Pregenerated sensors for MANSC1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032718Ensembl transcript IDs: ENSMUST00000047443.5
Found 78 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GAGGACCCATTAAAACTCGTATCAAACAGTTGCCATTATCTGGAATaGGGAATAGTAATGAATCAGAGCTCAGATGTCCTAAACCAACAA | + |
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Preference number: 1 (lower is better) Translates to: EDPLKLVSNSCHYLE*GIVMNQSSDVLNQQ Trigger: TTGTTGGTTTAGGACATCTGAGCTCTGATTCATTACTATTCCCCATTCCAGATAATGGCAACTGTTTGATACGAGTTTTAATGGGTCCTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| 3UTR-3UTR GCA 90 bp | CTGGAATGGGGAATAGTAATGAATCAGAGCTCAGATGTCCTAAACCAACAAGCTCAGAAGGAGATGGCTTaGCTAGCATGCAGAGGACCC | + |
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Preference number: 2 (lower is better) Translates to: LEWGIVMNQSSDVLNQQAQKEMA*LACRGP Trigger: GGGTCCTCTGCATGCTAGGCAAGCCATCTCCTTCTG...AGCTTGTTGGTTTAGGACATCTGAGCTCTGATTCATTACTATTCCCCATTCCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| 3UTR-3UTR TCA 90 bp | GGAATGGGGAATAGTAATGAATCAGAGCTCAGATGTCCTAAACCAACAAGCTGTAAAATCTGCAATCCCTaGACTCAGGAGGCAGAGGCA | + |
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Preference number: 2 (lower is better) Translates to: GMGNSNESELRCPKPTSCKICNP*TQEAEA Trigger: TGCCTCTGCCTCCTGAGTTCAGGGATTGCAGATTTT...ACAGCTTGTTGGTTTAGGACATCTGAGCTCTGATTCATTACTATTCCCCATTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| 3UTR-3UTR CCA 90 bp | GGAATAGTAATGAATCAGAGCTCAGATGTCCTAAACCAACAAGCTGTCTTGATCGGTTGGACTGAGGGATaGCTCAGAAGGAGATGGCTT | + |
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Preference number: 2 (lower is better) Translates to: GIVMNQSSDVLNQQAVLIGWTEG*LRRRWL Trigger: AAGCCATCTCCTTCTGAGCCATCCCTCAGTCCAACC...GATCAAGACAGCTTGTTGGTTTAGGACATCTGAGCTCTGATTCATTACTATTCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| 3UTR-3UTR CCA 90 bp | GGAATAGTAATGAATCAGAGCTCAGATGTCCTAAACCAACAAGCTGTCTTGATCCAAACAGAAAGTGGTTaGACTGAGGGATGGCTCAGA | + |
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Preference number: 2 (lower is better) Translates to: GIVMNQSSDVLNQQAVLIQTESG*TEGWLR Trigger: TCTGAGCCATCCCTCAGTCCAACCACTTTCTGTTTG...GATCAAGACAGCTTGTTGGTTTAGGACATCTGAGCTCTGATTCATTACTATTCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| 3UTR CCA 72 bp | TTAAAACTCGTATCAAACAGTTGCCATTATCTGGAATaGGGAATAGTAATGAATCAGAGCTCAGATGTCCTA | + |
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Preference number: 3 (lower is better) Translates to: LKLVSNSCHYLE*GIVMNQSSDVL Trigger: TAGGACATCTGAGCTCTGATTCATTACTATTCCCCATTCCAGATAATGGCAACTGTTTGATACGAGTTTTAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS-3UTR CCA 90 bp | CTGAGCCTGTTTCGAAAAGGAAAAGGAAGAGGAGGGAGAGGAGGGAGAGGAGGGGCTCAGGCTTCAGGGTaGCAGAGACGTTACGGAGGG | + |
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Preference number: 4 (lower is better) Translates to: LSLFRKGKGRGGRGGRGGAQASG*QRRYGG Trigger: CCCTCCGTAACGTCTCTGCCACCCTGAAGCCTGAGC...CCCTCCTCTCCCTCCTCTCCCTCCTCTTCCTTTTCCTTTTCGAAACAGGCTCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS-3UTR TCA 90 bp | GACAAACAGAAAGTGGTTGGACTGAGGGATGGCTCAGAAGGAGATGGCTTGCCTATGCGCTGCCTACACTaGCCCTCCTGTCCTCCCAGG | + |
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Preference number: 4 (lower is better) Translates to: DKQKVVGLRDGSEGDGLPMRCLH*PSCPPR Trigger: CCTGGGAGGACAGGAGGGTCAGTGTAGGCAGCGCAT...AGGCAAGCCATCTCCTTCTGAGCCATCCCTCAGTCCAACCACTTTCTGTTTGTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS-3UTR TCA 90 bp | GACAAACAGAAAGTGGTTGGACTGAGGGATGGCTCAGAAGGAGATGGCTTGCCTCACGGTGGTGACAGGTaGTGCTGTGGTGGCCTCCTT | + |
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Preference number: 4 (lower is better) Translates to: DKQKVVGLRDGSEGDGLPHGGDR*CCGGLL Trigger: AAGGAGGCCACCACAGCATCACCTGTCACCACCGTG...AGGCAAGCCATCTCCTTCTGAGCCATCCCTCAGTCCAACCACTTTCTGTTTGTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS-3UTR CCA 90 bp | GGGAGGGGGAGGGAAGTAGGGCTATTCTTCAAGATACAGTTCCTGCTGAGACCGCAGGTGATGCTGTGGTaGCCTCCTTCTGCTTCAAAG | + |
