAACAAAACAAAGGGGTCCCACAGCAGAAACCACTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100780.3 |
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| CDS TCA 72 bp | GTGGTTTCTGCTGTGGGACCCCTTTGTTTTGTTCACTaGTGGTTTGCTAATGTTGAGTCGAGATCGGCTGGG | + |
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Preference number: 6 (lower is better) Translates to: VVSAVGPLCFVH*WFANVESRSAG Trigger: CCCAGCCGATCTCGACTCAACATTAGCAAACCATCAGTGAACAAAACAAAGGGGTCCCACAGCAGAAACCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100780.3 |
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| CDS CCA 72 bp | TGCCTCTGTGGATGGCACCATGCGGTTCATCACATCTaGGTATACTCCTTCACTCCCTACACTCATAGCTTT | + |
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Preference number: 6 (lower is better) Translates to: CLCGWHHAVHHI*VYSFTPYTHSF Trigger: AAAGCTATGAGTGTAGGGAGTGAAGGAGTATACCCAGATGTGATGAACCGCATGGTGCCATCCACAGAGGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100780.3 |
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| CDS CAA 90 bp | TCTTCGTTCTCAGATGAGTGGTTTCTGCTGTGGGACCCCTTTGTTTaGTTCACTGATGGTTTGCTAATGTTGAGTCGAGATCGGCTGGGC | + |
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Preference number: 6 (lower is better) Translates to: SSFSDEWFLLWDPFV*FTDGLLMLSRDRLG Trigger: GCCCAGCCGATCTCGACTCAACATTAGCAAACCATCAGTGAACAAAACAAAGGGGTCCCACAGCAGAAACCACTCATCTGAGAACGAAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100780.3 |
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| CDS GCA 72 bp | GAGATGTATGCTCAAAAACCAGCAAGTCTGGGTCTATaGCTGCTGTTATGTTATACAGTATGGCGCTGGCCC | + |
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Preference number: 6 (lower is better) Translates to: EMYAQKPASLGL*LLLCYTVWRWP Trigger: GGGCCAGCGCCATACTGTATAACATAACAGCAGGCATAGACCCAGACTTGCTGGTTTTTGAGCATACATCTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100780.3 |
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| CDS GCA 72 bp | CATCCCATGGCTCTTCGTTCTCAGATGAGTGGTTTCTaGTGTGGGACCCCTTTGTTTTGTTCACTGATGGTT | + |
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Preference number: 6 (lower is better) Translates to: HPMALRSQMSGF*CGTPLFCSLMV Trigger: AACCATCAGTGAACAAAACAAAGGGGTCCCACAGCAGAAACCACTCATCTGAGAACGAAGAGCCATGGGATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100780.3 |
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| CDS CAA 90 bp | TTGTTGCCTGGACTGTGGGTGAAGTCTGTGCTTGGTGATACCATGTaGACCTTGGTAGCAGTGGACACGTTTGCAGATGTGAATCTTAAC | + |
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Preference number: 6 (lower is better) Translates to: LLPGLWVKSVLGDTM*TLVAVDTFADVNLN Trigger: GTTAAGATTCACATCTGCAAACGTGTCCACTGCTACCAAGGTCAACATGGTATCACCAAGCACAGACTTCACCCACAGTCCAGGCAACAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100780.3 |
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| CDS CCA 72 bp | CCAAAGAAAGGAGAAATAGTCTTGTTGCCTGGACTGTaGGTGAAGTCTGTGCTTGGTGATACCATGTTGACC | + |
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Preference number: 6 (lower is better) Translates to: PKKGEIVLLPGL*VKSVLGDTMLT Trigger: GGTCAACATGGTATCACCAAGCACAGACTTCACCCACAGTCCAGGCAACAAGACTATTTCTCCTTTCTTTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100780.3 |
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| CDS CCA 72 bp | GTAGATGGGAGATGTATGCTCAAAAACCAGCAAGTCTaGGTCTATGCCTGCTGTTATGTTATACAGTATGGC | + |
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Preference number: 6 (lower is better) Translates to: VDGRCMLKNQQV*VYACCYVIQYG Trigger: GCCATACTGTATAACATAACAGCAGGCATAGACCCAGACTTGCTGGTTTTTGAGCATACATCTCCCATCTAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100780.3 |
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