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Preference number: 4 (lower is better) Translates to: GRGREVGLFFKIQFLLRPQVMLW*PPSASK Trigger: CTTTGAAGCAGAAGGAGGCCACCACAGCATCACCTG...CGGTCTCAGCAGGAACTGTATCTTGAAGAATAGCCCTACTTCCCTCCCCCTCCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS-3UTR CCA 90 bp | GGGAGGGGGAGGGAAGTAGGGCTATTCTTCAAGATACAGTTCCTGCTGAGACCGGCCATGCTGGCTTTTTaGACCCTTGTTCAGCGATGC | + |
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Preference number: 4 (lower is better) Translates to: GRGREVGLFFKIQFLLRPAMLAF*TLVQRC Trigger: GCATCGCTGAACAAGGGTCCAAAAAGCCAGCATGGC...CGGTCTCAGCAGGAACTGTATCTTGAAGAATAGCCCTACTTCCCTCCCCCTCCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS-3UTR TCA 90 bp | GACAAACAGAAAGTGGTTGGACTGAGGGATGGCTCAGAAGGAGATGGCTTGCCTCTTCTAGACTCTTGGTaGGGCAGTTCTGACCAGCAG | + |
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Preference number: 4 (lower is better) Translates to: DKQKVVGLRDGSEGDGLPLLDSW*GSSDQQ Trigger: CTGCTGGTCAGAACTGCCTCACCAAGAGTCTAGAAG...AGGCAAGCCATCTCCTTCTGAGCCATCCCTCAGTCCAACCACTTTCTGTTTGTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS-3UTR CCA 90 bp | GAAAATCTGCAATCCCTGAACTCAGGAGGCAGAGGCAGGAAGATCAGGAGTTCATACGAAACCCAGGGGTaGCTCCTGGTGACGAATGGT | + |
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Preference number: 4 (lower is better) Translates to: ENLQSLNSGGRGRKIRSSYETQG*LLVTNG Trigger: ACCATTCGTCACCAGGAGCCACCCCTGGGTTTCGTA...TGAACTCCTGATCTTCCTGCCTCTGCCTCCTGAGTTCAGGGATTGCAGATTTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS-3UTR TCA 90 bp | GGGAGGGGGAGGGAAGTAGGGCTATTCTTCAAGATACAGTTCCTGCTGAGACCGAAGCCACTTCTCAAATaGAAGGCCATGCTGGCTTTT | + |
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Preference number: 4 (lower is better) Translates to: GRGREVGLFFKIQFLLRPKPLLK*KAMLAF Trigger: AAAAGCCAGCATGGCCTTTCATTTGAGAAGTGGCTT...CGGTCTCAGCAGGAACTGTATCTTGAAGAATAGCCCTACTTCCCTCCCCCTCCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS-3UTR TCA 90 bp | CAGAAAGTGGTTGGACTGAGGGATGGCTCAGAAGGAGATGGCTTGCCTAGCATGAGTCTTAGCTGTCACTaGAATGCTGGTCAACAGAAG | + |
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Preference number: 4 (lower is better) Translates to: QKVVGLRDGSEGDGLPSMSLSCH*NAGQQK Trigger: CTTCTGTTGACCAGCATTTCAGTGACAGCTAAGACT...CATGCTAGGCAAGCCATCTCCTTCTGAGCCATCCCTCAGTCCAACCACTTTCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS-3UTR TCA 90 bp | CTGGAATGGGGAATAGTAATGAATCAGAGCTCAGATGTCCTAAACCAACAAGCTTCGAGGTCACGGTGGTaGCAGGTGATGCTGTGGTGG | + |
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Preference number: 4 (lower is better) Translates to: LEWGIVMNQSSDVLNQQASRSRW*QVMLWW Trigger: CCACCACAGCATCACCTGTCACCACCGTGACCTCGA...AGCTTGTTGGTTTAGGACATCTGAGCTCTGATTCATTACTATTCCCCATTCCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS-3UTR TCA 90 bp | GACAAACAGAAAGTGGTTGGACTGAGGGATGGCTCAGAAGGAGATGGCTTGCCTTTAGTCAAAGCTGCCTaGTGTGTAACCACGGGTGTA | + |
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Preference number: 4 (lower is better) Translates to: DKQKVVGLRDGSEGDGLPLVKAA*CVTTGV Trigger: TACACCCGTGGTTACACATCAGGCAGCTTTGACTAA...AGGCAAGCCATCTCCTTCTGAGCCATCCCTCAGTCCAACCACTTTCTGTTTGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS-3UTR TCA 90 bp | TCCAGACATGGTAGTGAAAATCTGCAATCCCTGAACTCAGGAGGCAGAGGCAGGAGCGTAGAGCCTCCTTaGAAGGGCATTGTTTCTAAG | + |
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Preference number: 4 (lower is better) Translates to: SRHGSENLQSLNSGGRGRSVEPP*KGIVSK Trigger: CTTAGAAACAATGCCCTTTCAAGGAGGCTCTACGCT...CCTGCCTCTGCCTCCTGAGTTCAGGGATTGCAGATTTTCACTACCATGTCTGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS-3UTR GCA 90 bp | GGGAGGGGGAGGGAAGTAGGGCTATTCTTCAAGATACAGTTCCTGCTGAGACCGGATCATCAAATTACATaGCTTGTCCCCTGCTATGTC | + |
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Preference number: 4 (lower is better) Translates to: GRGREVGLFFKIQFLLRPDHQIT*LVPCYV Trigger: GACATAGCAGGGGACAAGGCATGTAATTTGATGATC...CGGTCTCAGCAGGAACTGTATCTTGAAGAATAGCCCTACTTCCCTCCCCCTCCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS-3UTR CCA 90 bp | GACAAACAGAAAGTGGTTGGACTGAGGGATGGCTCAGAAGGAGATGGCTTGCCTAAAACAGGTAGCAGTTaGGCTGTCTGTCTGTCTTCC | + |
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Preference number: 4 (lower is better) Translates to: DKQKVVGLRDGSEGDGLPKTGSS*AVCLSS Trigger: GGAAGACAGACAGACAGCCCAACTGCTACCTGTTTT...AGGCAAGCCATCTCCTTCTGAGCCATCCCTCAGTCCAACCACTTTCTGTTTGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS-3UTR CCA 90 bp | GGAATGGGGAATAGTAATGAATCAGAGCTCAGATGTCCTAAACCAACAAGCTGTCACAAGGCCCTTGGCTaGCTTCAGCGGACAGGCATC | + |
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Preference number: 4 (lower is better) Translates to: GMGNSNESELRCPKPTSCHKALG*LQRTGI Trigger: GATGCCTGTCCGCTGAAGCCAGCCAAGGGCCTTGTG...ACAGCTTGTTGGTTTAGGACATCTGAGCTCTGATTCATTACTATTCCCCATTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS-3UTR CCA 90 bp | GAATGGGGAATAGTAATGAATCAGAGCTCAGATGTCCTAAACCAACAAGCTGTCAGGTCACAAGGCCCTTaGCTGGCTTCAGCGGACAGG | + |
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Preference number: 4 (lower is better) Translates to: EWGIVMNQSSDVLNQQAVRSQGP*LASADR Trigger: CCTGTCCGCTGAAGCCAGCCAAGGGCCTTGTGACCT...GACAGCTTGTTGGTTTAGGACATCTGAGCTCTGATTCATTACTATTCCCCATTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS-3UTR CCA 90 bp | GACAAACAGAAAGTGGTTGGACTGAGGGATGGCTCAGAAGGAGATGGCTTGCCTCTGTCACTGAAATGCTaGTCAACAGAAGCTCAGGCT | + |
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Preference number: 4 (lower is better) Translates to: DKQKVVGLRDGSEGDGLPLSLKC*STEAQA Trigger: AGCCTGAGCTTCTGTTGACCAGCATTTCAGTGACAG...AGGCAAGCCATCTCCTTCTGAGCCATCCCTCAGTCCAACCACTTTCTGTTTGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS-3UTR TCA 90 bp | GACAAACAGAAAGTGGTTGGACTGAGGGATGGCTCAGAAGGAGATGGCTTGCCTTTGTTTCATCAGCCTTaGTGTGTTTGCGCAAGTGCA | + |
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Preference number: 4 (lower is better) Translates to: DKQKVVGLRDGSEGDGLPLFHQP*CVCASA Trigger: TGCACTTGCGCAAACACATCAAGGCTGATGAAACAA...AGGCAAGCCATCTCCTTCTGAGCCATCCCTCAGTCCAACCACTTTCTGTTTGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS-3UTR GCA 90 bp | CTGGAATGGGGAATAGTAATGAATCAGAGCTCAGATGTCCTAAACCAACAAGCTGGGCTTTGGGTAACCTaGTGGGGTACGAAACCCAGG | + |
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Preference number: 4 (lower is better) Translates to: LEWGIVMNQSSDVLNQQAGLWVT*WGTKPR Trigger: CCTGGGTTTCGTACCCCAGCAGGTTACCCAAAGCCC...AGCTTGTTGGTTTAGGACATCTGAGCTCTGATTCATTACTATTCCCCATTCCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS-3UTR TCA 90 bp | GAATGGGGAATAGTAATGAATCAGAGCTCAGATGTCCTAAACCAACAAGCTGTCTTGGTGAGGCAGTTCTaGCCAGCAGACGACCTTGGT | + |
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Preference number: 4 (lower is better) Translates to: EWGIVMNQSSDVLNQQAVLVRQF*PADDLG Trigger: ACCAAGGTCGTCTGCTGGTCAGAACTGCCTCACCAA...GACAGCTTGTTGGTTTAGGACATCTGAGCTCTGATTCATTACTATTCCCCATTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS-3UTR CCA 90 bp | GGAATGGGGAATAGTAATGAATCAGAGCTCAGATGTCCTAAACCAACAAGCTGTGACAGGCATCCTCGCTaGGACAGAAAAACAGGTAGC | + |
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Preference number: 4 (lower is better) Translates to: GMGNSNESELRCPKPTSCDRHPR*DRKTGS Trigger: GCTACCTGTTTTTCTGTCCCAGCGAGGATGCCTGTC...ACAGCTTGTTGGTTTAGGACATCTGAGCTCTGATTCATTACTATTCCCCATTCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS-3UTR GCA 90 bp | TCTGGAATGGGGAATAGTAATGAATCAGAGCTCAGATGTCCTAAACCAACAAGCGTGGTGGCCTCCTTCTaGTTCAAAGTCTTAGCTGTC | + |
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Preference number: 4 (lower is better) Translates to: SGMGNSNESELRCPKPTSVVASF*FKVLAV Trigger: GACAGCTAAGACTTTGAAGCAGAAGGAGGCCACCAC...GCTTGTTGGTTTAGGACATCTGAGCTCTGATTCATTACTATTCCCCATTCCAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS-3UTR CCA 90 bp | GGAATAGTAATGAATCAGAGCTCAGATGTCCTAAACCAACAAGCTGTCTTGATCACCAGCAGACGACCTTaGTGTCAGGAAGGAAATGAC | + |
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Preference number: 4 (lower is better) Translates to: GIVMNQSSDVLNQQAVLITSRRP*CQEGND Trigger: GTCATTTCCTTCCTGACACCAAGGTCGTCTGCTGGT...GATCAAGACAGCTTGTTGGTTTAGGACATCTGAGCTCTGATTCATTACTATTCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS-3UTR GCA 90 bp | GGAATGGGGAATAGTAATGAATCAGAGCTCAGATGTCCTAAACCAACAAGCTGTTTTTCTTCAGGGAGCTaGATGCTTGTTTCATCAGCC | + |
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Preference number: 4 (lower is better) Translates to: GMGNSNESELRCPKPTSCFSSGS*MLVSSA Trigger: GGCTGATGAAACAAGCATGCAGCTCCCTGAAGAAAA...ACAGCTTGTTGGTTTAGGACATCTGAGCTCTGATTCATTACTATTCCCCATTCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS-3UTR GCA 90 bp | CTGGAATGGGGAATAGTAATGAATCAGAGCTCAGATGTCCTAAACCAACAAGCTTCAAATGAAAGGCCATaGTGGCTTTTTGGACCCTTG | + |
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Preference number: 4 (lower is better) Translates to: LEWGIVMNQSSDVLNQQASNERP*WLFGPL Trigger: CAAGGGTCCAAAAAGCCAGCATGGCCTTTCATTTGA...AGCTTGTTGGTTTAGGACATCTGAGCTCTGATTCATTACTATTCCCCATTCCAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS-3UTR TCA 90 bp | CTGGAATGGGGAATAGTAATGAATCAGAGCTCAGATGTCCTAAACCAACAAGCTACGATTGGATGTCAATaGCAACGTCTTCTAGACTCT | + |
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Preference number: 4 (lower is better) Translates to: LEWGIVMNQSSDVLNQQATIGCQ*QRLLDS Trigger: AGAGTCTAGAAGACGTTGTCATTGACATCCAATCGT...AGCTTGTTGGTTTAGGACATCTGAGCTCTGATTCATTACTATTCCCCATTCCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS-3UTR TCA 90 bp | GAATGGGGAATAGTAATGAATCAGAGCTCAGATGTCCTAAACCAACAAGCTGTCCAACATAGATCCCGTTaGTCAAGTAGTCAAGTCTTG | + |
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Preference number: 4 (lower is better) Translates to: EWGIVMNQSSDVLNQQAVQHRSR*SSSQVL Trigger: CAAGACTTGACTACTTGATCAACGGGATCTATGTTG...GACAGCTTGTTGGTTTAGGACATCTGAGCTCTGATTCATTACTATTCCCCATTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS-3UTR CCA 90 bp | CTGGAATGGGGAATAGTAATGAATCAGAGCTCAGATGTCCTAAACCAACAAGCTCCTTGTGTTAACTGTTaGAGTGATGAATTAGCGCTG | + |
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Preference number: 4 (lower is better) Translates to: LEWGIVMNQSSDVLNQQAPCVNC*SDELAL Trigger: CAGCGCTAATTCATCACTCCAACAGTTAACACAAGG...AGCTTGTTGGTTTAGGACATCTGAGCTCTGATTCATTACTATTCCCCATTCCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS-3UTR GCA 90 bp | TCTGGAATGGGGAATAGTAATGAATCAGAGCTCAGATGTCCTAAACCAACAAGCGCATTGTTTCTAAGATaGCTTTGGAGTCTGTATGTG | + |
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Preference number: 4 (lower is better) Translates to: SGMGNSNESELRCPKPTSALFLR*LWSLYV Trigger: CACATACAGACTCCAAAGGCATCTTAGAAACAATGC...GCTTGTTGGTTTAGGACATCTGAGCTCTGATTCATTACTATTCCCCATTCCAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS-3UTR CCA 90 bp | TCTGGAATGGGGAATAGTAATGAATCAGAGCTCAGATGTCCTAAACCAACAAGCTTTGAAAGCGACGATTaGATGTCAATGACAACGTCT | + |
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Preference number: 4 (lower is better) Translates to: SGMGNSNESELRCPKPTSFESDD*MSMTTS Trigger: AGACGTTGTCATTGACATCCAATCGTCGCTTTCAAA...GCTTGTTGGTTTAGGACATCTGAGCTCTGATTCATTACTATTCCCCATTCCAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS CCA 90 bp | AGGTCACAAGGCCCTTGGCTGGCTTCAGCGGACAGGCATCCTCGCTaGGACAGAAAAACAGGTAGCAGTTGGGCTGTCTGTCTGTCTTCC | + |
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Preference number: 5 (lower is better) Translates to: RSQGPWLASADRHPR*DRKTGSSWAVCLSS Trigger: GGAAGACAGACAGACAGCCCAACTGCTACCTGTTTTTCTGTCCCAGCGAGGATGCCTGTCCGCTGAAGCCAGCCAAGGGCCTTGTGACCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS CCA 90 bp | CAGCGGAAAATCTCTGATGAGCCTGTAGGTCACAAGGCCCTTGGCTaGCTTCAGCGGACAGGCATCCTCGCTGGGACAGAAAAACAGGTA | + |
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Preference number: 5 (lower is better) Translates to: QRKISDEPVGHKALG*LQRTGILAGTEKQV Trigger: TACCTGTTTTTCTGTCCCAGCGAGGATGCCTGTCCGCTGAAGCCAGCCAAGGGCCTTGTGACCTACAGGCTCATCAGAGATTTTCCGCTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS CCA 90 bp | TCAGCGGACAGGCATCCTCGCTGGGACAGAAAAACAGGTAGCAGTTaGGCTGTCTGTCTGTCTTCCGGGTGTCAAAGATCATCAAATTAC | + |
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Preference number: 5 (lower is better) Translates to: SADRHPRWDRKTGSS*AVCLSSGCQRSSNY Trigger: GTAATTTGATGATCTTTGACACCCGGAAGACAGACAGACAGCCCAACTGCTACCTGTTTTTCTGTCCCAGCGAGGATGCCTGTCCGCTGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS TCA 90 bp | TGGATGTCAATGACAACGTCTTCTAGACTCTTGGTGAGGCAGTTCTaGCCAGCAGACGACCTTGGTGTCAGGAAGGAAATGACCAGCAAC | + |
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Preference number: 5 (lower is better) Translates to: WMSMTTSSRLLVRQF*PADDLGVRKEMTSN Trigger: GTTGCTGGTCATTTCCTTCCTGACACCAAGGTCGTCTGCTGGTCAGAACTGCCTCACCAAGAGTCTAGAAGACGTTGTCATTGACATCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS TCA 90 bp | CAAAACACCACAAAGGAGGGTCCCAATGAGAAGCCACTTCTCAAATaGAAGGCCATGCTGGCTTTTTGGACCCTTGTTCAGCGATGCGCT | + |
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Preference number: 5 (lower is better) Translates to: QNTTKEGPNEKPLLK*KAMLAFWTLVQRCA Trigger: AGCGCATCGCTGAACAAGGGTCCAAAAAGCCAGCATGGCCTTTCATTTGAGAAGTGGCTTCTCATTGGGACCCTCCTTTGTGGTGTTTTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS GCA 90 bp | GATGCCTTTGGAGTCTGTATGTGCCTGAAAGGTGTTAGTCAAAGCTaGCTGATGTGTAACCACGGGTGTAAAACTTGTAGACCCTGGGAC | + |
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Preference number: 5 (lower is better) Translates to: DAFGVCMCLKGVSQS*LMCNHGCKTCRPWD Trigger: GTCCCAGGGTCTACAAGTTTTACACCCGTGGTTACACATCAGGCAGCTTTGACTAACACCTTTCAGGCACATACAGACTCCAAAGGCATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS CCA 90 bp | TTGAACAGCAGGCACCGATACAGTCTTCCTGAGTTGCCAAGTGTATaGGCTCATTGCCTCGAATGCCTTTTGAAAGCGACGATTGGATGT | + |
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Preference number: 5 (lower is better) Translates to: LNSRHRYSLPELPSV*AHCLECLLKATIGC Trigger: ACATCCAATCGTCGCTTTCAAAAGGCATTCGAGGCAATGAGCCCATACACTTGGCAACTCAGGAAGACTGTATCGGTGCCTGCTGTTCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS TCA 90 bp | CCTGCTATGTCTTTTGTTGAACAGCAGGCACCGATACAGTCTTCCTaGGTTGCCAAGTGTATGGGCTCATTGCCTCGAATGCCTTTTGAA | + |
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Preference number: 5 (lower is better) Translates to: PAMSFVEQQAPIQSS*VAKCMGSLPRMPFE Trigger: TTCAAAAGGCATTCGAGGCAATGAGCCCATACACTTGGCAACTCAGGAAGACTGTATCGGTGCCTGCTGTTCAACAAAAGACATAGCAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS CCA 90 bp | AAGTGTATGGGCTCATTGCCTCGAATGCCTTTTGAAAGCGACGATTaGATGTCAATGACAACGTCTTCTAGACTCTTGGTGAGGCAGTTC | + |
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Preference number: 5 (lower is better) Translates to: KCMGSLPRMPFESDD*MSMTTSSRLLVRQF Trigger: GAACTGCCTCACCAAGAGTCTAGAAGACGTTGTCATTGACATCCAATCGTCGCTTTCAAAAGGCATTCGAGGCAATGAGCCCATACACTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS CCA 90 bp | GGTGACGAATGGTCAAGTAAGAGAAACTCTCCTTGTGTTAACTGTTaGAGTGATGAATTAGCGCTGGTCAGCGGAAAATCTCTGATGAGC | + |
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Preference number: 5 (lower is better) Translates to: GDEWSSKRNSPCVNC*SDELALVSGKSLMS Trigger: GCTCATCAGAGATTTTCCGCTGACCAGCGCTAATTCATCACTCCAACAGTTAACACAAGGAGAGTTTCTCTTACTTGACCATTCGTCACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS TCA 90 bp | AAAGATCATCAAATTACATGCCTTGTCCCCTGCTATGTCTTTTGTTaGACAGCAGGCACCGATACAGTCTTCCTGAGTTGCCAAGTGTAT | + |
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Preference number: 5 (lower is better) Translates to: KDHQITCLVPCYVFC*TAGTDTVFLSCQVY Trigger: ATACACTTGGCAACTCAGGAAGACTGTATCGGTGCCTGCTGTTCAACAAAAGACATAGCAGGGGACAAGGCATGTAATTTGATGATCTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS-3UTR CAA 90 bp | CTGGAATGGGGAATAGTAATGAATCAGAGCTCAGATGTCCTAAACCAACAAGCTTCCCAGGAAGCAGTCTaGTTTGTAATGGAAGACTCT | + |
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Preference number: 5 (lower is better) Translates to: LEWGIVMNQSSDVLNQQASQEAV*FVMEDS Trigger: AGAGTCTTCCATTACAAACAAGACTGCTTCCTGGGA...AGCTTGTTGGTTTAGGACATCTGAGCTCTGATTCATTACTATTCCCCATTCCAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS TCA 72 bp | ACCCTGGGACTCCTGGGAGCTTCGAGGTCACGGTGGTaGCAGGTGATGCTGTGGTGGCCTCCTTCTGCTTCA | + |
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Preference number: 6 (lower is better) Translates to: TLGLLGASRSRW*QVMLWWPPSAS Trigger: TGAAGCAGAAGGAGGCCACCACAGCATCACCTGTCACCACCGTGACCTCGAAGCTCCCAGGAGTCCCAGGGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS CCA 72 bp | GGCCCTTGGCTGGCTTCAGCGGACAGGCATCCTCGCTaGGACAGAAAAACAGGTAGCAGTTGGGCTGTCTGT | + |
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Preference number: 6 (lower is better) Translates to: GPWLASADRHPR*DRKTGSSWAVC Trigger: ACAGACAGCCCAACTGCTACCTGTTTTTCTGTCCCAGCGAGGATGCCTGTCCGCTGAAGCCAGCCAAGGGCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS GCA 72 bp | AAGGCCATGCTGGCTTTTTGGACCCTTGTTCAGCGATaGGCTGCCTACACTGACCCTCCTGTCCTCCCAGGA | + |
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Preference number: 6 (lower is better) Translates to: KAMLAFWTLVQR*AAYTDPPVLPG Trigger: TCCTGGGAGGACAGGAGGGTCAGTGTAGGCAGCGCATCGCTGAACAAGGGTCCAAAAAGCCAGCATGGCCTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS CCA 72 bp | ATCTCTGATGAGCCTGTAGGTCACAAGGCCCTTGGCTaGCTTCAGCGGACAGGCATCCTCGCTGGGACAGAA | + |
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Preference number: 6 (lower is better) Translates to: ISDEPVGHKALG*LQRTGILAGTE Trigger: TTCTGTCCCAGCGAGGATGCCTGTCCGCTGAAGCCAGCCAAGGGCCTTGTGACCTACAGGCTCATCAGAGAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS CCA 72 bp | GACGTTACGGAGGGGAGCCACAGCTACAGTGGTAGGTaGAGTCGGCACAGTTTTAGGGAGCAGATGAGCCAT | + |
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Preference number: 6 (lower is better) Translates to: DVTEGSHSYSGR*SRHSFREQMSH Trigger: ATGGCTCATCTGCTCCCTAAAACTGTGCCGACTCCACCTACCACTGTAGCTGTGGCTCCCCTCCGTAACGTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS CCA 72 bp | CTGAAATGCTGGTCAACAGAAGCTCAGGCTTCAGGGTaGCAGAGACGTTACGGAGGGGAGCCACAGCTACAG | + |
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Preference number: 6 (lower is better) Translates to: LKCWSTEAQASG*QRRYGGEPQLQ Trigger: CTGTAGCTGTGGCTCCCCTCCGTAACGTCTCTGCCACCCTGAAGCCTGAGCTTCTGTTGACCAGCATTTCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS CAA 90 bp | GATGCGCTGCCTACACTGACCCTCCTGTCCTCCCAGGAAGCAGTCTaGTTTGTAATGGAAGACTCTGAGGTTGAGCTTTTCCCGTGCCTC | + |
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Preference number: 6 (lower is better) Translates to: DALPTLTLLSSQEAV*FVMEDSEVELFPCL Trigger: GAGGCACGGGAAAAGCTCAACCTCAGAGTCTTCCATTACAAACAAGACTGCTTCCTGGGAGGACAGGAGGGTCAGTGTAGGCAGCGCATC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS TCA 72 bp | TTTTTGGACCCTTGTTCAGCGATGCGCTGCCTACACTaGCCCTCCTGTCCTCCCAGGAAGCAGTCTTGTTTG | + |
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Preference number: 6 (lower is better) Translates to: FLDPCSAMRCLH*PSCPPRKQSCL Trigger: CAAACAAGACTGCTTCCTGGGAGGACAGGAGGGTCAGTGTAGGCAGCGCATCGCTGAACAAGGGTCCAAAAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS TCA 72 bp | CCGTGCCTCGGGTCTGAAGTCAGCGTAGAGCCTCCTTaGAAGGGCATTGTTTCTAAGATGCCTTTGGAGTCT | + |
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Preference number: 6 (lower is better) Translates to: PCLGSEVSVEPP*KGIVSKMPLES Trigger: AGACTCCAAAGGCATCTTAGAAACAATGCCCTTTCAAGGAGGCTCTACGCTGACTTCAGACCCGAGGCACGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS CCA 72 bp | ACTCTTGGTGAGGCAGTTCTGACCAGCAGACGACCTTaGTGTCAGGAAGGAAATGACCAGCAACGAGTAAGC | + |
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Preference number: 6 (lower is better) Translates to: TLGEAVLTSRRP*CQEGNDQQRVS Trigger: GCTTACTCGTTGCTGGTCATTTCCTTCCTGACACCAAGGTCGTCTGCTGGTCAGAACTGCCTCACCAAGAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS TCA 72 bp | GGTGGCCTCCTTCTGCTTCAAAGTCTTAGCTGTCACTaGAATGCTGGTCAACAGAAGCTCAGGCTTCAGGGT | + |
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Preference number: 6 (lower is better) Translates to: GGLLLLQSLSCH*NAGQQKLRLQG Trigger: ACCCTGAAGCCTGAGCTTCTGTTGACCAGCATTTCAGTGACAGCTAAGACTTTGAAGCAGAAGGAGGCCACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS CCA 72 bp | GGGGTACGAAACCCAGGGGTGGCTCCTGGTGACGAATaGTCAAGTAAGAGAAACTCTCCTTGTGTTAACTGT | + |
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Preference number: 6 (lower is better) Translates to: GVRNPGVAPGDE*SSKRNSPCVNC Trigger: ACAGTTAACACAAGGAGAGTTTCTCTTACTTGACCATTCGTCACCAGGAGCCACCCCTGGGTTTCGTACCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS TCA 72 bp | ATGACAACGTCTTCTAGACTCTTGGTGAGGCAGTTCTaGCCAGCAGACGACCTTGGTGTCAGGAAGGAAATG | + |
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Preference number: 6 (lower is better) Translates to: MTTSSRLLVRQF*PADDLGVRKEM Trigger: CATTTCCTTCCTGACACCAAGGTCGTCTGCTGGTCAGAACTGCCTCACCAAGAGTCTAGAAGACGTTGTCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS CAA 72 bp | TTGTTGAACAGCAGGCACCGATACAGTCTTCCTGAGTaGCCAAGTGTATGGGCTCATTGCCTCGAATGCCTT | + |
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Preference number: 6 (lower is better) Translates to: LLNSRHRYSLPE*PSVWAHCLECL Trigger: AAGGCATTCGAGGCAATGAGCCCATACACTTGGCAACTCAGGAAGACTGTATCGGTGCCTGCTGTTCAACAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS CAA 72 bp | CCTACACTGACCCTCCTGTCCTCCCAGGAAGCAGTCTaGTTTGTAATGGAAGACTCTGAGGTTGAGCTTTTC | + |
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Preference number: 6 (lower is better) Translates to: PTLTLLSSQEAV*FVMEDSEVELF Trigger: GAAAAGCTCAACCTCAGAGTCTTCCATTACAAACAAGACTGCTTCCTGGGAGGACAGGAGGGTCAGTGTAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS TCA 72 bp | TCTTTTGTTGAACAGCAGGCACCGATACAGTCTTCCTaGGTTGCCAAGTGTATGGGCTCATTGCCTCGAATG | + |
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Preference number: 6 (lower is better) Translates to: SFVEQQAPIQSS*VAKCMGSLPRM Trigger: CATTCGAGGCAATGAGCCCATACACTTGGCAACTCAGGAAGACTGTATCGGTGCCTGCTGTTCAACAAAAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS TCA 72 bp | GTGGTAGGTGGAGTCGGCACAGTTTTAGGGAGCAGATaGGCCATTTTTAGTTCTGAGGGAAGCTGTAAACTC | + |
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Preference number: 6 (lower is better) Translates to: VVGGVGTVLGSR*AIFSSEGSCKL Trigger: GAGTTTACAGCTTCCCTCAGAACTAAAAATGGCTCATCTGCTCCCTAAAACTGTGCCGACTCCACCTACCAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS TCA 72 bp | ACAAAGGAGGGTCCCAATGAGAAGCCACTTCTCAAATaGAAGGCCATGCTGGCTTTTTGGACCCTTGTTCAG | + |
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Preference number: 6 (lower is better) Translates to: TKEGPNEKPLLK*KAMLAFWTLVQ Trigger: CTGAACAAGGGTCCAAAAAGCCAGCATGGCCTTTCATTTGAGAAGTGGCTTCTCATTGGGACCCTCCTTTGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS CAA 90 bp | CTATGTCTTTTGTTGAACAGCAGGCACCGATACAGTCTTCCTGAGTaGCCAAGTGTATGGGCTCATTGCCTCGAATGCCTTTTGAAAGCG | + |
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Preference number: 6 (lower is better) Translates to: LCLLLNSRHRYSLPE*PSVWAHCLECLLKA Trigger: CGCTTTCAAAAGGCATTCGAGGCAATGAGCCCATACACTTGGCAACTCAGGAAGACTGTATCGGTGCCTGCTGTTCAACAAAAGACATAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS CAA 90 bp | TGTCTGTCTGTCTTCCGGGTGTCAAAGATCATCAAATTACATGCCTaGTCCCCTGCTATGTCTTTTGTTGAACAGCAGGCACCGATACAG | + |
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Preference number: 6 (lower is better) Translates to: CLSVFRVSKIIKLHA*SPAMSFVEQQAPIQ Trigger: CTGTATCGGTGCCTGCTGTTCAACAAAAGACATAGCAGGGGACAAGGCATGTAATTTGATGATCTTTGACACCCGGAAGACAGACAGACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS TCA 72 bp | TGCCAAGTGTATGGGCTCATTGCCTCGAATGCCTTTTaGAAGCGACGATTGGATGTCAATGACAACGTCTTC | + |
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Preference number: 6 (lower is better) Translates to: CQVYGLIASNAF*KRRLDVNDNVF Trigger: GAAGACGTTGTCATTGACATCCAATCGTCGCTTTCAAAAGGCATTCGAGGCAATGAGCCCATACACTTGGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS TCA 72 bp | CAAATTACATGCCTTGTCCCCTGCTATGTCTTTTGTTaGACAGCAGGCACCGATACAGTCTTCCTGAGTTGC | + |
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Preference number: 6 (lower is better) Translates to: QITCLVPCYVFC*TAGTDTVFLSC Trigger: GCAACTCAGGAAGACTGTATCGGTGCCTGCTGTTCAACAAAAGACATAGCAGGGGACAAGGCATGTAATTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS TCA 72 bp | TTACCAGAAACAAAACACCACAAAGGAGGGTCCCAATaGGAAGCCACTTCTCAAATGAAAGGCCATGCTGGC | + |
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Preference number: 6 (lower is better) Translates to: LPETKHHKGGSQ*EATSQMKGHAG Trigger: GCCAGCATGGCCTTTCATTTGAGAAGTGGCTTCTCATTGGGACCCTCCTTTGTGGTGTTTTGTTTCTGGTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS CCA 72 bp | GGCTCATTGCCTCGAATGCCTTTTGAAAGCGACGATTaGATGTCAATGACAACGTCTTCTAGACTCTTGGTG | + |
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Preference number: 6 (lower is better) Translates to: GSLPRMPFESDD*MSMTTSSRLLV Trigger: CACCAAGAGTCTAGAAGACGTTGTCATTGACATCCAATCGTCGCTTTCAAAAGGCATTCGAGGCAATGAGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS TCA 72 bp | GTCAACATAGATCCCGTTGATCAAGTAGTCAAGTCTTaGATACCGTTTCCTACGGAGGGCTTCAACCAGCAT | + |
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Preference number: 6 (lower is better) Translates to: VNIDPVDQVVKS*IPFPTEGFNQH Trigger: ATGCTGGTTGAAGCCCTCCGTAGGAAACGGTATTCAAGACTTGACTACTTGATCAACGGGATCTATGTTGAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS GCA 72 bp | GGAGTCTGTATGTGCCTGAAAGGTGTTAGTCAAAGCTaGCTGATGTGTAACCACGGGTGTAAAACTTGTAGA | + |
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Preference number: 6 (lower is better) Translates to: GVCMCLKGVSQS*LMCNHGCKTCR Trigger: TCTACAAGTTTTACACCCGTGGTTACACATCAGGCAGCTTTGACTAACACCTTTCAGGCACATACAGACTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS CAA 72 bp | TCAAATTACATGCCTTGTCCCCTGCTATGTCTTTTGTaGAACAGCAGGCACCGATACAGTCTTCCTGAGTTG | + |
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Preference number: 6 (lower is better) Translates to: SNYMPCPLLCLL*NSRHRYSLPEL Trigger: CAACTCAGGAAGACTGTATCGGTGCCTGCTGTTCAACAAAAGACATAGCAGGGGACAAGGCATGTAATTTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS CAA 72 bp | GTCTTCCGGGTGTCAAAGATCATCAAATTACATGCCTaGTCCCCTGCTATGTCTTTTGTTGAACAGCAGGCA | + |
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Preference number: 6 (lower is better) Translates to: VFRVSKIIKLHA*SPAMSFVEQQA Trigger: TGCCTGCTGTTCAACAAAAGACATAGCAGGGGACAAGGCATGTAATTTGATGATCTTTGACACCCGGAAGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS CAA 90 bp | CAAAGATCATCAAATTACATGCCTTGTCCCCTGCTATGTCTTTTGTaGAACAGCAGGCACCGATACAGTCTTCCTGAGTTGCCAAGTGTA | + |
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Preference number: 6 (lower is better) Translates to: QRSSNYMPCPLLCLL*NSRHRYSLPELPSV Trigger: TACACTTGGCAACTCAGGAAGACTGTATCGGTGCCTGCTGTTCAACAAAAGACATAGCAGGGGACAAGGCATGTAATTTGATGATCTTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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| CDS CCA 72 bp | TGGTCAAGTAAGAGAAACTCTCCTTGTGTTAACTGTTaGAGTGATGAATTAGCGCTGGTCAGCGGAAAATCT | + |
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Preference number: 6 (lower is better) Translates to: WSSKRNSPCVNC*SDELALVSGKS Trigger: AGATTTTCCGCTGACCAGCGCTAATTCATCACTCCAACAGTTAACACAAGGAGAGTTTCTCTTACTTGACCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047443.5 |
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